BLASTX nr result
ID: Rheum21_contig00018448
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00018448
(403 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002516892.1| nucleic acid binding protein, putative [Rici... 61 2e-07
gb|EMJ24004.1| hypothetical protein PRUPE_ppa005056mg [Prunus pe... 60 4e-07
ref|XP_004296815.1| PREDICTED: zinc finger CCCH domain-containin... 58 1e-06
ref|XP_006342757.1| PREDICTED: zinc finger CCCH domain-containin... 57 2e-06
ref|NP_187292.2| zinc finger CCCH domain-containing protein 34 [... 57 2e-06
ref|XP_002314462.1| hypothetical protein POPTR_0010s02320g [Popu... 57 2e-06
dbj|BAF02113.1| hypothetical protein [Arabidopsis thaliana] 57 2e-06
ref|XP_004229205.1| PREDICTED: zinc finger CCCH domain-containin... 57 2e-06
ref|XP_002884577.1| hypothetical protein ARALYDRAFT_477944 [Arab... 57 3e-06
gb|ESW19882.1| hypothetical protein PHAVU_006G163300g [Phaseolus... 56 6e-06
gb|ESW19881.1| hypothetical protein PHAVU_006G163300g [Phaseolus... 56 6e-06
ref|XP_004508292.1| PREDICTED: zinc finger CCCH domain-containin... 56 6e-06
gb|ADK63414.1| CCCH type zinc finger protein [Brassica rapa] 55 7e-06
ref|XP_002330353.1| predicted protein [Populus trichocarpa] 55 9e-06
ref|XP_002330352.1| predicted protein [Populus trichocarpa] gi|5... 55 9e-06
>ref|XP_002516892.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223543980|gb|EEF45506.1| nucleic acid binding
protein, putative [Ricinus communis]
Length = 481
Score = 60.8 bits (146), Expect = 2e-07
Identities = 30/62 (48%), Positives = 36/62 (58%)
Frame = +1
Query: 217 RRGRTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYLR 396
R GRT E S+ DP+ +W+ GP+T LEE + YPERP E DCIYYLR
Sbjct: 3 RYGRTQEGSQSDPSPEWTGPGPETVLEE----GDWQLGLGEVEPGYPERPEEADCIYYLR 58
Query: 397 TG 402
TG
Sbjct: 59 TG 60
>gb|EMJ24004.1| hypothetical protein PRUPE_ppa005056mg [Prunus persica]
Length = 479
Score = 59.7 bits (143), Expect = 4e-07
Identities = 30/63 (47%), Positives = 37/63 (58%)
Frame = +1
Query: 214 KRRGRTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYL 393
+R GRT E S+ DP+ +W+ GP+T LEE M +YPERP E DC YYL
Sbjct: 2 ERYGRTTEGSQSDPSPEWTVPGPETGLEESM-----WQLGLGPGESYPERPNETDCSYYL 56
Query: 394 RTG 402
RTG
Sbjct: 57 RTG 59
>ref|XP_004296815.1| PREDICTED: zinc finger CCCH domain-containing protein 58-like
[Fragaria vesca subsp. vesca]
Length = 475
Score = 58.2 bits (139), Expect = 1e-06
Identities = 29/63 (46%), Positives = 37/63 (58%)
Frame = +1
Query: 214 KRRGRTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYL 393
+R GR+ E S+ DP+ +W+ GP+T LEE M +YPERP E DC YYL
Sbjct: 2 ERYGRSTEGSQSDPSPEWTAPGPETGLEESM-----WQLALGPGESYPERPDEADCSYYL 56
Query: 394 RTG 402
RTG
Sbjct: 57 RTG 59
