BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00018323
         (559 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300024.2| hypothetical protein POPTR_0001s34720g [Popu...   207   1e-51
gb|EMJ18282.1| hypothetical protein PRUPE_ppa000515mg [Prunus pe...   205   5e-51
gb|EPS67538.1| hypothetical protein M569_07235, partial [Genlise...   202   5e-50
ref|XP_004297960.1| PREDICTED: uncharacterized protein LOC101297...   201   1e-49
ref|XP_002517407.1| conserved hypothetical protein [Ricinus comm...   200   2e-49
emb|CBI34982.3| unnamed protein product [Vitis vinifera]              199   3e-49
ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron sp...   199   3e-49
emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]   199   3e-49
ref|XP_006408495.1| hypothetical protein EUTSA_v10019986mg [Eutr...   198   9e-49
ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplasti...   197   1e-48
gb|EXC45069.1| Chloroplastic group IIA intron splicing facilitat...   196   4e-48
gb|EXB47734.1| Chloroplastic group IIA intron splicing facilitat...   196   4e-48
ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron sp...   196   4e-48
gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]       195   6e-48
ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana] gi|2...   195   6e-48
ref|XP_006296749.1| hypothetical protein CARUB_v10015149mg [Caps...   194   9e-48
ref|XP_006431007.1| hypothetical protein CICLE_v10013715mg [Citr...   194   1e-47
ref|XP_006482481.1| PREDICTED: chloroplastic group IIA intron sp...   194   2e-47
ref|XP_006482480.1| PREDICTED: chloroplastic group IIA intron sp...   194   2e-47
ref|XP_006482479.1| PREDICTED: chloroplastic group IIA intron sp...   194   2e-47

>ref|XP_002300024.2| hypothetical protein POPTR_0001s34720g [Populus trichocarpa]
           gi|550348879|gb|EEE84829.2| hypothetical protein
           POPTR_0001s34720g [Populus trichocarpa]
          Length = 453

 Score =  207 bits (528), Expect = 1e-51
 Identities = 102/179 (56%), Positives = 126/179 (70%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRAKV 180
           VP    +PKYRVG TLD SWSTPENPVP PG+G AIS+ +EL  E KRER E+++G AKV
Sbjct: 96  VPLPNRLPKYRVGQTLDPSWSTPENPVPVPGSGKAISRYHELRREVKRER-EAKKGEAKV 154

Query: 181 XXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVW 360
                             +GI  K+KLK+GKAG+TEGIVNGIHERWR  EVVK+VC+D+ 
Sbjct: 155 PSLAELSLPNEELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLC 214

Query: 361 KLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQNTVVEDD 537
           ++NM+RTHDLLE KTGG+VVWR GSKI+LYRG +YK+PYF  +      +S + V   D
Sbjct: 215 RMNMKRTHDLLERKTGGLVVWRVGSKIVLYRGADYKYPYFLAETSSVNETSPDAVQNID 273


>gb|EMJ18282.1| hypothetical protein PRUPE_ppa000515mg [Prunus persica]
          Length = 1117

 Score =  205 bits (522), Expect = 5e-51
 Identities = 100/180 (55%), Positives = 131/180 (72%), Gaps = 5/180 (2%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRA-- 174
           VP  + +PKYRVGHTLDSSWSTPENPVPEPGTG AI++ +EL  E K++++  + G+   
Sbjct: 94  VPLPQRLPKYRVGHTLDSSWSTPENPVPEPGTGRAIARFHELRREVKKQKELEKTGKKEE 153

Query: 175 KVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDD 354
           +V                  VGI +++KLKIGKAG+TEGIVNGIHE WR  EVVK+VC+D
Sbjct: 154 RVPTLAELSLGKGELRRLTTVGIGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCED 213

Query: 355 VWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYF---KLKKDCAGSSSQNTV 525
           + ++NM+RTHD+LE KTGG+VVWR+GSKI+LYRG NYK+PYF   K+ +D    +S N +
Sbjct: 214 LCRMNMKRTHDMLERKTGGLVVWRSGSKIVLYRGVNYKYPYFLRDKVDEDSTIDTSHNAL 273



