BLASTX nr result
ID: Rheum21_contig00014810
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00014810
(2088 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s... 504 e-140
emb|CBI17549.3| unnamed protein product [Vitis vinifera] 504 e-140
gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theo... 464 e-128
ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu... 455 e-125
ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citr... 454 e-125
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 449 e-123
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s... 449 e-123
gb|EOX91150.1| Transcription regulators,zinc ion binding, putati... 446 e-122
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin... 441 e-121
gb|EOX91149.1| Transcription regulators,zinc ion binding, putati... 431 e-118
ref|XP_006395054.1| hypothetical protein EUTSA_v10003751mg [Eutr... 414 e-113
gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Mor... 410 e-111
ref|XP_006590438.1| PREDICTED: DNA-directed RNA polymerase III s... 404 e-109
ref|XP_004300617.1| PREDICTED: DNA-directed RNA polymerase III s... 403 e-109
gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus pe... 401 e-109
ref|XP_002863995.1| hypothetical protein ARALYDRAFT_495012 [Arab... 400 e-108
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5... 398 e-108
ref|XP_006425716.1| hypothetical protein CICLE_v10025048mg [Citr... 397 e-108
ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|1017... 395 e-107
ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III s... 385 e-104
>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
vinifera]
Length = 672
Score = 504 bits (1298), Expect = e-140
Identities = 271/580 (46%), Positives = 366/580 (63%), Gaps = 11/580 (1%)
Frame = +1
Query: 112 EEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKEC-KIRVKPASTDVEIEL 288
+ED VVREIDV+F P P D TK++VLQYPLRP WRPYEL + C ++RVKPAS +VE++L
Sbjct: 98 DEDPVVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDL 157
Query: 289 PVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRPS 468
+DV+S N+DP+AP+AQR K TLS+ W+P Q T Y +GV G++LHLNP+ AV QLRPS
Sbjct: 158 SIDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPS 217
Query: 469 MDFLNPSASKKKNVSEVPTKATSSTAESFRNPNKVMDQKDNEPCIPLEFHDSSSHLSARY 648
M++L+ +K+KN V S+ N + + + +PL++H S S SARY
Sbjct: 218 MEYLSSGGAKRKN--NVTGDTNSAVKLEVSNEEESVGSLKKQSWVPLKYHSSESDFSARY 275
Query: 649 RAKMLSAMRSPLTFPMKPVDYLDSLCPQ-AAIDKTKPVAXXXXXXXXXXXXXXXXXVFTE 825
KM++ SP+ F M P +Y++SLCP + D + + E
Sbjct: 276 LQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCE 335
Query: 826 GAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYPDAKG--HLLRDYVL 999
G P+H+FSALKH+APD+ EDVL V+ + A LVQGLWV K+++ +P +G L RDY+L
Sbjct: 336 GPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYIL 395
Query: 1000 CRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDWKFREPTDLMFIKHHPEI 1179
FS G I YS ++ ++ K +A ERP DWKF+EPTD+ F+K HP+I
Sbjct: 396 LLFSKGPLINYSQVDVPGSLNK--ALKGFLSILAVERPSFRDWKFKEPTDVSFMKLHPDI 453
Query: 1180 VEKYEQMWKAKEEQLLPRIK--PKRNPTNANASGKP-----TPAVAPNPGAMNSASGAGT 1338
V + ++W++ E+Q+ I +R P N SGKP T + GA + +G
Sbjct: 454 VREQRRVWESLEKQITDIIHGGGRRGPVTKN-SGKPSIANKTGTSTKSDGATRATNGTPV 512
Query: 1339 ERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPKNDASVIKAAALC 1518
R + E REALPKAL ++F+ HKVCSFQ ICQ LR +A++ S PK D AAA
Sbjct: 513 RRTAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTFVAAAYG 572
Query: 1519 LTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGKGPNAKVKKSEIV 1698
APQE+L IIS+ +HG YV K +SEH E NPLR VV+ LF GK PNAK+K+++I+
Sbjct: 573 ADAPQEELHAIISKYATTVHGVYVWK-TSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIM 631
Query: 1699 EAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDGKP 1818
EAAK+ L+KE T E+ KVVSE CES GS+WVLKSGDGKP
Sbjct: 632 EAAKIALKKEITTHEYNKVVSELCESRGSLWVLKSGDGKP 671
>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 504 bits (1297), Expect = e-140
Identities = 274/594 (46%), Positives = 370/594 (62%), Gaps = 25/594 (4%)
Frame = +1
Query: 112 EEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKEC-KIRVKPASTDVEIEL 288
+ED VVREIDV+F P P D TK++VLQYPLRP WRPYEL + C ++RVKPAS +VE++L
Sbjct: 98 DEDPVVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDL 157
Query: 289 PVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRPS 468
+DV+S N+DP+AP+AQR K TLS+ W+P Q T Y +GV G++LHLNP+ AV QLRPS
Sbjct: 158 SIDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPS 217
Query: 469 MDFLNPSASKKKN--------VSEVPTKATSSTAESFRNPNKVMDQKDN------EPCIP 606
M++L+ +K+KN ++ + S + NK+M D E +P
Sbjct: 218 MEYLSSGGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQNKIMGILDEQNTDAAESWVP 277
Query: 607 LEFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQ-AAIDKTKPVAXXXXXXX 783
L++H S S SARY KM++ SP+ F M P +Y++SLCP + D +
Sbjct: 278 LKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLL 337
Query: 784 XXXXXXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYP 963
+ EG P+H+FSALKH+APD+ EDVL V+ + A LVQGLWV K+++ +P
Sbjct: 338 SMPLEERFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFP 397
Query: 964 DAKG--HLLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDWKFR 1137
+G L RDY+L FS G I YS ++ ++ K +A ERP DWKF+
Sbjct: 398 GGQGVAPLARDYILLLFSKGPLINYSQVDVPGSLNK--ALKGFLSILAVERPSFRDWKFK 455
Query: 1138 EPTDLMFIKHHPEIVEKYEQMWKAKEEQLLPRIK--PKRNPTNANASGKP-----TPAVA 1296
EPTD+ F+K HP+IV + ++W++ E+Q+ I +R P N SGKP T
Sbjct: 456 EPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKN-SGKPSIANKTGTST 514
Query: 1297 PNPGAMNSASGAGTERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSAL 1476
+ GA + +G R + E REALPKAL ++F+ HKVCSFQ ICQ LR +A++ S
Sbjct: 515 KSDGATRATNGTPVRRTAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTS 574
Query: 1477 PKNDASVIKAAALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFI 1656
PK D AAA APQE+L IIS+ +HG YV K +SEH E NPLR VV+ LF
Sbjct: 575 PKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGVYVWK-TSEHSEHNPLRKVVVDLFC 633
Query: 1657 GKGPNAKVKKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDGKP 1818
GK PNAK+K+++I+EAAK+ L+KE T E+ KVVSE CES GS+WVLKSGDGKP
