BLASTX nr result
ID: Rheum21_contig00017661
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00017661
(554 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a... 97 3e-18
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub... 96 4e-18
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum... 94 2e-17
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n... 94 3e-17
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub... 93 4e-17
emb|CBI21137.3| unnamed protein product [Vitis vinifera] 92 6e-17
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a... 92 1e-16
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu... 92 1e-16
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 91 2e-16
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe... 90 4e-16
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 89 5e-16
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise... 87 2e-15
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub... 86 5e-15
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub... 86 5e-15
ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutr... 86 8e-15
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub... 86 8e-15
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [... 85 1e-14
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr... 84 2e-14
ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi... 82 1e-13
ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D sub... 81 1e-13
>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1217
Score = 97.1 bits (240), Expect = 3e-18
Identities = 42/59 (71%), Positives = 52/59 (88%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
E+GE L NFCKKA++ FF ++GL+SHQINSYNDFI +GI+RVF+S+GEI VEPGYDPS
Sbjct: 60 ELGETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPS 118
>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
lycopersicum]
Length = 1217
Score = 96.3 bits (238), Expect = 4e-18
Identities = 42/59 (71%), Positives = 52/59 (88%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
E+GE L NFCKKA++ FF ++GL+SHQINSYNDFI +GI+RVF+S+GEI VEPGYDPS
Sbjct: 60 ELGESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPS 118
>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
Length = 1123
Score = 94.0 bits (232), Expect = 2e-17
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
E+GE L NFCKKA++ FF ++G +SHQINSYNDFI +GI+RVF+S+GEI VEPGYDPS
Sbjct: 54 ELGESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPS 112
>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
Length = 1196
Score = 93.6 bits (231), Expect = 3e-17
Identities = 49/105 (46%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Frame = +1
Query: 244 MGA--DAKEDLGNTSANGKVPWSNANMXXXXXXXXXXXXXXYSDFVEIGELRLANFCKKA 417
MGA DAKED+ +S K S + E+GE+ L NFCK+A
Sbjct: 1 MGASSDAKEDVAMSSKGEKFSGS-----VDMDIDDEEEFNELTSIKELGEVFLQNFCKEA 55
Query: 418 ASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
+++FF ++GL+SHQINSYNDFIR+G+++VF+S G++ VEPGYDPS
Sbjct: 56 STSFFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDPS 100
>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
lycopersicum]
Length = 1219
Score = 93.2 bits (230), Expect = 4e-17
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 12/113 (10%)
Frame = +1
Query: 250 ADAKEDLGNTSANGKVPWSNANMXXXXXXXXXXXXXXYSD------------FVEIGELR 393
+D ED+G +S GK + M + D E+G
Sbjct: 4 SDIMEDVGCSSGKGKTSNGSTMMDFDIDGLFEVGDYDWDDDEDEDDNLDMASIKELGGGF 63
Query: 394 LANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
L NFCKKA++ FF ++GL+SHQI+SYNDFIR+GI++VF+S+GEI VEPGYDPS
Sbjct: 64 LRNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPS 116
>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 92.4 bits (228), Expect = 6e-17
Identities = 52/111 (46%), Positives = 69/111 (62%), Gaps = 4/111 (3%)
Frame = +1
Query: 232 VSPIMGA-DAKEDLGNTSANGKVPWSNANMXXXXXXXXXXXXXXYSDFVEIGELR---LA 399
+S +MGA DAK DLG +S+ G+ + M +EI +L L
Sbjct: 33 ISTLMGASDAKGDLGMSSSMGEKLSNGVQMEIDDDLMGS---------IEIDDLNKEYLK 83
Query: 400 NFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
FCKK A +FF ++GL+ HQINS+NDFI++GI+RVF+S GEI VEPGYDPS
Sbjct: 84 TFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPS 134
>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1219
Score = 91.7 bits (226), Expect = 1e-16
Identities = 40/59 (67%), Positives = 52/59 (88%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
E+G L NFCKKA++ FF ++G++SHQI+SYNDFIR+GI+RVF+S+GEI VEPGYDPS
Sbjct: 58 ELGGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPS 116
>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
Length = 1018
Score = 91.7 bits (226), Expect = 1e-16
Identities = 40/59 (67%), Positives = 52/59 (88%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
E+G L NFCKKA++ FF ++G++SHQI+SYNDFIR+GI+RVF+S+GEI VEPGYDPS
Sbjct: 62 ELGGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPS 120
