BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00017174
         (744 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 434   e-119
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   426   e-117
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   426   e-117
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   426   e-117
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   426   e-117
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   426   e-117
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   425   e-117
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   424   e-116
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   423   e-116
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   415   e-114
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   372   e-101
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             321   2e-85
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   321   2e-85
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   308   2e-81
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               303   5e-80
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   285   1e-74
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   283   4e-74
ref|YP_002341559.1| replication-associated protein [Schlumberger...   278   2e-72
gb|AFM77886.1| replicase [Hosta virus X]                              276   5e-72
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   276   5e-72

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  434 bits (1115), Expect = e-119
 Identities = 214/247 (86%), Positives = 221/247 (89%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 802  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 861

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EFS            
Sbjct: 862  TALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPP 921

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VE+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALL
Sbjct: 922  VTHFPVEECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALL 981

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETIKARLTISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQ
Sbjct: 982  WETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQ 1041

Query: 723  NTYLKKS 743
            NTYLKKS
Sbjct: 1042 NTYLKKS 1048


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  426 bits (1094), Expect = e-117
 Identities = 211/247 (85%), Positives = 216/247 (87%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPP 933

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALL
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALL 993

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQ
Sbjct: 994  WETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQ 1053

Query: 723  NTYLKKS 743
            NTYLKKS
Sbjct: 1054 NTYLKKS 1060


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  426 bits (1094), Expect = e-117
 Identities = 211/247 (85%), Positives = 216/247 (87%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPP 933

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALL
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALL 993

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQ
Sbjct: 994  WETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQ 1053

Query: 723  NTYLKKS 743
            NTYLKKS
Sbjct: 1054 NTYLKKS 1060


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  426 bits (1094), Expect = e-117
 Identities = 211/247 (85%), Positives = 216/247 (87%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPP 933

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALL
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALL 993

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQ
Sbjct: 994  WETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQ 1053

Query: 723  NTYLKKS 743
            NTYLKKS
Sbjct: 1054 NTYLKKS 1060


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  426 bits (1094), Expect = e-117
 Identities = 211/247 (85%), Positives = 216/247 (87%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPP 933

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALL
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALL 993

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQ
Sbjct: 994  WETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQ 1053

Query: 723  NTYLKKS 743
            NTYLKKS
Sbjct: 1054 NTYLKKS 1060


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  426 bits (1094), Expect = e-117
 Identities = 211/247 (85%), Positives = 216/247 (87%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPP 933

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALL
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALL 993

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQ
Sbjct: 994  WETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQ 1053

Query: 723  NTYLKKS 743
            NTYLKKS
Sbjct: 1054 NTYLKKS 1060


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  425 bits (1092), Expect = e-117
 Identities = 211/247 (85%), Positives = 215/247 (87%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPP 933

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VED TTTLDDFKE L DKF+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEALL
Sbjct: 934  CTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALL 993

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETI ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQ
Sbjct: 994  WETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQ 1053

Query: 723  NTYLKKS 743
            NTYLKKS
Sbjct: 1054 NTYLKKS 1060


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  424 bits (1090), Expect = e-116
 Identities = 210/247 (85%), Positives = 216/247 (87%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGFQP+PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 814  YGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 873

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+            
Sbjct: 874  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPP 933

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALL
Sbjct: 934  CTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALL 993

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQ
Sbjct: 994  WETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQ 1053

Query: 723  NTYLKKS 743
            NTYLKKS
Sbjct: 1054 NTYLKKS 1060


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 711

 Score =  423 bits (1088), Expect = e-116
 Identities = 207/247 (83%), Positives = 219/247 (88%)
 Frame = +3

Query: 3   YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
           YG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLY
Sbjct: 145 YGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 204

Query: 183 TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
           TALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRED++AEFS            
Sbjct: 205 TALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPP 264

Query: 363 XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                VED TTTLDDF+E L DKF+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALL
Sbjct: 265 CTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALL 324

Query: 543 WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
           WETI ARLTIS+PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQ
Sbjct: 325 WETINARLTISSPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQ 384

Query: 723 NTYLKKS 743
           NTYLKKS
Sbjct: 385 NTYLKKS 391


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  415 bits (1067), Expect = e-114
 Identities = 204/247 (82%), Positives = 214/247 (86%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGFQP PGLHLLVPSL+KKAAFTDAGHKVS+YAGCQGITAPKVQILLDNDTTMCTKEVLY
Sbjct: 819  YGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLY 878

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF             
Sbjct: 879  TALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPP 938

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VE+  TTLDDFKE L DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALL
Sbjct: 939  VTHFPVEEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALL 998

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WE I+ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQ
Sbjct: 999  WEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQ 1058

Query: 723  NTYLKKS 743
            NTYLKK+
Sbjct: 1059 NTYLKKT 1065


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  372 bits (954), Expect = e-101
 Identities = 183/247 (74%), Positives = 203/247 (82%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            YGF+P+PGLHLLVPSLVKKAAF DAGHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLY
Sbjct: 795  YGFRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLY 854

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+ EF+            
Sbjct: 855  TALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPP 914