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           VG+RMK  L +G+ GV +G +  +H  W+  E+VK++C++     +Q+    LE+++GG+
Sbjct: 588 VGLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTLEAESGGI 647

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  II+YRG NY  P
Sbjct: 648 LVAVERVSKGYAIIVYRGKNYSRP 671


>gb|EPS67538.1| hypothetical protein M569_07235, partial [Genlisea aurea]
          Length = 735

 Score =  202 bits (514), Expect = 5e-50
 Identities = 99/180 (55%), Positives = 126/180 (70%), Gaps = 6/180 (3%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKE------SE 162
           +P    +PKYRVGHTLD+SWSTPENPVPEPG+G+AI + +EL   A  ++++      SE
Sbjct: 80  LPMPSSLPKYRVGHTLDASWSTPENPVPEPGSGNAIQRFHELRRGAMEDKEKEMIKQRSE 139

Query: 163 RGRAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKM 342
             R                     VGI++KQKLK+GKAG+TEGIVNGIHERWR  EVVK+
Sbjct: 140 GKRKTTQSMAELTLSKGDLRRLTTVGIQLKQKLKVGKAGITEGIVNGIHERWRRSEVVKI 199

Query: 343 VCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQNT 522
            CDD+ +LNM+RTHDLLE KTGG+VVWR+GS IILYRG +YK+PYF+  +   GS S+ +
Sbjct: 200 TCDDICRLNMKRTHDLLEKKTGGLVVWRSGSNIILYRGQDYKYPYFQADRMQRGSFSEES 259



 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           VG+RMK  L +G+ GV +G +  +H  W+  E+VK+         + R    LE+++GG+
Sbjct: 573 VGLRMKPFLLMGRLGVFDGTIENMHLHWKYRELVKVCIGHREMKEVHRVARTLEAESGGI 632

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V     R G  II+YRG NY+ P
Sbjct: 633 LVAVEPCRKGYVIIVYRGKNYQRP 656


>ref|XP_004297960.1| PREDICTED: uncharacterized protein LOC101297928 [Fragaria vesca
           subsp. vesca]
          Length = 1169

 Score =  201 bits (511), Expect = 1e-49
 Identities = 100/187 (53%), Positives = 127/187 (67%), Gaps = 11/187 (5%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKR--------ERKE 156
           VP  + +PKYRVGHT+D SWSTPE PVP PGTG AIS+ +E+  E KR         +KE
Sbjct: 89  VPLPETLPKYRVGHTIDPSWSTPEKPVPAPGTGRAISRFHEMRRELKRLEEVEEMERKKE 148

Query: 157 SERGRAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVV 336
            ++   KV                  VGI +K+K+++GKAG+TEGIVNGIHE WR  EVV
Sbjct: 149 GKKKEEKVPTLAEMSLSTAELRRLRTVGIELKKKVRVGKAGITEGIVNGIHENWRRSEVV 208

Query: 337 KMVCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYF---KLKKDCAGS 507
           K+VC+D+ +LNM+RTHDLLE KTGG+VVWR+G+KIILYRG NYK+PYF   K ++D    
Sbjct: 209 KLVCEDLCRLNMKRTHDLLERKTGGLVVWRSGAKIILYRGVNYKYPYFLKGKKREDSTSD 268

Query: 508 SSQNTVV 528
            S + VV
Sbjct: 269 DSGDAVV 275



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           VG++MK  L +G+ GV +G +  +H  W+  E+VK++C++    +  +    LES++GG+
Sbjct: 578 VGLKMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIESAHQVAQTLESESGGI 637

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  II+YRG NY  P
Sbjct: 638 LVAVERVSKGYAIIVYRGKNYIRP 661


>ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
           gi|223543418|gb|EEF44949.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 1009

 Score =  200 bits (508), Expect = 2e-49
 Identities = 100/183 (54%), Positives = 126/183 (68%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRAKV 180
           +P    + KYRVGHTLD SWSTPENPVP PG+G+AI + +EL  + K+ER++ +R  AKV
Sbjct: 92  IPLPNELSKYRVGHTLDPSWSTPENPVPRPGSGNAILRYHELRKQVKKEREDKKR-EAKV 150

Query: 181 XXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVW 360
                             +GI  K+KLK+GKAG+TEGIVNGIHERWR  EVVK+VC+D+ 
Sbjct: 151 PTLAELSLSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLC 210

