BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00018220
         (1273 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   647   0.0  
gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus pe...   632   e-178
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   624   e-176
ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   622   e-175
ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chlor...   620   e-175
gb|ESW19737.1| hypothetical protein PHAVU_006G151200g [Phaseolus...   619   e-175
ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citr...   618   e-174
ref|XP_002304926.2| pseudouridine synthase family protein [Popul...   618   e-174
gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma ...   617   e-174
ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [...   615   e-173
ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chl...   614   e-173
ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chl...   614   e-173
ref|XP_004145102.1| PREDICTED: RNA pseudourine synthase 6, chlor...   610   e-172
ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chlor...   608   e-171
ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chlor...   607   e-171
ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chl...   607   e-171
ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chl...   602   e-169
ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chlor...   597   e-168
ref|XP_004486127.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   595   e-167
ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Caps...   584   e-164

>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  647 bits (1669), Expect = 0.0
 Identities = 300/404 (74%), Positives = 344/404 (85%)
 Frame = +1

Query: 22   ATSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINF 201
            + +T  ++ YPEY RLLPCP   GPPR+EHLVV EGG V DYI++AL+LP L+VADLI+F
Sbjct: 68   SANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLFVADLIHF 127

Query: 202  GAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYV 381
            GAVYYALVCP PPP+AT EQ+RL K+ TAP +L  RPSIKGKT+REAQKTFRI +V+E+V
Sbjct: 128  GAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRITDVNEFV 187

Query: 382  EPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFA 561
            E GTYLRVHVHPKRFPRCYEIDWKSRI+AVTESYVVLDKPAGTSVGGT+DNIEESCATFA
Sbjct: 188  EAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFA 247

Query: 562  TRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTG 741
            TRALGLT+PL TTHQIDNCTEGCVVLARTKEYCSVFH KIRE            +P+  G
Sbjct: 248  TRALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAAAPMPIG 307

Query: 742  IITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEF 921
            I+THYMRP N+APRLISE++I+GW LCQLEVL+CKEVPWPS + EEKY I+  GWP+K  
Sbjct: 308  IVTHYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDRGWPLKNS 367

Query: 922  AYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDA 1101
            A++C INLLTGRTHQIRAQLA+CGAPIVGDSMYMPA++AE  SPG+NPFGK++KKY  + 
Sbjct: 368  AFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYKKKYTTEN 427

Query: 1102 DKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWW 1233
            D+   V  WIA HGKEP +AIGLQA QISWDDG+HFYKAGSPWW
Sbjct: 428  DRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus persica]
          Length = 477

 Score =  632 bits (1629), Expect = e-178
 Identities = 292/404 (72%), Positives = 339/404 (83%)
 Frame = +1

Query: 25   TSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINFG 204
            TS   ++ YPEY RLLPCP   GPPR+EHLVV EGG V +YI + L+LP  +VADLI+FG
Sbjct: 72   TSVSSVNGYPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKTLDLPPQFVADLIHFG 131

Query: 205  AVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYVE 384
            AVYYALVCP PPPTAT EQ+R+ K+ TAP +L NR SIKGKTVREAQKTFRI + DE+VE
Sbjct: 132  AVYYALVCPKPPPTATPEQMRVFKEVTAPSVLKNRASIKGKTVREAQKTFRITHADEFVE 191

Query: 385  PGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFAT 564
             GTYLRVHVHPKRFPRCY+IDWKSRI+AV+E +VVLDKPAGT+VGGT+DNIEESCATFAT
Sbjct: 192  AGTYLRVHVHPKRFPRCYDIDWKSRIIAVSEEFVVLDKPAGTTVGGTTDNIEESCATFAT 251

Query: 565  RALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTGI 744
            RALGLT+PL TTHQIDNCTEGCVVLARTKEYCSVFH KIRE            +PV TGI
Sbjct: 252  RALGLTTPLNTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALAAAPVPTGI 311

Query: 745  ITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEFA 924
            ITHYMRP N+APRLISE++IE W LCQLEV++CKE+PWP+AV EEKY ++ CGWP K++A
Sbjct: 312  ITHYMRPINVAPRLISEDFIERWSLCQLEVMECKEIPWPNAVVEEKYCVEDCGWPSKDYA 371

Query: 925  YECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDAD 1104
            YEC INLLTGRTHQ+RAQLA+CGAPIVGDSMYMPA++AE  SPG+NPFG+++K Y  + D
Sbjct: 372  YECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAVAEMESPGLNPFGQYKKHYTTEND 431

Query: 1105 KTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            K   V  WIA HGKEP +AIGLQA QISWDDG+H ++A +PWWR
Sbjct: 432  KETAVAEWIARHGKEPNVAIGLQACQISWDDGKHTFEARAPWWR 475


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 476

 Score =  624 bits (1609), Expect = e-176
 Identities = 290/404 (71%), Positives = 341/404 (84%)
 Frame = +1

Query: 25   TSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINFG 204
            T+T  ++   +YDRLLPCP    PPRIEHLVV E G V DYI +AL+LP L+VADLI+FG
Sbjct: 69   TNTSCVNGNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFVADLIDFG 128

Query: 205  AVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYVE 384
            AV+YALVCP PP TAT EQIRL +++TAP +L  R SIKGKTVREAQKTFRI +VD+Y+E
Sbjct: 129  AVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRITHVDQYLE 188