>ref|XP_006342757.1| PREDICTED: zinc finger CCCH domain-containing protein 58-like
[Solanum tuberosum]
Length = 492
Score = 57.4 bits (137), Expect = 2e-06
Identities = 28/59 (47%), Positives = 34/59 (57%)
Frame = +1
Query: 226 RTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYLRTG 402
+ ME + DP ++W+ G +T LEEPM YPERP EPDCIYYLRTG
Sbjct: 8 QAMEGAPVDPVSEWAVPGGETGLEEPM----WQLSLGTGPEPYPERPNEPDCIYYLRTG 62
>ref|NP_187292.2| zinc finger CCCH domain-containing protein 34 [Arabidopsis
thaliana] gi|150387824|sp|Q9SQU4.2|C3H34_ARATH RecName:
Full=Zinc finger CCCH domain-containing protein 34;
Short=AtC3H34; AltName: Full=Zinc finger CCCH
domain-containing protein ZFN-like 2
gi|110741372|dbj|BAF02236.1| hypothetical protein
[Arabidopsis thaliana] gi|332640868|gb|AEE74389.1| zinc
finger CCCH domain-containing protein 34 [Arabidopsis
thaliana]
Length = 462
Score = 57.4 bits (137), Expect = 2e-06
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +1
Query: 214 KRRGRTMER-SEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDS--AYPERPGEPDCI 384
+R GR E S DP+ +W+ HG +T +E PM +YPERP EPDCI
Sbjct: 2 ERYGRPGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEPDCI 61
Query: 385 YYLRTG 402
YYLRTG
Sbjct: 62 YYLRTG 67
>ref|XP_002314462.1| hypothetical protein POPTR_0010s02320g [Populus trichocarpa]
gi|222863502|gb|EEF00633.1| hypothetical protein
POPTR_0010s02320g [Populus trichocarpa]
Length = 456
Score = 57.4 bits (137), Expect = 2e-06
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +1
Query: 217 RRGRTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYLR 396
R GR E S+ DPA +W+ G +T LEE + +S YPERP E DC+YYLR
Sbjct: 3 RYGRGQEGSQSDPAQEWTGSGQETGLEEGV----WQLEIGETESEYPERPNEQDCMYYLR 58
Query: 397 TG 402
TG
Sbjct: 59 TG 60
>dbj|BAF02113.1| hypothetical protein [Arabidopsis thaliana]
Length = 462
Score = 57.4 bits (137), Expect = 2e-06
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +1
Query: 214 KRRGRTMER-SEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDS--AYPERPGEPDCI 384
+R GR E S DP+ +W+ HG +T +E PM +YPERP EPDCI
Sbjct: 2 ERYGRPGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEPDCI 61
Query: 385 YYLRTG 402
YYLRTG
Sbjct: 62 YYLRTG 67
>ref|XP_004229205.1| PREDICTED: zinc finger CCCH domain-containing protein 58-like
[Solanum lycopersicum]
Length = 496
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/59 (47%), Positives = 33/59 (55%)
Frame = +1
Query: 226 RTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYLRTG 402
+ ME DP ++W+ G +T LEEPM YPERP EPDCIYYLRTG
Sbjct: 8 QAMEGEPVDPVSEWAVPGGETGLEEPM----WQLSLGTGPEPYPERPNEPDCIYYLRTG 62
>ref|XP_002884577.1| hypothetical protein ARALYDRAFT_477944 [Arabidopsis lyrata subsp.
