BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00017173
         (713 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 370   e-100
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   360   3e-97
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   360   3e-97
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   360   3e-97
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   360   3e-97
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   360   3e-97
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   358   9e-97
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   358   1e-96
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   355   6e-96
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   350   3e-94
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   305   1e-80
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   274   2e-71
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             273   5e-71
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   254   1e-65
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               254   3e-65
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   244   2e-62
gb|ACB59265.1| replicase [Tulip virus X]                              238   1e-60
gb|AFM77886.1| replicase [Hosta virus X]                              236   5e-60
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   236   5e-60
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   235   1e-59

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  370 bits (950), Expect = e-100
 Identities = 186/237 (78%), Positives = 195/237 (82%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKIEEFSA                VE+ TT LDDF+E L DKF+REIFTEAHGHTNC
Sbjct: 900  VREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFREELHDKFDREIFTEAHGHTNC 959

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAKKDLGDILW NYHKAM
Sbjct: 960  VQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAM 1019

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
             LPKEQP+FSE+LWTR                   S++Q+KGGERRQSPDFHEHQILIFL
Sbjct: 1020 NLPKEQPDFSEELWTR-------CAEEVQNTYLKKSLNQLKGGERRQSPDFHEHQILIFL 1072

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE
Sbjct: 1073 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 1129


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  360 bits (923), Expect = 3e-97
 Identities = 183/237 (77%), Positives = 188/237 (79%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKIEEF+A                VED TTTLDDFKE L DKF+REIF  AHGHTNC
Sbjct: 912  VREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNC 971

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAM
Sbjct: 972  VQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAM 1031

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
            KLP EQP+FSEDLW R                   S+SQIKGGERRQSPDFHEHQILIFL
Sbjct: 1032 KLPSEQPDFSEDLWIR-------CAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFL 1084

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1085 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  360 bits (923), Expect = 3e-97
 Identities = 183/237 (77%), Positives = 188/237 (79%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKIEEF+A                VED TTTLDDFKE L DKF+REIF  AHGHTNC
Sbjct: 912  VREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNC 971

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAM
Sbjct: 972  VQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAM 1031

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
            KLP EQP+FSEDLW R                   S+SQIKGGERRQSPDFHEHQILIFL
Sbjct: 1032 KLPSEQPDFSEDLWIR-------CAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFL 1084

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1085 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  360 bits (923), Expect = 3e-97
 Identities = 183/237 (77%), Positives = 188/237 (79%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKIEEF+A                VED TTTLDDFKE L DKF+REIF  AHGHTNC
Sbjct: 912  VREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNC 971

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAM
Sbjct: 972  VQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAM 1031

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
            KLP EQP+FSEDLW R                   S+SQIKGGERRQSPDFHEHQILIFL
Sbjct: 1032 KLPSEQPDFSEDLWIR-------CAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFL 1084

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1085 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  360 bits (923), Expect = 3e-97
 Identities = 183/237 (77%), Positives = 188/237 (79%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKIEEF+A                VED TTTLDDFKE L DKF+REIF  AHGHTNC
Sbjct: 912  VREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNC 971

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAM
Sbjct: 972  VQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAM 1031

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
            KLP EQP+FSEDLW R                   S+SQIKGGERRQSPDFHEHQILIFL
Sbjct: 1032 KLPSEQPDFSEDLWIR-------CAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFL 1084

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1085 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  360 bits (923), Expect = 3e-97
 Identities = 183/237 (77%), Positives = 188/237 (79%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKIEEF+A                VED TTTLDDFKE L DKF+REIF  AHGHTNC
Sbjct: 912  VREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNC 971

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAM
Sbjct: 972  VQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAM 1031

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
            KLP EQP+FSEDLW R                   S+SQIKGGERRQSPDFHEHQILIFL
Sbjct: 1032 KLPSEQPDFSEDLWIR-------CAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFL 1084