Query: 361 KLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQNTVVEDDS 540
           ++NM+RTHDLLE KTGG+VVWRAGSKI+LYRG NY +PYF          S NT   D S
Sbjct: 211 RMNMKRTHDLLERKTGGLVVWRAGSKIVLYRGVNYIYPYF---------LSDNTTENDTS 261

Query: 541 LQS 549
           + +
Sbjct: 262 IDA 264



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           VG++MK  L IG+ GV +G +  +H  W+  E+VK++C +     +      LE+++GG+
Sbjct: 590 VGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIICKERSLNAVHEVAQSLEAESGGI 649

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  I++YRG NY+ P
Sbjct: 650 LVAVERVSKGYAIVVYRGKNYQRP 673


>emb|CBI34982.3| unnamed protein product [Vitis vinifera]
          Length = 1028

 Score =  199 bits (507), Expect = 3e-49
 Identities = 96/186 (51%), Positives = 125/186 (67%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRAKV 180
           VP    +PK+RVGHT+D SWS PENPVPEPGTG  I++ +EL  E KRE+K   +   + 
Sbjct: 119 VPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVRKEDERA 178

Query: 181 XXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVW 360
                             +GI++++KLK+GKAG+TEGIVNGIHERWR  EVVK+ C+D+ 
Sbjct: 179 PTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDIC 238

Query: 361 KLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQNTVVEDDS 540
           KLNM+RTHD+LE KTGG+V+WR+GS IILYRG NYK+PYF    +    SS +     DS
Sbjct: 239 KLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHD--ASSDS 296

Query: 541 LQSGDE 558
             + +E
Sbjct: 297 QMNNEE 302



 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           VG+RMK  L +G+ G+ +G V  +H  W+  E+VK++ +     ++      LE+++GG+
Sbjct: 617 VGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGI 676

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  II+YRG NYK P
Sbjct: 677 LVAVERVSKGYAIIMYRGKNYKRP 700


>ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Vitis vinifera]
          Length = 1044

 Score =  199 bits (507), Expect = 3e-49
 Identities = 96/186 (51%), Positives = 125/186 (67%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRAKV 180
           VP    +PK+RVGHT+D SWS PENPVPEPGTG  I++ +EL  E KRE+K   +   + 
Sbjct: 119 VPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVRKEDERA 178

Query: 181 XXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVW 360
                             +GI++++KLK+GKAG+TEGIVNGIHERWR  EVVK+ C+D+ 
Sbjct: 179 PTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDIC 238

Query: 361 KLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQNTVVEDDS 540
           KLNM+RTHD+LE KTGG+V+WR+GS IILYRG NYK+PYF    +    SS +     DS
Sbjct: 239 KLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHD--ASSDS 296

Query: 541 LQSGDE 558
             + +E
Sbjct: 297 QMNNEE 302



 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           VG+RMK  L +G+ G+ +G V  +H  W+  E+VK++ +     ++      LE+++GG+
Sbjct: 617 VGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGI 676

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  II+YRG NYK P
Sbjct: 677 LVAVERVSKGYAIIMYRGKNYKRP 700


>emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
          Length = 1399

 Score =  199 bits (507), Expect = 3e-49
 Identities = 96/186 (51%), Positives = 125/186 (67%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRAKV 180
           VP    +PK+RVGHT+D SWS PENPVPEPGTG  I++ +EL  E KRE+K   +   + 
Sbjct: 311 VPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVRKEDERA 370

Query: 181 XXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVW 360
                             +GI++++KLK+GKAG+TEGIVNGIHERWR  EVVK+ C+D+ 
Sbjct: 371 PTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDIC 430

Query: 361 KLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQNTVVEDDS 540
           KLNM+RTHD+LE KTGG+V+WR+GS IILYRG NYK+PYF    +    SS +     DS
Sbjct: 431 KLNMKRTHDILERKTGGLVIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHD--ASSDS 488

Query: 541 LQSGDE 558
             + +E
Sbjct: 489 QMNNEE 494



 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235  VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
            VG+RMK  L +G+ G+ +G V  +H  W+  E+VK++ +     ++      LE+++GG+
Sbjct: 992  VGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGI 1051