Sbjct: 634 GKEPNAKLKRADIMEAAKIALKKEITTHEYNKVVSELCESRGSLWVLKSGDGKP 687
>gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
Length = 700
Score = 464 bits (1194), Expect = e-128
Identities = 270/597 (45%), Positives = 365/597 (61%), Gaps = 23/597 (3%)
Frame = +1
Query: 97 EGMSAEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTD 273
EG EED VVREIDV+F PS ID T+L+VLQYPLRP WRPYELD+ C+ +RVKPAS +
Sbjct: 112 EGNREEEDMVVREIDVFFTPS-IDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGE 170
Query: 274 VEIELPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVR 453
VE++L VDV+S N+D E S + K TLSS W P + T YA+GV G +LHLNP+ AV
Sbjct: 171 VEMDLAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVV 230
Query: 454 QLRPSMDFLNPSASKKKNV----SEVPTK---------ATSSTAESFRNPNKVMDQKDNE 594
QLRPSM L PS SK+KN +EV K A SST ++ R + + D++
Sbjct: 231 QLRPSMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDK 290
Query: 595 PC-IPLEFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXX 771
C +PL++H S + SA+Y +M++ + F M P DY+DSLCP A+ + K
Sbjct: 291 ECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGAS-NNNKAQGPSR 349
Query: 772 XXXXXXXXXXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTA 951
+ +EG P H+FSALKH+APD ED+ V+++ ALLVQGLWV K++
Sbjct: 350 RLLLSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSS 409
Query: 952 IRYP-DAKGHLLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDW 1128
+ +P D L RDYVL FS I + + + + E V K +A ERP +DW
Sbjct: 410 LLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEV-KGFLKILAIERPSFKDW 468
Query: 1129 KFREPTDLMFIKHHPEIVEKYEQMWKAKEEQLLPRIKPKRNPTNANASGKPTPAVAPNPG 1308
K +E D F K +P+IV+ EQ+W+A E+ ++ I R + KP + P
Sbjct: 469 KLKENADEGFKKLYPDIVKNQEQIWRAGEDNVINHI--CRGAKGGPSRTKPGTVIKPEK- 525
Query: 1309 AMNSASG------AGTERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMS 1470
AMNS G A RT+ +E REA+PKAL+K+FQ HKVCS Q I +GLR +AL+ S
Sbjct: 526 AMNSDKGVRRVAPAVQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQS 585
Query: 1471 ALPKNDASVIKAAALCLTAPQEQLLEIISEVVVNIHGA-YVLKVSSEHPELNPLRNVVIG 1647
LPK DA ++ AA AP+ +L E++SEV V +HG +VL+ S EHPE +PLR VVI
Sbjct: 586 TLPKADARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLREVVIN 645
Query: 1648 LFIGKGPNAKVKKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDGKP 1818
L KG K+KK+++ AA + L++E +N+E+ KV+S+FCE S WVLKSGDGKP
Sbjct: 646 LLRVKG---KLKKADVSAAALLSLKREISNNEYNKVMSDFCEYKSSWWVLKSGDGKP 699
>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
gi|550334731|gb|EEE90658.2| hypothetical protein
POPTR_0007s12540g [Populus trichocarpa]
Length = 667
Score = 455 bits (1170), Expect = e-125
Identities = 256/586 (43%), Positives = 353/586 (60%), Gaps = 17/586 (2%)
Frame = +1
Query: 112 EEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVEIEL 288
E+D VVREIDVY+ PS +D T+L+V+QYPLRP WRPYELD+ CK +RVKP ST+VE++L
Sbjct: 107 EDDVVVREIDVYYTPS-VDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDL 165
Query: 289 PVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRPS 468
+D ++ N+DP+ S K TLSS W P T YA+GV G++LHLNP+ AV QLRPS
Sbjct: 166 SID-DTKNYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPS 224
Query: 469 MDFLNPSASK-KKNVSEVPTKATSSTAESFRNPNKVM----DQKDN--EPCIPLEFHDSS 627
MD+L+ SK KKN + + +K M +QK + E IPL++H S
Sbjct: 225 MDYLSSGNSKGKKNATSGEDSNEGKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKYHGSK 284
Query: 628 SHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXXXXXXXX 807
S LS+RY M++ S + F M P DY+ SLCP + + K
Sbjct: 285 SDLSSRYLQNMVAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNGPSRRVLLSLPLEERI 344
Query: 808 XXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYPDAKGH--- 978
+F EG PIH+F+AL+H P+ ED+L V++++ LVQGLWV KT++ +P+ K
Sbjct: 345 KRLFLEGPPIHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKTSLLFPNPKPTEKV 404
Query: 979 --LLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDV-AFERPKCEDWKFREPTD 1149
RDY+L FS + S+L N+ + + +F ++ A ERP +DWKF+E D
Sbjct: 405 KLAARDYILLLFSKSLVVTPSEL----NVPMKPLILKSFLNIFAVERPSFKDWKFKENVD 460
Query: 1150 LMFIKHHPEIVEKYEQMWKAKEEQLLPRIKPKRNPTNANASGKPTPAVAPNPGAMNSASG 1329
+F++ +P+IV K EQ W+ + + + N KP
Sbjct: 461 TLFVELYPDIVRKQEQAWEVMGKNISAAFDRAGKSVSKNVITKP---------------- 504
Query: 1330 AGTERRTIPNEAREALPKALRKLFQAHKVC--SFQTICQGLRSMALNMSALPKNDASVIK 1503
++T+ +E REAL KAL K+ Q HKVC FQ ICQGLR +A++ S LPK D +
Sbjct: 505 ----KKTMTDETREALRKALPKVLQTHKVCRYGFQMICQGLRQLAISQSTLPKADPRIAV 560
Query: 1504 AAALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPL-RNVVIGLFIGKGPNAKV 1680
AAA AP E+L E+ISEV NIHG YVLK S EHP+ +PL R VVIGLF+ +GPNA +
Sbjct: 561 AAASGAEAPPEELQEVISEVATNIHGFYVLKSSPEHPDFDPLSRKVVIGLFLARGPNANI 620
Query: 1681 KKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDGKP 1818
KKSE+ AA+++L++EP+N E+ KV+++ CES GS WVLKSGDGKP
Sbjct: 621 KKSEVQAAARLELKREPSNSEYIKVMTDLCESKGSAWVLKSGDGKP 666
>ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
gi|568824759|ref|XP_006466762.1| PREDICTED: DNA-directed
RNA polymerase III subunit RPC5-like [Citrus sinensis]
gi|557527707|gb|ESR38957.1| hypothetical protein
CICLE_v10025048mg [Citrus clementina]
Length = 690
Score = 454 bits (1168), Expect = e-125
Identities = 266/599 (44%), Positives = 363/599 (60%), Gaps = 21/599 (3%)
Frame = +1
Query: 67 NFNKMHGTPAEGMSAEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK 246
N +++H + +ED +VREIDV+F PS ID ++KL+V+QYPLRP WRPYELD+ C+
Sbjct: 100 NMDELH------LQDDEDMIVREIDVFFTPS-IDADSKLYVMQYPLRPLWRPYELDERCE 152
Query: 247 -IRVKPASTDVEIELPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSE 423
+RVKP++++VE++L +DV+S N+D E S K TLS+ W P Q T YAIGV G++
Sbjct: 153 EVRVKPSTSEVEMDLSIDVDSNNWDSEKASRLSMPKQTLSTTWMPPQATGYAIGVLIGNK 212
Query: 424 LHLNPVFAVRQLRPSMDFLNPSASKKKN--VSEVPTKATSSTAE----SFRNPNKVM--- 576
LHLNP+ AV QLR SM FL SK+KN SE+P K S + S + NK M
Sbjct: 213 LHLNPIHAVVQLRTSMGFLKSGGSKRKNNVASEIPVKLEDSNQDKSVGSSKKQNKRMGSI 272
Query: 577 DQKDNEP--CIPLEFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKT 750
+Q+ NE +PL++H S S SARY +ML SP+ F M P DY+ SLCP A + T
Sbjct: 273 EQRSNEEECWVPLKYHGSKSDFSARYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGSNNT 332
