BLASTX nr result
ID: Rheum21_contig00013305
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00013305
(793 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMT19664.1| Putative LRR receptor-like serine/threonine-prote... 263 4e-68
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 261 2e-67
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g... 259 7e-67
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera] 256 6e-66
emb|CAH66819.1| OSIGBa0093K19.6 [Oryza sativa Indica Group] 256 8e-66
emb|CAE04381.1| OSJNBa0027G07.23 [Oryza sativa Japonica Group] g... 256 8e-66
gb|AAW56918.1| putative polyprotein [Oryza sativa Japonica Group] 254 2e-65
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 253 4e-65
emb|CCH50966.1| T4.5 [Malus x robusta] 253 5e-65
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group] 253 5e-65
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc... 253 7e-65
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 253 7e-65
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 251 2e-64
gb|AAB82754.1| retrofit [Oryza longistaminata] 249 1e-63
emb|CAN73071.1| hypothetical protein VITISV_032383 [Vitis vinifera] 247 3e-63
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 247 4e-63
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 246 5e-63
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 246 7e-63
emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera] 246 7e-63
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 246 9e-63
>gb|EMT19664.1| Putative LRR receptor-like serine/threonine-protein kinase
[Aegilops tauschii]
Length = 963
Score = 263 bits (673), Expect = 4e-68
Identities = 126/209 (60%), Positives = 159/209 (76%)
Frame = -2
Query: 630 PEWRAAMAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGF 451
P WRAAM E+ AL+ TWTLVP + +N + KWVFK K+HA+GSIER KARLVAKGF
Sbjct: 4 PHWRAAMEQEYHALMKNKTWTLVPPPSRVNIIDSKWVFKVKKHADGSIERYKARLVAKGF 63
Query: 450 NQVHGLDYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPG 271
Q GLDY +TFSPVVKP+TIRLLLSLA + W +RQLD+QNAFLHG L+E+VY QPPG
Sbjct: 64 KQRQGLDYEDTFSPVVKPTTIRLLLSLAVSRGWSLRQLDVQNAFLHGLLEEEVYKRQPPG 123
Query: 270 FTHSSFPSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVF 91
F + P H+C L K++YGLKQAPRAW ARL+ AL GF PS AD+SLF+ ++ S ++
Sbjct: 124 FVDHTQPYHLCHLTKAIYGLKQAPRAWHARLASALRTHGFIPSTADTSLFLFQRPSVTMY 183
Query: 90 ILVYVDDLLVISSTPTISDCFVQALCKQF 4
+LVYVDD++++SS+PT +D V AL + F
Sbjct: 184 LLVYVDDIVLVSSSPTAADALVTALGRDF 212
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 261 bits (668), Expect = 2e-67
Identities = 136/263 (51%), Positives = 178/263 (67%)
Frame = -2
Query: 792 QTRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAA 613
+TR + I KP TDGT+ + ++++ S +EA P+WRAA
Sbjct: 895 RTRLQHGISKPKQFTDGTVRYGNAAA--------------RITEPSSVSEALADPQWRAA 940
Query: 612 MAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGL 433
M AEFQAL NTWTLVP + N + KWVFK K +A+GSI+R KARLVAKGF Q +G+
Sbjct: 941 MEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGI 1000
Query: 432 DYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSF 253
DY++TFSPVVK STIRL+LSLA Q+W +RQLD+QNAFLHG L+E VY+ QPPGF ++
Sbjct: 1001 DYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTH 1060
Query: 252 PSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVD 73