Query: 415  VV----WRAGSKIILYRGPNYKFP 474
            +V       G  II+YRG NYK P
Sbjct: 1052 LVAVERVSKGYAIIMYRGKNYKRP 1075


>ref|XP_006408495.1| hypothetical protein EUTSA_v10019986mg [Eutrema salsugineum]
           gi|557109641|gb|ESQ49948.1| hypothetical protein
           EUTSA_v10019986mg [Eutrema salsugineum]
          Length = 998

 Score =  198 bits (503), Expect = 9e-49
 Identities = 95/184 (51%), Positives = 127/184 (69%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRAKV 180
           VP    +P +RVGHT+D+SWSTP  PVP+PG+G+AIS+ +EL    K+E+K   +   KV
Sbjct: 98  VPLPNQLPIHRVGHTIDTSWSTPSYPVPKPGSGTAISRYHELKRVWKKEKKVERKNEEKV 157

Query: 181 XXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVW 360
                              GIR+ +KLKIGKAG+TEGIVNGIHERWR+ EVVK+ C+D+ 
Sbjct: 158 PSLAELTLPPAELRRLRSAGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDIS 217

Query: 361 KLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQNTVVEDDS 540
           ++NM+RTHD+LE+KTGG+V+WR+GSKI+LYRG NY++PYF   +D A  SS  T     S
Sbjct: 218 RMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDQDLAHDSSVETASGASS 277

Query: 541 LQSG 552
           +  G
Sbjct: 278 MIQG 281



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 28/84 (33%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           +G++MK  L +G+ GV +G +  +H  W+  E+VK++C++    + +   ++LE+++GG+
Sbjct: 593 IGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEKSIESAREVAEILEAESGGI 652

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  II+YRG NY+ P
Sbjct: 653 LVAVEMVSKGYAIIVYRGKNYERP 676


>ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
           splicing facilitator CRS1, chloroplastic-like [Cucumis
           sativus]
          Length = 1053

 Score =  197 bits (502), Expect = 1e-48
 Identities = 98/168 (58%), Positives = 119/168 (70%), Gaps = 8/168 (4%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAK--------RERKE 156
           VP    +PKYRVGHT+DSSWSTPENPVPEPGTG+AI + +EL GE +        RE+K 
Sbjct: 113 VPLPNQLPKYRVGHTIDSSWSTPENPVPEPGTGTAIKRFHELRGEVQKWKKRDGVREKKR 172

Query: 157 SERGRAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVV 336
            ER  +                    +GIR+K+KL +GKAG+TEGIVN IHE WR  EVV
Sbjct: 173 EERAPSLAELSLTEEELGRLRT----IGIRLKKKLNVGKAGITEGIVNTIHEFWRRSEVV 228

Query: 337 KMVCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYF 480
           K+ C+D+ +LNM+RTHDLLE KTGG+VVWR+GSKIILYRGPNY +PYF
Sbjct: 229 KIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSKIILYRGPNYIYPYF 276



 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDL---LESKT 405
           VG+RMK  L +G+ GV +G V  +H  W+  E+VK++ ++    + +  HD+   LE+++
Sbjct: 612 VGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNE---RSFKTVHDVARTLEAES 668

Query: 406 GGMVV----WRAGSKIILYRGPNYKFP 474
           GG++V     +    II++RG NYK P
Sbjct: 669 GGILVAVERVKRSFAIIIFRGKNYKRP 695


>gb|EXC45069.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
           notabilis]
          Length = 966

 Score =  196 bits (497), Expect = 4e-48
 Identities = 92/179 (51%), Positives = 126/179 (70%), Gaps = 8/179 (4%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERG---- 168
           VP    +PK RVGHT+D+SWS+PENPVPEPG+G+AI +  EL  E +R+R+E  +     
Sbjct: 90  VPLPHRLPKQRVGHTIDASWSSPENPVPEPGSGTAIKRFRELKTEVRRQRREERKESAAN 149

Query: 169 ----RAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVV 336
               R +V                  +GI +++K+K+GKAG+TEGIVNGIHERWR  EVV
Sbjct: 150 AREERERVPTLAELRLPPEELRRLRTLGIGLRKKVKVGKAGITEGIVNGIHERWRQSEVV 209