Query: 751 KPVAXXXXXXXXXXXXXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQG 930
K + EG P+ +FS L H+AP+ EDV+ V+ + LLVQG
Sbjct: 333 KSKGPSRRFLLSMPLEERFKKLLCEGEPVQRFSTLMHFAPNDTVEDVIGVLHKNGLLVQG 392
Query: 931 LWVAKTAIRYPDAKGH-LLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFE 1107
LW ++ + + + K L RDYVL FS + +K+ L ++ K A E
Sbjct: 393 LWAPRSPLLFNNDKMKCLARDYVLLSFSKNSVVKFQHLSVSPKLRDHI--KCFLNIFAVE 450
Query: 1108 RPKCEDWKFREPTDLMFIKHHPEIVEKYEQMWKAKEEQLLPRIKP--KRNPTNANASGKP 1281
RP +DWKFR+ TDL FIK HP IV K EQ+W A E+Q+ I K T N +GK
Sbjct: 451 RPDFKDWKFRQQTDLSFIKEHPNIVIKQEQVWAAAEKQITDVINKLGKSGSTLRNDAGK- 509
Query: 1282 TPAVAPNPGAMNSA---SGAGTERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRS 1452
+ V + A+NS+ SGA T + + NE+REALPKAL+KLFQ HKVCS I QGLR
Sbjct: 510 SAMVNKHLKAINSSNGPSGALTGNKNLSNESREALPKALQKLFQIHKVCSLPLIKQGLRD 569
Query: 1453 MALNMSALPKNDASVIKAAALCLTA---PQEQLLEIISEVVVNIHGAYVLKVSSEHPELN 1623
+A++ S LPK DA + AA + + ++ E+IS+V NIHG YV K SSE P+
Sbjct: 570 LAISQSTLPKADARMTVLAAEIVDSSFVDTQEFAEVISQVATNIHGFYVSK-SSEDPQHG 628
Query: 1624 PLRNVVIGLFIGKGPNAKVKKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLK 1800
PLR VV L + GP+AK+KK+++VEAA+ L++E +N E+ KV+S+ CES GS W+LK
Sbjct: 629 PLRKVVTDLLLAGGPDAKLKKADVVEAARHVLKREISNAEYSKVMSDICESKGSAWILK 687
>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC5-like [Cucumis sativus]
Length = 702
Score = 449 bits (1155), Expect = e-123
Identities = 249/589 (42%), Positives = 350/589 (59%), Gaps = 21/589 (3%)
Frame = +1
Query: 109 AEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKEC-KIRVKPASTDVEIE 285
A ED VVREIDV F PS +D +KL+VLQYPLRP WRPYE + C ++RVKP++ +VE++
Sbjct: 115 ASEDMVVREIDVLFTPS-VDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVD 173
Query: 286 LPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRP 465
L VD+ES N+D +A + K TL+S W+P T+YA+G+ G++LHLNPV AV QLRP
Sbjct: 174 LNVDIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRP 233
Query: 466 SMDFLNPSASKKKNVS------------EVPTKATSSTAESFRNPNKVMDQKDNEPCIPL 609
S + LN K+KN +V + S + P+ + +D E IPL
Sbjct: 234 SFEHLNSGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPL 293
Query: 610 EFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXX 789
+++ S LS R+ M+S SP+ F M P DY+DSLCP + KP
Sbjct: 294 KYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSL 353
Query: 790 XXXXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYP-D 966
+ TEG P+ +FSALKHYAPD+ E+ + ++Q+A LVQGLWV K+ P D
Sbjct: 354 SLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQD 413
Query: 967 AKGHLLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDWKFREPT 1146
G RD+VL FS + S + ++++ K ERP +DWKF+E T
Sbjct: 414 GSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRV--KHFLNLFGVERPAFKDWKFKEKT 471
Query: 1147 DLMFIKHHPEIVEKYEQMWKAKEEQLLPRIKPKRNPTNANAS-GKP------TPAVAPNP 1305
D +F+ +H I EK E++W E+ ++ ++ +ANA+ GKP V+ +
Sbjct: 472 DRLFLSNHVRIAEKQEELWNNVEKGFT-FLRSIKSVHHANAATGKPGVVPKLEKQVSSDQ 530
Query: 1306 GAMNSASGAGTERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPKN 1485
S++ + + +E REALPKAL+KLFQ HKVCSFQ ICQGLR +A++ S LPK
Sbjct: 531 TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKA 590
Query: 1486 DASVIKAAALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGKG 1665
DA + AAA + AP ++L +IIS+V IHG YVL S EHPE +PLR VVI L G+G
Sbjct: 591 DARMAVAAAYGVDAPPDELXKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRG 650
Query: 1666 PNAKVKKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDG 1812
P A +KK++++EA+K +L + ++E+ KV++E C S GS W LKSGDG
Sbjct: 651 PKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDG 699
>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
sativus]
Length = 702
Score = 449 bits (1154), Expect = e-123
Identities = 249/589 (42%), Positives = 350/589 (59%), Gaps = 21/589 (3%)
Frame = +1
Query: 109 AEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKEC-KIRVKPASTDVEIE 285
A ED VVREIDV F PS +D +KL+VLQYPLRP WRPYE + C ++RVKP++ +VE++
Sbjct: 115 ASEDMVVREIDVLFTPS-VDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVD 173
Query: 286 LPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRP 465
L VD+ES N+D +A + K TL+S W+P T+YA+G+ G++LHLNPV AV QLRP
Sbjct: 174 LNVDIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRP 233
Query: 466 SMDFLNPSASKKKNVS------------EVPTKATSSTAESFRNPNKVMDQKDNEPCIPL 609
S + LN K+KN +V + S + P+ + +D E IPL
Sbjct: 234 SFEHLNSGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPL 293
Query: 610 EFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXX 789
+++ S LS R+ M+S SP+ F M P DY+DSLCP + KP
Sbjct: 294 KYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSL 353
Query: 790 XXXXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYP-D 966
+ TEG P+ +FSALKHYAPD+ E+ + ++Q+A LVQGLWV K+ P D
Sbjct: 354 SLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQD 413
Query: 967 AKGHLLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDWKFREPT 1146
G RD+VL FS + S + ++++ K ERP +DWKF+E T
Sbjct: 414 GSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRV--KHFLNLFGVERPAFKDWKFKEKT 471
Query: 1147 DLMFIKHHPEIVEKYEQMWKAKEEQLLPRIKPKRNPTNANAS-GKP------TPAVAPNP 1305
D +F+ +H I EK E++W E+ ++ ++ +ANA+ GKP V+ +
Sbjct: 472 DRLFLSNHVRIAEKQEELWNNVEKGFT-FLRSIKSVHHANAATGKPGVVPKLEKQVSSDQ 530
Query: 1306 GAMNSASGAGTERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPKN 1485
S++ + + +E REALPKAL+KLFQ HKVCSFQ ICQGLR +A++ S LPK
Sbjct: 531 TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKA 590
Query: 1486 DASVIKAAALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGKG 1665
DA + AAA + AP ++L +IIS+V IHG YVL S EHPE +PLR VVI L G+G
Sbjct: 591 DARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRG 650
Query: 1666 PNAKVKKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDG 1812
P A +KK++++EA+K +L + ++E+ KV++E C S GS W LKSGDG
Sbjct: 651 PKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDG 699
>gb|EOX91150.1| Transcription regulators,zinc ion binding, putative isoform 3
[Theobroma cacao]
Length = 736
Score = 446 bits (1147), Expect = e-122
Identities = 270/633 (42%), Positives = 365/633 (57%), Gaps = 59/633 (9%)
