BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00017830
         (2644 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ESW17761.1| hypothetical protein PHAVU_007G265900g [Phaseolus...   584   e-164
gb|EOY34545.1| F2P16.20 protein, putative isoform 1 [Theobroma c...   584   e-164
ref|XP_002321396.2| hypothetical protein POPTR_0015s01330g [Popu...   580   e-162
ref|XP_003519102.1| PREDICTED: putative RNA polymerase II subuni...   575   e-161
ref|XP_006575272.1| PREDICTED: putative RNA polymerase II subuni...   567   e-158
gb|EXB67559.1| hypothetical protein L484_006008 [Morus notabilis]     561   e-157
ref|XP_003537129.1| PREDICTED: putative RNA polymerase II subuni...   558   e-156
gb|EOY34547.1| F2P16.20-like protein isoform 3, partial [Theobro...   554   e-155
gb|EOY34549.1| F2P16.20-like protein isoform 5 [Theobroma cacao]      530   e-147
gb|EOY34546.1| F2P16.20-like protein isoform 2 [Theobroma cacao]      527   e-147
gb|EMJ09632.1| hypothetical protein PRUPE_ppa002134mg [Prunus pe...   522   e-145
ref|XP_006480289.1| PREDICTED: putative RNA polymerase II subuni...   505   e-140
gb|EOY34548.1| F2P16.20 protein, putative isoform 4 [Theobroma c...   494   e-137
ref|XP_006394906.1| hypothetical protein EUTSA_v10003721mg [Eutr...   493   e-136
ref|XP_006290171.1| hypothetical protein CARUB_v10003849mg [Caps...   483   e-133
ref|NP_974839.1| uncharacterized protein [Arabidopsis thaliana] ...   481   e-133
gb|AAB61054.1| contains similarity to myosin heavy chain [Arabid...   453   e-124
ref|XP_002874325.1| hypothetical protein ARALYDRAFT_326902 [Arab...   440   e-120
sp|A2Y040.1|RPAP2_ORYSI RecName: Full=Putative RNA polymerase II...   404   e-109
sp|Q6AVZ9.1|RPAP2_ORYSJ RecName: Full=Putative RNA polymerase II...   402   e-109

>gb|ESW17761.1| hypothetical protein PHAVU_007G265900g [Phaseolus vulgaris]
          Length = 706

 Score =  584 bits (1506), Expect = e-164
 Identities = 339/758 (44%), Positives = 445/758 (58%), Gaps = 7/758 (0%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            MAKD+  +VKDAV K+Q+ LLEGI++++ LFAAGSLMS+ DY+D+VTER+I N+CGYPLC
Sbjct: 1    MAKDKAVSVKDAVFKLQMLLLEGIQNEDQLFAAGSLMSRSDYEDIVTERSITNVCGYPLC 60

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
             ++LPSERP KG+YRISLKEHKVYDLQETYM+CS+NC++ S  F+  L AERCS  +  +
Sbjct: 61   CNALPSERPRKGKYRISLKEHKVYDLQETYMFCSSNCVVSSKAFSGILQAERCSALDPEK 120

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +N VL LF  ++++L + E + ++ D+G S LKIQEKT T  GEVPLE W+GPSNAIEGY
Sbjct: 121  LNNVLGLF--ENLNLEQTENVPKDGDLGLSNLKIQEKTVTTSGEVPLEQWVGPSNAIEGY 178

Query: 1955 VPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKN 1776
            VPK          K   KGS+    KSN    +   + +F S I+  D  + SK  P + 
Sbjct: 179  VPKPRERESKGLRKNVKKGSKAGHGKSNNDKDLINSEMNFVSTIIMQDEYSVSKASPGQT 238

Query: 1775 DES--FELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKA 1602
            D +   ++ P    +    K   K     ED         ++      L L+ S++G + 
Sbjct: 239  DTTAHHQIKPTAVDRQQEEKVGLKVVRKDEDSIQDLSSSFES-----GLHLSASEKGKEV 293

Query: 1601 KRSTQ---KKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQKD 1431
             +S +   K   N      D  S  I++  Y V K  S R              K +Q  
Sbjct: 294  SKSCEVVVKSTPNLAIKKKDAHSVSISERHYDVEKNNSAR--------------KSVQLK 339

Query: 1430 AGDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSC 1251
                 + V+  ++++   P   + +   V+K                         G  C
Sbjct: 340  GETSRVTVNGDASTSNFDP-DNVKEKFQVEK------------------------VGGLC 374

Query: 1250 VIAMNPMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDGGDLCEFKXXX 1071
               +   +  +GE                      R VTWADE   G+   DLCE K   
Sbjct: 375  ETKLKSSLKSAGE------------------KKLSRTVTWADEKINGAGNKDLCEVKEFG 416

Query: 1070 XXXXXXXXXXXXXAGEN-DSLRLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLP 894
                            N D LR ASA A AIALSQA+EAVASG SD  DAVSEAGI++LP
Sbjct: 417  DIIKESESVGNEDVANNEDMLRQASAEACAIALSQASEAVASGDSDATDAVSEAGIIILP 476

Query: 893  QPDVNPNEGTGEVA-VVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFA 717
            QP     EGT E A ++++    LK+P+K  IS  D  +SDDSWFD PPEGFSLTLSPFA
Sbjct: 477  QPHDAVEEGTMEDADILQNDSVTLKWPRKPGISDIDFFESDDSWFDAPPEGFSLTLSPFA 536

Query: 716  TMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLA 537
             MWNA+F+WMT  SLAYIYG+D+S HEEYL  NGREYP K+ L DGRSSEIKQT  GCLA
Sbjct: 537  NMWNAIFSWMTSYSLAYIYGRDESFHEEYLSVNGREYPCKVVLSDGRSSEIKQTFAGCLA 596

Query: 536  RALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSIHRI 357
            RA P LVA L+L  P+STLEQG++ LLETMSF++ALP+FR KQWQV+ LLF++ALS+ RI
Sbjct: 597  RAFPALVAGLRLPIPISTLEQGMACLLETMSFVDALPAFRTKQWQVVALLFVDALSVCRI 656

Query: 356  PGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
            P L   +  + + F +VL G+++ +EEY+ LKD+V+PL
Sbjct: 657  PSLISYMTDRRALFHKVLSGSQIGMEEYEILKDLVVPL 694


>gb|EOY34545.1| F2P16.20 protein, putative isoform 1 [Theobroma cacao]
          Length = 739

 Score =  584 bits (1505), Expect = e-164
 Identities = 346/754 (45%), Positives = 457/754 (60%), Gaps = 3/754 (0%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            MAK+Q  +V +AVHK+QL LL+GI+D+  L A+GSL+S+ DY+DVVTER I N CGYPLC
Sbjct: 55   MAKEQSISVSEAVHKIQLHLLDGIRDEKQLLASGSLISRSDYEDVVTERTISNTCGYPLC 114

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
             + LPSE   KGRYRISLKEHKVYDLQETYM+CSTNC+I+S  FA SL  ERCS  N ++
Sbjct: 115  ANPLPSEPRRKGRYRISLKEHKVYDLQETYMFCSTNCLINSRAFAGSLQEERCSVLNHAK 174

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +N++LSLF    +D   +  +G+N D+GFS L+I+E  E K  +V L    GPSNAIEGY
Sbjct: 175  LNDILSLFGDLDLD---DNDLGKNGDLGFSNLRIKENEEVKAEDVSLA---GPSNAIEGY 228

Query: 1955 VPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKN 1776
            VP+R+   KP+  K                     K++ F+S         +S  L  K 
Sbjct: 229  VPQRELISKPTPPKN-------------------NKNKVFDS---------SSSKLGSKK 260

Query: 1775 DESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAKR 1596
            +E F          + ++ +   T++  D+Y  S KP               KQG + K 
Sbjct: 261  EEYF----------VNNELDFAGTIIMNDEYIISKKP------------GSFKQGDRTKL 298

Query: 1595 STQKKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQKDAGDKS 1416
            S++K++   N   MDFTS II  DEY++SK PSG   S        +  K I KD+ DK 
Sbjct: 299  SSKKEDFVIN--EMDFTSEIIMNDEYTISKMPSGSKQSCFDSNLKEVEEKGICKDSEDKC 356

Query: 1415 LAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSCVIAMN 1236
            +    SS   +                   DS I    ST N+ QS  G + SS      
Sbjct: 357  VISGSSSALRE------------------KDSSIVELPSTKNVYQS--GLDTSSAEAEKE 396

Query: 1235 PMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDG-GDLCEFKXXXXXXX 1059
                H+ +A+  S+TV +            R VTWAD+ K  + G G+LCE K       
Sbjct: 397  T---HADKAVTSSETVLKSSLKSAGAKKLNRFVTWADKKKADNAGNGNLCEVKEMETMKG 453

Query: 1058 XXXXXXXXXAGENDS-LRLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLPQP-D 885
                      G +D+ LR  SA A A+ALS+AAEAVASG SDV DAV E G+++LP   +
Sbjct: 454  DSEISGSAEDGGDDNMLRFVSAEACAMALSKAAEAVASGDSDVTDAVYENGLIILPSLCE 513

Query: 884  VNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFATMWN 705
            V+  E   +  ++E + AP+K+PKK  I  +D+ + +DSWFD PPEGFSLTLS FATMWN
Sbjct: 514  VDKEEPMEDGDMLEPETAPVKWPKKPGIPHSDMFNPEDSWFDAPPEGFSLTLSTFATMWN 573

Query: 704  ALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLARALP 525
            ALF W+T SSLAYIYG+D+S HEEYL  NGREYPRKI L DGRSSEIK+T+  C++RALP
Sbjct: 574  ALFEWITSSSLAYIYGRDESFHEEYLSINGREYPRKIALRDGRSSEIKETLASCISRALP 633

Query: 524  GLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSIHRIPGLA 345
             +V DL+L  P+STLEQG+  L++T+SFMEALP+FRMKQWQVIVLLF++ALS+ RIP L 
Sbjct: 634  AIVTDLRLPIPISTLEQGMGHLIDTISFMEALPAFRMKQWQVIVLLFIDALSVCRIPALT 693

Query: 344  PRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
            P +        +VLDGA++S+EEY+ +KD+++PL
Sbjct: 694  PHMTNGRMLLHKVLDGAQISMEEYEVMKDLIIPL 727


>ref|XP_002321396.2| hypothetical protein POPTR_0015s01330g [Populus trichocarpa]
            gi|550321730|gb|EEF05523.2| hypothetical protein
            POPTR_0015s01330g [Populus trichocarpa]
          Length = 696

 Score =  580 bits (1495), Expect = e-162
 Identities = 344/757 (45%), Positives = 454/757 (59%), Gaps = 6/757 (0%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            MAKDQ T VKD ++K+QL+LL+GI++++ L AAGS+MS  DY+DVVTER I N+CGYPLC
Sbjct: 1    MAKDQSTVVKDTIYKLQLSLLDGIQNEDQLLAAGSIMSHSDYEDVVTERTIANLCGYPLC 60

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
            G+SLPS+RP KGRYRISLKEHKVYDL ETYMYCS++C+I+S TF+ SL  ERC   N ++
Sbjct: 61   GNSLPSDRPQKGRYRISLKEHKVYDLHETYMYCSSSCVINSRTFSGSLQEERCLVLNPAK 120

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +NEVL LF + S  L  E ++G+N D+GFS LKI+EKTE   GEV  E WIGPSNAIEGY
Sbjct: 121  LNEVLMLFDNFS--LGSEGSLGKNGDLGFSNLKIEEKTEKVEGEVSFEQWIGPSNAIEGY 178