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1085 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  358 bits (919), Expect = 9e-97
 Identities = 182/237 (76%), Positives = 188/237 (79%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKIEEF+A                VED TTTLDDFKE L DKF+REIF   HGHTNC
Sbjct: 912  VREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNC 971

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEANL EFRAKKDLGDILW NY KAM
Sbjct: 972  VQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAM 1031

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
            KLP EQP+FSEDLW R                   S++QIKGGERRQSPDFHEHQILIFL
Sbjct: 1032 KLPNEQPDFSEDLWIR-------CAEEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFL 1084

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNIMINCE
Sbjct: 1085 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNIMINCE 1141


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  358 bits (918), Expect = 1e-96
 Identities = 182/237 (76%), Positives = 187/237 (78%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKIEEF+A                VED TTTLDDFKE L DKF+REIF  AHGHTNC
Sbjct: 912  VREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNC 971

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAM
Sbjct: 972  VQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAM 1031

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
            KLP EQP+FSEDLW R                   S+SQIKGGERRQSPDFHEH ILIFL
Sbjct: 1032 KLPSEQPDFSEDLWIR-------CAEEVQNTYLKKSVSQIKGGERRQSPDFHEHHILIFL 1084

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1085 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 711

 Score =  355 bits (912), Expect = 6e-96
 Identities = 178/237 (75%), Positives = 190/237 (80%)
 Frame = +2

Query: 2   VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
           VRED++ EFSA                VED TTTLDDF+E L DKF+REIF +AHGHTNC
Sbjct: 243 VREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHTNC 302

Query: 182 VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
           VQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY KAM
Sbjct: 303 VQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRKAM 362

Query: 362 KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
           KLP EQP+FSEDLWTR                   S++QIKGG+RRQSPDFHEHQILIFL
Sbjct: 363 KLPNEQPDFSEDLWTR-------CAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFL 415

Query: 542 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
           KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 416 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 472


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  350 bits (897), Expect = 3e-94
 Identities = 176/237 (74%), Positives = 187/237 (78%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKI EF A                VE+  TTLDDFKE L DKF+REIFT   GHTNC
Sbjct: 917  VREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKEELRDKFDREIFTSDRGHTNC 976

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM
Sbjct: 977  VQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAM 1036

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
             LPKEQP+FSEDLW R                   +++Q+KGGERRQSPDFHEHQILIFL
Sbjct: 1037 GLPKEQPDFSEDLWNR-------CAEEVQNTYLKKTMAQLKGGERRQSPDFHEHQILIFL 1089

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE
Sbjct: 1090 KSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 1146


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  305 bits (780), Expect = 1e-80
 Identities = 157/237 (66%), Positives = 176/237 (74%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VRE K+EEF+A                VE+ + TL   ++SL+DK++REI    HG TNC
Sbjct: 893  VREHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLIQDSLADKYDREILNTNHGFTNC 952

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ +D T QLFSHQQAKDEALLWETI ARL +STPEANL EF AKKDLGD+LW NYH+AM
Sbjct: 953  VQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAM 1012

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
            KLPKEQP+FS +LW R                   S+ QIKGGERRQSPDF E++ILIFL
Sbjct: 1013 KLPKEQPDFSPELWER-------CAAEVQQTYLSKSLQQIKGGERRQSPDFPENKILIFL 1065

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIMINCE
Sbjct: 1066 KSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCE 1122


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  274 bits (701), Expect = 2e-71
 Identities = 139/210 (66%), Positives = 156/210 (74%)
 Frame = +2

Query: 83   VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 262
            VE+ +  L  + E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIK
Sbjct: 946  VENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIK 1005

Query: 263  ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRXXXXXXXXXXX 442
            ARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FSEDLW             
Sbjct: 1006 ARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLW-------RLSAAE 1058

Query: 443  XXXXXXXXSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQ 622
                     ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQ
Sbjct: 1059 VQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQ 1118

Query: 623  HAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            HAVMLYGTMARYMRRFR+AL PN+I INCE
Sbjct: 1119 HAVMLYGTMARYMRRFREALGPNHIKINCE 1148