P++ C L KSLYGLKQ PRAW++RLS+ L +GF PS+AD SLFI+ S ++ILVYVD
Sbjct: 1061 PNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVD 1120
Query: 72 DLLVISSTPTISDCFVQALCKQF 4
D+++ S+P D + L F
Sbjct: 1121 DIIITGSSPHAIDNVLAKLKDDF 1143
>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
Japonica Group]
Length = 821
Score = 259 bits (662), Expect = 7e-67
Identities = 127/266 (47%), Positives = 176/266 (66%), Gaps = 3/266 (1%)
Frame = -2
Query: 792 QTRSRAHIHKPLLRTDGTIPW---PSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEW 622
+TR ++ I K + TDGT+ W SS P+ EA W
Sbjct: 278 KTRLQSGIRKEKVYTDGTVKWLNFTSSGEPQS------------------LEEAVNNKHW 319
Query: 621 RAAMAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQV 442
+ AM AE+ AL+ TW LVP N + KWV+K KR A+GS++R KARLVAKGF Q
Sbjct: 320 KEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQR 379
Query: 441 HGLDYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTH 262
+G+DY +TFSPVVK +TIR++LSLA + W +RQLD++NAFLHG L+E+VY+ QPPG+
Sbjct: 380 YGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGYEK 439
Query: 261 SSFPSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILV 82
S P+++CKL K+LYGLKQAPRAW++RLS L+ +GF PS+AD+SLF +++G +F+L+
Sbjct: 440 KSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLI 499
Query: 81 YVDDLLVISSTPTISDCFVQALCKQF 4
YVDD+++ SS P + +Q L K F
Sbjct: 500 YVDDIIMASSVPDATSTLLQELSKDF 525
>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
Length = 1361
Score = 256 bits (654), Expect = 6e-66
Identities = 117/216 (54%), Positives = 156/216 (72%)
Frame = -2
Query: 651 FTEASKYPEWRAAMAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKA 472
F A+K+PEW +AM E AL +TW LVP N +G +W+FKTK H++GSIER KA
Sbjct: 843 FKSAAKHPEWLSAMDDEIHALKKNDTWVLVPRPQHHNVVGCRWIFKTKLHSDGSIERHKA 902
Query: 471 RLVAKGFNQVHGLDYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDV 292
RLVA+GF+QVHGLD+ +TFSPVV+P+T+R++LSLA W + QLD++NAFLHG L E+V
Sbjct: 903 RLVAQGFSQVHGLDFGDTFSPVVRPATVRIILSLAVTSGWRLHQLDVKNAFLHGFLNEEV 962
Query: 291 YVVQPPGFTHSSFPSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHR 112
Y+ QPPG+T FP H+C+L ++LYGLKQAPRAWF R S L GF SQADSSLF +
Sbjct: 963 YMEQPPGYTDPQFPQHVCRLKRALYGLKQAPRAWFHRFSSFLLKHGFHSSQADSSLFFYH 1022
Query: 111 QGSAVVFILVYVDDLLVISSTPTISDCFVQALCKQF 4
V++L+YVDD+++ STP++ F+ L +F
Sbjct: 1023 SSLGTVYLLLYVDDMIITGSTPSLVHTFITRLSNEF 1058
>emb|CAH66819.1| OSIGBa0093K19.6 [Oryza sativa Indica Group]
Length = 472
Score = 256 bits (653), Expect = 8e-66
Identities = 131/262 (50%), Positives = 172/262 (65%)
Frame = -2
Query: 789 TRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAAM 610
TR ++ I K + TDGT+ W SS S EA WR AM
Sbjct: 98 TRLQSGICKEKVYTDGTVKWSCFSSS---------------GEPQSLDEAFATNHWREAM 142
Query: 609 AAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGLD 430
AE+QAL+ TW LVP N + KWV+K KR A GS++R KARLVAKGF Q +G+D
Sbjct: 143 DAEYQALMKNQTWHLVPLQQGRNIIDCKWVYKVKRKAYGSLDRYKARLVAKGFKQRYGID 202
Query: 429 YNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSFP 250
Y +TFS VVK +TIR +LS+A + W RQLD+QNAFLHG L+E+V++ QP G+ +S FP
Sbjct: 203 YEDTFSHVVKATTIRTILSIAVSRGWSFRQLDVQNAFLHGILEEEVHMKQPSGYENSKFP 262
Query: 249 SHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVDD 70
+HICKL K+LYGLKQAPRAW+++LS L +GF PS AD+SLF + +G VF+L+YVDD
Sbjct: 263 NHICKLDKALYGLKQAPRAWYSKLSTKLQALGFKPSMADTSLFFYSKGDVNVFVLIYVDD 322
