BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00017540
         (229 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]                    103   2e-20
emb|CAN73909.1| hypothetical protein VITISV_029162 [Vitis vinifera]   102   4e-20
emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]   102   5e-20
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]                    100   3e-19
dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|...   100   3e-19
dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana]                    100   3e-19
dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]                    100   3e-19
dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]                    100   3e-19
gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidops...   100   3e-19
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]                    100   3e-19
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...   100   3e-19
dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] gi|338746551|...   100   3e-19
dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]                    100   3e-19
dbj|BAK41507.1| polyprotein [Arabidopsis thaliana]                    100   3e-19
gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis tha...   100   3e-19
gb|AAC02664.1| polyprotein [Arabidopsis thaliana]                      99   5e-19
gb|AAD22324.1| putative retroelement pol polyprotein [Arabidopsi...    99   6e-19
emb|CAA16691.1| retrotransposon - like protein [Arabidopsis thal...    99   8e-19
dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|...    98   1e-18
dbj|BAM44535.1| polyprotein [Arabidopsis thaliana]                     97   2e-18

>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
          Length = 1429

 Score =  103 bits (258), Expect = 2e-20
 Identities = 49/75 (65%), Positives = 58/75 (77%)
 Frame = +2

Query: 2    LKSNQVPVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LA 181
            +    VPVIYCDN GAT LCANPVFH RMK++ALDYHF+R  +Q GA RV+H++  D LA
Sbjct: 1343 ISQTTVPVIYCDNIGATYLCANPVFHSRMKHVALDYHFVRGYIQSGALRVSHVSTKDQLA 1402

Query: 182  DALTKPLTR*RYTML 226
            DALTKPL R R+T L
Sbjct: 1403 DALTKPLPRPRFTEL 1417


>emb|CAN73909.1| hypothetical protein VITISV_029162 [Vitis vinifera]
          Length = 569

 Score =  102 bits (255), Expect = 4e-20
 Identities = 49/71 (69%), Positives = 57/71 (80%)
 Frame = +2

Query: 14  QVPVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALT 193
           Q PVIYCDN GAT LC+NPVFH RMK++ALDYHFIRE+VQ G  RV+HI+  D LADALT
Sbjct: 476 QQPVIYCDNVGATHLCSNPVFHSRMKHVALDYHFIREQVQNGLLRVSHISASDQLADALT 535

Query: 194 KPLTR*RYTML 226
           KPL R ++  L
Sbjct: 536 KPLARPQFNSL 546


>emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]
          Length = 478

 Score =  102 bits (254), Expect = 5e-20
 Identities = 49/71 (69%), Positives = 57/71 (80%)
 Frame = +2

Query: 14  QVPVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALT 193
           Q PVIYCDN GAT LC+NPVFH RMK++ALDYHFIRE+VQ G  RV+HI+  D LADALT
Sbjct: 385 QQPVIYCDNVGATNLCSNPVFHSRMKHVALDYHFIREQVQNGLLRVSHISASDQLADALT 444

Query: 194 KPLTR*RYTML 226
           KPL R ++  L
Sbjct: 445 KPLARPQFDSL 455


>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  100 bits (248), Expect = 3e-19
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +2

Query: 20   PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
            PVIYCDN GAT LCANPVFH RMK+IALDYHFIR +VQ GA RV H++  D LAD LTKP
Sbjct: 1388 PVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKP 1447

Query: 200  LTR 208
            L+R
Sbjct: 1448 LSR 1450


>dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|dbj|BAM44533.1|
            polyprotein [Arabidopsis thaliana]
          Length = 1330

 Score =  100 bits (248), Expect = 3e-19
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +2

Query: 20   PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
            PVIYCDN GAT LCANPVFH RMK+IALDYHFIR +VQ GA RV H++  D LAD LTKP
Sbjct: 1243 PVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKP 1302

Query: 200  LTR 208
            L+R
Sbjct: 1303 LSR 1305


>dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  100 bits (248), Expect = 3e-19
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +2

Query: 20   PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
            PVIYCDN GAT LCANPVFH RMK+IALDYHFIR +VQ GA RV H++  D LAD LTKP
Sbjct: 1388 PVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKP 1447

Query: 200  LTR 208
            L+R
Sbjct: 1448 LSR 1450


>dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  100 bits (248), Expect = 3e-19
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +2

Query: 20   PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
            PVIYCDN GAT LCANPVFH RMK+IALDYHFIR +VQ GA RV H++  D LAD LTKP
Sbjct: 1388 PVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKP 1447

Query: 200  LTR 208
            L+R
Sbjct: 1448 LSR 1450


>dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  100 bits (248), Expect = 3e-19
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +2

Query: 20   PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
            PVIYCDN GAT LCANPVFH RMK+IALDYHFIR +VQ GA RV H++  D LAD LTKP
Sbjct: 1388 PVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKP 1447

Query: 200  LTR 208
            L+R
Sbjct: 1448 LSR 1450


>gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidopsis thaliana]
            gi|7269781|emb|CAB77781.1| putative polyprotein of LTR
            transposon [Arabidopsis thaliana]
          Length = 1456

 Score =  100 bits (248), Expect = 3e-19
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +2

Query: 20   PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
            PVIYCDN GAT LCANPVFH RMK+IALDYHFIR +VQ GA RV H++  D LAD LTKP
Sbjct: 1369 PVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKP 1428

Query: 200  LTR 208
            L+R
Sbjct: 1429 LSR 1431


>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
          Length = 1431

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 46/69 (66%), Positives = 55/69 (79%)
 Frame = +2

Query: 2    LKSNQVPVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LA 181
            ++  + PVIYCDN GAT LCANPVFH RMK+IA+DYHFIR +VQ GA RV H++  D LA
Sbjct: 1345 IRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLA 1404