Frame = +1
Query: 97 EGMSAEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTD 273
EG EED VVREIDV+F PS ID T+L+VLQYPLRP WRPYELD+ C+ +RVKPAS +
Sbjct: 112 EGNREEEDMVVREIDVFFTPS-IDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGE 170
Query: 274 VEIELPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVR 453
VE++L VDV+S N+D E S + K TLSS W P + T YA+GV G +LHLNP+ AV
Sbjct: 171 VEMDLAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVV 230
Query: 454 QLRPSMDFLNPSASKKKNV----SEVPTK---------ATSSTAESFRNPNKVMDQKDNE 594
QLRPSM L PS SK+KN +EV K A SST ++ R + + D++
Sbjct: 231 QLRPSMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDK 290
Query: 595 PC-IPLEFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXX 771
C +PL++H S + SA+Y +M++ + F M P DY+DSLCP A+ + K
Sbjct: 291 ECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGAS-NNNKAQGPSR 349
Query: 772 XXXXXXXXXXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTA 951
+ +EG P H+FSALKH+APD ED+ V+++ ALLVQGLWV K++
Sbjct: 350 RLLLSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSS 409
Query: 952 IRYP-DAKGHLLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDW 1128
+ +P D L RDYVL FS I + + + + E V K +A ERP +DW
Sbjct: 410 LLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEV-KGFLKILAIERPSFKDW 468
Query: 1129 KFREPTDLMFIKHHPEIVEKYEQMWKAKEEQLLPRIKPKRNPTNANASGKPTPAVAPNPG 1308
K +E D F K +P+IV+ EQ+W+A E+ ++ I R + KP + P
Sbjct: 469 KLKENADEGFKKLYPDIVKNQEQIWRAGEDNVINHI--CRGAKGGPSRTKPGTVIKPEK- 525
Query: 1309 AMNSASG------AGTERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMS 1470
AMNS G A RT+ +E REA+PKAL+K+FQ HKVCS Q I +GLR +AL+ S
Sbjct: 526 AMNSDKGVRRVAPAVQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQS 585
Query: 1471 ALPKNDASVIKAAALCLTAPQEQLLEIISEVVVNIHGA-YVLKVSSEHPELNPL------ 1629
LPK DA ++ AA AP+ +L E++SEV V +HG +VL+ S EHPE +PL
Sbjct: 586 TLPKADARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLRLHKYV 645
Query: 1630 ------------------------------RNVVIGLFIGKGPNAKVKKSEIVEAAKMQL 1719
R VVI L KG K+KK+++ AA + L
Sbjct: 646 QLVFKWEEMFMVSMFFLQNPSFSSELFFPCREVVINLLRVKG---KLKKADVSAAALLSL 702
Query: 1720 QKEPTNDEFRKVVSEFCESSGSVWVLKSGDGKP 1818
++E +N+E+ KV+S+FCE S WVLKSGDGKP
Sbjct: 703 KREISNNEYNKVMSDFCEYKSSWWVLKSGDGKP 735
>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 677
Score = 441 bits (1133), Expect = e-121
Identities = 249/558 (44%), Positives = 341/558 (61%), Gaps = 10/558 (1%)
Frame = +1
Query: 112 EEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVEIEL 288
EED +VREIDV+F PS ID T+L+V+QYPLRP WRPYELD+ C+ +RVKP ST+VE++L
Sbjct: 113 EEDMIVREIDVFFTPS-IDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDL 171
Query: 289 PVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRPS 468
+D +S N+DP S F K TLS+ + P + T YA+GV G++LHLNP+ AV QLRPS
Sbjct: 172 TID-DSSNWDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPS 230
Query: 469 MDFLNPSASKKKNVSEVPTKATSSTAESFRNPNKVMDQKDNEPCIPLEFHDSSSHLSARY 648
++ +N + SK+KN + + + + N K + + I L++H S S S+RY
Sbjct: 231 LEHVNSNDSKRKNSATLNPEVKLEDS----NEGKPIGSSKKQCWISLKYHGSKSDFSSRY 286
Query: 649 RAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXXXXXXXXXXVFTEG 828
KM++ SP+ F M P DY+ SLCP A+ +KTK + EG
Sbjct: 287 LEKMIAQESSPMEFTMTPYDYMSSLCPVASNEKTKSKGPPRRFLLSLPLAERLKKLILEG 346
Query: 829 APIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYPDAKGHL-LRDYVLCR 1005
P+ +FS LKH+APD EDVL+V++++ LVQGLW K+++ +PDA +RDYVL
Sbjct: 347 PPVQRFSVLKHFAPDDSVEDVLKVLQEYGQLVQGLWAPKSSLLFPDANSKQGIRDYVLLL 406
Query: 1006 FSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDWKFREPTDLMFIKHHPEIVE 1185
FS I S + + IK E K A ERP +DWKF+E TD FIK +P+IV+
Sbjct: 407 FSKNLVINSSQVNFPVKIKEEI--KSFLNLFAVERPSFKDWKFKEHTDTTFIKLYPDIVK 464
Query: 1186 KYEQMWKAKEEQLLPRIKPKRNPTNANASGKPTPAVAPNPGAMNS-------ASGAGT-E 1341
K E+ W E++L + NA KP P V ++S ASG
Sbjct: 465 KQEEAWDNTEKRLSKVFDRSGKASMKNAIPKP-PMVHNTVKHLDSEKSMPKIASGMRRLT 523
Query: 1342 RRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPKNDASVIKAAALCL 1521
+ TI E REAL KAL K+FQ+HKVCSFQ ICQGLR +A++ S LPK D + AAA
Sbjct: 524 KTTITVETREALLKALPKVFQSHKVCSFQLICQGLRDLAVSQSTLPKADPRIAVAAASGA 583
Query: 1522 TAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGKGPNAKVKKSEIVE 1701
AP E+L EIIS+V NIHG YVLK S EHP+ + LR V+I L + +GPNAK+KK+E+ E
Sbjct: 584 DAPPEELQEIISQVATNIHGFYVLKSSPEHPQYDELRKVIIDLLLARGPNAKLKKAEVFE 643
Query: 1702 AAKMQLQKEPTNDEFRKV 1755
AA++ +++ TN E+ K+
Sbjct: 644 AARLAFKRDVTNIEYNKL 661
>gb|EOX91149.1| Transcription regulators,zinc ion binding, putative isoform 2
[Theobroma cacao]
Length = 588
Score = 431 bits (1107), Expect = e-118
Identities = 254/577 (44%), Positives = 348/577 (60%), Gaps = 23/577 (3%)
Frame = +1
Query: 97 EGMSAEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTD 273
EG EED VVREIDV+F PS ID T+L+VLQYPLRP WRPYELD+ C+ +RVKPAS +
Sbjct: 15 EGNREEEDMVVREIDVFFTPS-IDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGE 73
Query: 274 VEIELPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVR 453
VE++L VDV+S N+D E S + K TLSS W P + T YA+GV G +LHLNP+ AV
Sbjct: 74 VEMDLAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVV 133
Query: 454 QLRPSMDFLNPSASKKKNV----SEVPTK---------ATSSTAESFRNPNKVMDQKDNE 594
QLRPSM L PS SK+KN +EV K A SST ++ R + + D++
Sbjct: 134 QLRPSMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDK 193
Query: 595 PC-IPLEFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXX 771
C +PL++H S + SA+Y +M++ + F M P DY+DSLCP A+ + K
Sbjct: 194 ECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPGAS-NNNKAQGPSR 252
Query: 772 XXXXXXXXXXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTA 951
+ +EG P H+FSALKH+APD ED+ V+++ ALLVQGLWV K++
Sbjct: 253 RLLLSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSS 312
Query: 952 IRYP-DAKGHLLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDW 1128
+ +P D L RDYVL FS I + + + + E V K +A ERP +DW
Sbjct: 313 LLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEV-KGFLKILAIERPSFKDW 371
Query: 1129 KFREPTDLMFIKHHPEIVEKYEQMWKAKEEQLLPRIKPKRNPTNANASGKPTPAVAPNPG 1308
K +E D F K +P+IV+ EQ+W+A E+ ++ I R + KP + P