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 90.5 bits (223), Expect = 2e-16
Identities = 38/63 (60%), Positives = 51/63 (80%)
Frame = +1
Query: 364 SDFVEIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGY 543
+ +IGE +L +FC KAA+ FF ++GL+SHQINSYNDFI +GI++ F+S GE+ VEPGY
Sbjct: 49 TSLTDIGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGY 108
Query: 544 DPS 552
DPS
Sbjct: 109 DPS 111
>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
Length = 1200
Score = 89.7 bits (221), Expect = 4e-16
Identities = 41/59 (69%), Positives = 51/59 (86%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
++GE L FCK+AA AFF ++GL+SHQINSYNDFI++GI+RVF+S GEI VEPGYDPS
Sbjct: 45 DLGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVEPGYDPS 103
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 89.4 bits (220), Expect = 5e-16
Identities = 51/107 (47%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Frame = +1
Query: 244 MGA-DAKEDLGNTSANGKVPWSNANMXXXXXXXXXXXXXXYSDFVEIGELR---LANFCK 411
MGA DAK DLG +S+ G+ + M +EI +L L FCK
Sbjct: 1 MGASDAKGDLGMSSSMGEKLSNGVQMEIDDDLMGS---------IEIDDLNKEYLKTFCK 51
Query: 412 KAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
K A +FF ++GL+ HQINS+NDFI++GI+RVF+S GEI VEPGYDPS
Sbjct: 52 KVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPS 98
>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
Length = 1205
Score = 87.4 bits (215), Expect = 2e-15
Identities = 38/59 (64%), Positives = 50/59 (84%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
++ E + +FC+KAA++FF QHGL+SHQ+NSYN+FI HGI ++F SIGEI VEPGYDPS
Sbjct: 43 DLDEGVVKSFCRKAATSFFEQHGLISHQLNSYNNFINHGIHQLFASIGEIIVEPGYDPS 101
>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1031
Score = 86.3 bits (212), Expect = 5e-15
Identities = 36/59 (61%), Positives = 50/59 (84%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
++GE L +FCKK++ AFF Q+GL+SHQINSYNDFI++GI++ F+ G+I V+PGYDPS
Sbjct: 42 DLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPS 100
>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
sativus]
Length = 1197
Score = 86.3 bits (212), Expect = 5e-15
Identities = 36/59 (61%), Positives = 50/59 (84%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
++GE L +FCKK++ AFF Q+GL+SHQINSYNDFI++GI++ F+ G+I V+PGYDPS
Sbjct: 42 DLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPS 100
>ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutrema salsugineum]
gi|557107799|gb|ESQ48106.1| hypothetical protein
EUTSA_v10019931mg [Eutrema salsugineum]
Length = 1169
Score = 85.5 bits (210), Expect = 8e-15
Identities = 36/62 (58%), Positives = 51/62 (82%)
Frame = +1
Query: 367 DFVEIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYD 546
D ++GE L +FCKKAA++FF ++GL+SHQ+NSYN FI+HG++ VFES GE+ VEP +D
Sbjct: 16 DLSDLGEPFLQSFCKKAATSFFEEYGLISHQLNSYNFFIQHGLQNVFESFGEMVVEPSFD 75
Query: 547 PS 552
P+
Sbjct: 76 PT 77
>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
vesca subsp. vesca]
Length = 1201
Score = 85.5 bits (210), Expect = 8e-15
Identities = 36/59 (61%), Positives = 51/59 (86%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
++GE+ L FCK+A+ +FF+++GL+SHQINSYNDF+ +GI+RVF+S GEI VEP +DPS
Sbjct: 48 DLGEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVEPNFDPS 106
>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1181
Score = 85.1 bits (209), Expect = 1e-14
Identities = 38/59 (64%), Positives = 48/59 (81%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
E+G+ L +FCKKAAS FF ++GL+SHQINSYN FI G++RVF+S GE+ VEPGYD S
Sbjct: 38 ELGKETLQSFCKKAASLFFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSS 96
>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
RNA polymerases IV and V subunit 2-like [Citrus
sinensis] gi|557545145|gb|ESR56123.1| hypothetical
protein CICLE_v10018562mg [Citrus clementina]
Length = 1198
Score = 84.0 bits (206), Expect = 2e-14
Identities = 36/59 (61%), Positives = 49/59 (83%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
++GE L FC+KAA +FF ++GLVSHQINSYN+FI++G+++ F+S GE VEPGYDPS
Sbjct: 41 DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPS 99
>ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata]
gi|297328948|gb|EFH59367.1| NRPD2a [Arabidopsis lyrata
subsp. lyrata]
Length = 1169
Score = 81.6 bits (200), Expect = 1e-13
Identities = 35/57 (61%), Positives = 46/57 (80%)
Frame = +1
Query: 376 EIGELRLANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYD 546
E+GE L +FCKKAA++FF + GL+SHQ+NSYN FI HG++ VFES GE+ VEP +D
Sbjct: 21 ELGETFLQSFCKKAATSFFEEFGLISHQLNSYNFFIEHGLRNVFESFGEMLVEPSFD 77
>ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 81.3 bits (199), Expect = 1e-13
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +1
Query: 394 LANFCKKAASAFFRQHGLVSHQINSYNDFIRHGIKRVFESIGEIKVEPGYDPS 552
L FCK+A+ +FF + GL+SHQINSYN+FI HG++ +F+S+GE+ VEPGYDPS
Sbjct: 66 LEKFCKEASRSFFEEIGLISHQINSYNEFISHGLQELFDSLGEVTVEPGYDPS 118