Query: 1955 VPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKN 1776
            VP+RD                       + +     D DF S I+T D  + SKT     
Sbjct: 179  VPQRD----------------------RLEEDFIIDDMDFTSSIITQDEYSISKT----- 211

Query: 1775 DESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAKR 1596
                   P   T +   KK  K       K  GS               +K  +G KAK 
Sbjct: 212  -------PSGLTDTNTDKKTQK------PKAKGS---------------HKGSKGSKAKG 243

Query: 1595 STQKKETNTNFFNMDFTST-IITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQKDAGDK 1419
            + Q  +  +   +M+FTST IITQDEYS+SK PS            GL G   +     +
Sbjct: 244  TKQSSKQESFINDMNFTSTIIITQDEYSISKSPS------------GLAGTTSKTKIQKQ 291

Query: 1418 SLAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAK--STVNLDQSHEGPEGSSCVI 1245
               V + S+  Q    +K+  S T +K     SK+ I    S+ +L    +  + SS  I
Sbjct: 292  KEKVSQKSSENQSSATRKVGSSKTSRKVKEDRSKVAIKDELSSQDLSSPFDSCQTSSITI 351

Query: 1244 AMNPMILH-SGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDGGDLCEFKXXXX 1068
                     S +A KP ++  +            R VTWADE    S   DLCE +    
Sbjct: 352  TAEAKEKSVSEKAAKPVESSLKPSLKTSGAKQLTRSVTWADEKVGSSGSRDLCEVRGMED 411

Query: 1067 XXXXXXXXXXXXAGENDSL-RLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLPQ 891
                          ++  + +  SA A A ALSQAAEAVASG +D ++A+SEAG+++LPQ
Sbjct: 412  TKAGPEIVDNIDKRDDGYVSKFESAEACAKALSQAAEAVASGDADASNALSEAGLVILPQ 471

Query: 890  P-DVNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFAT 714
            P D++  +   +V V++ + + +K+P K  I  ++  D ++SW+D PPEGFSL LS FAT
Sbjct: 472  PHDLDQGDPMEDVDVLDEESSTIKWPGKPGIPQSECFDPENSWYDAPPEGFSLELSSFAT 531

Query: 713  MWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLAR 534
            +W ALF W+T SSLAY+YGKD+S HEEYL  NGREYPRKI L DGRS EI+QT++GCL R
Sbjct: 532  IWMALFAWVTSSSLAYVYGKDESSHEEYLMVNGREYPRKIVLGDGRSFEIQQTIEGCLGR 591

Query: 533  ALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSIHRIP 354
            A P +VADL+L  P+STLEQG + LL TMSF++A+P+FRMKQWQVI LLF+EALS+ RIP
Sbjct: 592  AFPVVVADLRLPIPISTLEQGAANLLGTMSFVDAVPAFRMKQWQVIALLFIEALSVCRIP 651

Query: 353  GLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
                 LI+   N   V+DG +MS EEY+ +KD+++PL
Sbjct: 652  A----LISYMDNRRMVVDGVRMSAEEYEVMKDLMIPL 684


>ref|XP_003519102.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X1 [Glycine max]
          Length = 706

 Score =  575 bits (1482), Expect = e-161
 Identities = 345/761 (45%), Positives = 451/761 (59%), Gaps = 10/761 (1%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            MAKD+  +VKDAV K+Q++LLEGI++++ LFAAGSLMS+ DY+D+VTER+I NMCGYPLC
Sbjct: 1    MAKDKPVSVKDAVFKLQMSLLEGIQNEDQLFAAGSLMSRSDYEDIVTERSITNMCGYPLC 60

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
             ++LPS+RP KGRYRISLKEHKVYDLQETYM+CS+NC++ S TFA SL AERCS  +  +
Sbjct: 61   SNALPSDRPRKGRYRISLKEHKVYDLQETYMFCSSNCLVSSKTFAGSLQAERCSGLDLEK 120

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +N VLSLF++ +++ V  E + +N D+G S LKIQEKTE   GEV LE W GPSNAIEGY
Sbjct: 121  LNNVLSLFENLNLEPV--ETLQKNGDLGLSDLKIQEKTERSSGEVSLEQWAGPSNAIEGY 178

Query: 1955 VPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKN 1776
            VPK          K   KGS+    KS     +   +  F S I+  D  + SK  P + 
Sbjct: 179  VPKPRNRDSKGLRKNVKKGSKTGHGKSISDINLINSEMGFVSTIIMQDEYSVSKVPPGQM 238

Query: 1775 D--ESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESC--GNLQLNKSKQGH 1608
            D   + ++ P  T K    +K +   V  +D        +Q+  S    +L L+ S++  
Sbjct: 239  DATANHQIKPTATVKQ--PEKVDAEVVRKDD------DSIQDLSSSFKSSLILSTSEKEE 290

Query: 1607 KAKRSTQ---KKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQ 1437
            +  +S +   K          D  S  I++ +  V +  S R    V             
Sbjct: 291  EVTKSCEAVLKFSPGCAIQKKDVHSISISERQCDVEQNDSARKSVQV------------- 337

Query: 1436 KDAGDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGS 1257
            K    + +A D +STS         +D   V++      K  + K+  +L          
Sbjct: 338  KGKTSRVIANDDASTSN--------LDPANVEE------KFQVEKAGGSL---------- 373

Query: 1256 SCVIAMNPMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDGGDLCEFKX 1077
                                KT  R            R VTWADE    +   DLCEFK 
Sbjct: 374  --------------------KTKPRSSLKSAGEKKFSRTVTWADEKINSTGSKDLCEFKE 413

Query: 1076 XXXXXXXXXXXXXXXAGENDS--LRLASANAVAIALSQAAEAVASGQSDVADAVSEAGIL 903
                              ND   LR ASA A AIALS A+EAVASG SDV+DAVSEAGI 
Sbjct: 414  FGDIKKESDSVGNNIDVANDEDILRRASAEACAIALSSASEAVASGDSDVSDAVSEAGIT 473

Query: 902  VLPQPDVNPNEGTGEVA-VVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLS 726
            +LP P     EGT E A ++++    LK+P+K+ IS  D  +SDDSWFD PPEGFSLTLS
Sbjct: 474  ILPPPHDAAEEGTVEDADILQNDSVTLKWPRKTGISEADFFESDDSWFDAPPEGFSLTLS 533

Query: 725  PFATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDG 546
            PFATMWN LF+W T SSLAYIYG+D+S HEEYL  NGREYP K+ L DGRSSEIKQT+  
Sbjct: 534  PFATMWNTLFSWTTSSSLAYIYGRDESFHEEYLSVNGREYPCKVVLADGRSSEIKQTLAS 593

Query: 545  CLARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSI 366
            CLARALP LVA L+L  PVS +EQG++ LLETMSF++ALP+FR KQWQV+ LLF++ALS+
Sbjct: 594  CLARALPALVAVLRLPIPVSIMEQGMACLLETMSFVDALPAFRTKQWQVVALLFIDALSV 653

Query: 365  HRIPGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
             R+P L   +  + ++F +VL G+++ +EEY+ LKD+V+PL
Sbjct: 654  CRLPALISYMTDRRASFHRVLSGSQIRMEEYEVLKDLVVPL 694


>ref|XP_006575272.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog isoform X2 [Glycine max]
          Length = 716

 Score =  567 bits (1461), Expect = e-158
 Identities = 345/771 (44%), Positives = 451/771 (58%), Gaps = 20/771 (2%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            MAKD+  +VKDAV K+Q++LLEGI++++ LFAAGSLMS+ DY+D+VTER+I NMCGYPLC
Sbjct: 1    MAKDKPVSVKDAVFKLQMSLLEGIQNEDQLFAAGSLMSRSDYEDIVTERSITNMCGYPLC 60

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
             ++LPS+RP KGRYRISLKEHKVYDLQETYM+CS+NC++ S TFA SL AERCS  +  +
Sbjct: 61   SNALPSDRPRKGRYRISLKEHKVYDLQETYMFCSSNCLVSSKTFAGSLQAERCSGLDLEK 120

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +N VLSLF++ +++ V  E + +N D+G S LKIQEKTE   GEV LE W GPSNAIEGY
Sbjct: 121  LNNVLSLFENLNLEPV--ETLQKNGDLGLSDLKIQEKTERSSGEVSLEQWAGPSNAIEGY 178

Query: 1955 VPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKN 1776
            VPK          K   KGS+    KS     +   +  F S I+  D  + SK  P + 
Sbjct: 179  VPKPRNRDSKGLRKNVKKGSKTGHGKSISDINLINSEMGFVSTIIMQDEYSVSKVPPGQM 238

Query: 1775 D--ESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESC--GNLQLNKSKQGH 1608
            D   + ++ P  T K    +K +   V  +D        +Q+  S    +L L+ S++  
Sbjct: 239  DATANHQIKPTATVKQ--PEKVDAEVVRKDD------DSIQDLSSSFKSSLILSTSEKEE 290

Query: 1607 KAKRSTQ---KKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQ 1437
            +  +S +   K          D  S  I++ +  V +  S R    V             
Sbjct: 291  EVTKSCEAVLKFSPGCAIQKKDVHSISISERQCDVEQNDSARKSVQV------------- 337

Query: 1436 KDAGDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGS 1257
            K    + +A D +STS         +D   V++      K  + K+  +L          
Sbjct: 338  KGKTSRVIANDDASTSN--------LDPANVEE------KFQVEKAGGSL---------- 373

Query: 1256 SCVIAMNPMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDGGDLCEFKX 1077
                                KT  R            R VTWADE    +   DLCEFK 
Sbjct: 374  --------------------KTKPRSSLKSAGEKKFSRTVTWADEKINSTGSKDLCEFKE 413

Query: 1076 XXXXXXXXXXXXXXXAGENDS--LRLASANAVAIALSQAAEAVASGQSDVAD-------- 927
                              ND   LR ASA A AIALS A+EAVASG SDV+D        
Sbjct: 414  FGDIKKESDSVGNNIDVANDEDILRRASAEACAIALSSASEAVASGDSDVSDAVFSPMNE 473

Query: 926  --AVSEAGILVLPQPDVNPNEGTGEVA-VVESKQAPLKFPKKSDISSTDVLDSDDSWFDL 756
              AVSEAGI +LP P     EGT E A ++++    LK+P+K+ IS  D  +SDDSWFD 
Sbjct: 474  TCAVSEAGITILPPPHDAAEEGTVEDADILQNDSVTLKWPRKTGISEADFFESDDSWFDA 533

Query: 755  PPEGFSLTLSPFATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGR 576
            PPEGFSLTLSPFATMWN LF+W T SSLAYIYG+D+S HEEYL  NGREYP K+ L DGR
Sbjct: 534  PPEGFSLTLSPFATMWNTLFSWTTSSSLAYIYGRDESFHEEYLSVNGREYPCKVVLADGR 593

Query: 575  SSEIKQTMDGCLARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVI 396
            SSEIKQT+  CLARALP LVA L+L  PVS +EQG++ LLETMSF++ALP+FR KQWQV+
Sbjct: 594  SSEIKQTLASCLARALPALVAVLRLPIPVSIMEQGMACLLETMSFVDALPAFRTKQWQVV 653

Query: 395  VLLFLEALSIHRIPGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
             LLF++ALS+ R+P L   +  + ++F +VL G+++ +EEY+ LKD+V+PL
Sbjct: 654  ALLFIDALSVCRLPALISYMTDRRASFHRVLSGSQIRMEEYEVLKDLVVPL 704


>gb|EXB67559.1| hypothetical protein L484_006008 [Morus notabilis]
          Length = 695