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  273 bits (697), Expect = 5e-71
 Identities = 138/210 (65%), Positives = 155/210 (73%)
 Frame = +2

Query: 83   VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 262
            VE+ +  L  + E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIK
Sbjct: 946  VENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIK 1005

Query: 263  ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRXXXXXXXXXXX 442
            ARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FSEDLW             
Sbjct: 1006 ARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLW-------RLSAAE 1058

Query: 443  XXXXXXXXSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQ 622
                     ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQ
Sbjct: 1059 VQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQ 1118

Query: 623  HAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            HAVMLYGTMARYMRRFR+ L PN+I INCE
Sbjct: 1119 HAVMLYGTMARYMRRFREVLGPNHIKINCE 1148


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  254 bits (650), Expect = 1e-65
 Identities = 139/237 (58%), Positives = 154/237 (64%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            VREDKI E+                  VE+  T L++F E L+ K EREIF E+HGHTNC
Sbjct: 987  VREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQKHEREIFNESHGHTNC 1046

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ D+   Q  SHQQAKDEALLWETIKARL IS  + N  EF  KKD+GDILW NY +AM
Sbjct: 1047 VQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKKDIGDILWLNYKRAM 1106

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
             LP++   F E+LW                     S   +K GERRQSPDF E  ILIFL
Sbjct: 1107 HLPEDPIPF-EELWE-------LAAREIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFL 1158

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD   P +IMINCE
Sbjct: 1159 KSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEHIMINCE 1215


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  254 bits (648), Expect = 3e-65
 Identities = 128/237 (54%), Positives = 157/237 (66%)
 Frame = +2

Query: 2    VREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNC 181
            +RED++ E                   VE++  +L+D  E L +K ERE+++  HG++NC
Sbjct: 1208 LREDRLREEGPKPETPEEPKPATTHFPVENENLSLEDKVEELLEKHERELYSSDHGYSNC 1267

Query: 182  VQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAM 361
            VQ DDP  QLFSHQQAKD+ LLW TI+ARL IS P+AN+EEFR KK++GD+LW NY +AM
Sbjct: 1268 VQTDDPVVQLFSHQQAKDQTLLWATIEARLKISNPKANMEEFRMKKNVGDVLWLNYKRAM 1327

Query: 362  KLPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFL 541
            KLP +  EFS +LW                      ++ IK GE RQSPDF +H I +FL
Sbjct: 1328 KLPDKPIEFSHELW-------HACAEEVQKTYLSKPLNMIKNGENRQSPDFDKHTISLFL 1380

Query: 542  KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            KSQWVKK+EKLGA KIKPGQTIASFQQ  VMLYGTMARYMRR R A  P NI +NCE
Sbjct: 1381 KSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGTMARYMRRIRQAFQPPNIQLNCE 1437


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  244 bits (623), Expect = 2e-62
 Identities = 127/236 (53%), Positives = 155/236 (65%)
 Frame = +2

Query: 5    REDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCV 184
            RE++++E                   VE++   L++  E L +K +REI    HGHTNCV
Sbjct: 1241 REERLKESQPREQEPTEPEGPTTHFPVENEKFVLEEQVEELLEKHDREILRPDHGHTNCV 1300

Query: 185  QGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMK 364
            Q +D   QLFSHQQAKD+ALLW TI+ARL IS P+AN+ EF AKK++GD+L+ +YH+AMK
Sbjct: 1301 QTEDAVIQLFSHQQAKDQALLWATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMK 1360

Query: 365  LPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFLK 544
            LP +   F EDLW                      I+ +K GE RQSPDF ++ I +FLK
Sbjct: 1361 LPDKPIPFMEDLWV-------ACAQEVQGTYLSKPINMLKNGEYRQSPDFDKNTIALFLK 1413

Query: 545  SQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            SQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR R+A  P  IMINCE
Sbjct: 1414 SQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRMREAFQPPEIMINCE 1469


>gb|ACB59265.1| replicase [Tulip virus X]
          Length = 235

 Score =  238 bits (608), Expect = 1e-60
 Identities = 120/160 (75%), Positives = 129/160 (80%)
 Frame = +2

Query: 233 DEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRX 412
           DEALLWETI ARL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW R 
Sbjct: 1   DEALLWETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERC 60

Query: 413 XXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIK 592
                             S+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIK
Sbjct: 61  AAEVQQTYLSK-------SLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIK 113

Query: 593 PGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
           PGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIMINCE
Sbjct: 114 PGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCE 153


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  236 bits (602), Expect = 5e-60
 Identities = 121/236 (51%), Positives = 147/236 (62%)
 Frame = +2

Query: 5    REDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCV 184
            RE+KI E +                 VE          E + +K  REI+ + HGHTNCV
Sbjct: 993  REEKINEITPEEPKPKEPEPPKTHFPVETSAHLYSSITEEMPEKHAREIYNKTHGHTNCV 1052

Query: 185  QGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMK 364
            Q D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++E   K+D+GD+L+  YHKAM 
Sbjct: 1053 QTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMG 1112

Query: 365  LPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFLK 544
            LPK+   F  DLW                      I+ IK GE+RQ PDF ++ I++FLK
Sbjct: 1113 LPKDPIPFENDLW-------ETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLK 1165

Query: 545  SQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            SQWVKKMEKLGA  IKPGQTIASF Q  VMLYGTMARYMRR RD   P +I+INCE
Sbjct: 1166 SQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCE 1221


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  236 bits (602), Expect = 5e-60
 Identities = 121/236 (51%), Positives = 147/236 (62%)
 Frame = +2

Query: 5    REDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCV 184
            RE+KI E +                 VE          E + +K  REI+ + HGHTNCV
Sbjct: 1027 REEKINEITPEEPKPKEPEPPKTHFPVETSAHLYSSITEEMPEKHAREIYNKTHGHTNCV 1086

Query: 185  QGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMK 364
            Q D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++E   K+D+GD+L+  YHKAM 
Sbjct: 1087 QTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMG 1146

Query: 365  LPKEQPEFSEDLWTRXXXXXXXXXXXXXXXXXXXSISQIKGGERRQSPDFHEHQILIFLK 544
            LPK+   F  DLW                      I+ IK GE+RQ PDF ++ I++FLK
Sbjct: 1147 LPKDPIPFENDLW-------ETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLK 1199

Query: 545  SQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 712
            SQWVKKMEKLGA  IKPGQTIASF Q  VMLYGTMARYMRR RD   P +I+INCE
Sbjct: 1200 SQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCE 1255


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  235 bits (599), Expect = 1e-59
 Identities = 118/210 (56%), Positives = 142/210 (67%)
 Frame = +2

Query: 83   VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 262
            VE+    L+   E L +K +REIF   HGH+NCVQ D+PT QL SHQQAKD+ LLW TI+
Sbjct: 1066 VENSNLCLEGAVEKLLEKHDREIFRADHGHSNCVQTDNPTIQLSSHQQAKDQTLLWATIE 1125

Query: 263  ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRXXXXXXXXXXX 442
            ARL ISTPE NL E+  K+++GD+LW +Y  AM LP+E   F + LW             
Sbjct: 1126 ARLKISTPERNLAEYLMKREVGDVLWLHYKNAMNLPEEPIPFEQTLW-------DTCAEE 1178

Query: 443  XXXXXXXXSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQ 622
                     +  +K GE RQSPDFH++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ
Sbjct: 1179 VQKTYLSKPMHMLKNGELRQSPDFHKNTIALFLKSQWVKKMEKLGADKIKPGQTIASFQQ 1238

Query: 623  HAVMLYGTMARYMRRFRDALSPNNIMINCE 712
             AVMLYGTMARYMRR R+   P ++ INCE
Sbjct: 1239 AAVMLYGTMARYMRRMREVFQPTHVFINCE 1268