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VE+ + TL   ++SL+DK++REI    HG TNCVQ +D T QLFSHQQAKDEALL
Sbjct: 915  VTHFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALL 974

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETI ARL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ
Sbjct: 975  WETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQ 1034

Query: 723  NTYLKKS 743
             TYL KS
Sbjct: 1035 QTYLSKS 1041


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  321 bits (822), Expect = 2e-85
 Identities = 162/245 (66%), Positives = 182/245 (74%)
 Frame = +3

Query: 6    GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYT 185
            GFQP   LHLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYT
Sbjct: 822  GFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYT 881

Query: 186  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXX 365
            ALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VRE+ IA                
Sbjct: 882  ALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPK 941

Query: 366  XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 545
                VE+ +  L  + E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLW
Sbjct: 942  THFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLW 1001

Query: 546  ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 725
            ETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQN
Sbjct: 1002 ETIKARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQN 1061

Query: 726  TYLKK 740
            TYL K
Sbjct: 1062 TYLSK 1066


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  321 bits (822), Expect = 2e-85
 Identities = 162/245 (66%), Positives = 182/245 (74%)
 Frame = +3

Query: 6    GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYT 185
            GFQP   LHLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYT
Sbjct: 822  GFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYT 881

Query: 186  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXX 365
            ALSRAV SIHF+N+    S+FWEKLEATPYLK FLS VRE+ IA                
Sbjct: 882  ALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPK 941

Query: 366  XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 545
                VE+ +  L  + E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLW
Sbjct: 942  THFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLW 1001

Query: 546  ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 725
            ETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQN
Sbjct: 1002 ETIKARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQN 1061

Query: 726  TYLKK 740
            TYL K
Sbjct: 1062 TYLSK 1066


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  308 bits (788), Expect = 2e-81
 Identities = 156/247 (63%), Positives = 184/247 (74%)
 Frame = +3

Query: 3    YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 182
            +GFQP   +HLLVPSL+KKAAF++AGHK STYAGCQGITA K+QILLD++T MC++EVLY
Sbjct: 889  HGFQPIKDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLY 948

Query: 183  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 362
            TALSRAVDSIHF+N+   SS FWEKLEATPYLKTFLS+VREDKI E+             
Sbjct: 949  TALSRAVDSIHFINTAPTSSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPP 1008

Query: 363  XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 542
                 VE+  T L++F E L+ K EREIF E+HGHTNCVQ D+   Q  SHQQAKDEALL
Sbjct: 1009 KTHFPVENGNTILEEFTEELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALL 1068

Query: 543  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 722
            WETIKARL IS  + N  EF  KKD+GDILW NY +AM LP++   F E+LW   A E+Q
Sbjct: 1069 WETIKARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQ 1127

Query: 723  NTYLKKS 743
            +TYL KS
Sbjct: 1128 HTYLSKS 1134


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  303 bits (775), Expect = 5e-80
 Identities = 142/243 (58%), Positives = 184/243 (75%)
 Frame = +3

Query: 12   QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTAL 191
            +P+P  HLLVPSL+KK ++T+ G+K STYAGCQGITA +VQ+LLD DTT+C+ +VLYTAL
Sbjct: 1113 RPEPDWHLLVPSLIKKRSYTEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTAL 1172

Query: 192  SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXX 371
            SRAV ++HF+N++A SSAFW+KL +TPYLKTFLS +RED++ E                 
Sbjct: 1173 SRAVHAVHFINTSATSSAFWDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTH 1232

Query: 372  XXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWET 551
              VE++  +L+D  E L +K ERE+++  HG++NCVQ DDP  QLFSHQQAKD+ LLW T
Sbjct: 1233 FPVENENLSLEDKVEELLEKHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWAT 1292

Query: 552  IKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTY 731
            I+ARL IS P+AN+EEFR KK++GD+LW NY +AMKLP +  EFS +LW  CAEEVQ TY
Sbjct: 1293 IEARLKISNPKANMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTY 1352

Query: 732  LKK 740
            L K
Sbjct: 1353 LSK 1355


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  285 bits (728), Expect = 1e-74
 Identities = 138/243 (56%), Positives = 173/243 (71%)
 Frame = +3

Query: 12   QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTAL 191
            +P   +H+LVPSL++K  +T+ G+K STYAGCQGITAPKVQ+LL++DTT+CT +VLYTAL
Sbjct: 944  RPLKEVHMLVPSLIQKKTYTELGYKTSTYAGCQGITAPKVQVLLNSDTTLCTDKVLYTAL 1003

Query: 192  SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXX 371
            SRAV SIHF+N++A S+AFW+KL ATPYLKTFLS VRE  +A                  
Sbjct: 1004 SRAVHSIHFINTSASSAAFWDKLNATPYLKTFLSTVREQSLASAKPREEGPTPVAAPKTH 1063

Query: 372  XXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWET 551
              VE+    L+   E L +K +REIF   HGH+NCVQ D+PT QL SHQQAKD+ LLW T
Sbjct: 1064 VPVENSNLCLEGAVEKLLEKHDREIFRADHGHSNCVQTDNPTIQLSSHQQAKDQTLLWAT 1123