 Score =  561 bits (1446), Expect = e-157
 Identities = 334/759 (44%), Positives = 446/759 (58%), Gaps = 8/759 (1%)
 Frame = -3

Query: 2495 MAKDQVT--TVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYP 2322
            MAK+Q    +VKD V+++QL+LL+G+  ++ LFAAGS+MS+ DY DVVTER+I N+CGYP
Sbjct: 1    MAKNQPPPISVKDTVYRLQLSLLQGLHGEDQLFAAGSIMSRSDYNDVVTERSIANLCGYP 60

Query: 2321 LCGSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNT 2142
            LC + LPS+RP KGRYRISLKEHKVYDL ETYMYCS++C+I+S TFAASL  ERC+  ++
Sbjct: 61   LCPNPLPSDRPRKGRYRISLKEHKVYDLHETYMYCSSDCVINSRTFAASLKDERCAVLDS 120

Query: 2141 SRINEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIE 1962
            +RI+ VL +F+  S  L  E   G+++D+GFSKLKI+EKTE   G+V LE W GPSNAIE
Sbjct: 121  ARIDAVLRMFEDYS-GLERELGFGKDRDLGFSKLKIEEKTENCVGDVSLEQWAGPSNAIE 179

Query: 1961 GYVPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPV 1782
            GYV +R+   K   SK+  +GS+ N+        V   D DF S I+T D    SKT   
Sbjct: 180  GYVLQRERKPKELGSKSPKRGSKANNT-------VLINDMDFVSTIITEDEYTVSKTPSS 232

Query: 1781 KNDESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKA 1602
                  +    E  + L  K       + E  Y     P  N    G             
Sbjct: 233  LKKTGLDSKVREQEEILAKKAMGNEFAVLETSYA----PASNVSRVG------------- 275

Query: 1601 KRSTQKKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQKDAGD 1422
                                 ++ +D  S  +  S  S           + +  ++   D
Sbjct: 276  ---------------------LVFEDVTSSLRAGSCLS-----------SARAEEESHDD 303

Query: 1421 KSLAVDKSSTSTQIHP-KKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSCVI 1245
            K+    ++S  + + P +KK +  T       +DS  G  +    + +  +  E  S V 
Sbjct: 304  KAEKCTEASIKSSLKPSRKKKLSRTVTWADEKTDSSGG--RKLCEIREIEDMKEDPSVVE 361

Query: 1244 AMNPMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDGGDLCEFKXXXXX 1065
              N +   S   +K                 +G+ V WADE    S   D+CE +     
Sbjct: 362  NKNGVSFTSSGKMK-----------------AGQSVIWADEKGDSSKSIDVCEVREIEDA 404

Query: 1064 XXXXXXXXXXXAGEN-DSLRLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLPQP 888
                        GEN D+ R ASA A A AL +A+EAVAS + +V DA+SEAGI++LP+P
Sbjct: 405  KEAADMLCNADTGENDDTFRFASAEACARALDEASEAVASEELEVNDAMSEAGIIILPRP 464

Query: 887  ----DVNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPF 720
                +  P E   +    E +QAP+K+PKK     +D+ D +DSWFD PPE FSLTLSPF
Sbjct: 465  ENGDEGEPMEEDDDDETSEPEQAPIKWPKKPGSQHSDLFDPEDSWFDAPPEDFSLTLSPF 524

Query: 719  ATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCL 540
            A MWNALFTW T S+LAYIYG+D+SLHEEY   NGREYP KI   DGRSSEIKQT+ G L
Sbjct: 525  AKMWNALFTWTTSSTLAYIYGRDESLHEEYAVVNGREYPEKIVFGDGRSSEIKQTLAGSL 584

Query: 539  ARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSIHR 360
            ARALPGLVADL+L+TP+S+LEQG+ RLL+TMSF++ALP FRMKQWQVI+LLFLEALS++R
Sbjct: 585  ARALPGLVADLRLSTPISSLEQGMGRLLDTMSFVDALPPFRMKQWQVIILLFLEALSVYR 644

Query: 359  IPGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
            +P L P ++ +   F +VLD A++S EEY+ +KD+V+PL
Sbjct: 645  LPALTPHMMYRRVLFHKVLDSAQISAEEYEVMKDLVIPL 683


>ref|XP_003537129.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Glycine max]
          Length = 706

 Score =  558 bits (1438), Expect = e-156
 Identities = 338/758 (44%), Positives = 457/758 (60%), Gaps = 7/758 (0%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            M KD+  +VKDAV K+Q++LLEGI++++ LFAAGSLMS+ DY+D+VTER+I N+CGYPLC
Sbjct: 1    MEKDKPVSVKDAVFKLQMSLLEGIQNEDQLFAAGSLMSRSDYEDIVTERSITNVCGYPLC 60

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
             ++LPS+RP KGRYRISLKEHKVYDL ETYM+C +NC++ S  FA SL AERCS  +  +
Sbjct: 61   SNALPSDRPRKGRYRISLKEHKVYDLHETYMFCCSNCVVSSKAFAGSLQAERCSGLDLEK 120

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +N +LSLF  ++++L   E + +N+D G S LKIQEKTET  GEV LE W GPSNAIEGY
Sbjct: 121  LNNILSLF--ENLNLEPAENLQKNEDFGLSDLKIQEKTETSSGEVSLEQWAGPSNAIEGY 178

Query: 1955 VPK-RDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVK 1779
            VPK RD++ K    K   KGS+    K      + + +  F S I+  D  + SK LP +
Sbjct: 179  VPKPRDHDSK-GLRKNVKKGSKAGHGKPISDINLISSEMGFVSTIIMQDGYSVSKVLPGQ 237

Query: 1778 NDESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAK 1599
             D +     ++   + + K+  K       K  GS + L +     +L L  S++  +  
Sbjct: 238  RDATAH---HQIKPTAIVKQLGKVDAKVVRKDDGSIQDLSSSFK-SSLILGTSEKEEELA 293

Query: 1598 RSTQ---KKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQKDA 1428
            +S +   K   +      D  S  I++ +  V +  S +    V        GK+     
Sbjct: 294  QSCEAALKSSPDCAIKKKDVYSVSISERQCDVEQNDSAKKSVQV-------KGKM----- 341

Query: 1427 GDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSCV 1248
              +  A D +STS         +D   V++      K  + K+  +L+     P+ S   
Sbjct: 342  -SRVTANDDASTSN--------LDPANVEE------KFQVEKAGGSLNTK---PKSS--- 380

Query: 1247 IAMNPMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDGGDLCEFK--XX 1074
                   L S    K S+T                 VTWAD+    +   DLC FK    
Sbjct: 381  -------LKSAGEKKLSRT-----------------VTWADKKINSTGSKDLCGFKNFGD 416

Query: 1073 XXXXXXXXXXXXXXAGENDSLRLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLP 894
                          A + D+LR ASA A  IALS A+EAVASG SDV+DAVSEAGI++LP
Sbjct: 417  IRNESDSAGNSIDVANDEDTLRRASAEACVIALSSASEAVASGDSDVSDAVSEAGIIILP 476

Query: 893  QPDVNPNEGTGE-VAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFA 717
             P     EGT E V ++++    +K+P+K  IS  D  +SDDSWFD  PEGFSLTLSPFA
Sbjct: 477  PPHDAGEEGTLEDVDILQNDSVTVKWPRKPGISEADFFESDDSWFDAAPEGFSLTLSPFA 536

Query: 716  TMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLA 537
            TMWN LF+W+T SSLAYIYG+D+S  EEYL  NGREYP K+ L DGRSSEIKQT+  CLA
Sbjct: 537  TMWNTLFSWITSSSLAYIYGRDESFQEEYLSVNGREYPCKVVLADGRSSEIKQTLASCLA 596

Query: 536  RALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSIHRI 357
            RALP LVA L+L  PVST+EQG++ LLETMSF++ALP+FR KQWQV+ LLF++ALS+ R+
Sbjct: 597  RALPTLVAVLRLPIPVSTMEQGMACLLETMSFVDALPAFRTKQWQVVALLFIDALSVCRL 656

Query: 356  PGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
            P L   +  + ++F +VL G+++ +EEY+ LKD+ +PL
Sbjct: 657  PALISYMTDRRASFHRVLSGSQIGMEEYEVLKDLAVPL 694


>gb|EOY34547.1| F2P16.20-like protein isoform 3, partial [Theobroma cacao]
          Length = 703

 Score =  554 bits (1427), Expect = e-155
 Identities = 336/740 (45%), Positives = 438/740 (59%), Gaps = 2/740 (0%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            MAK+Q  +V +AVHK+QL LL+GI+D+  L A+GSL+S+ DY+DVVTER I N CGYPLC
Sbjct: 55   MAKEQSISVSEAVHKIQLHLLDGIRDEKQLLASGSLISRSDYEDVVTERTISNTCGYPLC 114

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
             + LPSE   KGRYRISLKEHKVYDLQETYM+CSTNC+I+S  FA SL  ERCS  N ++
Sbjct: 115  ANPLPSEPRRKGRYRISLKEHKVYDLQETYMFCSTNCLINSRAFAGSLQEERCSVLNHAK 174

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +N++LSLF    +D   +  +G+N D+GFS L+I+E  E K  +V L    GPSNAIEGY
Sbjct: 175  LNDILSLFGDLDLD---DNDLGKNGDLGFSNLRIKENEEVKAEDVSLA---GPSNAIEGY 228

Query: 1955 VPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKN 1776
            VP+R+   KP+  K                     K++ F+S         +S  L  K 
Sbjct: 229  VPQRELISKPTPPKN-------------------NKNKVFDS---------SSSKLGSKK 260

Query: 1775 DESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAKR 1596
            +E F          + ++ +   T++  D+Y  S KP               KQG + K 
Sbjct: 261  EEYF----------VNNELDFAGTIIMNDEYIISKKP------------GSFKQGDRTKL 298

Query: 1595 STQKKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQKDAGDKS 1416
            S++K++   N   MDFTS II  DEY++SK PSG   S        +  K I KD+ DK 
Sbjct: 299  SSKKEDFVIN--EMDFTSEIIMNDEYTISKMPSGSKQSCFDSNLKEVEEKGICKDSEDKC 356

Query: 1415 LAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSCVIAMN 1236
            +    SS   +                   DS I    ST N+ QS  G + SS      
Sbjct: 357  VISGSSSALRE------------------KDSSIVELPSTKNVYQS--GLDTSSAEAEKE 396

Query: 1235 PMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDG-GDLCEFKXXXXXXX 1059
                H+ +A+  S+TV +            R VTWAD+ K  + G G+LCE K       
Sbjct: 397  T---HADKAVTSSETVLKSSLKSAGAKKLNRFVTWADKKKADNAGNGNLCEVKEMETMKG 453

Query: 1058 XXXXXXXXXAGENDS-LRLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLPQPDV 882
                      G +D+ LR  SA A A+ALS+AAEAVASG SDV DAV E          V
Sbjct: 454  DSEISGSAEDGGDDNMLRFVSAEACAMALSKAAEAVASGDSDVTDAVCE----------V 503

Query: 881  NPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFATMWNA 702
            +  E   +  ++E + AP+K+PKK  I  +D+ + +DSWFD PPEGFSLTLS FATMWNA
Sbjct: 504  DKEEPMEDGDMLEPETAPVKWPKKPGIPHSDMFNPEDSWFDAPPEGFSLTLSTFATMWNA 563

Query: 701  LFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLARALPG 522
            LF W+T SSLAYIYG+D+S HEEYL  NGREYPRKI L DGRSSEIK+T+  C++RALP 
Sbjct: 564  LFEWITSSSLAYIYGRDESFHEEYLSINGREYPRKIALRDGRSSEIKETLASCISRALPA 623

