BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00018387
         (506 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004292078.1| PREDICTED: uncharacterized protein LOC101292...   104   1e-20
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    96   4e-18
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]              94   2e-17
gb|ABA99142.1| retrotransposon protein, putative, Ty3-gypsy subc...    92   5e-17
gb|AAC28207.1| T24H24.13 gene product [Arabidopsis thaliana] gi|...    92   5e-17
emb|CAE76024.1| B1292H11.10 [Oryza sativa Japonica Group]              92   9e-17
gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subc...    91   1e-16
gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...    91   1e-16
emb|CAB45815.1| putative protein [Arabidopsis thaliana] gi|72688...    91   2e-16
emb|CAN77145.1| hypothetical protein VITISV_038340 [Vitis vinifera]    90   3e-16
gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subc...    89   5e-16
gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subc...    89   5e-16
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...    89   6e-16
gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Jap...    89   8e-16
gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subc...    89   8e-16
gb|EMJ26121.1| hypothetical protein PRUPE_ppa021786mg [Prunus pe...    88   1e-15
gb|AAV32123.1| putative polyprotein [Oryza sativa Japonica Group]      88   1e-15
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    88   1e-15
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    88   1e-15
gb|AAO23086.1| putative gag-pol precursor [Oryza sativa Japonica...    87   2e-15

>ref|XP_004292078.1| PREDICTED: uncharacterized protein LOC101292967 [Fragaria vesca
           subsp. vesca]
          Length = 257

 Score =  104 bits (259), Expect = 1e-20
 Identities = 54/154 (35%), Positives = 82/154 (53%)
 Frame = +2

Query: 44  SSSRGTTATRHAYRSRCQALEVLRAEEGPPKRHRVSSDHLLSFSEEDLVGLQVPHNDPLI 223
           S     T  R   R   +   V   E+      R   + ++SFS++D VG+Q  H D L+
Sbjct: 48  SPGEDETRLRSEIRREEKIRRVCAIEKEVNLEARPGQELVISFSKQDAVGVQFSHRDALV 107

Query: 224 LSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLTGLGAMLVWPLGML 403
           +SV +    +RR+++D GSS ++MF   F++L      +      LTG      WP+G +
Sbjct: 108 VSVQVANCLMRRVMIDEGSSAEVMFLDAFRQLKLGDNHIKPSRAPLTGFEGTETWPMGEI 167

Query: 404 RETVQLGGKSVEVDFLVVNVPSSYNVILGRPWLH 505
              V +  K+VE+DF+VV+ PSSYN ILGR W+H
Sbjct: 168 TLLVTIADKTVEIDFVVVDRPSSYNAILGRDWMH 201


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 2/169 (1%)
 Frame = +2

Query: 5   DKSIQRKVIHVVESSSRGTTATRHAYRSRCQALEVLRAE--EGPPKRHRVSSDHLLSFSE 178
           D  + R+ ++++     G TA R ++RS  + ++   A     P  +        L+F+ 
Sbjct: 282 DAPVPRRRVNMIMG---GLTACRDSFRSIKEYIKSGAATLWSSPATKEMTP----LTFTS 334

Query: 179 EDLVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQ 358
           EDL G+ +PHNDPL++ + IGE +V RIL+D+GSSV+++F  + +K+      +      
Sbjct: 335 EDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRP 394

Query: 359 LTGLGAMLVWPLGMLRETVQLGGKSVEVDFLVVNVPSSYNVILGRPWLH 505
           LTG     +   G ++  + LGG +    F+VV+ P+ YN+ILG PW+H
Sbjct: 395 LTGFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIH 443


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 45/114 (39%), Positives = 68/114 (59%)
 Frame = +2

Query: 164 LSFSEEDLVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLV 343
           +SF++ DL GL  PHNDPL++ + I +  V R+L+D+GSSVDL+F  +   +      + 
Sbjct: 600 ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 659

Query: 344 QVSTQLTGLGAMLVWPLGMLRETVQLGGKSVEVDFLVVNVPSSYNVILGRPWLH 505
            VS  L G     V  +G ++  + +GG    V F+V+  P+ YNVILG PW+H
Sbjct: 660 PVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIH 713


>gb|ABA99142.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1342

 Score = 92.4 bits (228), Expect = 5e-17
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
 Frame = +2