Sbjct: 372 KLKENADEGFKKLYPDIVKNQEQIWRAGEDNVINHI--CRGAKGGPSRTKPGTVIKPEK- 428
Query: 1309 AMNSASG------AGTERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMS 1470
AMNS G A RT+ +E REA+PKAL+K+FQ HKVCS Q I +GLR +AL+ S
Sbjct: 429 AMNSDKGVRRVAPAVQAGRTMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQS 488
Query: 1471 ALPKNDASVIKAAALCLTAPQEQLLEIISEVVVNIHGA-YVLKVSSEHPELNPLRNVVIG 1647
LPK DA ++ AA AP+ +L E++SEV V +HG +VL+ S EHPE +PLR VVI
Sbjct: 489 TLPKADARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLREVVIN 548
Query: 1648 LFIGKGPNAKVKKSEIVEAAKMQLQKEPTNDEFRKVV 1758
L KG K+KK+++ AA + L++E +N+E+ K +
Sbjct: 549 LLRVKG---KLKKADVSAAALLSLKREISNNEYNKAL 582
>ref|XP_006395054.1| hypothetical protein EUTSA_v10003751mg [Eutrema salsugineum]
gi|557091693|gb|ESQ32340.1| hypothetical protein
EUTSA_v10003751mg [Eutrema salsugineum]
Length = 682
Score = 414 bits (1065), Expect = e-113
Identities = 234/586 (39%), Positives = 346/586 (59%), Gaps = 18/586 (3%)
Frame = +1
Query: 97 EGMSAEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTD 273
E + EEDFVVREIDV+FNPS ID TKL+VLQYPLRP+WRPYE+D+ C+ +RV P+++
Sbjct: 105 EKVEEEEDFVVREIDVFFNPS-IDANTKLYVLQYPLRPSWRPYEMDERCEAVRVNPSTSQ 163
Query: 274 VEIELPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVR 453
VEI+L +DV S N+D + S K TL++ W+ YA+GV +G +LHLNPV AV
Sbjct: 164 VEIDLSMDVHSRNYDSKFGSELHMTKQTLTTTWKQPPTLDYAVGVLSGDKLHLNPVHAVA 223
Query: 454 QLRPSMDFLNPSASKKKNVSEVPTKATSSTAESFRNPNKVMDQKDNEPCIP------LEF 615
QLRPSM++L+ SKKK+ +AT + + + NK + ++ IP L++
Sbjct: 224 QLRPSMEYLS---SKKKHA-----EATGESVGTSKRQNKGVQASTDQKPIPEENWVALKY 275
Query: 616 HDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXXXX 795
H S +RY M++ S + F M P Y++SLC + ++
Sbjct: 276 HGLQSEFCSRYLNGMMANGNSSIDFNMSPDVYINSLCRGESSRNSESRDSSKRVLTSLPL 335
Query: 796 XXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYPDAKG 975
+ +G P+ ++S LKHYAP+ + D L+V++ +A LVQGLW KT + D
Sbjct: 336 EERVQKLLCQGPPLFRYSVLKHYAPEFSDNDFLKVLQDYAWLVQGLWTPKTRLLQLDGPQ 395
Query: 976 HLLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDWKFREPTDLM 1155
RDYVL FS G+TI YS++ +K + + A ERP DWKF+EP D+
Sbjct: 396 EASRDYVLMLFSKGSTITYSEVAATGRLKEKITSMLT--KFAKERPLLCDWKFKEPADVS 453
Query: 1156 FIKHHPEIVEKYEQMWKAKEEQLLPRIKPK--------RNPTNANASGKPTPAVAPNPGA 1311
FIK + EI K E WKA +E+L P+I RN N SG P +
Sbjct: 454 FIKSYKEIANKQEIFWKALDEKLTPKITQGGKSRADNLRNGVGKNPSGTVKPEIPTTLSD 513
Query: 1312 MNSASGAGTER---RTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPK 1482
+S R + + + R A+ KAL+K+FQ+HKVCS++TICQ LR +A++ S PK
Sbjct: 514 KGGSSRNAIHRFVGQKMSEDIRRAILKALKKVFQSHKVCSYETICQRLRDLAVSTSNNPK 573
Query: 1483 NDASVIKAAALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGK 1662
D+ + + AL + A +E+L +IISEV V+IHG++V K+S +HPE +PLR+VVI L +G
Sbjct: 574 ADSGMAQQVALAVDAHKEELQQIISEVTVDIHGSFVYKLSPDHPEHDPLRSVVIDLLLGN 633
Query: 1663 GPNAKVKKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLK 1800
P AK+ ++++ A + L+++ T++E++KV+ + CESS S WVL+
Sbjct: 634 SPGAKLMRADVFVAGETVLRRKITSNEYQKVMHDLCESSSSGWVLQ 679
>gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Morus notabilis]
Length = 732
Score = 410 bits (1054), Expect = e-111
Identities = 237/574 (41%), Positives = 332/574 (57%), Gaps = 24/574 (4%)
Frame = +1
Query: 103 MSAEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVE 279
+ AEED VVREIDV+FNP ID+ T+L+VLQYPLRP+WRPYELD+ C+ +RVKPAS++VE
Sbjct: 103 VEAEEDMVVREIDVFFNPK-IDEGTQLYVLQYPLRPSWRPYELDERCEEVRVKPASSEVE 161
Query: 280 IELPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQL 459
++L +DV+S N+DP+ K TL W + T YA+GV G++LHLN + AV QL
Sbjct: 162 MDLSLDVDSKNYDPDCGDRLNMTKQTLCCSWDQPRATRYAVGVLMGNKLHLNRIHAVMQL 221
Query: 460 RPSMDFLNPSASKKKNVSEVPT------------KATSSTAESFRNPNKVMDQK--DNEP 597
RPS+ L + SKKKN +V KA S+ + + N + QK D E
Sbjct: 222 RPSLKHLISAGSKKKNNVKVDAEDTVKLEESSGKKAIGSSKKQIKQENSSVKQKIADEEG 281
Query: 598 CIPLEFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXX 777
+PL++H S S S RY KM SPL F M P DYL+SLCP + + +P
Sbjct: 282 WVPLKYHGSESESSVRYLRKMAVQESSPLQFTMSPYDYLNSLCPGSCKNGNEPKGPSRRA 341
Query: 778 XXXXXXXXXXXXVFTEG-APIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAI 954
+ EG AP+H+FS LKH+APD +++L ++ ALLVQGLW K+++
Sbjct: 342 LLSLPLEERIKSLLCEGLAPVHRFSVLKHFAPDCTTKEILDALQNHALLVQGLWAPKSSL 401
Query: 955 RYPDAK----GHLLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCE 1122
+K + RDYVL F +S L + ++K T + ERP +
Sbjct: 402 LLGTSKETGAQRIARDYVLLLFWKNPVFSFSSLHFPSSLK--TAVNKFLNILGVERPSVK 459
Query: 1123 DWKFREPTDLMFIKHHPEIVEKYEQMWKAKEEQLLPRI---KPKRNPTNANASGKPTPAV 1293
DWKF+ TD+ FIK++P++V+K E++W E ++ K R P N + +P +
Sbjct: 460 DWKFKGQTDISFIKNYPDVVKKQEEVWGDLERDIMNMFGDGKSGRGPKNTSIPSRPVKPL 519
Query: 1294 APNPGAMNSASGAGTERRTIPNEAREAL-PKALRKLFQAHKVCSFQTICQGLRSMALNMS 1470
N G S + IP++ RE L K L K+ Q HKVCS Q +CQGLR +ALN
Sbjct: 520 NSNKGVPKGTSEV-VGGKKIPDDIREVLCSKILPKVIQEHKVCSLQLMCQGLRELALNKL 578
Query: 1471 ALPKNDASVIKAAALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGL 1650
LPK D +AAA C TA +L++++ E +NIHG YVLK S+EHP+ +P RNVVI L
Sbjct: 579 NLPKADDRFARAAA-CGTASPGELVKLLDETAINIHGLYVLKSSAEHPQYDPFRNVVIDL 637
Query: 1651 FIGKGPNAKVKKSEIVEAAKMQLQKEPTNDEFRK 1752
G AK+KK+EI +AAK L+++ T++E+ K
Sbjct: 638 LRQNGLAAKLKKAEIFDAAKNALKRDVTSNEYSK 671
>ref|XP_006590438.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Glycine
max]
Length = 697
Score = 404 bits (1037), Expect = e-109
Identities = 233/597 (39%), Positives = 352/597 (58%), Gaps = 30/597 (5%)
Frame = +1
Query: 112 EEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVEIEL 288
EED VVREIDV+F+PS +D +T+L+V QYPLRP+WRPY+LD++C+ +R+K +++VEI+L
Sbjct: 106 EEDTVVREIDVFFSPS-VDAQTQLYVFQYPLRPSWRPYDLDEQCEEVRLKTKTSEVEIDL 164
Query: 289 PVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRPS 468
+D++S + D E + K TLS+ W+P A+G+ G +LHL+PV AV QLRP+
Sbjct: 165 SIDLDSDHIDKEFATKYNITKQTLSTTWKPSHANGCAVGLLMGDKLHLHPVHAVVQLRPT 224
Query: 469 MDFLNPSASKKKNVS--------------EVPTKATSSTAESFRNPNKVMDQKDNEPC-I 603
+ LN SK+KN + E + ATS P+ + + D + C +
Sbjct: 225 LQHLNSGGSKRKNAASTGANATVKIEGSNEEKSVATSKKQNKQTGPSIIEQKSDGDECWV 284
Query: 604 PLEFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXX 783