Query: 521  LVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSIHRIPGLAP 342
            +V DL+L  P+STLEQG+  L++T+SFMEALP+FRMKQWQVIVLLF++ALS+ RIP L P
Sbjct: 624  IVTDLRLPIPISTLEQGMGHLIDTISFMEALPAFRMKQWQVIVLLFIDALSVCRIPALTP 683

Query: 341  RLITKSSNFTQVLDGAKMSI 282
             +        +VLDGA++S+
Sbjct: 684  HMTNGRMLLHKVLDGAQISM 703


>gb|EOY34549.1| F2P16.20-like protein isoform 5 [Theobroma cacao]
          Length = 708

 Score =  530 bits (1364), Expect = e-147
 Identities = 324/727 (44%), Positives = 426/727 (58%), Gaps = 3/727 (0%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            MAK+Q  +V +AVHK+QL LL+GI+D+  L A+GSL+S+ DY+DVVTER I N CGYPLC
Sbjct: 55   MAKEQSISVSEAVHKIQLHLLDGIRDEKQLLASGSLISRSDYEDVVTERTISNTCGYPLC 114

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
             + LPSE   KGRYRISLKEHKVYDLQETYM+CSTNC+I+S  FA SL  ERCS  N ++
Sbjct: 115  ANPLPSEPRRKGRYRISLKEHKVYDLQETYMFCSTNCLINSRAFAGSLQEERCSVLNHAK 174

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +N++LSLF    +D   +  +G+N D+GFS L+I+E  E K  +V L    GPSNAIEGY
Sbjct: 175  LNDILSLFGDLDLD---DNDLGKNGDLGFSNLRIKENEEVKAEDVSLA---GPSNAIEGY 228

Query: 1955 VPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKN 1776
            VP+R+   KP+  K                     K++ F+S         +S  L  K 
Sbjct: 229  VPQRELISKPTPPKN-------------------NKNKVFDS---------SSSKLGSKK 260

Query: 1775 DESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAKR 1596
            +E F          + ++ +   T++  D+Y  S KP               KQG + K 
Sbjct: 261  EEYF----------VNNELDFAGTIIMNDEYIISKKP------------GSFKQGDRTKL 298

Query: 1595 STQKKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQKDAGDKS 1416
            S++K++   N   MDFTS II  DEY++SK PSG   S        +  K I KD+ DK 
Sbjct: 299  SSKKEDFVIN--EMDFTSEIIMNDEYTISKMPSGSKQSCFDSNLKEVEEKGICKDSEDKC 356

Query: 1415 LAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSCVIAMN 1236
            +    SS   +                   DS I    ST N+ QS  G + SS      
Sbjct: 357  VISGSSSALRE------------------KDSSIVELPSTKNVYQS--GLDTSSAEAEKE 396

Query: 1235 PMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDG-GDLCEFKXXXXXXX 1059
                H+ +A+  S+TV +            R VTWAD+ K  + G G+LCE K       
Sbjct: 397  T---HADKAVTSSETVLKSSLKSAGAKKLNRFVTWADKKKADNAGNGNLCEVKEMETMKG 453

Query: 1058 XXXXXXXXXAGENDS-LRLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLPQP-D 885
                      G +D+ LR  SA A A+ALS+AAEAVASG SDV DAV E G+++LP   +
Sbjct: 454  DSEISGSAEDGGDDNMLRFVSAEACAMALSKAAEAVASGDSDVTDAVYENGLIILPSLCE 513

Query: 884  VNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFATMWN 705
            V+  E   +  ++E + AP+K+PKK  I  +D+ + +DSWFD PPEGFSLTLS FATMWN
Sbjct: 514  VDKEEPMEDGDMLEPETAPVKWPKKPGIPHSDMFNPEDSWFDAPPEGFSLTLSTFATMWN 573

Query: 704  ALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLARALP 525
            ALF W+T SSLAYIYG+D+S HEEYL  NGREYPRKI L DGRSSEIK+T+  C++RALP
Sbjct: 574  ALFEWITSSSLAYIYGRDESFHEEYLSINGREYPRKIALRDGRSSEIKETLASCISRALP 633

Query: 524  GLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSIHRIPGLA 345
             +V DL+L  P+STLEQG+  L++T+SFMEALP+FRMKQW+           I++ PG  
Sbjct: 634  AIVTDLRLPIPISTLEQGMGHLIDTISFMEALPAFRMKQWE-----------INQNPGRG 682

Query: 344  PRLITKS 324
             R +T S
Sbjct: 683  RRCLTAS 689


>gb|EOY34546.1| F2P16.20-like protein isoform 2 [Theobroma cacao]
          Length = 679

 Score =  527 bits (1358), Expect = e-147
 Identities = 318/700 (45%), Positives = 416/700 (59%), Gaps = 3/700 (0%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            MAK+Q  +V +AVHK+QL LL+GI+D+  L A+GSL+S+ DY+DVVTER I N CGYPLC
Sbjct: 55   MAKEQSISVSEAVHKIQLHLLDGIRDEKQLLASGSLISRSDYEDVVTERTISNTCGYPLC 114

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
             + LPSE   KGRYRISLKEHKVYDLQETYM+CSTNC+I+S  FA SL  ERCS  N ++
Sbjct: 115  ANPLPSEPRRKGRYRISLKEHKVYDLQETYMFCSTNCLINSRAFAGSLQEERCSVLNHAK 174

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +N++LSLF    +D   +  +G+N D+GFS L+I+E  E K  +V L    GPSNAIEGY
Sbjct: 175  LNDILSLFGDLDLD---DNDLGKNGDLGFSNLRIKENEEVKAEDVSLA---GPSNAIEGY 228

Query: 1955 VPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKN 1776
            VP+R+   KP+  K                     K++ F+S         +S  L  K 
Sbjct: 229  VPQRELISKPTPPKN-------------------NKNKVFDS---------SSSKLGSKK 260

Query: 1775 DESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAKR 1596
            +E F          + ++ +   T++  D+Y  S KP               KQG + K 
Sbjct: 261  EEYF----------VNNELDFAGTIIMNDEYIISKKP------------GSFKQGDRTKL 298

Query: 1595 STQKKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQKDAGDKS 1416
            S++K++   N   MDFTS II  DEY++SK PSG   S        +  K I KD+ DK 
Sbjct: 299  SSKKEDFVIN--EMDFTSEIIMNDEYTISKMPSGSKQSCFDSNLKEVEEKGICKDSEDKC 356

Query: 1415 LAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSCVIAMN 1236
            +    SS   +                   DS I    ST N+ QS  G + SS      
Sbjct: 357  VISGSSSALRE------------------KDSSIVELPSTKNVYQS--GLDTSSAEAEKE 396

Query: 1235 PMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDG-GDLCEFKXXXXXXX 1059
                H+ +A+  S+TV +            R VTWAD+ K  + G G+LCE K       
Sbjct: 397  T---HADKAVTSSETVLKSSLKSAGAKKLNRFVTWADKKKADNAGNGNLCEVKEMETMKG 453

Query: 1058 XXXXXXXXXAGENDS-LRLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLPQP-D 885
                      G +D+ LR  SA A A+ALS+AAEAVASG SDV DAV E G+++LP   +
Sbjct: 454  DSEISGSAEDGGDDNMLRFVSAEACAMALSKAAEAVASGDSDVTDAVYENGLIILPSLCE 513

Query: 884  VNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFATMWN 705
            V+  E   +  ++E + AP+K+PKK  I  +D+ + +DSWFD PPEGFSLTLS FATMWN
Sbjct: 514  VDKEEPMEDGDMLEPETAPVKWPKKPGIPHSDMFNPEDSWFDAPPEGFSLTLSTFATMWN 573

Query: 704  ALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLARALP 525
            ALF W+T SSLAYIYG+D+S HEEYL  NGREYPRKI L DGRSSEIK+T+  C++RALP
Sbjct: 574  ALFEWITSSSLAYIYGRDESFHEEYLSINGREYPRKIALRDGRSSEIKETLASCISRALP 633

Query: 524  GLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQW 405
             +V DL+L  P+STLEQG+  L++T+SFMEALP+FRMKQW
Sbjct: 634  AIVTDLRLPIPISTLEQGMGHLIDTISFMEALPAFRMKQW 673


>gb|EMJ09632.1| hypothetical protein PRUPE_ppa002134mg [Prunus persica]
          Length = 711

 Score =  522 bits (1344), Expect = e-145
 Identities = 320/762 (41%), Positives = 441/762 (57%), Gaps = 18/762 (2%)
 Frame = -3

Query: 2474 TVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLCGSSLPSE 2295
            +VKD V+K+QLALLEGIK Q+ L+ AGS++S+ DY DVVTER I N+CGYPLC ++LPS+
Sbjct: 14   SVKDTVYKLQLALLEGIKTQDHLYLAGSIISRSDYNDVVTERTIANLCGYPLCSNALPSD 73

Query: 2294 --RPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSRINEVL 2121
              RP KG YRISLKEHKVYDL ETYMYCS+ C+I+S  FA SL  ERC   +  ++  +L
Sbjct: 74   SSRPHKGHYRISLKEHKVYDLHETYMYCSSRCVIESKAFAQSLGEERCDVLDFGKVERIL 133

Query: 2120 SLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLE---------------DW 1986
              F     D   E   G   D+G SKLKI+EK ET  G++ +                  
Sbjct: 134  RAFGDVGFD-KGEVGFGEIGDLGISKLKIEEKVETGIGDLGISRLKIEEKSETHIGDLGA 192

Query: 1985 IGPSNAIEGYVPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVC 1806
            +GPSNAIEGYVP+++   KP  SK   +GS+  DAK +    +   + DF S I+T D  
Sbjct: 193  VGPSNAIEGYVPQKERISKPLGSKKNKEGSKGKDAKMSSGMDIIFNEMDFMSTIITSDEY 252

Query: 1805 AASKTLPVKNDESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLN 1626
            + SK  P   +  FE   ++ +K  +   +N S   +    GG  K ++  + C     +
Sbjct: 253  SVSKIPPSVGEPDFE-TKFKKSKGKVGLNKNDSVKKSRQSKGGKNKNVKKDDVCIREVPS 311

Query: 1625 KSKQGHKAKRSTQKKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGK 1446
             S         + K+E                ++E+ V K          GEA   L   
Sbjct: 312  TSDASQTVLNGSTKEE----------------KEEFIVEKAEQS------GEAL--LRSS 347

Query: 1445 LIQKDAGDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGP 1266
            L  K +G K L  ++S T        ++IDST              +++   + +  +  
Sbjct: 348  L--KPSGTKKL--NRSVTWAD-----EMIDSTG-------------SRNLYEVREMEQIM 385

Query: 1265 EGSSCVIAMNPMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDGGDLCE 1086
            E S    +M+          KPS                G   TW DE    +   ++CE
Sbjct: 386  EYSDAFSSMH----------KPS-----------VENKVGCSNTWFDEKIDSTKSKNICE 424

Query: 1085 FKXXXXXXXXXXXXXXXXAGENDSLRLASANAVAIALSQAAEAVASGQSDVADAVSEAGI 906
             +                  EN+ L   SA A A+AL+QAAEAVASG+SDV+ AVS AGI
Sbjct: 425  VREVQDADVLGSLDLQ----ENEILE--SAEACAMALNQAAEAVASGESDVSGAVSGAGI 478

Query: 905  LVLPQPD-VNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTL 729
            ++LP+PD ++  E T +V ++ES+QAPL +P+K  I  +D+ D +DSWFD PPEGFS+TL
Sbjct: 479  IILPRPDGLDEEEPTEDVDMLESEQAPL-WPRKPGIPCSDLFDPEDSWFDAPPEGFSVTL 537