Query: 182  DALTKPLTR 208
            D LTKPL+R
Sbjct: 1405 DTLTKPLSR 1413


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
            gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 46/69 (66%), Positives = 55/69 (79%)
 Frame = +2

Query: 2    LKSNQVPVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LA 181
            ++  + PVIYCDN GAT LCANPVFH RMK+IA+DYHFIR +VQ GA RV H++  D LA
Sbjct: 1380 IRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLA 1439

Query: 182  DALTKPLTR 208
            D LTKPL+R
Sbjct: 1440 DTLTKPLSR 1448


>dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] gi|338746551|dbj|BAK41505.1|
            polyprotein [Arabidopsis thaliana]
            gi|338746553|dbj|BAK41506.1| polyprotein [Arabidopsis
            thaliana] gi|338746557|dbj|BAK41508.1| polyprotein
            [Arabidopsis thaliana] gi|338746559|dbj|BAK41509.1|
            polyprotein [Arabidopsis thaliana]
          Length = 1447

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 46/69 (66%), Positives = 55/69 (79%)
 Frame = +2

Query: 2    LKSNQVPVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LA 181
            ++  + PVIYCDN GAT LCANPVFH RMK+IA+DYHFIR +VQ GA RV H++  D LA
Sbjct: 1361 IRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLA 1420

Query: 182  DALTKPLTR 208
            D LTKPL+R
Sbjct: 1421 DTLTKPLSR 1429


>dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 46/69 (66%), Positives = 55/69 (79%)
 Frame = +2

Query: 2    LKSNQVPVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LA 181
            ++  + PVIYCDN GAT LCANPVFH RMK+IA+DYHFIR +VQ GA RV H++  D LA
Sbjct: 1380 IRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLA 1439

Query: 182  DALTKPLTR 208
            D LTKPL+R
Sbjct: 1440 DTLTKPLSR 1448


>dbj|BAK41507.1| polyprotein [Arabidopsis thaliana]
          Length = 1447

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 46/69 (66%), Positives = 55/69 (79%)
 Frame = +2

Query: 2    LKSNQVPVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LA 181
            ++  + PVIYCDN GAT LCANPVFH RMK+IA+DYHFIR +VQ GA RV H++  D LA
Sbjct: 1361 IRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLA 1420

Query: 182  DALTKPLTR 208
            D LTKPL+R
Sbjct: 1421 DTLTKPLSR 1429


>gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis thaliana]
            gi|338746561|dbj|BAK41510.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 46/69 (66%), Positives = 55/69 (79%)
 Frame = +2

Query: 2    LKSNQVPVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LA 181
            ++  + PVIYCDN GAT LCANPVFH RMK+IA+DYHFIR +VQ GA RV H++  D LA
Sbjct: 1380 IRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLA 1439

Query: 182  DALTKPLTR 208
            D LTKPL+R
Sbjct: 1440 DTLTKPLSR 1448


>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 47/70 (67%), Positives = 55/70 (78%)
 Frame = +2

Query: 20   PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
            PV+YCDN GAT L ANPVFH RMK+IALD+HF+RE VQ GA RV H++  D LADALTKP
Sbjct: 1371 PVVYCDNVGATYLSANPVFHSRMKHIALDFHFVRESVQAGALRVTHVSTKDQLADALTKP 1430

Query: 200  LTR*RYTMLL 229
            L R  +T L+
Sbjct: 1431 LPRQPFTTLI 1440


>gb|AAD22324.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 387

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 45/69 (65%), Positives = 55/69 (79%)
 Frame = +2

Query: 20  PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
           PV+YCDN GAT LCANPVFH +MK++ALDYHF+R  +Q GA RV+H++  D LADALTKP
Sbjct: 307 PVVYCDNMGATYLCANPVFHSKMKHVALDYHFVRGNIQTGALRVSHLSTKDQLADALTKP 366

Query: 200 LTR*RYTML 226
           L R R+  L
Sbjct: 367 LHRPRFQEL 375


>emb|CAA16691.1| retrotransposon - like protein [Arabidopsis thaliana]
           gi|10177325|dbj|BAB10674.1| copia-like retroelement pol
           polyprotein-like [Arabidopsis thaliana]
          Length = 1021

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 48/69 (69%), Positives = 54/69 (78%)
 Frame = +2

Query: 20  PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
           PV+YCDN GAT LCANPVFH RMK+IA+DYHFIR +VQ G  RVAH+   D LADALTKP
Sbjct: 230 PVVYCDNVGATFLCANPVFHSRMKHIAIDYHFIRGQVQQGILRVAHVNTRDQLADALTKP 289

Query: 200 LTR*RYTML 226
           L R  +T L
Sbjct: 290 LPRNHFTEL 298


>dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|dbj|BAM42648.1|
            polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 46/62 (74%), Positives = 51/62 (82%)
 Frame = +2

Query: 20   PVIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKP 199
            PVIYCDN GAT LCANPVFH RMK+IALDYHFIR +VQ GA RV H++  D LAD LTKP
Sbjct: 1388 PVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKP 1447

Query: 200  LT 205
            L+
Sbjct: 1448 LS 1449


>dbj|BAM44535.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 46/62 (74%), Positives = 51/62 (82%)
 Frame = +2

Query: 23   VIYCDNGGATRLCANPVFHLRMKNIALDYHFIREKVQIGAFRVAHIANDD*LADALTKPL 202
            VIYCDN GAT LCANPVFH RMK+IALDYHFIR +VQ GA RV H++  D LAD LTKPL
Sbjct: 1389 VIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPL 1448

Query: 203  TR 208
            +R
Sbjct: 1449 SR 1450