PL++H S +S+RY +M++ SP+ F M+ DY+ +LCP + +
Sbjct: 285 PLKYHSCKSDISSRYLQQMVTQESSPINFTMRAYDYVTALCPGGSSNNLPKGLSKRYLLS 344
Query: 784 XXXXXXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYP 963
+ E P+H+FSA+KH+AP++ E ++L ++Q A+LV GLW AK+++ YP
Sbjct: 345 LPVEERLKKML--EDRPLHRFSAIKHFAPEYSENELLGFLQQHAILVWGLWTAKSSLLYP 402
Query: 964 DAKGHLL-RDYVLCRFSHGTTIKYSDL-----EWIRNIKS-ETVWKVAFGDVAFERPKCE 1122
D L RDY L FS +++SD+ E + +++ ++ V D+ K
Sbjct: 403 DGGVETLARDYSLLLFSKSLKVQFSDVSIRGGELVNRVRNCLKIFGVERNDLDKSTGKPN 462
Query: 1123 D-WKFREPTDLMFIKHHPEIVEKYEQMWKAKEEQLL---PRIKPKRNPTNANASGKPTPA 1290
WKFRE D F K +P+IVEK E+++K E+QL + ++ NA A+
Sbjct: 463 PYWKFRELPDESFKKLYPDIVEKQEELFKGLEKQLSGFSSNVGKRKIGKNAVANQGVNTE 522
Query: 1291 VAPNPGAMNSASGAGT---ERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMAL 1461
V + + + G + T+ NE R ALP AL+KLFQ HKVCSF+ IC+GLR MA+
Sbjct: 523 VHKSESSDQRVTSLGRVPPAKMTMSNETRHALPIALKKLFQTHKVCSFKLICEGLREMAV 582
Query: 1462 NMSALPKNDASVIKAAALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVV 1641
+ + L K D+ + AA L P +L+ +ISEV I+G+YVLK S + +P R+VV
Sbjct: 583 SKAMLSKGDSKMAVDAAHSLDGPHNELMAVISEVACEINGSYVLKSSPD----DPFRDVV 638
Query: 1642 IGLFIGKGPNAKVKKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDG 1812
I + G GPNAK+KK+EI+EAA+ +L +E ++E+ KV+SE C S GSVWVLKSGDG
Sbjct: 639 IDMLCGSGPNAKLKKAEILEAARRKLGREVASNEYTKVMSELCVSKGSVWVLKSGDG 695
>ref|XP_004300617.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
[Fragaria vesca subsp. vesca]
Length = 685
Score = 403 bits (1036), Expect = e-109
Identities = 238/589 (40%), Positives = 341/589 (57%), Gaps = 21/589 (3%)
Frame = +1
Query: 115 EDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVEIELP 291
ED VVREIDV+FNP+ +D T+L+VLQYPLRP WRPYEL+ C+ IRVKP + +VE++L
Sbjct: 106 EDTVVREIDVFFNPN-VDSNTQLYVLQYPLRPRWRPYELEDRCEEIRVKPGTAEVEVDLS 164
Query: 292 VDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRPSM 471
+D+ S N D E + + K TL+++W P + T YA+GV G++LHLNPV AV QLRPS+
Sbjct: 165 IDLYSKNCDQEFANRLKMTKQTLATEWDPCRSTGYAVGVLMGNKLHLNPVHAVVQLRPSL 224
Query: 472 DFLNPSASKKKNV----SEVPTKATSSTAESFRNPNKVMDQ--KDNEPCIPLEFHDSSSH 633
D L P SK+K +EV K + + NK ++ +D E +PL++H S S
Sbjct: 225 DHLKPGGSKRKGTATGDAEVAVKREEKSLAPSKKQNKRVESSTEDEESWVPLQYHGSESD 284
Query: 634 LSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXXXXXXXXXX 813
SA Y +M+ SPL F M P DY++SLCP+ +K
Sbjct: 285 FSAGYLKRMVVQDSSPLEFTMTPYDYVNSLCPRTCKGSSK------RALLNLPLEERIQK 338
Query: 814 VFTEGAPIHKFSAL-KHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYPDAKG----- 975
+ E +FS L K+YAP + E+++L V+++ LL++GLWV KTA+ YP +G
Sbjct: 339 LLVEEPIARRFSDLKKYYAPRNQEKELLDVLQKNGLLLRGLWVPKTALLYPKKEGSSRKK 398
Query: 976 -----HLLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDWKFRE 1140
R+++L F I YS+L +K + F +A RP DWK +E
Sbjct: 399 DDDNLRTARNHILNSFQKNPVISYSELNVYPPLKPHFDETLKF--LAVYRPSTRDWKLKE 456
Query: 1141 PTDLMFIKHHPEIVEKYEQMWKAKEEQLLPRIKPKRNPTNANASGKPTPAVAPNPGAMNS 1320
+D+ F + HP+I E EQ+W+ ++QL+ +KP R+ NA+ S K + G S
Sbjct: 457 QSDVSFAELHPDISESQEQIWERMDKQLVEALKPHRDLKNASMSSKTGKLPNSDKGPNKS 516
Query: 1321 ASGAGTER-RTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPKNDASV 1497
ASGA + RT+ +E LP+A++++F+ KVCSFQ IC L +M L S K D +
Sbjct: 517 ASGAPSGGVRTMSDETLAVLPQAIKEVFKTRKVCSFQLICDTLGNMTLERSQHAKVDPNS 576
Query: 1498 IKAAAL--CLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGKGPN 1671
K A+ L AP E+L +I++ V I G YVLK SSEHPE + LR+VVI L GK
Sbjct: 577 RKLTAVRNGLAAPPEELKNVITQFAVEIGGVYVLKSSSEHPEHDQLRDVVIKLLQGKN-K 635
Query: 1672 AKVKKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDGKP 1818
+KK ++ AA+ +L +E +N+E+ KV++E C S GS W LKSGDG P
Sbjct: 636 GPIKKLDVTVAAQEELGREISNNEYNKVMNELCVSKGSQWYLKSGDGSP 684
>gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus persica]
Length = 698
Score = 401 bits (1030), Expect = e-109
Identities = 233/601 (38%), Positives = 347/601 (57%), Gaps = 32/601 (5%)
Frame = +1
Query: 115 EDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVEIELP 291
ED +VREIDV+FNP ID ++L+VLQYPLRP WRPYEL+ C+ +R+KPA++++EI+L
Sbjct: 107 EDTIVREIDVFFNPH-IDDNSQLYVLQYPLRPWWRPYELENRCEEVRLKPATSEMEIDLS 165
Query: 292 VDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTA--YAIGVFTGSELHLNPVFAVRQLRP 465
++++ N+D + + + K TL + W+P + T YA+GV G +LHLNP+ V QLRP
Sbjct: 166 LNLDPKNYDEDCGNRLKMTKQTLYTTWKPTRTTGTGYAVGVLMGDKLHLNPIDKVVQLRP 225
Query: 466 SMDFLNPSASKKKNV----SEVPTKATSSTAESFRNPNKVMDQK----------DNEPCI 603
S++ L +S++KN +EV K S E+ P+K ++ D E +
Sbjct: 226 SLEHLKSGSSRRKNSVTGDAEVKVKLEESRQETSSGPSKKQTKRMESSTEKKTEDEESWV 285
Query: 604 PLEFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXX 783
PL++H S S SA+Y +M+ SP+ F M P DY++SLCP+ ++
Sbjct: 286 PLQYHSSESDFSAKYLRRMVGQESSPIQFTMSPYDYVNSLCPRTCKGSSR------RFLL 339
Query: 784 XXXXXXXXXXVFTEGAPIHKFSALKHY-APDHPEEDVLRVVEQFA--LLVQGLWVAKTAI 954
+ E +FS LK Y APDH E++L V+++ A LL GLWV KT +
Sbjct: 340 SLPLEERIKKLLVEEPLARRFSDLKKYFAPDHTGEELLDVLQKHAQLLLDSGLWVPKTLL 399
Query: 955 RYPDA----KGHLLR----DYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFER 1110
YP + H+ R +YVL F T I S L +N K+ + +A R
Sbjct: 400 LYPSKDMKDRDHVARQTARNYVLNLFRKNTVISNSQLNLPQNHKNHAYESLKI--LAVSR 457
Query: 1111 PKCEDWKFREPTDLMFIKHHPEIVEKYEQMWKAKEEQLLPRIKPK--RNPTNANASGKPT 1284
P +DWK +E +D F + +P+I + EQ W+ EE+L+ K R NA + KP
Sbjct: 458 PSSQDWKLKEQSDKSFKELYPDIFKSQEQNWERMEEKLVNAFKAHTDRGVKNACMTSKPG 517
Query: 1285 PAVAPNPGAMNSASGAGTERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALN 1464
++ + G SAS RT+ +E R ALP+A++++ HKVC+F+ IC+GLR +A+
Sbjct: 518 KSLNSDKGTTKSASDVQIGGRTMSDETRAALPEAIKEVLHEHKVCNFRLICEGLRRLAVR 577
Query: 1465 MSALPKNDASVIKA--AALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNV 1638
S+LPK D + AA + APQ +L ++I +V +IHG YVLK S EH E + LR V
Sbjct: 578 KSSLPKVDPKTKRVIDAAYGVDAPQHELQKVICQVAADIHGLYVLKSSPEHSEHDRLRKV 637
Query: 1639 VIGLFIGKGPNAKVKKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDGKP 1818
VI L KGPNAK+K+ E+ EAAK+ L+++ +E+ KV+++FC GS W+LKSGDG P
Sbjct: 638 VIDLLCTKGPNAKLKRGEVFEAAKIALERDINTNEYNKVMNDFCVFKGSAWILKSGDGGP 697
Query: 1819 D 1821
+
Sbjct: 698 N 698
>ref|XP_002863995.1| hypothetical protein ARALYDRAFT_495012 [Arabidopsis lyrata subsp.
