BLASTX nr result

ID: Rheum21_contig00017604 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00017604
         (293 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004295769.1| PREDICTED: uncharacterized protein LOC101307...    63   5e-08
ref|XP_002864874.1| PHD finger family protein [Arabidopsis lyrat...    59   7e-07
gb|EOY33691.1| PHD finger transcription factor, putative [Theobr...    59   9e-07
ref|XP_002278840.2| PREDICTED: uncharacterized protein LOC100243...    58   2e-06
emb|CBI15934.3| unnamed protein product [Vitis vinifera]               58   2e-06
ref|XP_006344603.1| PREDICTED: uncharacterized protein LOC102581...    57   3e-06
ref|XP_006344601.1| PREDICTED: uncharacterized protein LOC102581...    57   3e-06
ref|XP_004246957.1| PREDICTED: uncharacterized protein LOC101264...    55   8e-06

>ref|XP_004295769.1| PREDICTED: uncharacterized protein LOC101307102 [Fragaria vesca
           subsp. vesca]
          Length = 1222

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 30/76 (39%), Positives = 43/76 (56%)
 Frame = +3

Query: 66  WKQVPTTAEEWPNCVAEYLKLKKRDPDLAKKVRQHLLYLGWKVVYYVSGRIQRIRYNSPD 245
           W       E  P  V EY+ L+K      + +R+HLLYLGWKV Y +     R RY  P+
Sbjct: 411 WLPAELPKESCPGAVDEYVNLRKGQ----RAIRKHLLYLGWKVEYMIDKGRYRFRYLPPN 466

Query: 246 GKSYYSLIKVCEDMQE 293
           G+  YSL+KVC ++++
Sbjct: 467 GQPEYSLVKVCSNLRK 482


>ref|XP_002864874.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297310709|gb|EFH41133.1| PHD finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 555

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +3

Query: 78  PTTAEEWPNCV--AEYLKLKKRDPDLAKKVRQHLLYLGWKVVYYVSGRIQRIRYNSPDGK 251
           P   E+W + V   + ++  KR  DLA KVR+HL  LGW + Y+  G  + +RY SP G+
Sbjct: 15  PGAIEQWISTVKNGKMIEKGKRRSDLAIKVRRHLSALGWVISYFNKGNKRELRYKSPKGR 74

Query: 252 SYYSLIKVC 278
            +YSL K C
Sbjct: 75  WFYSLAKAC 83


>gb|EOY33691.1| PHD finger transcription factor, putative [Theobroma cacao]
          Length = 1274

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +3

Query: 87  AEEWPNCVAEY-LKLKKRDPDLAKKVRQHLLYLGWKVVYYVSGRIQRIRYNSPDGKSYYS 263
           AE  P+ + +Y L  KK    L   VR+HLLY GWK+       I R+RY SP G  YYS
Sbjct: 407 AESCPDAITKYALSGKKHANALRTDVRKHLLYQGWKIESKQDKHIVRVRYISPTGDCYYS 466

Query: 264 LIKVCEDMQE 293
           L K+C D+ +
Sbjct: 467 LYKLCLDLMK 476


>ref|XP_002278840.2| PREDICTED: uncharacterized protein LOC100243375 [Vitis vinifera]
          Length = 1332

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
 Frame = +3

Query: 66  WKQVPTT----AEEWPNCVAEYLKLK--KRDP--DLAKKVRQHLLYLGWKVVYYVSGRIQ 221
           W++V T     AE   + + EY  +   KR P   L + VR+HL YLGWK+ + ++    
Sbjct: 424 WRRVDTDILHGAESCFDAIIEYALISSGKRKPPNSLTENVRKHLSYLGWKIEF-MNKDFP 482

Query: 222 RIRYNSPDGKSYYSLIKVCEDMQ 290
           R RY SP+GK+Y SL +VC+D++
Sbjct: 483 RFRYTSPEGKTYLSLRQVCQDLR 505


>emb|CBI15934.3| unnamed protein product [Vitis vinifera]
          Length = 994

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
 Frame = +3

Query: 66  WKQVPTT----AEEWPNCVAEYLKLK--KRDP--DLAKKVRQHLLYLGWKVVYYVSGRIQ 221
           W++V T     AE   + + EY  +   KR P   L + VR+HL YLGWK+ + ++    
Sbjct: 309 WRRVDTDILHGAESCFDAIIEYALISSGKRKPPNSLTENVRKHLSYLGWKIEF-MNKDFP 367

Query: 222 RIRYNSPDGKSYYSLIKVCEDMQ 290
           R RY SP+GK+Y SL +VC+D++
Sbjct: 368 RFRYTSPEGKTYLSLRQVCQDLR 390


>ref|XP_006344603.1| PREDICTED: uncharacterized protein LOC102581044 isoform X3 [Solanum
           tuberosum]
          Length = 1216

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
 Frame = +3

Query: 51  RAHKPWKQVPTTAEEWPNCVAEY---LKLKKRDPDLAKKVRQHLLYLGWKVVYYVSGRIQ 221
           R    W  +   AE  P+ V+EY        R P+  +K+++HL +LGWK+       I 
Sbjct: 350 RKRVEWMTIAHVAELCPDAVSEYNDNYMSNHRSPESLQKLKKHLFHLGWKIEQPKDCSIT 409

Query: 222 RIRYNSPDGKSYYSLIKVCEDMQE 293
           R RY +PDGK + SL +VC+ +++
Sbjct: 410 RTRYIAPDGKIFQSLRQVCKMLEK 433


>ref|XP_006344601.1| PREDICTED: uncharacterized protein LOC102581044 isoform X1 [Solanum
           tuberosum] gi|565355456|ref|XP_006344602.1| PREDICTED:
           uncharacterized protein LOC102581044 isoform X2 [Solanum
           tuberosum]
          Length = 1217

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
 Frame = +3

Query: 51  RAHKPWKQVPTTAEEWPNCVAEY---LKLKKRDPDLAKKVRQHLLYLGWKVVYYVSGRIQ 221
           R    W  +   AE  P+ V+EY        R P+  +K+++HL +LGWK+       I 
Sbjct: 350 RKRVEWMTIAHVAELCPDAVSEYNDNYMSNHRSPESLQKLKKHLFHLGWKIEQPKDCSIT 409

Query: 222 RIRYNSPDGKSYYSLIKVCEDMQE 293
           R RY +PDGK + SL +VC+ +++
Sbjct: 410 RTRYIAPDGKIFQSLRQVCKMLEK 433


>ref|XP_004246957.1| PREDICTED: uncharacterized protein LOC101264968 [Solanum
           lycopersicum]
          Length = 1217

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
 Frame = +3

Query: 51  RAHKPWKQVPTTAEEWPNCVAEY---LKLKKRDPDLAKKVRQHLLYLGWKVVYYVSGRIQ 221
           R    W  +   AE  P+ V+EY        R P+  +K++ HL +LGWK+       I 
Sbjct: 349 RKRVEWMTIAHVAELCPDAVSEYNDNYMSNHRSPESLQKLKIHLFHLGWKIEQPKDRSIT 408

Query: 222 RIRYNSPDGKSYYSLIKVCEDMQE 293
           R RY +PDGK + SL +VC+ +++
Sbjct: 409 RTRYIAPDGKIFQSLRQVCKMLEK 432


Top