Query: 17  QRKVIHVVESSSRGTTATRHAYRSRCQALE-VLRAEEGPPKRHRVSSDHLLSFSEEDLVG 193
           QR+VI V+  +   T  ++   + + + +  +  A EG P+      + L+SF  ED  G
Sbjct: 507 QRRVIQVITRADLPTQLSKRQKKMQIRTVHSITSAGEGAPQY----LNQLISFGPEDAKG 562

Query: 194 LQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLTGLG 373
           + +PH DPL++S  I  F+VRRILVD GSS D++F   + K+G   + L      L G G
Sbjct: 563 VMLPHQDPLVISTEIAGFEVRRILVDGGSSADVIFAEAYAKMGFPTQALTPAPASLCGFG 622

Query: 374 AMLVWPLGMLRETVQLGG----KSVEVDFLVVNVPSSYNVILGRPWLH 505
              V  LG     +  G     +  +V F VV++P +YN I GR  L+
Sbjct: 623 GEAVQVLGQALSMIAFGSGENRREEQVLFDVVDIPYNYNGIFGRATLN 670


>gb|AAC28207.1| T24H24.13 gene product [Arabidopsis thaliana]
           gi|7267161|emb|CAB77873.1| putative transposon protein
           [Arabidopsis thaliana]
          Length = 681

 Score = 92.4 bits (228), Expect = 5e-17
 Identities = 43/124 (34%), Positives = 70/124 (56%)
 Frame = +2

Query: 134 KRHRVSSDHLLSFSEEDLVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFK 313
           K   +  +H ++F E +   L  PH+D L++ + +G +++  I++D+GSSVD++F+  FK
Sbjct: 511 KSPMMGPNHQITFWESETTDLNKPHDDALVIRIDVGNYELSHIMIDTGSSVDVLFYDAFK 570

Query: 314 KLGKAQEDLVQVSTQLTGLGAMLVWPLGMLRETVQLGGKSVEVDFLVVNVPSSYNVILGR 493
           ++G    +L    T LTG      + LG ++      G      FLVVN  + +N ILGR
Sbjct: 571 RMGHLDSELQGRKTPLTGFAGDTTFSLGTIQLPTIARGVRRLTSFLVVNKKAPFNAILGR 630

Query: 494 PWLH 505
           PWLH
Sbjct: 631 PWLH 634


>emb|CAE76024.1| B1292H11.10 [Oryza sativa Japonica Group]
          Length = 1326

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 5/171 (2%)
 Frame = +2

Query: 8    KSIQRKVIHVVESSSRGTTATRHAYRSRCQAL-EVLRAEEGPPKRHRVSSDHLLSFSEED 184
            + IQR+VI V+  +      ++   + + + +  ++ A +G P+      +  +SF  ED
Sbjct: 649  QDIQRRVIQVITRADPPVQQSKRQKKMQLRTVYNIIAAGKGAPRY----LNQQISFGPED 704

Query: 185  LVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLT 364
            + G+  PH DPL++S  +  F+VRRILVD GSS D++F   + K+G     L +    L 
Sbjct: 705  VEGVLFPHQDPLVISAKVAGFEVRRILVDRGSSADVIFAEAYAKMGLPTLALTEAPASLR 764

Query: 365  GLGAMLVWPLGMLRETVQLG----GKSVEVDFLVVNVPSSYNVILGRPWLH 505
            G G   V  LG ++  +  G     +  ++ F VVN+P +YN I GR  L+
Sbjct: 765  GFGGKAVQVLGQVQLVIAFGTGENRREEQILFDVVNIPYNYNAIFGRATLN 815


>gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1767

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
 Frame = +2

Query: 17   QRKVIHVVESSSRGTTATRHAYRSRCQALE-VLRAEEGPPKRHRVSSDHLLSFSEEDLVG 193
            QR+VI V+  +   +  ++   + + + +  +  A EG P+      + L+SF  ED  G
Sbjct: 637  QRRVIQVITRADPPSLLSKRQRKMQIRMVHSITSAGEGAPQY----VNQLISFGPEDAEG 692

Query: 194  LQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLTGLG 373
            +  PH DPL++S  I  F+VRRILVD GSS D++F   + K+G   + L    T L G G
Sbjct: 693  VLFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQTLAPAPTSLRGFG 752

Query: 374  AMLVWPLGMLRETVQLGG----KSVEVDFLVVNVPSSYNVILGRPWLH 505
               V  LG     +  G     +  ++ F VV++P +YN I GR  L+
Sbjct: 753  GEAVQVLGQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLN 800


>gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 672

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 44/114 (38%), Positives = 74/114 (64%)
 Frame = +2

Query: 164 LSFSEEDLVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLV 343
           +SF+EE+   L+ PH+D L++++ +  F+V RIL+D+GSSVDL+F S  +K+G ++ D+V
Sbjct: 515 ISFNEEETRHLERPHDDALVITLDVANFEVSRILIDTGSSVDLIFLSTLEKMGISRGDIV 574

Query: 344 QVSTQLTGLGAMLVWPLGMLRETVQLGGKSVEVDFLVVNVPSSYNVILGRPWLH 505
              + L    +     LG ++  V     S  VDF+V + P++YN+ILG PW++
Sbjct: 575 GPPSPLVAFTSESAMSLGTIKLPVLAKKVSKIVDFVVFDKPAAYNIILGTPWIY 628


>emb|CAB45815.1| putative protein [Arabidopsis thaliana] gi|7268845|emb|CAB79049.1|
           putative protein [Arabidopsis thaliana]
          Length = 853

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 44/125 (35%), Positives = 76/125 (60%)
 Frame = +2

Query: 131 PKRHRVSSDHLLSFSEEDLVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLF 310
           P+   +S + ++ F+ ED  G+Q PHND L++ + + +FDV RIL+D+GSSV+LMF    
Sbjct: 453 PEAEPLSQEPII-FTSEDASGIQHPHNDALVIKLVMEDFDVERILIDTGSSVNLMFLKTL 511

Query: 311 KKLGKAQEDLVQVSTQLTGLGAMLVWPLGMLRETVQLGGKSVEVDFLVVNVPSSYNVILG 490
            K+G ++  ++     +TG        +G ++  VQ+GG + +  F+V++    YN ILG
Sbjct: 512 FKMGISESKIMPKIRPMTGYDGEAKMSIGEIKLQVQVGGITQKTKFVVIDSEPIYNAILG 571

Query: 491 RPWLH 505
            PW++
Sbjct: 572 SPWIY 576


>emb|CAN77145.1| hypothetical protein VITISV_038340 [Vitis vinifera]
          Length = 539

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 50/117 (42%), Positives = 67/117 (57%)
 Frame = +2

Query: 155 DHLLSFSEEDLVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQE 334
           D  + F   D   +  PH D LIL +GIG+FDVRRIL+D G+SVDL+  S+  ++G    
Sbjct: 364 DGTIVFPPIDPTRILQPHRDALILFLGIGDFDVRRILIDPGNSVDLLQASVINQMGLELS 423

Query: 335 DLVQVSTQLTGLGAMLVWPLGMLRETVQLGGKSVEVDFLVVNVPSSYNVILGRPWLH 505
           DL      L+G        LG +  +VQ+G  ++ V FLVV   S +N ILGR WLH
Sbjct: 424 DLENPGLILSGFNGAATTSLGDIMLSVQVGPVTLNVQFLVVGDLSPFNAILGRTWLH 480


>gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1475

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
 Frame = +2

Query: 17  QRKVIHVVESSSRGTTATRHAYRSRCQALE-VLRAEEGPPKRHRVSSDHLLSFSEEDLVG 193
           QR+VI V+  +      ++   + + +A+  +  A EG P+      + L+SF  ED  G
Sbjct: 361 QRRVIQVITRADPPGHLSKRQKKMQIRAVHSITSAGEGAPQY----VNQLISFGPEDAEG 416

Query: 194 LQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLTGLG 373
           +  PH DPL++S  I  F+VRRI VD GSS D++F   + K+G   + L      L G G
Sbjct: 417 VMFPHQDPLVISAEIAGFEVRRIQVDGGSSADVIFAEAYAKMGLPTQALTPAPASLRGFG 476

Query: 374 AMLVWPLGMLRETVQLGG----KSVEVDFLVVNVPSSYNVILGRPWLH 505
              V  LG     +  G     +  +V F VV++P +YN ILGR  L+
Sbjct: 477 REAVQVLGQALLLIAFGSGESRREEQVLFDVVDIPYNYNAILGRATLN 524


>gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 504

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
 Frame = +2

Query: 152 SDHLLSFSEEDLVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQ 331
           S+ ++SF  ED  G+  PH DPL++SV I + +V+R+LVD GSS D++F+  FKK+   +
Sbjct: 84  SNTVISFGPEDAEGILFPHQDPLVISVEITQCEVQRVLVDGGSSADVLFYDAFKKMQIPE 143

Query: 332 EDLVQVSTQLTGLGAMLVWPLGMLRETVQLGG----KSVEVDFLVVNVPSSYNVILGR 493
           + L      L G G   V  +G +   V  GG    +  EV F VV++P  YN ILGR
Sbjct: 144 DRLTHAGIPLQGFGGQQVHAIGKISLQVVFGGGENKRREEVVFDVVDMPYQYNAILGR 201


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
 Frame = +2

Query: 152 SDHLLSFSEEDLVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQ 331
           S+ ++SF  ED  G+  PH DPL++SV I + +V+R+LVD GSS D++F+  FKK+   +
Sbjct: 250 SNTVISFGPEDAEGILFPHQDPLVISVEIAQCEVQRVLVDGGSSADVLFYDAFKKMQIPE 309

Query: 332 EDLVQVSTQLTGLGAMLVWPLGMLRETVQLGG----KSVEVDFLVVNVPSSYNVILGR 493
           + L      L G G   V  +G +   V  GG    +  EV F VV++P  YN +LGR
Sbjct: 310 DRLTHAGIPLQGFGGHQVHTIGKISLQVVFGGGENKRREEVVFDVVDMPYQYNAVLGR 367


>gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1722

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
 Frame = +2

Query: 17  QRKVIHVVESSSRGTTATRHAYRSRCQALE-VLRAEEGPPKRHRVSSDHLLSFSEEDLVG 193
           QR+VI V+  +   +  ++   + + + +  +  A EG P+      + L+ F  ED  G
Sbjct: 472 QRRVIQVITRADPPSQLSKRQKKMQIRMVHSITSAGEGAPQY----LNQLIYFGPEDAEG 527

Query: 194 LQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLTGLG 373
           +  PH DPL++S  I  F+VRRILVD GSS D++F   + K+G   + L      L G G
Sbjct: 528 VMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFG 587

Query: 374 AMLVWPLGMLRETVQLGG----KSVEVDFLVVNVPSSYNVILGRPWLH 505
              V  LG     +  G     +  +V F VV++P +YN I GR  L+
Sbjct: 588 GEAVQVLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNTIFGRATLN 635


>gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1735

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
 Frame = +2

Query: 17  QRKVIHVVESSSRGTTATRHAYRSRCQALE-VLRAEEGPPKRHRVSSDHLLSFSEEDLVG 193
           QR+VI V+  +   +  ++   + + + +  +  A EG P+      + L+ F  ED  G
Sbjct: 485 QRRVIQVITRADPPSQLSKRQKKMQIRMVHSITSAGEGAPQY----LNQLIYFGPEDAEG 540

Query: 194 LQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLTGLG 373
           +  PH DPL++S  I  F+VRRILVD GSS D++F   + K+G   + L      L G G
Sbjct: 541 VMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFG 600

Query: 374 AMLVWPLGMLRETVQLGG----KSVEVDFLVVNVPSSYNVILGRPWLH 505
              V  LG     +  G     +  +V F VV++P +YN I GR  L+
Sbjct: 601 GEAVQVLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNTIFGRATLN 648


>gb|EMJ26121.1| hypothetical protein PRUPE_ppa021786mg [Prunus persica]
          Length = 238

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 48/144 (33%), Positives = 80/144 (55%)
 Frame = +2

Query: 74  HAYRSRCQALEVLRAEEGPPKRHRVSSDHLLSFSEEDLVGLQVPHNDPLILSVGIGEFDV 253
           +A   R Q  E   A+    KR +     ++SF+++DL G+Q PHND LI+   IG   V
Sbjct: 36  NAIHGRSQQPEGQLAQARTEKR-QAEKVEIISFTQQDLEGIQFPHNDALIIDFQIGNSKV 94

Query: 254 RRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLTGLGAMLVWPLGMLRETVQLGGKS 433
           + +++D  SS ++MF++ FK++   +  +     QL          +G +   V   GK+
Sbjct: 95  KSVMIDDRSSAEVMFWNTFKRIKLDENGIRPNPIQLLTFEGSKALAIGDVTLPVIAAGKT 154