Query: 385  PGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFAT 564
             GTYLRVHVHPKRFPRCY+IDWKSRI+AVT+ YVVLDKPAGTSVGGT+DNIEESCATFAT
Sbjct: 189  AGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESCATFAT 248

Query: 565  RALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTGI 744
            RALGLT+PL TTHQIDNCTEGCVVLAR+KEYCSVFH KIRE            SPV  G+
Sbjct: 249  RALGLTTPLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASPVPVGV 308

Query: 745  ITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEFA 924
            I +YMRP N+APRL+SEE++ GW LCQLEVL+C++VPWP A  EEKYS++ CGWP K+FA
Sbjct: 309  IKNYMRPVNIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWPSKDFA 368

Query: 925  YECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDAD 1104
            YEC INLLTGRTHQIRAQLA+ GAP+VGDSMYMPA++AE A+PG+NPFGKH+K+Y N++D
Sbjct: 369  YECKINLLTGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRKQYTNESD 428

Query: 1105 KTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            ++  V  W+A HGKEP +AIGLQA +ISWD+G+H YKAGSPWWR
Sbjct: 429  ESMAVAEWVAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472


>ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
            chloroplastic-like [Cucumis sativus]
          Length = 475

 Score =  622 bits (1604), Expect = e-175
 Identities = 292/411 (71%), Positives = 333/411 (81%)
 Frame = +1

Query: 13   TITATSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADL 192
            T+   +    + YP+Y RLLPCP    PPR+EH+VV E G V +YI ++LNLP LYVADL
Sbjct: 64   TVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADL 123

Query: 193  INFGAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVD 372
            I+FGAVYYALVCP PP TAT EQIRL K  T P  L  R SIKGKTVREAQKTFRI +VD
Sbjct: 124  IHFGAVYYALVCPQPPKTATPEQIRLFKNXTEPSFLKGRKSIKGKTVREAQKTFRITHVD 183

Query: 373  EYVEPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCA 552
            E+VE GTYLRVHVHPKRFPRCYEIDWKSRI+AVTESYVVLDKPAGTSVGGT+DNIEESCA
Sbjct: 184  EFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCA 243

Query: 553  TFATRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPV 732
            TFATRALGLTSPL TTHQIDNCTEGCV+ ARTKEYCS+FH KIRE            +PV
Sbjct: 244  TFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPV 303

Query: 733  RTGIITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPI 912
              GIITHYMRP N+APRL+S++ I+GWI+CQLEVL+C+EV WP A TE KY ++ CGWP 
Sbjct: 304  PMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADTEAKYRVEDCGWPS 363

Query: 913  KEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYA 1092
            K+ AYEC INLLTGRTHQIRAQLA CGAP+VGDSMYMPA +AE  SPG+NPFGK +K+Y 
Sbjct: 364  KKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYT 423

Query: 1093 NDADKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR*EK 1245
            N+ DK  +V  W ALHGKEPA+AIGLQA++ISWD  +H Y AG+PWWR E+
Sbjct: 424  NEEDKETSVAEWSALHGKEPAVAIGLQAYEISWDSREHIYNAGTPWWRQEQ 474


>ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
            sativus]
          Length = 475

 Score =  620 bits (1598), Expect = e-175
 Identities = 291/411 (70%), Positives = 333/411 (81%)
 Frame = +1

Query: 13   TITATSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADL 192
            T+   +    + YP+Y RLLPCP    PPR+EH+VV E G V +YI ++LNLP LYVADL
Sbjct: 64   TVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADL 123

Query: 193  INFGAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVD 372
            I+FGAVYYALVCP PP TAT EQIRL K++T P  L  R SIKGKTVREAQKTFRI +VD
Sbjct: 124  IHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVD 183

Query: 373  EYVEPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCA 552
            E+VE GTYLRVHVHPKRFPRCYEIDWKSRI+AVTESYVVLDKPAGTSVGGT+DNIEESCA
Sbjct: 184  EFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCA 243

Query: 553  TFATRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPV 732
            TFATRALGLTSPL TTHQIDNCTEGCV+ ARTKEYCS+FH KIRE            +PV
Sbjct: 244  TFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPV 303

Query: 733  RTGIITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPI 912
              GIITHYMRP N+APRL+S++ I+GWI+CQLEVL+C+EV WP A  E KY ++ CGWP 
Sbjct: 304  PMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDCGWPS 363

Query: 913  KEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYA 1092
            K+ AYEC INLLTGRTHQIRAQLA CGAP+VGDSMYMPA +AE  SPG+NPFGK +K+Y 
Sbjct: 364  KKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYT 423

Query: 1093 NDADKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR*EK 1245
            N+ DK   V  W ALHGKEPA+AIGLQA++ISWD  +H Y AG+PWWR E+
Sbjct: 424  NEEDKETAVAEWSALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWRQEQ 474


>gb|ESW19737.1| hypothetical protein PHAVU_006G151200g [Phaseolus vulgaris]
          Length = 478

 Score =  619 bits (1596), Expect = e-175
 Identities = 280/404 (69%), Positives = 339/404 (83%)
 Frame = +1

Query: 25   TSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINFG 204
            T+T   +S P+YDRLLPCP    PPR+EHLVV EGG V ++I +AL LP LYV DLI FG
Sbjct: 74   TATSSSNSLPKYDRLLPCPLHKTPPRVEHLVVSEGGPVLEHICKALELPPLYVTDLIQFG 133