lyrata] gi|297330417|gb|EFH60836.1| hypothetical protein
ARALYDRAFT_477944 [Arabidopsis lyrata subsp. lyrata]
Length = 454
Score = 56.6 bits (135), Expect = 3e-06
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 214 KRRGRTMER-SEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYY 390
+R GR E S DP+ +W+ HG +T LE M +YPERP EPDCIYY
Sbjct: 2 ERYGRAGEEGSRSDPSLEWTSHGGETGLEASM---WRLGLSGGGGESYPERPDEPDCIYY 58
Query: 391 LRTG 402
LRTG
Sbjct: 59 LRTG 62
>gb|ESW19882.1| hypothetical protein PHAVU_006G163300g [Phaseolus vulgaris]
Length = 361
Score = 55.8 bits (133), Expect = 6e-06
Identities = 27/60 (45%), Positives = 34/60 (56%)
Frame = +1
Query: 223 GRTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYLRTG 402
GR+ E S DP+ +W+ G T LEEPM + +YP+RP E DC YYLRTG
Sbjct: 5 GRSSEGSRSDPSPEWAGPGAQTGLEEPM----WQLGMGAAEESYPQRPDETDCTYYLRTG 60
>gb|ESW19881.1| hypothetical protein PHAVU_006G163300g [Phaseolus vulgaris]
Length = 353
Score = 55.8 bits (133), Expect = 6e-06
Identities = 27/60 (45%), Positives = 34/60 (56%)
Frame = +1
Query: 223 GRTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYLRTG 402
GR+ E S DP+ +W+ G T LEEPM + +YP+RP E DC YYLRTG
Sbjct: 5 GRSSEGSRSDPSPEWAGPGAQTGLEEPM----WQLGMGAAEESYPQRPDETDCTYYLRTG 60
>ref|XP_004508292.1| PREDICTED: zinc finger CCCH domain-containing protein 34-like
[Cicer arietinum]
Length = 479
Score = 55.8 bits (133), Expect = 6e-06
Identities = 29/63 (46%), Positives = 35/63 (55%)
Frame = +1
Query: 214 KRRGRTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYL 393
+R GRT E S+ DP +W+ G DTTLE +YP+RP E DCIYYL
Sbjct: 2 ERYGRTNEGSQSDPTPEWNVGGGDTTLE---------GYGLVGGESYPQRPDEADCIYYL 52
Query: 394 RTG 402
RTG
Sbjct: 53 RTG 55
>gb|ADK63414.1| CCCH type zinc finger protein [Brassica rapa]
Length = 455
Score = 55.5 bits (132), Expect = 7e-06
Identities = 30/64 (46%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 214 KRRGRTMER-SEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYY 390
+R GR E S DP+ +WS HG +T +E M AYPER EPDCIYY
Sbjct: 2 ERYGRAGEEGSRSDPSIEWSSHGGETRVEASM----WRLGLTGGGEAYPERSNEPDCIYY 57
Query: 391 LRTG 402
LRTG
Sbjct: 58 LRTG 61
>ref|XP_002330353.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 55.1 bits (131), Expect = 9e-06
Identities = 28/62 (45%), Positives = 35/62 (56%)
Frame = +1
Query: 217 RRGRTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYLR 396
R R E S+ DPA +W+ GP+T LEE + +S YPER E DC+YYLR
Sbjct: 3 RYSRGQEGSQSDPALEWTGSGPETGLEEGV----WQLGLGETESEYPERSNEQDCMYYLR 58
Query: 397 TG 402
TG
Sbjct: 59 TG 60
>ref|XP_002330352.1| predicted protein [Populus trichocarpa]
gi|566185418|ref|XP_006380188.1| hypothetical protein
POPTR_0008s22730g [Populus trichocarpa]
gi|550333709|gb|ERP57985.1| hypothetical protein
POPTR_0008s22730g [Populus trichocarpa]
Length = 477
Score = 55.1 bits (131), Expect = 9e-06
Identities = 28/62 (45%), Positives = 35/62 (56%)
Frame = +1
Query: 217 RRGRTMERSEFDPATDWSDHGPDTTLEEPMQYXXXXXXXXXXDSAYPERPGEPDCIYYLR 396
R R E S+ DPA +W+ GP+T LEE + +S YPER E DC+YYLR
Sbjct: 3 RYSRGQEGSQSDPALEWTGSGPETGLEEGV----WQLGLGETESEYPERSNEQDCMYYLR 58
Query: 397 TG 402
TG
Sbjct: 59 TG 60