Query: 728  SPFATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMD 549
            SPFATMWN+LFTW+T S+LAYIYG+D+S HEE+L  NGREYP KI L  GRSSEIK+T+D
Sbjct: 538  SPFATMWNSLFTWITSSTLAYIYGRDESFHEEFLSVNGREYPPKIVLAGGRSSEIKKTLD 597

Query: 548  GCLARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALS 369
               ARALPG+V++L+L TP+S+LEQG+ R+L TMSF++A+P+FRMKQWQVIVLLFLE LS
Sbjct: 598  ESFARALPGVVSELRLPTPISSLEQGMGRMLNTMSFIDAIPAFRMKQWQVIVLLFLEGLS 657

Query: 368  IHRIPGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
            + RIP L P +  +   F +VL+  ++S E+Y+ +KD+++PL
Sbjct: 658  VCRIPALTPHMTNRRMLFYKVLENTQISAEQYELMKDLIIPL 699


>ref|XP_006480289.1| PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog [Citrus sinensis]
          Length = 768

 Score =  505 bits (1300), Expect = e-140
 Identities = 331/805 (41%), Positives = 450/805 (55%), Gaps = 59/805 (7%)
 Frame = -3

Query: 2480 VTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLCGSSLP 2301
            +  V DAVHK+QLALLEGI+ +  L AAG+L+SK DY DVVTER+I ++CGYPLC + LP
Sbjct: 3    IKAVNDAVHKLQLALLEGIEAEKQLLAAGTLISKSDYNDVVTERSIADLCGYPLCSNPLP 62

Query: 2300 --SERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSRINE 2127
                R  KGRYRISLKEHKVYD++E Y+YCSTNC+++S  F+ SL  ER    N  +I E
Sbjct: 63   PADSRTRKGRYRISLKEHKVYDVRENYLYCSTNCLVNSKAFSGSLNEERSVVVNEKKIKE 122

Query: 2126 VLSLF--KSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIG---PSNAIE 1962
            VL +   K +  + VE + +   K  G  ++K  E  E   G V +    G    S+AIE
Sbjct: 123  VLRVVIGKVEDDENVESKIV---KLFGGLEVKENENAERNVGGVSVGGGGGGGGASDAIE 179

Query: 1961 GYVPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPV 1782
            GYVP+      P  SK    G      K N  + ++  + DF+SVI+T D  + SK+ P 
Sbjct: 180  GYVPQHKPKPVPPRSK----GVNDKTNKLNTKNDLSFNEMDFKSVIITNDEYSISKS-PC 234

Query: 1781 KNDESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKP--------LQNRESCGNLQLN 1626
             + E+      E+    +  +E +   + +++   SG          + +RES G  +L+
Sbjct: 235  GSTET------ESKSKFVEPEEQEDGEILDNRCTTSGSLASIKDDSCMHSRESTGRDELD 288

Query: 1625 KSK--------QGH------KAKRSTQKKE---TNTN---------FFNMDFTSTIITQD 1524
              +        +GH        K S +KKE   + TN         F  MDFTS I+T D
Sbjct: 289  AQEMPSALDAIEGHVPQTRSMIKSSIKKKEGVNSKTNKPNSKKDLLFNEMDFTSVIMTND 348

Query: 1523 EYSVSKPPSGRSMS-------DVGEAFNGLNGK----------LIQKDAGDKSLAVDKSS 1395
            EYS+SKP  G + +       +  E  +G N +          LI+ D+  KS  V K+ 
Sbjct: 349  EYSISKPHCGSTKTITKTKFEETKENADGENLEDQCAALGSLALIKDDSCRKSKTVVKAE 408

Query: 1394 TSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSCVIAMNPMILHSG 1215
             S Q  P   ++  T            G   STV+ ++  +  + S   ++M    L S 
Sbjct: 409  LSAQKVPSASVLPLT------------GSNISTVDAEREIQVAKESISGVSMPKSSLKSS 456

Query: 1214 EAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDGGDLCEFKXXXXXXXXXXXXXXX 1035
             + K                  G  VTWADE   G    DL E +               
Sbjct: 457  GSKK-----------------VGLSVTWADEKIDGCGSRDLFEVRDMGDDGNDN------ 493

Query: 1034 XAGENDSLRLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLPQP-DVNPNEGTGE 858
                +D LR ASA A A+ALS+ AEAV SG SDVADAVSEAG+++LP P D +  E   +
Sbjct: 494  --NADDMLRFASAGACAMALSRVAEAVMSGDSDVADAVSEAGVIILPSPRDGHEGESMED 551

Query: 857  VAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFATMWNALFTWMTCS 678
              V+E + A LK+P K  I  +++ D +DSW+D PPEGFSLTLSPFATMW A+F W++ S
Sbjct: 552  PDVLEPEAALLKWPSKPGIPRSELFDPEDSWYDEPPEGFSLTLSPFATMWMAIFAWISSS 611

Query: 677  SLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLARALPGLVADLKLA 498
            SLAYIYG+D+S HEEYL  NGREY +KI + DG SS IKQT+ GCLAR  P LVADL+L 
Sbjct: 612  SLAYIYGRDESFHEEYLSVNGREYSQKIIMGDGHSSAIKQTLSGCLARTFPALVADLRLR 671

Query: 497  TPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSIHRIPGLAPRLITKSSN 318
             PVSTLE+GL  LL TMSF++ LP+F++KQWQVI +LFL+ALS+ RIP L P +  ++  
Sbjct: 672  IPVSTLEKGLEGLLNTMSFIDPLPAFKVKQWQVITVLFLDALSVCRIPALTPHMTNRTML 731

Query: 317  FTQVLDGAKMSIEEYDFLKDIVLPL 243
              +VLDGA++S EEY+ +KD ++PL
Sbjct: 732  LRKVLDGAQISAEEYEVMKDFLMPL 756


>gb|EOY34548.1| F2P16.20 protein, putative isoform 4 [Theobroma cacao]
          Length = 607

 Score =  494 bits (1272), Expect = e-137
 Identities = 303/680 (44%), Positives = 398/680 (58%), Gaps = 3/680 (0%)
 Frame = -3

Query: 2495 MAKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLC 2316
            MAK+Q  +V +AVHK+QL LL+GI+D+  L A+GSL+S+ DY+DVVTER I N CGYPLC
Sbjct: 1    MAKEQSISVSEAVHKIQLHLLDGIRDEKQLLASGSLISRSDYEDVVTERTISNTCGYPLC 60

Query: 2315 GSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSR 2136
             + LPSE   KGRYRISLKEHKVYDLQETYM+CSTNC+I+S  FA SL  ERCS  N ++
Sbjct: 61   ANPLPSEPRRKGRYRISLKEHKVYDLQETYMFCSTNCLINSRAFAGSLQEERCSVLNHAK 120

Query: 2135 INEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGY 1956
            +N++LSLF    +D   +  +G+N D+GFS L+I+E  E K  +V L    GPSNAIEGY
Sbjct: 121  LNDILSLFGDLDLD---DNDLGKNGDLGFSNLRIKENEEVKAEDVSLA---GPSNAIEGY 174

Query: 1955 VPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKN 1776
            VP+R+   KP+  K                     K++ F+S         +S  L  K 
Sbjct: 175  VPQRELISKPTPPKN-------------------NKNKVFDS---------SSSKLGSKK 206

Query: 1775 DESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAKR 1596
            +E F          + ++ +   T++  D+Y  S KP               KQG + K 
Sbjct: 207  EEYF----------VNNELDFAGTIIMNDEYIISKKP------------GSFKQGDRTKL 244

Query: 1595 STQKKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGEAFNGLNGKLIQKDAGDKS 1416
            S++K++   N   MDFTS II  DEY++SK PSG   S        +  K I KD+ DK 
Sbjct: 245  SSKKEDFVIN--EMDFTSEIIMNDEYTISKMPSGSKQSCFDSNLKEVEEKGICKDSEDKC 302

Query: 1415 LAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSCVIAMN 1236
            +    SS   +                   DS I    ST N+ QS  G + SS      
Sbjct: 303  VISGSSSALRE------------------KDSSIVELPSTKNVYQS--GLDTSSAEAEKE 342

Query: 1235 PMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDG-GDLCEFKXXXXXXX 1059
                H+ +A+  S+TV +            R VTWAD+ K  + G G+LCE K       
Sbjct: 343  T---HADKAVTSSETVLKSSLKSAGAKKLNRFVTWADKKKADNAGNGNLCEVKEMETMKG 399

Query: 1058 XXXXXXXXXAGENDS-LRLASANAVAIALSQAAEAVASGQSDVADAVSEAGILVLPQP-D 885
                      G +D+ LR  SA A A+ALS+AAEAVASG SDV DAV E G+++LP   +
Sbjct: 400  DSEISGSAEDGGDDNMLRFVSAEACAMALSKAAEAVASGDSDVTDAVYENGLIILPSLCE 459

Query: 884  VNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFATMWN 705
            V+  E   +  ++E + AP+K+PKK  I  +D+ + +DSWFD PPEGFSLTLS FATMWN
Sbjct: 460  VDKEEPMEDGDMLEPETAPVKWPKKPGIPHSDMFNPEDSWFDAPPEGFSLTLSTFATMWN 519

Query: 704  ALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLARALP 525
            ALF W+T SSLAYIYG+D+S HEEYL  NGREYPRKI L DGRSSEIK+T+  C++RALP
Sbjct: 520  ALFEWITSSSLAYIYGRDESFHEEYLSINGREYPRKIALRDGRSSEIKETLASCISRALP 579

Query: 524  GLVADLKLATPVSTLEQGLS 465
             +V DL+L  P+STLEQG++
Sbjct: 580  AIVTDLRLPIPISTLEQGMN 599


>ref|XP_006394906.1| hypothetical protein EUTSA_v10003721mg [Eutrema salsugineum]
            gi|557091545|gb|ESQ32192.1| hypothetical protein
            EUTSA_v10003721mg [Eutrema salsugineum]
          Length = 720

 Score =  493 bits (1270), Expect = e-136
 Identities = 305/766 (39%), Positives = 428/766 (55%), Gaps = 16/766 (2%)
 Frame = -3

Query: 2492 AKDQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLCG 2313
            A+DQ   + DAVHK+QLA+L+GI DQ  LFAAG+LMS+ DY+DVVTER I  +CGYPLC 
Sbjct: 3    ARDQAIAINDAVHKIQLAMLDGITDQKQLFAAGTLMSRLDYEDVVTERTIAKLCGYPLCR 62

Query: 2312 SSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSRI 2133
            +SLPS+   +G+YRISLKEHKVYDL+ET  +CS +C+I+S  F+ +L   R SEF+T ++
Sbjct: 63   ASLPSDVSRRGKYRISLKEHKVYDLRETRKFCSADCLINSRAFSRTLQEARTSEFDTVKL 122

Query: 2132 NEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGYV 1953
            N +L LF   +V+    +++   +D+G S+L I+E TE +GGE  LE W+GPSNA+EGYV
Sbjct: 123  NGILCLFGDSNVN----DSLDVKEDLGLSELTIRESTEVRGGESSLEQWMGPSNAVEGYV 178

Query: 1952 PKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKND 1773
            P      K  + K   K ++ N  K    +     + DF S ++  D  + SK LP    
Sbjct: 179  PFDRSASKSRNGKHDFKATQKNQKKH---EDPPLSEMDFTSTVIISDKYSVSKKLP---- 231