lyrata] gi|297309830|gb|EFH40254.1| hypothetical protein
ARALYDRAFT_495012 [Arabidopsis lyrata subsp. lyrata]
Length = 676
Score = 400 bits (1027), Expect = e-108
Identities = 228/577 (39%), Positives = 330/577 (57%), Gaps = 14/577 (2%)
Frame = +1
Query: 112 EEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVEIEL 288
EED VVREIDV+FNPS D TKL+VLQYPLRP+WRPYE+D+ C+ +RV +++ VEI+L
Sbjct: 102 EEDVVVREIDVFFNPS-FDANTKLYVLQYPLRPSWRPYEMDERCEEVRVNTSTSQVEIDL 160
Query: 289 PVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRPS 468
+DV S N+D K TL + W+ YA+GV +G +LHLNPV AV QLRPS
Sbjct: 161 SMDVHSKNYDSNF--GLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPS 218
Query: 469 MDFLNPSASKKKNVSEVPTKATSSTAESFRNPNKVMDQK--DNEPCIPLEFHDSSSHLSA 642
M +L+ + KK+ S + TS + DQK + E + L++H S +
Sbjct: 219 MQYLSSNGKKKQEESTEESVGTSKKQN--KGVQASTDQKPINEETWVALKYHGLQSEYCS 276
Query: 643 RYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXXXXXXXXXXVFT 822
Y M++ S L F M P Y++ LC + ++ +
Sbjct: 277 TYLNGMMANGNSSLDFNMSPDVYINELCRGGSSRNSELKETSKRVLLSLPLEERVKKLLC 336
Query: 823 EGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYPDAKGHLLRDYVLC 1002
EG+P+ +++ LKHYAP+ +ED L +++ LVQGLW KT + D +R+YVL
Sbjct: 337 EGSPLLRYNVLKHYAPEFSDEDFLGALQEDGWLVQGLWTPKTKLLGLDENCRSIREYVLS 396
Query: 1003 RFSHGTTIKYSDLEWIRNIKSETV-WKVAFGDVAFERPKCEDWKFREPTDLMFIKHHPEI 1179
FS TTIKYS++E + + + K + A ERP DWKF+EPTD+ FIK +PEI
Sbjct: 397 LFSQNTTIKYSEVEATGFQREKMIIMKSMLTEFAKERPLLNDWKFKEPTDVSFIKSYPEI 456
Query: 1180 VEKYEQMWKAKEE--QLLPRIKPKRNPTNANASGKPTPAVAPNPGAMNSASGAGTERRTI 1353
V++ + +W +++ + + + R N GK + + G+ R TI
Sbjct: 457 VKEQDILWTNRKKIIESILTTRKSRADNRRNVVGKNSSVTVKPEVPTTLSDKGGSSRNTI 516
Query: 1354 PN--------EAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPKNDASVIKAA 1509
P E R ALPKAL+K+FQ HKVC ++TICQGLR +A++ S PK D+ +
Sbjct: 517 PRVVGQKMPEELRWALPKALKKVFQTHKVCRYETICQGLRDLAVSTSNNPKADSGMAVNV 576
Query: 1510 ALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGKGPNAKVKKS 1689
AL + A Q++L ++ISEV NIHG+YV S +HPE + LR VVI LF G GP AK+ K+
Sbjct: 577 ALAVDAYQDELKDVISEVAANIHGSYVSISSPDHPEYDSLRGVVISLFCGTGPGAKLMKA 636
Query: 1690 EIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLK 1800
E+ A + +L +E TN+E+ KV+ + CE++ S WVL+
Sbjct: 637 EVFAAGRNELNREITNNEYIKVMHDLCETNSSGWVLQ 673
>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
gi|358344405|ref|XP_003636280.1| DNA-directed RNA
polymerase III subunit RPC5 [Medicago truncatula]
gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
III subunit RPC5 [Medicago truncatula]
gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
III subunit RPC5 [Medicago truncatula]
Length = 683
Score = 398 bits (1022), Expect = e-108
Identities = 230/583 (39%), Positives = 345/583 (59%), Gaps = 16/583 (2%)
Frame = +1
Query: 112 EEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVEIEL 288
EED VVREIDVYF+PS ID +TKL+V+QYPLRP+WRPY+LD++C+ +R+KP +++VE++L
Sbjct: 104 EEDTVVREIDVYFSPS-IDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
Query: 289 PVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRPS 468
+D+ES N + ++ K TLS+ W+P A+G+ G +LHL+P+ AV QLRPS
Sbjct: 163 SIDLESYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQLRPS 222
Query: 469 MDFLNPSASKKKNV--SEVPTKATSSTAESFRNPNKVMDQK-DNEPC-IPLEFHDSSSHL 636
+L+ S+KKNV S K T+ + E + ++QK D+ C +PLE+H S +
Sbjct: 223 RHYLDSGGSEKKNVATSNNQNKQTTPSMEQKSDGAPSIEQKSDSNQCWVPLEYHGCKSDI 282
Query: 637 SARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXXXXXXXXXXV 816
S+RY +M++ SP+ F M DY+ +LCP + T +
Sbjct: 283 SSRYFQQMVTHESSPINFEMSTYDYIATLCPGVS-SNTLAKGPSKRYLLSLPVEKRLQTL 341
Query: 817 FTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYPDAK-GHLLRDY 993
EG P+H+FSA+KH+AP+ ++++L V+E+ A L++G WV ++++ +P L R+Y
Sbjct: 342 LIEGPPLHRFSAIKHFAPECSDDELLSVLEKQAQLLRGYWVPRSSLLFPTGGIESLARNY 401
Query: 994 VLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFER----PKCEDWKFREPTDLMFI 1161
+L RF T+K +L + + K A E+ K WKF+E D FI
Sbjct: 402 ILVRFHKSLTVKSDELRRLGGGELGNRMKHFVMQFALEKFDLKSKENYWKFKELPDESFI 461
Query: 1162 KHHPEIVEKYEQMWKAKEEQ---LLPRIKPKRNPTNANASGKPTPAVAPNPGAMNSASGA 1332
K P +V+K E+++K E + ++ + KR +A + A+ + + A+
Sbjct: 462 KEFPIVVKKQEEIFKILENEVNSIIGTLGGKRKLKSAITNSGVNNALFTSTNSDPRATSL 521
Query: 1333 GTE---RRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPKNDASVIK 1503
G + T+ +E R ALP AL+KLFQ HKVCSFQ ICQ LR +AL + LPK + +
Sbjct: 522 GEDPPRSMTMSSETRHALPIALKKLFQTHKVCSFQLICQELRGLALAQTMLPKGGSKMSV 581
Query: 1504 AAALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGKGPNAKVK 1683
AA L PQ++L I+ EV +IHG YVLK + +P R+VVI + G GPN K+K
Sbjct: 582 DAANSLDVPQDELKAILGEVACDIHGCYVLKSAQN----DPFRDVVIDMLRGSGPNGKLK 637
Query: 1684 KSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDG 1812
K+EI+EAA+ +L ++ N+E+ K VSE C S GS WVLKSGDG
Sbjct: 638 KAEILEAARRKLGRDVPNNEYIKAVSELCVSKGSFWVLKSGDG 680
>ref|XP_006425716.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
gi|557527706|gb|ESR38956.1| hypothetical protein
CICLE_v10025048mg [Citrus clementina]
Length = 637
Score = 397 bits (1021), Expect = e-108
Identities = 241/549 (43%), Positives = 326/549 (59%), Gaps = 22/549 (4%)
Frame = +1
Query: 67 NFNKMHGTPAEGMSAEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK 246
N +++H + +ED +VREIDV+F PS ID ++KL+V+QYPLRP WRPYELD+ C+
Sbjct: 100 NMDELH------LQDDEDMIVREIDVFFTPS-IDADSKLYVMQYPLRPLWRPYELDERCE 152
Query: 247 -IRVKPASTDVEIELPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSE 423
+RVKP++++VE++L +DV+S N+D E S K TLS+ W P Q T YAIGV G++
Sbjct: 153 EVRVKPSTSEVEMDLSIDVDSNNWDSEKASRLSMPKQTLSTTWMPPQATGYAIGVLIGNK 212
Query: 424 LHLNPVFAVRQLRPSMDFLNPSASKKKN--VSEVPTKATSSTAE----SFRNPNKVM--- 576
LHLNP+ AV QLR SM FL SK+KN SE+P K S + S + NK M
Sbjct: 213 LHLNPIHAVVQLRTSMGFLKSGGSKRKNNVASEIPVKLEDSNQDKSVGSSKKQNKRMGSI 272
Query: 577 DQKDNEP--CIPLEFHDSSSHLSARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKT 750
+Q+ NE +PL++H S S SARY +ML SP+ F M P DY+ SLCP A + T