Query: 205  AVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYVE 384
            AVYYALVCP PPP+AT EQIR+ K+ T P +L  R SIKGKTVREAQKTFR+ + D++VE
Sbjct: 134  AVYYALVCPQPPPSATEEQIRVFKEVTEPSVLRQRASIKGKTVREAQKTFRVTHADQFVE 193

Query: 385  PGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFAT 564
            PGTYLRVHVHPKRFPRCYEIDW+SRI++V ESYVVLDKPAGTSVGGT+DNIEESCATFAT
Sbjct: 194  PGTYLRVHVHPKRFPRCYEIDWRSRIISVAESYVVLDKPAGTSVGGTTDNIEESCATFAT 253

Query: 565  RALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTGI 744
            RALGLT+PL+TTHQIDNCTEGCVVLARTKEYCSVFH KIRE            SP+ TGI
Sbjct: 254  RALGLTAPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALASSPLPTGI 313

Query: 745  ITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEFA 924
            ITHYMRP N+APRLISE++I+GW++CQLE+ +C++VPWP+   ++KY ++ CGWP ++FA
Sbjct: 314  ITHYMRPINMAPRLISEDFIKGWLMCQLEIQECRKVPWPTPSIQDKYCVEDCGWPYQDFA 373

Query: 925  YECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDAD 1104
            YEC INLLTGRTHQIRAQ A+C AP+VGDSMYMPA++ + ++PG+NPFGK+++ ++++++
Sbjct: 374  YECKINLLTGRTHQIRAQFAACRAPLVGDSMYMPAAIGDMSNPGLNPFGKYKRDFSSESE 433

Query: 1105 KTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            K   V NWIA HGKEP +AIGLQA QISWDD  HFY++GSPWWR
Sbjct: 434  KETAVVNWIAQHGKEPGVAIGLQACQISWDDDDHFYESGSPWWR 477


>ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citrus clementina]
            gi|557551677|gb|ESR62306.1| hypothetical protein
            CICLE_v10015055mg [Citrus clementina]
          Length = 487

 Score =  618 bits (1593), Expect = e-174
 Identities = 288/405 (71%), Positives = 338/405 (83%)
 Frame = +1

Query: 22   ATSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINF 201
            A +TP  + YPEY RLLPCP    PPR+EHLVV EGG V +YI R LNLP L+VADLI+F
Sbjct: 74   AAATPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHF 133

Query: 202  GAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYV 381
            GAVYYALVCP PP TAT EQ+R+ K+ T P +L+ R SIKGKTVREAQKTFRI +VD+ V
Sbjct: 134  GAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIV 193

Query: 382  EPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFA 561
            E GTYLRVHVHPKRFPRCY+IDWKSRI+AVTES+VVLDKPAGTSVGGT+DNIEESCATFA
Sbjct: 194  EAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFA 253

Query: 562  TRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTG 741
            +RALGLT+PL TTHQIDNCTEGCVVLART+EYCS+FHRKIRE            +P+  G
Sbjct: 254  SRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVG 313

Query: 742  IITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEF 921
            I+THYMRP N+APRLISE++I+GW LCQLEV++CK+VPWP A   + YSI+ CGWP +++
Sbjct: 314  IMTHYMRPINIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDY 373

Query: 922  AYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDA 1101
            AYEC I LLTGRTHQ+RAQLA+CGAPIVGDSMYMPA++A+ +SPG+NPFGK QK+YA+D 
Sbjct: 374  AYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDD 433

Query: 1102 DKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            DK   V  WI+ HGKEP++AIGLQA  ISWDDG+  Y+A SPWWR
Sbjct: 434  DKEMAVIEWISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWR 478


>ref|XP_002304926.2| pseudouridine synthase family protein [Populus trichocarpa]
            gi|550340110|gb|EEE85437.2| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 470

 Score =  618 bits (1593), Expect = e-174
 Identities = 289/404 (71%), Positives = 333/404 (82%)
 Frame = +1

Query: 25   TSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINFG 204
            T+T  ++ YPEY RLLPCP    PPRIEHLVV E G V DYI +AL+LP L+VADLI+FG
Sbjct: 63   TATSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFG 122

Query: 205  AVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYVE 384
            AV+YALVCP PP TAT EQIR+ ++ TAP +L  R SIKGKTVREAQKTFRI +VD+++E
Sbjct: 123  AVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLE 182

Query: 385  PGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFAT 564
             G YLRVHVHPKRFPRCY+IDWKSRI+ VTES+VVLDKPAGTSVGGT+DNIEESCATFAT
Sbjct: 183  AGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFAT 242

Query: 565  RALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTGI 744
            RALGLT+PL TTHQIDNCTEGCVVLART+E CSVFH KIRE            SPV  G+
Sbjct: 243  RALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGV 302

Query: 745  ITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEFA 924
            + HYMRP N+APRL+SEE+I+GW LCQLEV++CK VPWP AV EEKY +Q CGWP K+ A
Sbjct: 303  VNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHA 362

Query: 925  YECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDAD 1104
            YEC INLLTGRTHQIRAQLA+ GAP+VGDSMYMPA++AE  SPG NPFGK++K+Y ++ D
Sbjct: 363  YECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSEDD 422

Query: 1105 KTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            K   VE W+  HGKEP +AIGLQA QISWDDG+H Y AGSPWWR
Sbjct: 423  KAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466


>gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 491

 Score =  617 bits (1591), Expect = e-174
 Identities = 290/422 (68%), Positives = 344/422 (81%), Gaps = 11/422 (2%)
 Frame = +1

Query: 13   TITATSTPGI-----------HSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRA 159
            T +ATS  G+            SYPEY RLLPCP   GPPR+EHLVV EGG V +YI +A
Sbjct: 70   TASATSVNGVLLYFMIEIHFLFSYPEYHRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKA 129

Query: 160  LNLPHLYVADLINFGAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVRE 339
            L+LP ++VADLI+FGAVYYALVCP PPP+AT EQIR+ K+ TAP +L+ R SI+GKTVRE
Sbjct: 130  LDLPPMFVADLIHFGAVYYALVCPQPPPSATPEQIRIFKEVTAPSVLSKRTSIRGKTVRE 189

Query: 340  AQKTFRIANVDEYVEPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVG 519
            AQKTFRI +VD++VE GTYLRVHVHPKRFPRCYEIDWKSRI+AVT+SYVVLDKPAGTSVG
Sbjct: 190  AQKTFRITHVDQFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVG 249

Query: 520  GTSDNIEESCATFATRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXX 699
            GT+DNIEESCATFA RALG ++PL TTHQIDNCTEGCVVLARTKEYCSVFH KIRE    
Sbjct: 250  GTTDNIEESCATFANRALGFSTPLKTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVK 309

Query: 700  XXXXXXXXSPVRTGIITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEE 879
                    +P+  G+ITHYMRP N+APRL+SE++I+GW LCQLEV++CK+VPWP  V +E
Sbjct: 310  KLYLALTAAPLPIGVITHYMRPINMAPRLVSEDFIKGWYLCQLEVMECKKVPWPDYVIQE 369

Query: 880  KYSIQGCGWPIKEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGI 1059
             Y I+  GWP+K+ AYEC INLLTGRTHQ+RAQLA+CGAPI+GDSMYMP ++AE A+PG+
Sbjct: 370  NYCIEDSGWPLKDHAYECKINLLTGRTHQVRAQLAACGAPILGDSMYMPPTIAEIANPGL 429

Query: 1060 NPFGKHQKKYANDADKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR* 1239
            NPFGK+ KK+ ++ DK   +  WI+  GKEP++AIGLQA QISWDDG+HFYKA SPWWR 
Sbjct: 430  NPFGKY-KKHTSENDKEIAITEWISQFGKEPSVAIGLQACQISWDDGEHFYKARSPWWRS 488

Query: 1240 EK 1245
             K
Sbjct: 489  RK 490


>ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542359|gb|EEF43901.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 395

 Score =  615 bits (1586), Expect = e-173
 Identities = 284/393 (72%), Positives = 331/393 (84%)
 Frame = +1

Query: 58   YDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINFGAVYYALVCPNP 237
            YDRLLPCP    PPR+EHLVV E G V DYI +AL+LP L+VADLI+FGAV+YALVCP P
Sbjct: 3    YDRLLPCPSQNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQP 62

Query: 238  PPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYVEPGTYLRVHVHP 417
            PPTAT EQIRL +++TAP +L  R SIKGKTVREAQKTFR+++V +++E GTYLRV+VHP
Sbjct: 63   PPTATPEQIRLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVYVHP 122

Query: 418  KRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFATRALGLTSPLVT 597
            +RFPRCYEIDWKSRI+AVTESYVVLDKPAGTSVGGT++NIEE+CATFATRALGLT PL T
Sbjct: 123  RRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTNNIEETCATFATRALGLTIPLKT 182

Query: 598  THQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTGIITHYMRPFNLA 777
            THQIDNCTEGCVVLART EYC VFH KIRE             PV  G+ITHYMRP N+ 
Sbjct: 183  THQIDNCTEGCVVLARTNEYCPVFHGKIRENKVKKLYLALAACPVPVGVITHYMRPGNIP 242

Query: 778  PRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEFAYECSINLLTGR 957
            PRL+SEE+IEGW LCQLEVL+C++VPWP  VTEEKYS++ CGWP K+FAYEC INLLTGR
Sbjct: 243  PRLVSEEFIEGWYLCQLEVLECRKVPWPDTVTEEKYSVEDCGWPSKDFAYECKINLLTGR 302

Query: 958  THQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDADKTNNVENWIAL 1137
            THQIRAQLA+CGAP+VGDSMYMPA++AE A+PG+NPFGKH+K+Y  + D++  V  W+  
Sbjct: 303  THQIRAQLAACGAPLVGDSMYMPAAIAEMANPGVNPFGKHKKQYTGENDESMGVAEWVER 362

Query: 1138 HGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            HGKEP+IAIGLQA +ISW D +H YKAG PWWR
Sbjct: 363  HGKEPSIAIGLQACEISWGDSKHIYKAGPPWWR 395


>ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Citrus sinensis] gi|568827302|ref|XP_006468003.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 487

 Score =  614 bits (1584), Expect = e-173
 Identities = 286/409 (69%), Positives = 337/409 (82%)
 Frame = +1

Query: 10   STITATSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVAD 189
            + I A +TP  + YPEY RLLPCP    PPR+EHLVV EGG V +YI R LNLP L+VAD
Sbjct: 70   AAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVAD 129