Query: 552  IKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTY 731
            I+ARL ISTPE NL E+  K+++GD+LW +Y  AM LP+E   F + LW  CAEEVQ TY
Sbjct: 1124 IEARLKISTPERNLAEYLMKREVGDVLWLHYKNAMNLPEEPIPFEQTLWDTCAEEVQKTY 1183

Query: 732  LKK 740
            L K
Sbjct: 1184 LSK 1186


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  283 bits (724), Expect = 4e-74
 Identities = 137/243 (56%), Positives = 171/243 (70%)
 Frame = +3

Query: 12   QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTAL 191
            +P    HLLVPS++KK  + + G+K STYAGCQGITAP++QILLD DTT+C  EVLYTAL
Sbjct: 1145 RPLTDTHLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLYTAL 1204

Query: 192  SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXX 371
            SRAV  IHF+N+ A S AFW+KL ATPYLKTFL   RE+++ E                 
Sbjct: 1205 SRAVHGIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGPTTH 1264

Query: 372  XXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWET 551
              VE++   L++  E L +K +REI    HGHTNCVQ +D   QLFSHQQAKD+ALLW T
Sbjct: 1265 FPVENEKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWAT 1324

Query: 552  IKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTY 731
            I+ARL IS P+AN+ EF AKK++GD+L+ +YH+AMKLP +   F EDLW  CA+EVQ TY
Sbjct: 1325 IEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTY 1384

Query: 732  LKK 740
            L K
Sbjct: 1385 LSK 1387


>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
            gi|217316801|gb|AAR11537.2| replication-associated
            protein [Schlumbergera virus X]
          Length = 1545

 Score =  278 bits (710), Expect = 2e-72
 Identities = 134/240 (55%), Positives = 168/240 (70%)
 Frame = +3

Query: 21   PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 200
            PG HLLVPS+ KK A+ + GHKVSTYAGCQGITAP++QIL+DNDT MC+++V+YTALSRA
Sbjct: 990  PGRHLLVPSMYKKQAYGEMGHKVSTYAGCQGITAPEIQILIDNDTPMCSQQVMYTALSRA 1049

Query: 201  VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXV 380
            V +IHFVN+   + AFWEKL ATPYL  FL LVRE+K  + S                 V
Sbjct: 1050 VHAIHFVNTGVTNDAFWEKLAATPYLAAFLRLVREEKTRQPSPTEDPPAQPPAPETHFPV 1109

Query: 381  EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 560
            E+     D   E++ DK  RE+F+E  GH+NCVQ +DP  Q+F HQQA+DE L W TI+A
Sbjct: 1110 ENPKNFFDKIIENMPDKHSRELFSEKDGHSNCVQTEDPIVQMFPHQQARDETLFWATIEA 1169

Query: 561  RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 740
            RL +S+PE N EEF +K+ +GD+L+ NY  AM LPKE  +F E LW  CA+EVQ TYL K
Sbjct: 1170 RLKVSSPEKNFEEFVSKRHIGDVLFENYKLAMGLPKEPIQFDEGLWNVCADEVQRTYLSK 1229


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  276 bits (706), Expect = 5e-72
 Identities = 134/240 (55%), Positives = 165/240 (68%)
 Frame = +3

Query: 21   PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 200
            P +H+LVPSL+KKA   + GHK STYAGCQG+T  KVQI LD++TT+C+ EVLYTALSRA
Sbjct: 900  PEMHILVPSLLKKATLEELGHKCSTYAGCQGVTLSKVQIYLDSNTTLCSNEVLYTALSRA 959

Query: 201  VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXV 380
            V+ I+FVNS   +  FW KLEATPYLKTFL L RE+KI E +                 V
Sbjct: 960  VEQINFVNSGPFNGPFWAKLEATPYLKTFLRLTREEKINEITPEEPKPKEPEPPKTHFPV 1019

Query: 381  EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 560
            E          E + +K  REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+A
Sbjct: 1020 ETSAHLYSSITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEA 1079

Query: 561  RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 740
            RL I+T EAN++E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K
Sbjct: 1080 RLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSK 1139


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  276 bits (706), Expect = 5e-72
 Identities = 134/240 (55%), Positives = 165/240 (68%)
 Frame = +3

Query: 21   PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 200
            P +H+LVPSL+KKA   + GHK STYAGCQG+T  KVQI LD++TT+C+ EVLYTALSRA
Sbjct: 934  PEMHILVPSLLKKATLEELGHKCSTYAGCQGVTLSKVQIYLDSNTTLCSNEVLYTALSRA 993

Query: 201  VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXV 380
            V+ I+FVNS   +  FW KLEATPYLKTFL L RE+KI E +                 V
Sbjct: 994  VEQINFVNSGPFNGPFWAKLEATPYLKTFLRLTREEKINEITPEEPKPKEPEPPKTHFPV 1053

Query: 381  EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 560
            E          E + +K  REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+A
Sbjct: 1054 ETSAHLYSSITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEA 1113

Query: 561  RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 740
            RL I+T EAN++E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K
Sbjct: 1114 RLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSK 1173