Query: 434 VEVDFLVVNVPSSYNVILGRPWLH 505
           + V F+VV+ P++YNVI+GR W+H
Sbjct: 155 LLVTFVVVDAPNAYNVIMGRDWIH 178


>gb|AAV32123.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1242

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 5/168 (2%)
 Frame = +2

Query: 17   QRKVIHVVESSSRGTTATRHAYRSRCQALE-VLRAEEGPPKRHRVSSDHLLSFSEEDLVG 193
            QR+VI V+  +   +  ++   + + + +  +  A EG P+      + L+SF  ED  G
Sbjct: 564  QRRVIQVITRADPPSQLSKRQRKMQIRMVHSITSAGEGAPQY----VNQLISFGPEDAEG 619

Query: 194  LQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLTGLG 373
            +  PH DPL++S  I  F+VRRILVD GSS D++F   + K+G   + L    T L G  
Sbjct: 620  VLFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAPTSLRGFI 679

Query: 374  AMLVWPLGMLRETVQLG-GKSVEVD---FLVVNVPSSYNVILGRPWLH 505
               V  LG     +  G G++  V+   F VVN+P +YN I GR  L+
Sbjct: 680  VEAVQVLGQAFLLIAFGSGENRRVEQILFDVVNIPYNYNAIFGRATLN 727


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 5/167 (2%)
 Frame = +2

Query: 8    KSIQRKVIHVVES-SSRGTTATRHAYRSRCQALEVLRAEEGPPKRHRVSSDHLLSFSEED 184
            + + ++VI+ +   SS G  + R       Q   V  + +  P    V S  ++SF  ED
Sbjct: 687  EEVPKRVINAITGGSSLGVESKRQRKAYVRQVNHVGTSYQSNPP---VYSKTVISFGPED 743

Query: 185  LVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLT 364
              G+  PH DPL++SV I + +V+R+L+D GSS D++F+  FKK+   ++ L      L 
Sbjct: 744  AEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQ 803

Query: 365  GLGAMLVWPLGMLRETVQLG-GKSV---EVDFLVVNVPSSYNVILGR 493
            G G   V  +G +   V  G G +V   E+ F VV++P  YN ILGR
Sbjct: 804  GFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGR 850


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
 Frame = +2

Query: 8    KSIQRKVIHVVES-SSRGTTATRH--AYRSRCQALEVLRAEEGPPKRHRVSSDHLLSFSE 178
            + + ++VI+ +   SS G  + R   AY  +   +  +   + P     V S  ++SF  
Sbjct: 687  EEVPKRVINAITGGSSLGVESKRQRKAYVRQVNHVGTIYQSKPP-----VYSKTVISFGP 741

Query: 179  EDLVGLQVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQ 358
            ED  G+  PH DPL++SV I + +V+R+L+D GSS D++F+  FKK+   ++ L      
Sbjct: 742  EDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVP 801

Query: 359  LTGLGAMLVWPLGMLRETVQLG-GKSV---EVDFLVVNVPSSYNVILGR 493
            L G G   V  +G +   V  G G +V   E+ F VV++P  YN ILGR
Sbjct: 802  LQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGR 850


>gb|AAO23086.1| putative gag-pol precursor [Oryza sativa Japonica Group]
          Length = 971

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
 Frame = +2

Query: 17   QRKVIHVVESSSRGTTATRHAYRSRCQALEVLRAEEGPPKRHRVSSDHLLSFSEEDLVGL 196
            QR+VI V+   +R     + + R +   +  + +     KR     + L+SF  ED  G+
Sbjct: 669  QRRVIQVI---TRADPPGQLSKRQKKMHIRAVHSITSAGKRAPQYVNQLISFGPEDAEGV 725

Query: 197  QVPHNDPLILSVGIGEFDVRRILVDSGSSVDLMFFSLFKKLGKAQEDLVQVSTQLTGLGA 376
              PH DPL++S  I  F+V RILVD GSS D++F   + K+G   + L      + G G 
Sbjct: 726  MFPHQDPLVISAEIAGFEVWRILVDGGSSADVIFVEAYAKMGLPTQALTPAPASIRGFGG 785

Query: 377  MLVWPLGMLRETVQLGG----KSVEVDFLVVNVPSSYNVILGRPWLH 505
              V  LG     +  G     +  +V F VV++P +YN ILGR  L+
Sbjct: 786  EAVQVLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNAILGRATLN 832