Query: 190  LINFGAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANV 369
            LI+FGAVYYALVCP PP TAT EQ+R+ K+ T P +L+ R SIKGKTVREAQKTFRI +V
Sbjct: 130  LIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189

Query: 370  DEYVEPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESC 549
            D+ VE GTYLRVHVHPKRFPRCY+IDW SRI+AVTES+VVLDKPAGTSVGGT+DNIEESC
Sbjct: 190  DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249

Query: 550  ATFATRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSP 729
            ATFA+RALGLT+PL TTHQIDNCTEGCVVLART+EYCS+FHRKIRE            +P
Sbjct: 250  ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309

Query: 730  VRTGIITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWP 909
            +  GI+THYMRP N+APRL+SE++I GW LCQLEV++CK+VPWP A   + YSI+ CGWP
Sbjct: 310  LPVGIMTHYMRPINIAPRLVSEDFITGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWP 369

Query: 910  IKEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKY 1089
             +++AYEC I LLTGRTHQ+RAQLA+CGAPIVGDSMYMPA++A+ +SPG+NPFGK QK+Y
Sbjct: 370  SRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEY 429

Query: 1090 ANDADKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            A+D DK   V  WI+ HG EP++AIGLQA  ISWDDG+  Y+A SPWWR
Sbjct: 430  ASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 478


>ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  614 bits (1583), Expect = e-173
 Identities = 277/404 (68%), Positives = 340/404 (84%)
 Frame = +1

Query: 25   TSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINFG 204
            T+T    S+P+YDRLLPCP    PPRIEHLV+ EGG V + I +AL+LP LYV+DLI FG
Sbjct: 74   TATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLPPLYVSDLIQFG 133

Query: 205  AVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYVE 384
            AVYYALVCP PPP AT EQIR+ K+ T P +L  R SIKGKTVREAQKTFR+ +VD++VE
Sbjct: 134  AVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVE 193

Query: 385  PGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFAT 564
            PGTYLRVHVHPKRFPR YEIDW+SRI+AV ESYVVLDKPAGTSVGGT+DNIEESCATFAT
Sbjct: 194  PGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFAT 253

Query: 565  RALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTGI 744
            RALG+T+PL+TTHQIDNCTEGCVVLARTK+YCS+FH KIRE            SP+ TGI
Sbjct: 254  RALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALAASPLPTGI 313

Query: 745  ITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEFA 924
            ITHYMRP N+APRLISE++I+GW LCQLEVL+C+++PWP+   ++KY ++ CGWP +++A
Sbjct: 314  ITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDCGWPSQDYA 373

Query: 925  YECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDAD 1104
            YEC INLLTG+THQIRAQ A+  AP++GDSMYMPA++A+ ++PG+NPFGK++K ++++++
Sbjct: 374  YECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYKKDFSSESE 433

Query: 1105 KTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            K   V NW+A HGKEP++AIGLQA QISWDD +HFY+AG PWWR
Sbjct: 434  KETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWR 477


>ref|XP_004145102.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
            sativus]
          Length = 475

 Score =  610 bits (1574), Expect = e-172
 Identities = 286/411 (69%), Positives = 340/411 (82%), Gaps = 1/411 (0%)
 Frame = +1

Query: 16   ITATSTPGIHS-YPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADL 192
            +T T+T    + YP+Y RLLPC     PPR+EHLVV EGG V +YI+++L+LP +YVADL
Sbjct: 64   VTQTATNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADL 123

Query: 193  INFGAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVD 372
            I+FGAVYYALVCP PPPTA++E+IRL K++T P  L  R SIKGKT+REAQKTFRI ++D
Sbjct: 124  IHFGAVYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHID 183

Query: 373  EYVEPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCA 552
            E+VE GTYLRV+VHPKRFPRCYE+DWKSRI+AVT+SYVVLDKPAGTSVGGT++NIEE+C 
Sbjct: 184  EFVEVGTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCV 243

Query: 553  TFATRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPV 732
            TFATRALGLTSPL TTHQIDNCTEGCV+LARTKEYCS+FHRKIRE             P+
Sbjct: 244  TFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPL 303

Query: 733  RTGIITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPI 912
              GI+THYMRP NLAPRL+S + I+GW LCQLEVL+C+EV WP A  E KYSI+ CGWP 
Sbjct: 304  PKGIMTHYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPS 363

Query: 913  KEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYA 1092
            K+ A+EC INLLTGRTHQIRAQLA CGAP+VGDSMYMPA +AE A+PG+NPFGK +K+Y 
Sbjct: 364  KKKAFECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMANPGLNPFGKCKKEYT 423

Query: 1093 NDADKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR*EK 1245
            ++ DK N V  WIALHGKEPA+AIGLQA++ISWD  +H Y AG+PWWR E+
Sbjct: 424  SEEDKENAVAEWIALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWRQEQ 474


>ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
            sativus]
          Length = 475

 Score =  608 bits (1568), Expect = e-171
 Identities = 284/411 (69%), Positives = 340/411 (82%), Gaps = 1/411 (0%)
 Frame = +1

Query: 16   ITATSTPGIHS-YPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADL 192
            +T T+T    + YP+Y RLLPC     PPR+EHLVV EGG V +YI+++L+LP +YVADL
Sbjct: 64   VTQTATNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADL 123

Query: 193  INFGAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVD 372
            I+FGAVYYALVCP PPPTA++E+IRL K++T P  L  R SIKGKT+REAQKTFRI ++D
Sbjct: 124  IHFGAVYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHID 183