Query: 1772 ESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAKRS 1593
                            +K+      +ED   G GK +   ++    +    K+  + +  
Sbjct: 232  ---------------PQKQASPAGESED---GQGKTIPKEQTAAPPR----KKISRFRLE 269

Query: 1592 TQKKETNTNFFNMDFTS---------TIITQDEYSVSKPPSGRSMSDVGEAFNG-LNGKL 1443
             ++   N+    +DF S         T +T D+YSV    S +      +   G L G L
Sbjct: 270  KERDRKNSGSEGIDFASFGFDGMGCATSVTNDDYSVEYSVSKQPPCSTEDPLGGQLKGDL 329

Query: 1442 IQKDAGDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHA--CSDSKIGIAKSTVNLDQSHEG 1269
               D  +        S S  +  K + +    V+ HA  C+D    +A  +    ++H+ 
Sbjct: 330  QTLDEKNALTGSSSGSNSKGLRTKPEKLRRKVVEFHAATCTDGDKIVAAESYEGLKTHQ- 388

Query: 1268 PEGSSCVIAMNPMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDG-GDL 1092
                              +    S+TV +            R VTWAD+N    DG G L
Sbjct: 389  ------------------DVCSSSETVTKSCLKFSGSTKLNRSVTWADQN----DGRGAL 426

Query: 1091 CEFKXXXXXXXXXXXXXXXXAGENDSLRLASANAVAIALSQAAEAVASGQSDVADAVSEA 912
            CE +                   N   RLA A A A AL+QAAEAV+SG  D +DA ++A
Sbjct: 427  CEVRNNDIKAGLNLSSTDTED-VNSVSRLALAEACATALTQAAEAVSSGDLDASDAAAKA 485

Query: 911  GILVLP---QPDVNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGF 741
            GI++LP   Q D    E   E  + E +   LK+P K  I  +DV D D SW D PPEGF
Sbjct: 486  GIVLLPSTHQLDEEVYEEDVEEEMAEEEPTLLKWPNKPGIPDSDVFDRDQSWIDGPPEGF 545

Query: 740  SLTLSPFATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIK 561
            +LTLS FA MW++LF W + SSLAYIYGKD++ HEE+L  NG+EYPRKI L +G SSEIK
Sbjct: 546  NLTLSTFAIMWDSLFGWASSSSLAYIYGKDEAAHEEFLSVNGKEYPRKIILGEGLSSEIK 605

Query: 560  QTMDGCLARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFL 381
            +T+ GCLARALP +  DL+L   +S LE+GL  LLETMS   A+PSFR++QW+VIVL+FL
Sbjct: 606  ETIAGCLARALPKVATDLRLPIAISELEKGLGSLLETMSLTGAVPSFRVEQWRVIVLVFL 665

Query: 380  EALSIHRIPGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
            +ALS+ RIP +AP +  +++   +VL+G+ +  EEY+ +KDI+LPL
Sbjct: 666  DALSVTRIPRIAPYICNRNN---KVLEGSGIGNEEYETMKDILLPL 708


>ref|XP_006290171.1| hypothetical protein CARUB_v10003849mg [Capsella rubella]
            gi|482558877|gb|EOA23069.1| hypothetical protein
            CARUB_v10003849mg [Capsella rubella]
          Length = 743

 Score =  483 bits (1244), Expect = e-133
 Identities = 318/766 (41%), Positives = 424/766 (55%), Gaps = 18/766 (2%)
 Frame = -3

Query: 2486 DQVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPLCGSS 2307
            +QV  + DAVHK+QLA+LEGI DQN LFAAG L+S+ DY+DVVTER I  +CGYPLC   
Sbjct: 31   NQVIAINDAVHKLQLAMLEGITDQNQLFAAGKLISRLDYEDVVTERTIAKLCGYPLCQRF 90

Query: 2306 LPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTSRINE 2127
            LPS+   +G+YRISLKEHKVYDLQET  +CS  C+IDS TF  +L   R SEF++ ++NE
Sbjct: 91   LPSDVSRRGKYRISLKEHKVYDLQETRKFCSAGCLIDSKTFLGTLQEARTSEFDSVKLNE 150

Query: 2126 VLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEGYVPK 1947
            +L LF    V    + ++  NKD+  SKL I+E  E +GGE  LE W+GPSNA+EGYVP 
Sbjct: 151  ILELFGDSEV----KGSLDVNKDLDLSKLIIRENFEVRGGESSLEQWMGPSNAVEGYVPL 206

Query: 1946 RDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVKNDES 1767
               + K  + K         D K+  ++    KD  F  +  T  V        +  DE 
Sbjct: 207  DQSDCKSRNCKD-------GDFKATQSNQEKHKDPPFSEMDFTSTV--------IMPDE- 250

Query: 1766 FELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAKRSTQ 1587
                 Y  +K  L  K+     +++D   G GK +   ++   +   K K   + ++  +
Sbjct: 251  -----YSVSKLPLQTKQASPVGVSDD---GKGKTVLREQTV--VPATKKKSRFRREKEKE 300

Query: 1586 KKETNTN--------FFNMDFTSTIITQD----EYSVSKPPSGRSMSDVGEAFNG----L 1455
            KK   T+        F  M   S+   +D    EYSVSK P       +     G    L
Sbjct: 301  KKTFGTDGIDLASFGFDEMGCVSSGTGKDGYSVEYSVSKQPQCSMEDSLSYNLKGGLQTL 360

Query: 1454 NGKLIQKDAGDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSH 1275
            +GK     +   S A   S T  +   KKK+    +V+ HA S                 
Sbjct: 361  DGKNNLSGSSSGSNAKG-SRTRAEKSGKKKI----SVEYHANS---------------YE 400

Query: 1274 EGPEGSSCVIAMNPMILHSGEAI-KPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDG- 1101
            +G E    ++A      H  + +   S+TV +            R VTWAD+N    DG 
Sbjct: 401  DGEE----ILAAESYERHKVQDVCSSSETVTKSCLKISGSKKLSRSVTWADQN----DGC 452

Query: 1100 GDLCEFKXXXXXXXXXXXXXXXXAGENDSLRLASANAVAIALSQAAEAVASGQSDVADAV 921
            GDLCE +                 G N   RLA A A A ALSQAAEAV+ G +D +DA 
Sbjct: 453  GDLCEVRNNDFTVGPSLSSNDTKDG-NSLSRLALAEACASALSQAAEAVSLGDTDASDAT 511

Query: 920  SEAGILVLPQPDVNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGF 741
            ++AGI++LP       E T E   +E +   LK+P K  I  +D+ D D SWFD  PEGF
Sbjct: 512  AKAGIVLLPSTHQLDEEVTEEH--IEEEPTLLKWPTKPGIPDSDLFDRDQSWFDGAPEGF 569

Query: 740  SLTLSPFATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIK 561
            +LTLS FA MW++LF W++ SSLAYIYGK++S HEE+L  NG+EYPRKI L DG SSEIK
Sbjct: 570  NLTLSSFAVMWDSLFGWVSSSSLAYIYGKEESAHEEFLSVNGKEYPRKIILGDGLSSEIK 629

Query: 560  QTMDGCLARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFL 381
            +TM GCLARALP +   L+L   +S LE+GL  LLETMS   A+PS +MK+W VIVLLFL
Sbjct: 630  ETMAGCLARALPRVATYLRLPIAISELEKGLGSLLETMSLTGAVPSLKMKEWLVIVLLFL 689

Query: 380  EALSIHRIPGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
            +ALS+ RIP +AP L    SN  ++L+G+ +  +EY+ +KDI LPL
Sbjct: 690  DALSVSRIPLIAPYL----SNINKILEGSGIGNDEYEMMKDIFLPL 731


>ref|NP_974839.1| uncharacterized protein [Arabidopsis thaliana]
            gi|380877125|sp|F4K1B1.1|RPAP2_ARATH RecName:
            Full=Putative RNA polymerase II subunit B1 CTD
            phosphatase RPAP2 homolog; AltName: Full=RNA polymerase
            II-associated protein 2 homolog
            gi|332006215|gb|AED93598.1| uncharacterized protein
            AT5G26760 [Arabidopsis thaliana]
          Length = 735

 Score =  481 bits (1237), Expect = e-133
 Identities = 317/777 (40%), Positives = 430/777 (55%), Gaps = 26/777 (3%)
 Frame = -3

Query: 2495 MAKD-QVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPL 2319
            MAKD +   + DAVHK+QL +LE   DQN LFAA  LMS+ DY+DVVTERAI  +CGY L
Sbjct: 1    MAKDNEAIAINDAVHKLQLYMLENTTDQNQLFAARKLMSRSDYEDVVTERAIAKLCGYTL 60

Query: 2318 CGSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTS 2139
            C   LPS+   +G+YRISLK+HKVYDLQET  +CS  C+IDS TF+ SL   R  EF++ 
Sbjct: 61   CQRFLPSDVSRRGKYRISLKDHKVYDLQETSKFCSAGCLIDSKTFSGSLQEARTLEFDSV 120

Query: 2138 RINEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEG 1959
            ++NE+L LF      L  + ++  NKD+  SKL I+E    +G E+ LE W+GPSNA+EG
Sbjct: 121  KLNEILDLFGD---SLEVKGSLDVNKDLDLSKLMIKENFGVRGEELSLEKWMGPSNAVEG 177

Query: 1958 YVPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGDVCAASKTLPVK 1779
            YVP             + +    ND+K+         + DF S ++  DV + SK LP +
Sbjct: 178  YVP-------------FDRSKSSNDSKATTQSNQEKHEMDFTSTVIMPDVNSVSK-LPPQ 223

Query: 1778 NDESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRE-------SCGNLQLNKS 1620
              ++  ++     K     KE   TV+   K     +  + +E         G  Q   +
Sbjct: 224  TKQASTVVESVDGKGKTVLKE--QTVVPPTKKVSRFRREKEKEKKTFGVDGMGCAQEKTT 281

Query: 1619 KQGHKAK---RSTQKKETNTNFFNMDFTSTIITQD----EYSVSKPPSGRSMSDVGEAFN 1461
                K        +K   N  F  M   S+ +  D    EYSVSK P   SM D      
Sbjct: 282  VLPRKILSFCNEIEKDFKNFGFDEMGLASSAMMSDGYGVEYSVSKQPQ-CSMED------ 334

Query: 1460 GLNGKL---IQKDAGDKSLAVDKSSTST---QIHPKKKLIDSTTVQKHACSDSKIGIAKS 1299
             L+ KL   +Q   G  +L+   S ++T   +  P+K      +V+ HA           
Sbjct: 335  SLSCKLKGDLQTLDGKNTLSGSSSGSNTKGSKTKPEKSRKKIISVEYHA----------- 383

Query: 1298 TVNLDQSHEGPEGSSCVIAMNPMILHSGEAI-KPSKTVARXXXXXXXXXXSGRKVTWADE 1122
                +   +G E    ++A      H  + +   S+ V +            R VTWAD+
Sbjct: 384  ----NSYEDGEE----ILAAESYERHKAQDVCSSSEIVTKSCLKISGSKKLSRSVTWADQ 435

Query: 1121 NKTGSDG-GDLCEFKXXXXXXXXXXXXXXXXAGENDSLRLASANAVAIALSQAAEAVASG 945
            N    DG GDLCE +                   N   RLA A A+A ALSQAAEAV+SG
Sbjct: 436  N----DGRGDLCEVR-NNDNAAGPSLSSNDIEDVNSLSRLALAEALATALSQAAEAVSSG 490

Query: 944  QSDVADAVSEAGILVLP---QPDVNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSD 774
             SD +DA ++AGI++LP   Q D    E   E  + E +   LK+P K  I  +D+ D D
Sbjct: 491  NSDASDATAKAGIILLPSTHQLDEEVTEEHSEEEMTEEEPTLLKWPNKPGIPDSDLFDRD 550