Query: 337 KMVCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSS 513
           K+ C+D+ ++NM+RTHDLLE KTGG+VVWR+GSKI+LYRG  YK+PYF + KD + +++
Sbjct: 210 KIECEDICRMNMKRTHDLLEKKTGGLVVWRSGSKIVLYRGIKYKYPYFFVGKDASHTAT 268



 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           +G+RMK  L +G+ GV +G +  +H  W+  E+VK++ ++     + +    LE+++GG+
Sbjct: 590 IGLRMKPFLLLGRRGVFDGTIENMHLHWKYRELVKVISNEKSIEAVHQVAQTLEAESGGI 649

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  II+YRG NY+ P
Sbjct: 650 LVAVERESKGYAIIVYRGKNYERP 673


>gb|EXB47734.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
           notabilis]
          Length = 449

 Score =  196 bits (497), Expect = 4e-48
 Identities = 92/179 (51%), Positives = 126/179 (70%), Gaps = 8/179 (4%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERG---- 168
           VP    +PK RVGHT+D+SWS+PENPVPEPG+G+AI +  EL  E +R+R+E  +     
Sbjct: 90  VPLPHRLPKQRVGHTIDASWSSPENPVPEPGSGTAIKRFRELKTEVRRQRREERKESAAN 149

Query: 169 ----RAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVV 336
               R +V                  +GI +++K+K+GKAG+TEGIVNGIHERWR  EVV
Sbjct: 150 AREERERVPTLAELRLPPEELRRLRTLGIGLRKKVKVGKAGITEGIVNGIHERWRQSEVV 209

Query: 337 KMVCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSS 513
           K+ C+D+ ++NM+RTHDLLE KTGG+VVWR+GSKI+LYRG  YK+PYF + KD + +++
Sbjct: 210 KIECEDICRMNMKRTHDLLEKKTGGLVVWRSGSKIVLYRGIKYKYPYFFVGKDASHTAT 268


>ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Cucumis sativus]
          Length = 1032

 Score =  196 bits (497), Expect = 4e-48
 Identities = 97/168 (57%), Positives = 118/168 (70%), Gaps = 8/168 (4%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAK--------RERKE 156
           VP    +PKYRVGHT+DSSWS PENPVPEPGTG+AI + +EL GE +        RE+K 
Sbjct: 93  VPLPNQLPKYRVGHTIDSSWSMPENPVPEPGTGTAIKRFHELRGEVQKWKKRDGVREKKR 152

Query: 157 SERGRAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVV 336
            ER  +                    +GIR+K+KL +GKAG+TEGIVN IHE WR  EVV
Sbjct: 153 EERAPSLAELSLTEEELGRLRT----IGIRLKKKLNVGKAGITEGIVNTIHEYWRRSEVV 208

Query: 337 KMVCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYF 480
           K+ C+D+ +LNM+RTHDLLE KTGG+VVWR+GSKIILYRGPNY +PYF
Sbjct: 209 KIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSKIILYRGPNYIYPYF 256



 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDL---LESKT 405
           VG+RMK  L +G+ GV +G V  +H  W+  E+VK++ ++    + +  HD+   LE+++
Sbjct: 591 VGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNE---RSFKTVHDVARTLEAES 647

Query: 406 GGMVV----WRAGSKIILYRGPNYKFP 474
           GG++V     +    II++RG NYK P
Sbjct: 648 GGILVAVERVKRSFAIIIFRGKNYKRP 674


>gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
          Length = 1020

 Score =  195 bits (496), Expect = 6e-48
 Identities = 96/183 (52%), Positives = 129/183 (70%), Gaps = 5/183 (2%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRAKV 180
           VP  K +P +RVGHT+D+SWSTP  PVP+PG+G+AIS+ +EL    K+E +   +   KV
Sbjct: 99  VPLPKQLPIHRVGHTIDTSWSTPSYPVPKPGSGTAISRYHELKRVWKKETEMERKKEEKV 158

Query: 181 XXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVW 360
                             VGIR+ +KLKIGKAG+TEGIVNGIHERWR+ EVVK+ C+D+ 
Sbjct: 159 PSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDIS 218