Query: 373  EYVEPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCA 552
            E+VE GTYLRV+VHPKRFPRCYE+DWKSRI+AVT+SYVVLDKPAGTSVGGT++NIEE+C 
Sbjct: 184  EFVEVGTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCV 243

Query: 553  TFATRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPV 732
            TFATRALGLTSPL TTHQIDNCTEGCV+LARTKEYCS+FHRKIRE             P+
Sbjct: 244  TFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPL 303

Query: 733  RTGIITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPI 912
              GI+THYMRP NLAPRL+S + I+GW LCQLEVL+C+EV WP A  E KYSI+ CGWP 
Sbjct: 304  PKGIMTHYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPS 363

Query: 913  KEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYA 1092
            K+ A+EC INLLTGRTHQIR QLA  GAP+VGDS+YMPA++AE A+PG+NPFGK +K+Y 
Sbjct: 364  KKKAFECKINLLTGRTHQIRVQLADYGAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYT 423

Query: 1093 NDADKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR*EK 1245
            ++ DK N V  WIALHGKEPA+AIGLQA++ISWD G+H Y AG+PWWR E+
Sbjct: 424  SEEDKENAVAEWIALHGKEPAVAIGLQAYEISWDSGEHIYNAGTPWWRQEQ 474


>ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 477

 Score =  607 bits (1565), Expect = e-171
 Identities = 279/404 (69%), Positives = 334/404 (82%)
 Frame = +1

Query: 25   TSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINFG 204
            T+   ++ YP Y RLLPCP   GPPR+EHLVV EGG V +YI + L+LP  +VADLI+FG
Sbjct: 73   TAASSVYGYP-YTRLLPCPSQNGPPRVEHLVVSEGGPVLEYICKKLDLPAQFVADLIHFG 131

Query: 205  AVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYVE 384
            AVYYALVCP PPPTAT EQ+R++K+ TAP +L  R SIKGKTVREAQKTFRI + D+YVE
Sbjct: 132  AVYYALVCPKPPPTATPEQMRVYKEVTAPSVLKKRDSIKGKTVREAQKTFRITHADQYVE 191

Query: 385  PGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFAT 564
             GTYLRVHVHPKRFPRCY+IDWKSR++AVTE +VVLDKPAGT+VGGT+DNIEESCATF +
Sbjct: 192  DGTYLRVHVHPKRFPRCYDIDWKSRVIAVTEDFVVLDKPAGTTVGGTTDNIEESCATFTS 251

Query: 565  RALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTGI 744
            RALGL++PL+TTHQIDNCTEGCVVLARTK+YCSVFH KIRE            +PV  G 
Sbjct: 252  RALGLSTPLMTTHQIDNCTEGCVVLARTKDYCSVFHGKIREKKVKKLYLALAAAPVPLGT 311

Query: 745  ITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEFA 924
            ITHYMRP N+APRLISE+ IE W LCQLEV++CK+VPWPS+V EE+Y ++ CGWP K++A
Sbjct: 312  ITHYMRPINVAPRLISEDSIERWSLCQLEVMECKKVPWPSSVIEEEYGVEDCGWPSKDYA 371

Query: 925  YECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDAD 1104
            YEC INLLTG+THQIRAQLA+CG P+VGDSMYMPA++AE  +P +NPFGKH+K YA + D
Sbjct: 372  YECKINLLTGKTHQIRAQLAACGTPLVGDSMYMPAAIAEMENPELNPFGKHKKHYAGEND 431

Query: 1105 KTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            +   V  W+A HGKEP +AIGLQA QISWDDG+H ++A +PWWR
Sbjct: 432  EEIAVTEWMARHGKEPIVAIGLQACQISWDDGEHSFEARAPWWR 475


>ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  607 bits (1564), Expect = e-171
 Identities = 278/403 (68%), Positives = 336/403 (83%)
 Frame = +1

Query: 28   STPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINFGA 207
            +T    S+ +YDRLLPCP    PPRIEHLVV EGG V ++I +AL+LP LYV+DLI FGA
Sbjct: 75   ATSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLYVSDLIQFGA 134

Query: 208  VYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYVEP 387
            VYYALVCP PPP AT EQIR+ K+ T P +L  R SIKGKTVREAQKTFR+ +VD++VEP
Sbjct: 135  VYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEP 194

Query: 388  GTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFATR 567
            GTYLRVHVHPKR PRCYEIDW+SRI+ V ESYVVLDKPAGTSVGGT+DNIEESCATFATR
Sbjct: 195  GTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCATFATR 254

Query: 568  ALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTGII 747
            ALG+T+PL+TTHQIDNCTEGCVVLARTKEYCSVFH KIRE             P+ TGII
Sbjct: 255  ALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLPTGII 314

Query: 748  THYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWPIKEFAY 927
            THYMRP ++APRLISE++I+GW LCQLEVL+C++VPWP+   ++KY I+ CGWP +++AY
Sbjct: 315  THYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQDYAY 374

Query: 928  ECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKYANDADK 1107
            EC INLLTG+THQIRAQ A+  AP++GDSMYMPA++A  ++PG+NPFGK++K ++++++K
Sbjct: 375  ECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYKKDFSSESEK 434

Query: 1108 TNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
               V NWIA HGKEP++AIGLQA QISWDD +HFY+A SPWWR
Sbjct: 435  ETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWR 477


>ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Solanum tuberosum] gi|565362724|ref|XP_006348095.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 483

 Score =  602 bits (1551), Expect = e-169
 Identities = 278/413 (67%), Positives = 338/413 (81%), Gaps = 1/413 (0%)
 Frame = +1

Query: 1    SSLSTITATS-TPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHL 177
            ++LS I++TS T   + +  Y RL+PCP    PPR+EHLVV + G V +YI +AL+LP L
Sbjct: 71   TALSDISSTSHTVSSNGHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVLEYICKALDLPPL 130

Query: 178  YVADLINFGAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFR 357
            YV DLI FGAVYYALVCP PPPTA+ EQI+++++ T P +L  R SIKGKTVREAQKTF+
Sbjct: 131  YVEDLIQFGAVYYALVCPKPPPTASPEQIKVYEEVTDPSILRQRTSIKGKTVREAQKTFK 190

Query: 358  IANVDEYVEPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNI 537
            I   DE VE GTYLRVHVHPKRFPRCY+IDWKSRI+AVT+ YVVLDKPAGTSVGGT+DNI
Sbjct: 191  ITRADEIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSVGGTTDNI 250

Query: 538  EESCATFATRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXX 717
            EESCATFATRALG ++PL+TTHQIDNCTEGCVVLAR+KEYCSVFH KIRE          
Sbjct: 251  EESCATFATRALGFSAPLLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLAL 310

Query: 718  XXSPVRTGIITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQG 897
              +PV  GI+THYMRP N+APRL+SE++++GW+LCQLEVL+CK+VPWPS+  +  Y+++ 
Sbjct: 311  AAAPVPIGILTHYMRPINMAPRLVSEDFVKGWLLCQLEVLECKKVPWPSSEIQRTYNLED 370

Query: 898  CGWPIKEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKH 1077
            CGW +K+FAYEC INLLTGRTHQIRAQLA+C AP+VGDSMYMPA++AE   PG NPFGK+
Sbjct: 371  CGWALKDFAYECQINLLTGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPGSNPFGKN 430

Query: 1078 QKKYANDADKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            +K Y+N+ DK+  ++ WIA HGKEP++A+GLQA QISWDDGQH Y A  PWWR
Sbjct: 431  KKLYSNENDKSLAIDEWIAQHGKEPSVAVGLQACQISWDDGQHCYGARLPWWR 483


>ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Solanum
            lycopersicum]
          Length = 448

 Score =  597 bits (1538), Expect = e-168
 Identities = 275/413 (66%), Positives = 336/413 (81%), Gaps = 1/413 (0%)
 Frame = +1

Query: 1    SSLSTITATS-TPGIHSYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHL 177
            ++LS I +TS T   + +  Y RL+PCP    PPR+EHLVV + G V +YI +AL+LP L
Sbjct: 36   TALSDINSTSHTVSSNGHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVVEYICKALDLPPL 95

Query: 178  YVADLINFGAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFR 357
            YV DLI FGAVYYALVCP PPPTA+ EQI+++++ T P +L  R SIKGKTVREAQKTF+
Sbjct: 96   YVEDLIQFGAVYYALVCPKPPPTASPEQIKVYEEVTDPSVLRKRTSIKGKTVREAQKTFK 155

Query: 358  IANVDEYVEPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNI 537
            I   DE VE GTYLRVHVHPKRFPRCY+IDWKSRI+AVT+ YVVLDKPAGTSVGGT+DNI
Sbjct: 156  ITRADEIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSVGGTTDNI 215

Query: 538  EESCATFATRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXX 717
            EESCATFATRALG ++PL+TTHQIDNCTEGCVVLAR+KEYCSVFH KIRE          
Sbjct: 216  EESCATFATRALGFSAPLLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVRKLYLAL 275

Query: 718  XXSPVRTGIITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQG 897
              +PV  GI+THYMRP N+APRL+S ++++GW+LCQLEVL+C++VPWPS+  +  Y+++ 
Sbjct: 276  AAAPVPIGILTHYMRPINMAPRLVSRDFVKGWLLCQLEVLECQKVPWPSSEIQRTYNLED 335

Query: 898  CGWPIKEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKH 1077
            CGW +K++AYEC INLLTGRTHQIRAQLA+C AP+VGDSMYMPA++AE   PG NPFGK+
Sbjct: 336  CGWALKDYAYECQINLLTGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPGSNPFGKN 395

Query: 1078 QKKYANDADKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
            +K Y+N+ DK+  ++ WIA HGKEP++A+GLQA QISWDDGQH Y A  PWWR
Sbjct: 396  KKLYSNENDKSLAIDEWIAQHGKEPSVAVGLQACQISWDDGQHCYGARMPWWR 448


>ref|XP_004486127.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
            chloroplastic-like [Cicer arietinum]
          Length = 467

 Score =  595 bits (1534), Expect = e-167
 Identities = 276/409 (67%), Positives = 332/409 (81%), Gaps = 12/409 (2%)
 Frame = +1

Query: 46   SYPEYDRLLPCPPTYGPPRIEHLVVEEGGSVSDYITRALNLPHLYVADLINFGAVYYALV 225
            SYP+Y+RLLPCP    PPRIEH+VV EGG V +YI +AL+LP L+VADLI FGAVY+ALV
Sbjct: 58   SYPKYNRLLPCPTHKIPPRIEHIVVSEGGPVLEYICKALDLPPLFVADLIKFGAVYFALV 117