Sbjct: 273 EQRSNEEECWVPLKYHGSKSDFSARYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGSNNT 332
Query: 751 KPVAXXXXXXXXXXXXXXXXXVFTEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQG 930
K + EG P+ +FS L H+AP+ EDV+ V+ + LLVQG
Sbjct: 333 KSKGPSRRFLLSMPLEERFKKLLCEGEPVQRFSTLMHFAPNDTVEDVIGVLHKNGLLVQG 392
Query: 931 LWVAKTAIRYPDAKGH-LLRDYVLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFE 1107
LW ++ + + + K L RDYVL FS + +K+ L ++ K A E
Sbjct: 393 LWAPRSPLLFNNDKMKCLARDYVLLSFSKNSVVKFQHLSVSPKLRDHI--KCFLNIFAVE 450
Query: 1108 RPKCEDWKFREPTDLMFIKHHPEIVEKYEQMWKAKEEQLLPRIKP--KRNPTNANASGKP 1281
RP +DWKFR+ TDL FIK HP IV K EQ+W A E+Q+ I K T N +GK
Sbjct: 451 RPDFKDWKFRQQTDLSFIKEHPNIVIKQEQVWAAAEKQITDVINKLGKSGSTLRNDAGK- 509
Query: 1282 TPAVAPNPGAMNSA---SGAGTERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRS 1452
+ V + A+NS+ SGA T + + NE+REALPKAL+KLFQ HKVCS I QGLR
Sbjct: 510 SAMVNKHLKAINSSNGPSGALTGNKNLSNESREALPKALQKLFQIHKVCSLPLIKQGLRD 569
Query: 1453 MALNMSALPKNDASVIKAAALCLTA---PQEQLLEIISEVVVNIHGAYVLKVSSEHPELN 1623
+A++ S LPK DA + AA + + ++ E+IS+V NIHG YV K SSE P+
Sbjct: 570 LAISQSTLPKADARMTVLAAEIVDSSFVDTQEFAEVISQVATNIHGFYVSK-SSEDPQHG 628
Query: 1624 PLR-NVVIG 1647
PLR N++IG
Sbjct: 629 PLRLNLLIG 637
>ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|10177619|dbj|BAB10766.1|
unnamed protein product [Arabidopsis thaliana]
gi|332008443|gb|AED95826.1| SIN-like protein [Arabidopsis
thaliana]
Length = 689
Score = 395 bits (1014), Expect = e-107
Identities = 229/580 (39%), Positives = 333/580 (57%), Gaps = 17/580 (2%)
Frame = +1
Query: 112 EEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVEIEL 288
E+D VVREIDV+F PS ID T+L+VLQYPLRP+WRPYE+D+ C+ +RV P+++ VEI+L
Sbjct: 114 EDDVVVREIDVFFKPS-IDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDL 172
Query: 289 PVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTAYAIGVFTGSELHLNPVFAVRQLRPS 468
+DV S N+D K TL + W+ YA+GV +G +LHLNPV AV QLRPS
Sbjct: 173 SMDVHSKNYDSNF--GLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPS 230
Query: 469 MDFLNPSASKKKNVSEVPTKATSSTAESFRNPNKVM-DQK--DNEPCIPLEFHDSSSHLS 639
M L S+ KKK E ++ ++ + + + DQK + E + L++H S
Sbjct: 231 MQSL--SSDKKKKQEESTEESVGTSKKQNKGVQQASTDQKPINEETWVSLKYHGLQSEYC 288
Query: 640 ARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXXXXXXXXXXVF 819
+RY M++ S + F M P Y++ LC + ++ +
Sbjct: 289 SRYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETLKRVLLSLPLKERVQKLL 348
Query: 820 TEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYPDAKGHLLRDYVL 999
EG+P+ ++S LKHYAP+ +ED L ++++ LVQGLW KT + D RDYVL
Sbjct: 349 CEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKTRLLKLDGPVEAARDYVL 408
Query: 1000 CRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDWKFREPTDLMFIKHHPEI 1179
FS TTIKYS++E + K + + + + A ER +DWKF+EPTD+ FIK +PEI
Sbjct: 409 SLFSQNTTIKYSEVEATGD-KMKPLMERMLTEFAKERHVLKDWKFKEPTDVSFIKSYPEI 467
Query: 1180 VEKYEQMWKAKEEQLLPRIKP---------KRNPTNANASGKPTPAVAPNPGAMNSASGA 1332
V++ + W K E L RI +RN ++S P V P + S
Sbjct: 468 VKEQDIFWTDKRENLKSRITAQGGKSRADKRRNVVGTSSSVTVKPEV-PTTLSDKGGSSK 526
Query: 1333 GTERRTI----PNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPKNDASVI 1500
T R + P E ++ALPKAL+K+FQ HKVC ++TICQGLR +A++ S PK D+ +
Sbjct: 527 NTIHRVVTQEMPEELKKALPKALKKVFQTHKVCRYETICQGLRDLAVSTSNNPKADSGMA 586
Query: 1501 KAAALCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGKGPNAKV 1680
AL + A Q +L ++I+ V NIHG+YV S +HPE + LR VVI L G P K+
Sbjct: 587 VNVALAVDAYQGELEDVINGVATNIHGSYVSISSPDHPEYDSLREVVISLLTGSPPGTKL 646
Query: 1681 KKSEIVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLK 1800
K+E+ A + +L++E TN+E+ KV+ E CE++ S WVL+
Sbjct: 647 MKAEVFAAGRTKLEREITNNEYIKVMHEICETNSSGWVLQ 686
>ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
X2 [Solanum tuberosum]
Length = 657
Score = 385 bits (989), Expect = e-104
Identities = 232/583 (39%), Positives = 334/583 (57%), Gaps = 12/583 (2%)
Frame = +1
Query: 109 AEEDFVVREIDVYFNPSPIDQETKLFVLQYPLRPAWRPYELDKECK-IRVKPASTDVEIE 285
++ D VVREIDV NPS D T+L+V QYPLR WRPYEL++ C+ +R++P++ ++E++
Sbjct: 89 SDHDEVVREIDVCINPS-FDPSTQLYVFQYPLRAVWRPYELEERCQEVRLRPSTAEMEVD 147
Query: 286 LPVDVESVNFDPEAPSAQRFDKLTLSSKWRPLQRTA--YAIGVFTGSELHLNPVFAVRQL 459
L +D++S NFD ++ A K LS+ W PL A YA+GV G +LHLNPV AV QL
Sbjct: 148 LAIDLDSKNFDRDSVHAATIKKQMLSTSWMPLPTCASGYAVGVLIGDKLHLNPVHAVVQL 207
Query: 460 RPSMDFLNPSASKKKNVSEVPTKATSSTAESFRNPNKVMDQKDNEPCIPLEFHDSSSHLS 639
RPS L S KK + K+ + + P M + + L++H + S +S
Sbjct: 208 RPSKRNLKESELKKNVTTNNDEKSVENEDVKEKRP---MGPSKKQHWLHLKYHGARSDIS 264
Query: 640 ARYRAKMLSAMRSPLTFPMKPVDYLDSLCPQAAIDKTKPVAXXXXXXXXXXXXXXXXXVF 819
ARY KM SP+ F M PVDYL++ P D T +
Sbjct: 265 ARYLQKMAMEEGSPVPFSMSPVDYLNAFFPGRPTD-TDRLKILRTRLSQLPLEERVRTWL 323
Query: 820 TEGAPIHKFSALKHYAPDHPEEDVLRVVEQFALLVQGLWVAKTAIRYPDAKGH--LLRDY 993
EG PIH+F ALKH APD+ ++++RV++ +A LVQGLWV K+++ Y G L R++
Sbjct: 324 LEGPPIHRFDALKHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLARNF 383
Query: 994 VLCRFSHGTTIKYSDLEWIRNIKSETVWKVAFGDVAFERPKCEDWKFREPTDLMFIKHHP 1173
VL F+ G IK S R + A +A ERP DWK +E D F +
Sbjct: 384 VLYEFTKGILIKKSVFG--RRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLYG 441
Query: 1174 EIVEKYEQMWKAKEEQL---LP--RIKPK-RNPTNANASGKPTPAVAPNPGAMNSASGAG 1335
++V + + W+ +Q+ LP R +P +NP N NA P+ + + +
Sbjct: 442 DVVREKQATWECLGKQINDVLPGGRNRPTMKNPLNPNADIPALPSG-------DKPTSSS 494
Query: 1336 TERRTIPNEAREALPKALRKLFQAHKVCSFQTICQGLRSMALNMSALPKN-DASVIKAAA 1512
R ++ E REALPKAL+++F+ +KVCSFQ I QGLR + ++ S PK I A+
Sbjct: 495 LLRTSMSEEIREALPKALQEVFRTYKVCSFQQIRQGLRKLGVSKSYPPKGAPRKAITASI 554
Query: 1513 LCLTAPQEQLLEIISEVVVNIHGAYVLKVSSEHPELNPLRNVVIGLFIGKGPNAKVKKSE 1692
APQE++ +I++V VNIHG YVLK S ++P+ + LR VVI LF+ +GP+AK+KK+
Sbjct: 555 DVFDAPQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKAS 614
Query: 1693 IVEAAKMQLQKEPTNDEFRKVVSEFCESSGSVWVLKSGDGKPD 1821
+ EAAK+QL ++ TN EF KV+ E C S S WVL+SGDGKP+
Sbjct: 615 VTEAAKLQLNRDITNVEFLKVMKELCHSEKSAWVLRSGDGKPE 657