Query: 361 KLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCA-----GSSSQNTV 525
           ++NM+RTHD+LE+KTGG+V+WR+GSKI+LYRG NY++PYF   +D A     G+SS +  
Sbjct: 219 RMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQG 278

Query: 526 VED 534
           V D
Sbjct: 279 VVD 281



 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           +G++MK  L +G+ GV +G +  +H  W+  E+VK++C++       +  ++LE+++GG+
Sbjct: 599 IGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGI 658

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  II+YRG NY+ P
Sbjct: 659 LVAVEMVSKGYAIIVYRGKNYERP 682


>ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
           gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis
           thaliana] gi|37202002|gb|AAQ89616.1| At3g01370
           [Arabidopsis thaliana] gi|332640136|gb|AEE73657.1| CRM
           family member 2 [Arabidopsis thaliana]
          Length = 1011

 Score =  195 bits (496), Expect = 6e-48
 Identities = 96/183 (52%), Positives = 129/183 (70%), Gaps = 5/183 (2%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRAKV 180
           VP  K +P +RVGHT+D+SWSTP  PVP+PG+G+AIS+ +EL    K+E +   +   KV
Sbjct: 99  VPLPKQLPIHRVGHTIDTSWSTPSYPVPKPGSGTAISRYHELKRVWKKETEMERKKEEKV 158

Query: 181 XXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVW 360
                             VGIR+ +KLKIGKAG+TEGIVNGIHERWR+ EVVK+ C+D+ 
Sbjct: 159 PSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDIS 218

Query: 361 KLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCA-----GSSSQNTV 525
           ++NM+RTHD+LE+KTGG+V+WR+GSKI+LYRG NY++PYF   +D A     G+SS +  
Sbjct: 219 RMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQG 278

Query: 526 VED 534
           V D
Sbjct: 279 VVD 281



 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           +G++MK  L +G+ GV +G +  +H  W+  E+VK++C++       +  ++LE+++GG+
Sbjct: 590 IGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGI 649

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  II+YRG NY+ P
Sbjct: 650 LVAVEMVSKGYAIIVYRGKNYERP 673


>ref|XP_006296749.1| hypothetical protein CARUB_v10015149mg [Capsella rubella]
           gi|482565458|gb|EOA29647.1| hypothetical protein
           CARUB_v10015149mg [Capsella rubella]
          Length = 1021

 Score =  194 bits (494), Expect = 9e-48
 Identities = 94/181 (51%), Positives = 125/181 (69%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRERKESERGRAKV 180
           VP  K +P  RVGHT+D+SWSTP  PVP PG+G+AIS+ +EL    K+E +   + + KV
Sbjct: 102 VPLPKQLPINRVGHTIDTSWSTPSYPVPNPGSGTAISRYHELKRVWKKETEIERKKQEKV 161

Query: 181 XXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVW 360
                              GIR+ +KLKIGKAG+TEGIVNGIHERWR+ EVVK+VC+D+ 
Sbjct: 162 PSLAELTLPAAELRRLRSAGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIVCEDIS 221

Query: 361 KLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQNTVVEDDS 540
           ++NM+RTHD+LE+KTGG+V+WR+GSKI+LYRG NY++PYF   +D    SS  T     S
Sbjct: 222 RMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLGHDSSVETASGGSS 281

Query: 541 L 543
           +
Sbjct: 282 M 282



 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
 Frame = +1

Query: 235 VGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKMVCDDVWKLNMQRTHDLLESKTGGM 414
           +G++MK  L +G+ GV +G +  +H  W+  E+VK++C++          ++LE+++GG+
Sbjct: 598 IGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEHSIEAAHEVAEILEAESGGI 657

Query: 415 VV----WRAGSKIILYRGPNYKFP 474
           +V       G  II+YRG NY+ P
Sbjct: 658 LVAVEMVSKGYAIIVYRGKNYERP 681


>ref|XP_006431007.1| hypothetical protein CICLE_v10013715mg [Citrus clementina]
           gi|557533064|gb|ESR44247.1| hypothetical protein
           CICLE_v10013715mg [Citrus clementina]
          Length = 1062