Query: 226  CPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIANVDEYVEPGTYLRV 405
            CP PPPTATAE+IR+ K+ T P +L  R SIKGKT+REAQKTF + +VD++VEPGTYLRV
Sbjct: 118  CPKPPPTATAEEIRVFKKATEPLVLRKRASIKGKTIREAQKTFLVTDVDQFVEPGTYLRV 177

Query: 406  HVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEESCATFATRALGLTS 585
            HVHPKRFPRCYEIDW+SRI+AV ESYV+LDKPAGTSVGGT+ N EESCA FATRAL LT+
Sbjct: 178  HVHPKRFPRCYEIDWRSRIIAVEESYVILDKPAGTSVGGTTGNTEESCANFATRALELTT 237

Query: 586  PLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXSPVRTGIITHYMRP 765
            PL+TTHQIDNCTEGCVVLAR KEYCSVFH KIRE            SP+ TGII HYMRP
Sbjct: 238  PLMTTHQIDNCTEGCVVLARNKEYCSVFHGKIREKKVKKIYLALAASPLPTGIIKHYMRP 297

Query: 766  FNLAPRLISE------------EYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGWP 909
             N+APRLISE             + +GW +CQLEVL+C ++PWP+ V +EKY ++ CGWP
Sbjct: 298  INMAPRLISEGXTTQIGMHSKDYFNKGWHICQLEVLECIKIPWPTTVVQEKYCVEDCGWP 357

Query: 910  IKEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKKY 1089
             +++AYEC INLLTGRTHQIRAQ A+C AP++GDSMYMPA++AE  +PG+NPFGK++K +
Sbjct: 358  SQDYAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMMNPGLNPFGKYKKDF 417

Query: 1090 ANDADKTNNVENWIALHGKEPAIAIGLQAWQISWDDGQHFYKAGSPWWR 1236
             ++++K   V NWIA HGKEP++AIGLQA QISWDDG+H Y+AGSPWWR
Sbjct: 418  TSESEKETAVINWIAQHGKEPSVAIGLQACQISWDDGEHIYEAGSPWWR 466


>ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Capsella rubella]
            gi|482553612|gb|EOA17805.1| hypothetical protein
            CARUB_v10006203mg [Capsella rubella]
          Length = 479

 Score =  584 bits (1505), Expect = e-164
 Identities = 278/413 (67%), Positives = 336/413 (81%), Gaps = 4/413 (0%)
 Frame = +1

Query: 10   STITATSTPGIHSYPEYDRLLPCPPTYGPPRIEHLVV-EEGGSVSDYITRALNLPHLYVA 186
            +T+T++ST G   YPEY+RL+PCP    PPRIEH+VV E+   V+++I+R L+LP LYVA
Sbjct: 70   TTLTSSSTSG---YPEYNRLMPCPAYNNPPRIEHMVVLEDDVLVAEFISRQLDLPPLYVA 126

Query: 187  DLINFGAVYYALVCPNPPPTATAEQIRLHKQYTAPELLANRPSIKGKTVREAQKTFRIAN 366
            DLI FGAV+YALVCP PPPTAT E+I+L ++ T+P +L  R SIKGKTVREAQKTFR+ +
Sbjct: 127  DLIRFGAVHYALVCPKPPPTATPEEIKLFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTH 186

Query: 367  VDEYVEPGTYLRVHVHPKRFPRCYEIDWKSRILAVTESYVVLDKPAGTSVGGTSDNIEES 546
             D+Y E GTYLRVHVHPKR PRCYEIDWKSRI+AVT+SYV+LDKPAGT+VGGT+DNIEES
Sbjct: 187  TDQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIIAVTDSYVILDKPAGTTVGGTTDNIEES 246

Query: 547  CATFATRALGLTSPLVTTHQIDNCTEGCVVLARTKEYCSVFHRKIREXXXXXXXXXXXXS 726
            CATFA+RAL L  PL TTHQIDNCTEGCVV ARTKEYCSVFH KIR+            +
Sbjct: 247  CATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHMKIRDKEVKKLYRALAAA 306

Query: 727  PVRTGIITHYMRPFNLAPRLISEEYIEGWILCQLEVLDCKEVPWPSAVTEEKYSIQGCGW 906
            P+ TGII+HYMRP N+APRL+SE+ I+GW LCQLEVL+CK++PWP+A TE+K+ I+ CGW
Sbjct: 307  PLPTGIISHYMRPKNMAPRLVSEDSIKGWHLCQLEVLECKKIPWPNAGTEKKHDIEDCGW 366

Query: 907  PIKEFAYECSINLLTGRTHQIRAQLASCGAPIVGDSMYMPASLAETASPGINPFGKHQKK 1086
              KEFAYEC+INLLTG+THQIRAQLA+ GAP+VGDSMYMPA++AE  +P INP+GK +K 
Sbjct: 367  TSKEFAYECTINLLTGKTHQIRAQLAAYGAPLVGDSMYMPAAIAEMMNPEINPYGKAKKH 426

Query: 1087 YA-NDADKTNNVENWIALHGKEPAIAIGLQAWQISW--DDGQHFYKAGSPWWR 1236
            Y   + DK   V  WI  HGKEP + IGLQA QISW  DDG+HFY+AG+PWWR
Sbjct: 427  YTMEENDKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 479