Query: 69 LLVISSTPTISDCFVQALCKQF 4
++V SSTP+ + +Q L K+F
Sbjct: 323 IIVASSTPSATSALLQDLTKEF 344
>emb|CAE04381.1| OSJNBa0027G07.23 [Oryza sativa Japonica Group]
gi|38347090|emb|CAE02562.2| OSJNBa0006M15.5 [Oryza
sativa Japonica Group]
Length = 472
Score = 256 bits (653), Expect = 8e-66
Identities = 131/262 (50%), Positives = 172/262 (65%)
Frame = -2
Query: 789 TRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAAM 610
TR ++ I K + TDGT+ W SS S EA WR AM
Sbjct: 98 TRLQSGICKEKVYTDGTVKWSCFSSS---------------GEPQSLDEAFATNHWREAM 142
Query: 609 AAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGLD 430
AE+QAL+ TW LVP N + KWV+K KR A GS++R KARLVAKGF Q +G+D
Sbjct: 143 DAEYQALMKNQTWHLVPLQQGRNIIDCKWVYKVKRKAYGSLDRYKARLVAKGFKQRYGID 202
Query: 429 YNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSFP 250
Y +TFS VVK +TIR +LS+A + W RQLD+QNAFLHG L+E+V++ QP G+ +S FP
Sbjct: 203 YEDTFSHVVKATTIRTILSIAVSRGWSFRQLDVQNAFLHGILEEEVHMKQPSGYENSKFP 262
Query: 249 SHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVDD 70
+HICKL K+LYGLKQAPRAW+++LS L +GF PS AD+SLF + +G VF+L+YVDD
Sbjct: 263 NHICKLDKALYGLKQAPRAWYSKLSTKLQALGFKPSMADTSLFFYSKGDVNVFVLIYVDD 322
Query: 69 LLVISSTPTISDCFVQALCKQF 4
++V SSTP+ + +Q L K+F
Sbjct: 323 IIVASSTPSATSALLQDLTKEF 344
>gb|AAW56918.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1018
Score = 254 bits (650), Expect = 2e-65
Identities = 118/214 (55%), Positives = 158/214 (73%)
Frame = -2
Query: 645 EASKYPEWRAAMAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARL 466
EA WR AM AE+QAL+ TW LVP N + KWV+K KR A+GS++R KARL
Sbjct: 563 EAFATNHWREAMDAEYQALMKNQTWHLVPPQQGRNIIDCKWVYKVKRKADGSLDRYKARL 622
Query: 465 VAKGFNQVHGLDYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYV 286
VAKGF Q +G+DY +TFSPVVK +TIR +LS+ + W +RQLD+QNAFLHG L+E+VY+
Sbjct: 623 VAKGFKQRYGIDYEDTFSPVVKATTIRTILSITVSRGWSLRQLDVQNAFLHGILEEEVYM 682
Query: 285 VQPPGFTHSSFPSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQG 106
Q PG+ +S FP+HICKL K++YGLKQAPRAW++RLS L +GF PS+ D+SLF + +G
Sbjct: 683 KQTPGYENSKFPNHICKLDKAIYGLKQAPRAWYSRLSTKLQALGFKPSKVDTSLFFYSKG 742
Query: 105 SAVVFILVYVDDLLVISSTPTISDCFVQALCKQF 4
VF+L+YVDD++V SSTP+ + ++ L K+F
Sbjct: 743 DVTVFVLIYVDDIIVASSTPSATSALLRDLTKEF 776
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 253 bits (647), Expect = 4e-65
Identities = 126/266 (47%), Positives = 176/266 (66%), Gaps = 3/266 (1%)
Frame = -2
Query: 792 QTRSRAHIHKPLLRTDGTIPW---PSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEW 622
+TR ++ I K + TDGT+ W S+ PE + +A + W
Sbjct: 894 RTRLQSGIRKEKVYTDGTVKWGMLTSTGEPE------------------NLQDALQNNNW 935
Query: 621 RAAMAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQV 442
+ AM AE+ AL+ NTW LVP N + KWV+K KR +GS++R KARLVAKGF Q
Sbjct: 936 KCAMDAEYMALIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQR 995
Query: 441 HGLDYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTH 262
+G+DY +TFSPVVK +TIR++LS+A + W +RQLD+QNAFLHG L+E+VY+ QPPG+ +
Sbjct: 996 YGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYEN 1055
Query: 261 SSFPSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILV 82
S P ++CKL K+LYGLKQAPRAW++RLS L +GF S+AD+SLF + +GS +F+L+
Sbjct: 1056 PSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLI 1115
Query: 81 YVDDLLVISSTPTISDCFVQALCKQF 4
YVDD++V+SS +Q L K+F