Query: 773  DSWFDLPPEGFSLTLSPFATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKI 594
             SWFD PPEGF+LTLS FA MW++LF W++ SSLAYIYGK++S HEE+L  NG+EYPR+I
Sbjct: 551  QSWFDGPPEGFNLTLSNFAVMWDSLFGWVSSSSLAYIYGKEESAHEEFLLVNGKEYPRRI 610

Query: 593  FLLDGRSSEIKQTMDGCLARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRM 414
             ++DG SSEIKQT+ GCLARALP +V  L+L   +S LE+GL  LLETMS   A+PSFR+
Sbjct: 611  IMVDGLSSEIKQTIAGCLARALPRVVTHLRLPIAISELEKGLGSLLETMSLTGAVPSFRV 670

Query: 413  KQWQVIVLLFLEALSIHRIPGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
            K+W VIVLLFL+ALS+ RIP +AP +    SN  ++L+G+ +  EEY+ +KDI+LPL
Sbjct: 671  KEWLVIVLLFLDALSVSRIPRIAPYI----SNRDKILEGSGIGNEEYETMKDILLPL 723


>gb|AAB61054.1| contains similarity to myosin heavy chain [Arabidopsis thaliana]
          Length = 1133

 Score =  453 bits (1166), Expect = e-124
 Identities = 315/828 (38%), Positives = 428/828 (51%), Gaps = 77/828 (9%)
 Frame = -3

Query: 2495 MAKD-QVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPL 2319
            MAKD +   + DAVHK+QL +LE   DQN LFAA  LMS+ DY+DVVTERAI  +CGY L
Sbjct: 336  MAKDNEAIAINDAVHKLQLYMLENTTDQNQLFAARKLMSRSDYEDVVTERAIAKLCGYTL 395

Query: 2318 CGSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTS 2139
            C   LPS+   +G+YRISLK+HKVYDLQET  +CS  C+IDS TF+ SL   R  EF++ 
Sbjct: 396  CQRFLPSDVSRRGKYRISLKDHKVYDLQETSKFCSAGCLIDSKTFSGSLQEARTLEFDSV 455

Query: 2138 RINEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEG 1959
            ++NE+L LF      L  + ++  NKD+  SKL I+E    +G E+ LE W+GPSNA+EG
Sbjct: 456  KLNEILDLFGDS---LEVKGSLDVNKDLDLSKLMIKENFGVRGEELSLEKWMGPSNAVEG 512

Query: 1958 YVPKRDYNVKPSHSKAYIKGSEFND----AKSNVADGVATKDRDFESVILTGDVCAASKT 1791
            YVP           ++     +F+D    +K+         + DF S ++  DV + SK 
Sbjct: 513  YVP---------FDRSKSSNGKFDDELWYSKATTQSNQEKHEMDFTSTVIMPDVNSVSK- 562

Query: 1790 LPVKNDESFELLPYETTKSLLSKKENKSTVMTED-------------KYGGSGKPLQNRE 1650
            LP +  ++  ++     K     KE      T+               +G  G      +
Sbjct: 563  LPPQTKQASTVVESVDGKGKTVLKEQTVVPPTKKVSRFRREKEKEKKTFGVDGMGCAQEK 622

Query: 1649 SCGNLQLNKSKQGHKAKRS----TQKKETNTNFFNMDFTSTIITQD----EYSVSKPPSG 1494
            +    +   SK     + S     +K   N  F  M   S+ +  D    EYSVSK P  
Sbjct: 623  TTVLPRKILSKHLGSCEDSFCNEIEKDFKNFGFDEMGLASSAMMSDGYGVEYSVSKQPQC 682

Query: 1493 RSMSDVGEAFNG----LNGKLIQKDAGDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHACS 1326
                 +     G    L+GK     +G  S +  K S +     +KK+I   +V+ HA S
Sbjct: 683  SMEDSLSCKLKGDLQTLDGK--NTLSGSSSGSNTKGSKTKPEKSRKKII---SVEYHANS 737

Query: 1325 DSKIGIAKSTVNLDQSHEGPEGSSCVIAMNPMILHSGEAI-KPSKTVARXXXXXXXXXXS 1149
                             +G E    ++A      H  + +   S+ V +           
Sbjct: 738  ---------------YEDGEE----ILAAESYERHKAQDVCSSSEIVTKSCLKISGSKKL 778

Query: 1148 GRKVTWADENKTGSDG-GDLCEFKXXXXXXXXXXXXXXXXAGENDSLRLASANAVAIALS 972
             R VTWAD+N    DG GDLCE +                   N   RLA A A+A ALS
Sbjct: 779  SRSVTWADQN----DGRGDLCEVRNNDNAAGPSLSSNDIED-VNSLSRLALAEALATALS 833

Query: 971  QAAEAVASGQSDVADAV------------------SEAGILVLP---QPDVNPNEGTGEV 855
            QAAEAV+SG SD +DA                   ++AGI++LP   Q D    E   E 
Sbjct: 834  QAAEAVSSGNSDASDASKCIGGVNLAMILWMSICSAKAGIILLPSTHQLDEEVTEEHSEE 893

Query: 854  AVVESKQAPLKFPKKSDISSTDVLDSDDSWFDLPPEGFSLTLSPFATMWNALFTWMTCSS 675
             + E +   LK+P K  I  +D+ D D SWFD PPEGF+LTLS FA MW++LF W++ SS
Sbjct: 894  EMTEEEPTLLKWPNKPGIPDSDLFDRDQSWFDGPPEGFNLTLSNFAVMWDSLFGWVSSSS 953

Query: 674  LAYIYGKDDSLHEEYLFANGREYPRKIFLLDGRSSEIKQTMDGCLARALPGLVADLKLAT 495
            LAYIYGK++S HEE+L  NG+EYPR+I ++DG SSEIKQT+ GCLARALP +V  L+L  
Sbjct: 954  LAYIYGKEESAHEEFLLVNGKEYPRRIIMVDGLSSEIKQTIAGCLARALPRVVTHLRLPI 1013

Query: 494  PVSTLEQGLSRLLETMSFMEALPSFRMKQWQVIVLLFLEALSIHRIPGLAP--------- 342
             +S LE+GL  LLETMS   A+PSFR+K+W VIVLLFL+ALS+ RIP +AP         
Sbjct: 1014 AISELEKGLGSLLETMSLTGAVPSFRVKEWLVIVLLFLDALSVSRIPRIAPYISNRDKVC 1073

Query: 341  ---------------RLITKSSNFTQVLDGAKMSIEEYDFLKDIVLPL 243
                            L+       Q+L+G+ +  EEY+ +KDI+LPL
Sbjct: 1074 SSQLEHNKWRTLTEFNLLINVGEKYQILEGSGIGNEEYETMKDILLPL 1121


>ref|XP_002874325.1| hypothetical protein ARALYDRAFT_326902 [Arabidopsis lyrata subsp.
            lyrata] gi|297320162|gb|EFH50584.1| hypothetical protein
            ARALYDRAFT_326902 [Arabidopsis lyrata subsp. lyrata]
          Length = 1147

 Score =  440 bits (1132), Expect = e-120
 Identities = 323/845 (38%), Positives = 429/845 (50%), Gaps = 94/845 (11%)
 Frame = -3

Query: 2495 MAKD-QVTTVKDAVHKVQLALLEGIKDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPL 2319
            MAKD +   + DAVHK+QLA+L+GI DQN LFAAG L+S+ DY+DVVTER I  +CGYPL
Sbjct: 336  MAKDDEAIAINDAVHKLQLAMLDGINDQNQLFAAGKLISRLDYEDVVTERTIAKLCGYPL 395

Query: 2318 CGSSLPSERPWKGRYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSEFNTS 2139
            C   LPS+   +G+YRISLKEHKVYDLQET  +CS  C+IDS +F+ +L   R SEF++ 
Sbjct: 396  CRRFLPSDVSRRGKYRISLKEHKVYDLQETRKFCSAGCLIDSKSFSGTLQEARTSEFDSV 455

Query: 2138 RINEVLSLFKSQSVDLVEEEAMGRNKDMGFSKLKIQEKTETKGGEVPLEDWIGPSNAIEG 1959
            ++NE+L LF    V    + ++  NKD+  SKL I+E  E +G E+ LE W+GPSNA+EG
Sbjct: 456  KLNEILGLFGDSEV----KGSLDVNKDLDLSKLMIRENFELRGEELSLEQWMGPSNAVEG 511

Query: 1958 YVPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDR---DFESVILTGDVCAASKTL 1788
            YVP    + K    KA   G +F+D   N     + +++   DF S ++  D  + SK  
Sbjct: 512  YVPFDRSHCKSRTGKA---GGKFHDELWNSKATQSNQEKHEMDFTSTVIMPDEYSVSKLP 568

Query: 1787 PVKNDES--------------FELLPYETTKSLL-----SKKENKST------------- 1704
            P     S               E      TK +       +KE K++             
Sbjct: 569  PQTKQASPVGESDGGKGKTVLKEQTVVPPTKKVSRFRREKEKEKKTSGVDGIDLASFGFD 628

Query: 1703 VMTEDKYGGSGKPLQNRESCGNLQLNKSKQGHKAKRSTQ--------KKETNTNFFNMDF 1548
             M  +   G  KP+        +   K    H               K   N  F  M  
Sbjct: 629  AMDWESEDGKAKPVMTDFGQTTVLPKKKLSKHLGSCKDSFCNDPEIFKDIKNFGFDEMGL 688

Query: 1547 TSTIITQD----EYSVSKPPSGRSMSDVGEAFNGLNGKLIQKDAGDKSLAVDKSSTSTQ- 1383
             S+ I  D    EYSVSK P   SM D       L G L   D G  +L+   S ++T+ 
Sbjct: 689  ESSAIMSDGYGVEYSVSKQPQC-SMEDSLSC--NLKGGLQTLD-GKNTLSGSSSGSNTRG 744

Query: 1382 --IHPKKKLIDSTTVQKHACSDSKIGIAKSTVNLDQSHEGPEGSSCVIAMNPMILHSGEA 1209
                P+K      +V+ HA S                 +G E    ++A      H  + 
Sbjct: 745  LKTKPEKSGKKIISVEYHANS---------------YEDGEE----ILAAESYERHKAQD 785

Query: 1208 I-KPSKTVARXXXXXXXXXXSGRKVTWADENKTGSDG-GDLCEFKXXXXXXXXXXXXXXX 1035
            +   SKTV +            R VTWAD+N    DG GDLCE K               
Sbjct: 786  VCSSSKTVTKSCLKISGSKKLSRSVTWADQN----DGRGDLCEVKNHDITAAPSLPSTDT 841

Query: 1034 XAGENDSLRLASANAVAIALSQAAEAVASGQSDVADAV-----------------SEAGI 906
                N   RLA A A A ALSQAAEAV+SG SD +DA                  +EAGI
Sbjct: 842  ED-VNSLSRLALAEACATALSQAAEAVSSGDSDASDASKFIGGFNYAMILWMSISAEAGI 900

Query: 905  LVLPQPDVNPNEGT-------------GEVAVVESKQAPLKFPKKSDISSTDVLDSDDSW 765
            ++LP       E T              E  + E +   LK+P K  I  +D+ D D SW
Sbjct: 901  VLLPSTHQLDEEVTEEHSEEEMTEEEHSEEEMTEEEPTLLKWPNKPGIPDSDLFDRDQSW 960