 Score =  194 bits (493), Expect = 1e-47
 Identities = 100/191 (52%), Positives = 130/191 (68%), Gaps = 10/191 (5%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRER------KESE 162
           +P    IPKYRVGHT+D SWSTPENPVP PGTG+AI + N+L  E  R++      K +E
Sbjct: 108 IPLPHRIPKYRVGHTIDDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNE 167

Query: 163 RGRAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKM 342
           + + +V                  +GI +++KLKIGKAG+TEGIVNGIHERWR  EVVK+
Sbjct: 168 KEK-EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI 226

Query: 343 VCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQ-- 516
           VC+D+ +LNM+RTHD LE KTGG+VVWR+GSKIILYRG +YK+PYF   +     +S   
Sbjct: 227 VCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDD 286

Query: 517 --NTVVEDDSL 543
             N +V+D+ L
Sbjct: 287 LPNQLVDDEGL 297


>ref|XP_006482481.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like isoform X6 [Citrus sinensis]
          Length = 1031

 Score =  194 bits (492), Expect = 2e-47
 Identities = 99/191 (51%), Positives = 130/191 (68%), Gaps = 10/191 (5%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRER------KESE 162
           +P    IPKYRVGHT+D SWSTPENP+P PGTG+AI + N+L  E  R++      K +E
Sbjct: 108 IPLPHRIPKYRVGHTIDDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNE 167

Query: 163 RGRAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKM 342
           + + +V                  +GI +++KLKIGKAG+TEGIVNGIHERWR  EVVK+
Sbjct: 168 KEK-EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI 226

Query: 343 VCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQ-- 516
           VC+D+ +LNM+RTHD LE KTGG+VVWR+GSKIILYRG +YK+PYF   +     +S   
Sbjct: 227 VCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDD 286

Query: 517 --NTVVEDDSL 543
             N +V+D+ L
Sbjct: 287 LPNQLVDDEGL 297


>ref|XP_006482480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like isoform X5 [Citrus sinensis]
          Length = 1045

 Score =  194 bits (492), Expect = 2e-47
 Identities = 99/191 (51%), Positives = 130/191 (68%), Gaps = 10/191 (5%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRER------KESE 162
           +P    IPKYRVGHT+D SWSTPENP+P PGTG+AI + N+L  E  R++      K +E
Sbjct: 108 IPLPHRIPKYRVGHTIDDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNE 167

Query: 163 RGRAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKM 342
           + + +V                  +GI +++KLKIGKAG+TEGIVNGIHERWR  EVVK+
Sbjct: 168 KEK-EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI 226

Query: 343 VCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQ-- 516
           VC+D+ +LNM+RTHD LE KTGG+VVWR+GSKIILYRG +YK+PYF   +     +S   
Sbjct: 227 VCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDD 286

Query: 517 --NTVVEDDSL 543
             N +V+D+ L
Sbjct: 287 LPNQLVDDEGL 297


>ref|XP_006482479.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like isoform X4 [Citrus sinensis]
          Length = 1050

 Score =  194 bits (492), Expect = 2e-47
 Identities = 99/191 (51%), Positives = 130/191 (68%), Gaps = 10/191 (5%)
 Frame = +1

Query: 1   VPNSKLIPKYRVGHTLDSSWSTPENPVPEPGTGSAISKLNELIGEAKRER------KESE 162
           +P    IPKYRVGHT+D SWSTPENP+P PGTG+AI + N+L  E  R++      K +E
Sbjct: 108 IPLPHRIPKYRVGHTIDDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNE 167

Query: 163 RGRAKVXXXXXXXXXXXXXXXXXXVGIRMKQKLKIGKAGVTEGIVNGIHERWRSEEVVKM 342
           + + +V                  +GI +++KLKIGKAG+TEGIVNGIHERWR  EVVK+
Sbjct: 168 KEK-EVPTLAELKLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKI 226

Query: 343 VCDDVWKLNMQRTHDLLESKTGGMVVWRAGSKIILYRGPNYKFPYFKLKKDCAGSSSQ-- 516
           VC+D+ +LNM+RTHD LE KTGG+VVWR+GSKIILYRG +YK+PYF   +     +S   
Sbjct: 227 VCEDLCRLNMKRTHDSLERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDD 286

Query: 517 --NTVVEDDSL 543
             N +V+D+ L
Sbjct: 287 LPNQLVDDEGL 297