Sbjct: 1116 YVDDIIVVSSRKEAVSALLQDLQKEF 1141
>emb|CCH50966.1| T4.5 [Malus x robusta]
Length = 1670
Score = 253 bits (646), Expect = 5e-65
Identities = 134/263 (50%), Positives = 171/263 (65%)
Frame = -2
Query: 789 TRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAAM 610
TR++A IHKP + T PS+ + TA F +ASK W AM
Sbjct: 1116 TRAKAGIHKPKVFTATKHQLPSTV--DSLTALPPTPST--------FLQASKSSHWMEAM 1165
Query: 609 AAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGLD 430
EFQAL ST TW LVP+ ++ N +G KWVFK K +G+IER KARLVAKGF+Q GLD
Sbjct: 1166 QFEFQALQSTGTWELVPNHSTYNIVGCKWVFKVKHKPDGTIERYKARLVAKGFHQQEGLD 1225
Query: 429 YNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSFP 250
++ETFSPV KP+TIR+LLS+A W + QLD+ NAFLHG L+EDVY+VQPPGF S P
Sbjct: 1226 FSETFSPVAKPTTIRILLSIAVSYYWFIHQLDVSNAFLHGHLKEDVYMVQPPGFVDPSKP 1285
Query: 249 SHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVDD 70
H+CKL KSLYGLKQAPRAW+ A+ +GF+ S +D+SLFI R +++ FILVYVDD
Sbjct: 1286 HHVCKLRKSLYGLKQAPRAWYEAFYTAILSLGFSSSHSDTSLFIKRD-TSITFILVYVDD 1344
Query: 69 LLVISSTPTISDCFVQALCKQFP 1
+++ S+ T + L FP
Sbjct: 1345 IIITGSSVTECQSIISQLQTMFP 1367
>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
Length = 1087
Score = 253 bits (646), Expect = 5e-65
Identities = 128/251 (50%), Positives = 169/251 (67%), Gaps = 4/251 (1%)
Frame = -2
Query: 789 TRSRAHIHKPLLRTDGTIPWP----SSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEW 622
TR +++I KPL RTDGTI W S P C F +A W
Sbjct: 609 TRLQSNIRKPLTRTDGTIRWGMYSGSDKEPTC------------------FDDALADENW 650
Query: 621 RAAMAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQV 442
+ AM E+ AL+ NTW LVP+ + KWVFK KR ++G+I+R KARLVAKGF Q
Sbjct: 651 KKAMDEEYNALIKNNTWHLVPAPIGKYIIDCKWVFKIKRKSDGTIDRYKARLVAKGFKQR 710
Query: 441 HGLDYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTH 262
+G+DY +TFSPVVK STIRL+LSLA + W +RQLD++NAFLHG L+E+VY+ QPPG+
Sbjct: 711 YGIDYEDTFSPVVKISTIRLVLSLAVSKGWSIRQLDVKNAFLHGILEEEVYMKQPPGYVD 770
Query: 261 SSFPSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILV 82
S ++CKL K+LYGLKQAPRAW+ RL D L +GF+ S+AD+SLF +R+G V++ LV
Sbjct: 771 KSSSYYVCKLDKALYGLKQAPRAWYYRLYDKLCQLGFSASKADTSLFFYRKGDVVIYFLV 830
Query: 81 YVDDLLVISST 49
YVDD++V+SS+
Sbjct: 831 YVDDIIVVSSS 841
>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1241
Score = 253 bits (645), Expect = 7e-65
Identities = 116/214 (54%), Positives = 158/214 (73%)
Frame = -2
Query: 645 EASKYPEWRAAMAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARL 466
EA W+ AM AE+ AL+ TW LVP N + KWV+K KR A+GS++R KARL
Sbjct: 836 EAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARL 895
Query: 465 VAKGFNQVHGLDYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYV 286
VAKGF Q +G+DY +TFSPVVK +TIR++LSLA + W +RQLD++NAFLHG L+E+VY+
Sbjct: 896 VAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYM 955
Query: 285 VQPPGFTHSSFPSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQG 106
QPPG+ S P+++CKL K+LYGLKQAPRAW++RLS L+ +GF PS+AD+SLF +++G
Sbjct: 956 KQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKG 1015
Query: 105 SAVVFILVYVDDLLVISSTPTISDCFVQALCKQF 4
+F+L+YVDD++V SS P + +Q L K F
Sbjct: 1016 QVSIFLLIYVDDIIVASSVPDATSTLLQELSKDF 1049
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 253 bits (645), Expect = 7e-65
Identities = 116/214 (54%), Positives = 158/214 (73%)
Frame = -2