Query: 764  FDLPPEGFSLTLSPFATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKIFLL 585
            FD PPEGF+LTLS FA MW++LF W++ SSLAYIYGK++S HEE++  NG+EYPR+I L 
Sbjct: 961  FDGPPEGFNLTLSNFAVMWDSLFGWVSSSSLAYIYGKEESAHEEFISVNGKEYPRRIILG 1020

Query: 584  DGRSSEIKQTMDGCLARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRMKQW 405
            DG SSEIK+TM GCLARALP +   L+L   +S LE+GL  LLETMS   A+PSF++K+W
Sbjct: 1021 DGLSSEIKETMAGCLARALPRVTTYLRLPIAISELEKGLGSLLETMSLTGAVPSFKIKEW 1080

Query: 404  QVIVLLFLEALSIHRIPGLAPRLITKSSNFTQVLDGAKMSIEEYDFL-----------KD 258
             VIVLLFL+ALS+ +      RL+T + N   ++ G   S+ E++ L           +D
Sbjct: 1081 LVIVLLFLDALSVSQ-----ARLVTVNFN---IIKGE--SLSEFNLLIMLVKNIRFWKED 1130

Query: 257  IVLPL 243
            I+LPL
Sbjct: 1131 ILLPL 1135


>sp|A2Y040.1|RPAP2_ORYSI RecName: Full=Putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog; AltName: Full=RNA polymerase II-associated
            protein 2 homolog gi|125550741|gb|EAY96450.1|
            hypothetical protein OsI_18345 [Oryza sativa Indica
            Group]
          Length = 726

 Score =  404 bits (1037), Expect = e-109
 Identities = 282/776 (36%), Positives = 411/776 (52%), Gaps = 27/776 (3%)
 Frame = -3

Query: 2492 AKDQVTTVKDAVHKVQLALLEGI--KDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPL 2319
            A+ + TTV  AVH+VQ+AL +G     + LL AA SL+S  DY DVVTER+I + CGYP 
Sbjct: 11   ARMKPTTVASAVHRVQMALYDGAAASREPLLRAAASLLSGPDYADVVTERSIADACGYPA 70

Query: 2318 CGSSLPSERPWKG----RYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSE 2151
            C + LPSE   +G    R+RISL+EH+VYDL+E   +CS  C++ S  F ASLP +R   
Sbjct: 71   CPNPLPSEDA-RGKAAPRFRISLREHRVYDLEEARKFCSERCLVASAAFGASLPPDRPFG 129

Query: 2150 FNTSRINEVLSLFKSQSVD------LVEEEAMGRNKDMGFS-KLKIQEKTETKGGEVPLE 1992
             +  R++ +++LF+            +   A G  K++    K++I EK     GEV L+
Sbjct: 130  VSPDRLDALVALFEGGGGGGGDGGLALGFGASGDGKEVEEGRKVEIMEKEAAGTGEVTLQ 189

Query: 1991 DWIGPSNAIEGYVPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGD 1812
            +WIGPS+AIEGYVP+RD  V     +A    +   +  SN+             ++LT +
Sbjct: 190  EWIGPSDAIEGYVPRRDRVVGGPKKEAKQNDACSAEQSSNINVDSRNASSGESGMVLTEN 249

Query: 1811 VCAASKTLP------VKNDESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRE 1650
              A  K          K DE  ++L    + S++ + E+      +DK        +N+ 
Sbjct: 250  TKAKKKEATKTPLKMFKQDEDNDMLSSCISDSIVKQLEDVVLEEKKDKK-------KNKA 302

Query: 1649 SCGNLQLNKSKQGHKAKRSTQKKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGE 1470
            + G  ++ KSK          K+    +   +DFTSTII  D         G  M D   
Sbjct: 303  AKGTSRVGKSKPA--------KRPVGRDGHEVDFTSTIIMGDH--------GSEMMD--- 343

Query: 1469 AFNGLNGKLIQKDAGDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVN 1290
                 +G L Q +     LA ++ S+S     +   IDS      A ++    +  + VN
Sbjct: 344  -----HGALGQYNFSSSILANEQPSSS-----QYAAIDSV----QAYTEELDELFSNAVN 389

Query: 1289 LDQSHEGPEGSSCVIAMNPMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTG 1110
            + +     +   C +  +   + S  A                    GR V WADEN   
Sbjct: 390  IAKDETSDDSGRCTLRSSLKAVGSKNA--------------------GRSVKWADEN--- 426

Query: 1109 SDGGDLCEFKXXXXXXXXXXXXXXXXAGENDSLRLASANAVAIALSQAAEAVASGQSDVA 930
               G + E                     + S+R  SA A A AL +AAEA++SG S+V 
Sbjct: 427  ---GSVLETSRAFVSHSSKSQESM-----DSSVRRESAEACAAALIEAAEAISSGTSEVE 478

Query: 929  DAVSEAGILVLPQP--------DVNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSD 774
            DAVS+AGI++LP          D + ++  GE  + E  +  +K+PKK+ +  TD+ D D
Sbjct: 479  DAVSKAGIIILPDMVNQQQYNNDYDNDKDAGENEIFEIDRGVVKWPKKTVLLDTDMFDVD 538

Query: 773  DSWFDLPPEGFSLTLSPFATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKI 594
            DSW D PPEGFSLTLS FATMW ALF W++ SSLAY+YG D+S  E+ L A GRE P+K 
Sbjct: 539  DSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKR 598

Query: 593  FLLDGRSSEIKQTMDGCLARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRM 414
             L DG SSEI++ +D C+  ALP LV++L++  PVS LE  L  LL+TMSF++ALPS R 
Sbjct: 599  VLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRS 658

Query: 413  KQWQVIVLLFLEALSIHRIPGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLP 246
            +QWQ++VL+ L+ALS+HR+P LAP +++ S    ++L+ A++S EEYD + D++LP
Sbjct: 659  RQWQLMVLVLLDALSLHRLPALAP-IMSDSKLLQKLLNSAQVSREEYDSMIDLLLP 713


>sp|Q6AVZ9.1|RPAP2_ORYSJ RecName: Full=Putative RNA polymerase II subunit B1 CTD phosphatase
            RPAP2 homolog; AltName: Full=RNA polymerase II-associated
            protein 2 homolog gi|51038243|gb|AAT94046.1| unknown
            protein [Oryza sativa Japonica Group]
            gi|222630100|gb|EEE62232.1| hypothetical protein
            OsJ_17019 [Oryza sativa Japonica Group]
          Length = 726

 Score =  402 bits (1032), Expect = e-109
 Identities = 281/776 (36%), Positives = 410/776 (52%), Gaps = 27/776 (3%)
 Frame = -3

Query: 2492 AKDQVTTVKDAVHKVQLALLEGI--KDQNLLFAAGSLMSKGDYQDVVTERAIVNMCGYPL 2319
            A+ + TTV  AVH+VQ+AL +G     + LL AA SL+S  DY DVVTER+I + CGYP 
Sbjct: 11   ARMKPTTVASAVHRVQMALYDGAAASREPLLRAAASLLSGPDYADVVTERSIADACGYPA 70

Query: 2318 CGSSLPSERPWKG----RYRISLKEHKVYDLQETYMYCSTNCIIDSGTFAASLPAERCSE 2151
            C + LPSE   +G    R+RISL+EH+VYDL+E   +CS  C++ S  F ASLP +R   
Sbjct: 71   CPNPLPSEDA-RGKAAPRFRISLREHRVYDLEEARKFCSERCLVASAAFGASLPPDRPFG 129

Query: 2150 FNTSRINEVLSLFKSQSVD------LVEEEAMGRNKDMGFS-KLKIQEKTETKGGEVPLE 1992
             +  R++ +++LF+            +   A G  K++    K++I EK     GEV L+
Sbjct: 130  VSPDRLDALVALFEGGGGGGDDGGLALGFGASGDGKEVEEGRKVEIMEKEAAGTGEVTLQ 189

Query: 1991 DWIGPSNAIEGYVPKRDYNVKPSHSKAYIKGSEFNDAKSNVADGVATKDRDFESVILTGD 1812
            +WIGPS+AIEGYVP+RD  V     +A    +   +  SN+             ++LT +
Sbjct: 190  EWIGPSDAIEGYVPRRDRVVGGPKKEAKQNDACSAEQSSNINVDSRNASSGESGMVLTEN 249

Query: 1811 VCAASKTLP------VKNDESFELLPYETTKSLLSKKENKSTVMTEDKYGGSGKPLQNRE 1650
              A  K          K DE  ++L    + S++ + E+      +DK        +N+ 
Sbjct: 250  TKAKKKEATKTPLKMFKQDEDNDMLSSCISDSIVKQLEDVVLEEKKDKK-------KNKA 302

Query: 1649 SCGNLQLNKSKQGHKAKRSTQKKETNTNFFNMDFTSTIITQDEYSVSKPPSGRSMSDVGE 1470
            + G  ++ KSK          K+    +   +DFTSTII  D         G  M D   
Sbjct: 303  AKGTSRVGKSKPA--------KRPVGRDGHEVDFTSTIIMGDR--------GSEMMD--- 343

Query: 1469 AFNGLNGKLIQKDAGDKSLAVDKSSTSTQIHPKKKLIDSTTVQKHACSDSKIGIAKSTVN 1290
                 +G L Q +     LA ++ S+S     +   IDS      A ++    +  + VN
Sbjct: 344  -----HGALGQYNFSSSILANEQPSSS-----QYAAIDSV----QAYTEELDELFSNAVN 389

Query: 1289 LDQSHEGPEGSSCVIAMNPMILHSGEAIKPSKTVARXXXXXXXXXXSGRKVTWADENKTG 1110
            + +     +   C +  +   + S  A                    G  V WADEN   
Sbjct: 390  IAKDETSDDSGRCTLRSSLKAVGSKNA--------------------GHSVKWADEN--- 426

Query: 1109 SDGGDLCEFKXXXXXXXXXXXXXXXXAGENDSLRLASANAVAIALSQAAEAVASGQSDVA 930
               G + E                     + S+R  SA A A AL +AAEA++SG S+V 
Sbjct: 427  ---GSVLETSRAFVSHSSKSQESM-----DSSVRRESAEACAAALIEAAEAISSGTSEVE 478

Query: 929  DAVSEAGILVLPQP--------DVNPNEGTGEVAVVESKQAPLKFPKKSDISSTDVLDSD 774
            DAVS+AGI++LP          D + ++  GE  + E  +  +K+PKK+ +  TD+ D D
Sbjct: 479  DAVSKAGIIILPDMVNQQQYNNDYDNDKDAGENEIFEIDRGVVKWPKKTVLLDTDMFDVD 538

Query: 773  DSWFDLPPEGFSLTLSPFATMWNALFTWMTCSSLAYIYGKDDSLHEEYLFANGREYPRKI 594
            DSW D PPEGFSLTLS FATMW ALF W++ SSLAY+YG D+S  E+ L A GRE P+K 
Sbjct: 539  DSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKR 598

Query: 593  FLLDGRSSEIKQTMDGCLARALPGLVADLKLATPVSTLEQGLSRLLETMSFMEALPSFRM 414
             L DG SSEI++ +D C+  ALP LV++L++  PVS LE  L  LL+TMSF++ALPS R 
Sbjct: 599  VLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRS 658

Query: 413  KQWQVIVLLFLEALSIHRIPGLAPRLITKSSNFTQVLDGAKMSIEEYDFLKDIVLP 246
            +QWQ++VL+ L+ALS+HR+P LAP +++ S    ++L+ A++S EEYD + D++LP
Sbjct: 659  RQWQLMVLVLLDALSLHRLPALAP-IMSDSKLLQKLLNSAQVSREEYDSMIDLLLP 713