Query: 645 EASKYPEWRAAMAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARL 466
EA W+ AM AE+ AL+ TW LVP N + KWV+K KR A+GS++R KARL
Sbjct: 890 EAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARL 949
Query: 465 VAKGFNQVHGLDYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYV 286
VAKGF Q +G+DY +TFSPVVK +TIR++LSLA + W +RQLD++NAFLHG L+E+VY+
Sbjct: 950 VAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYM 1009
Query: 285 VQPPGFTHSSFPSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQG 106
QPPG+ S P+++CKL K+LYGLKQAPRAW++RLS L+ +GF PS+AD+SLF +++G
Sbjct: 1010 KQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKG 1069
Query: 105 SAVVFILVYVDDLLVISSTPTISDCFVQALCKQF 4
+F+L+YVDD++V SS P + +Q L K F
Sbjct: 1070 QVSIFLLIYVDDIIVASSVPDATSTLLQELSKDF 1103
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 251 bits (642), Expect = 2e-64
Identities = 128/262 (48%), Positives = 176/262 (67%)
Frame = -2
Query: 789 TRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAAM 610
TR R+ I K + TDGT+ + C T+T EA W+AAM
Sbjct: 900 TRLRSGIRKEKVYTDGTVKYG------CFTSTGEPQNDK---------EALGDKNWKAAM 944
Query: 609 AAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGLD 430
AE+ AL+ +TW LVP N +G KWV+K KR A+G+++R KARLVAKGF Q +G+D
Sbjct: 945 EAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGID 1004
Query: 429 YNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSFP 250
Y +TFSPVVK +TIR++LS+A + W +RQLD+QNAFLHG L+E+VY+ QPPGF S P
Sbjct: 1005 YEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESFSKP 1064
Query: 249 SHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVDD 70
+++CKL K+LYGLKQAPRAW++RLS L +GF S+AD+SLF +G ++F+LVYVDD
Sbjct: 1065 NYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVDD 1124
Query: 69 LLVISSTPTISDCFVQALCKQF 4
+++ SST + ++ L K+F
Sbjct: 1125 IIIASSTEKATTALLKDLNKEF 1146
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 249 bits (635), Expect = 1e-63
Identities = 129/262 (49%), Positives = 173/262 (66%)
Frame = -2
Query: 789 TRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAAM 610
TR R+ I K + TDGT+ + SS K EA WR AM
Sbjct: 909 TRLRSGIRKEKVYTDGTVKYGCFSSTGEPQNDK---------------EALGDKNWRDAM 953
Query: 609 AAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGLD 430
E+ AL+ +TW LVP N +G KWV+K KR A+G+++R KARLVAKGF Q +G+D
Sbjct: 954 ETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGID 1013
Query: 429 YNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSFP 250
Y +TFSPVVK +TIR++LS+A + W +RQLD+QNAFLHG L+E+VY+ QPPGF SS P
Sbjct: 1014 YEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKP 1073
Query: 249 SHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVDD 70
++CKL K+LYGLKQAPRAW++RLS L +GF S+AD+SLF +G ++F+LVYVDD
Sbjct: 1074 DYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDD 1133
Query: 69 LLVISSTPTISDCFVQALCKQF 4
++V SST + ++ L K+F
Sbjct: 1134 IIVASSTEKATTALLKDLNKEF 1155
>emb|CAN73071.1| hypothetical protein VITISV_032383 [Vitis vinifera]
Length = 1239
Score = 247 bits (631), Expect = 3e-63
Identities = 117/216 (54%), Positives = 157/216 (72%)
Frame = -2
Query: 651 FTEASKYPEWRAAMAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKA 472
F A+K P W AAM E QAL TW LVP + N +G KWVF+TK +GS+ER KA
Sbjct: 710 FKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYFPDGSVERLKA 769
Query: 471 RLVAKGFNQVHGLDYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDV 292
RLVAKG+ QV GLDY +TFSPVVK +T+R++LSLA +W +RQLD++NAFL+GTL E V
Sbjct: 770 RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHV 829
Query: 291 YVVQPPGFTHSSFPSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHR 112
Y+ QPPG+ FP+H+C L K+LYGLKQAPRAWF R S L +GF+ S+AD+SLF+
Sbjct: 830 YMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFH 889
Query: 111 QGSAVVFILVYVDDLLVISSTPTISDCFVQALCKQF 4
Q S+++++L+YVDD++V + P++ D F + L +F
Sbjct: 890 QQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEF 925
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1621
Score = 247 bits (630), Expect = 4e-63
Identities = 127/263 (48%), Positives = 172/263 (65%)
Frame = -2
Query: 792 QTRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAA 613
+TR ++ + K + TDGTI + S T EA K W+ A
Sbjct: 636 RTRLQSGVRKEKVYTDGTIKYKHSWFTASGEPTNDL-------------EALKDKNWKLA 682
Query: 612 MAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGL 433
M +E+ AL+ TW LVP N +G KWV+K KR A+G+++R KARLVAKGF Q +G+
Sbjct: 683 MDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGI 742
Query: 432 DYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSF 253
DY +TFSPVVK +TIR++LSLA + W +RQLD+QNAFLHG L+E+VY++QPPGF +
Sbjct: 743 DYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTK 802
Query: 252 PSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVD 73
P H+CKL K+LYGLKQAPRAWF+RLS L +GF S+AD+SLF +G +F+LVYVD
Sbjct: 803 PHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLVYVD 862
Query: 72 DLLVISSTPTISDCFVQALCKQF 4
D++V SS+ + +Q L +F
Sbjct: 863 DIIVASSSEKATAALLQNLKGEF 885
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 246 bits (629), Expect = 5e-63
Identities = 126/262 (48%), Positives = 173/262 (66%)
Frame = -2
Query: 789 TRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAAM 610
TR R+ I K + T+GT+ + SS K EA WR AM
Sbjct: 912 TRLRSGIRKEKVYTNGTVKYGCFSSTGEPQNDK---------------EALGDKNWRDAM 956
Query: 609 AAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGLD 430
E+ AL+ +TW LVP N +G KWV+K KR A+G+++R K RL+AKGF Q +G+D
Sbjct: 957 ETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGID 1016
Query: 429 YNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSFP 250
Y +TFSPVVK +TIR++LS+A + W +RQLD+QN FLHG L+E+VY+ QPPGF SS P
Sbjct: 1017 YEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQPPGFESSSKP 1076
Query: 249 SHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVDD 70
++CKL+K+LYGLKQAPRAW++RLS LT +GF S+AD+SLF +G ++F+LVYVDD
Sbjct: 1077 DYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDD 1136
Query: 69 LLVISSTPTISDCFVQALCKQF 4
++V SST + ++ L K+F
Sbjct: 1137 IIVASSTEKATTALLKDLNKEF 1158
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 246 bits (628), Expect = 7e-63
Identities = 124/263 (47%), Positives = 176/263 (66%)
Frame = -2
Query: 792 QTRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAA 613
+TR + + KP + TDGTI + C T++ EA W+ A
Sbjct: 776 RTRLQQGVRKPKVYTDGTIRYG------CFTSS---------GEPYDLNEALGDVNWKDA 820
Query: 612 MAAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGL 433
M E+ AL+ TW LVP N +G KWV+K KR A+GS++R KARLVAKG+ Q +G+
Sbjct: 821 MDIEYSALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGI 880
Query: 432 DYNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSF 253
DY++TFSPVVK +TIR++LS+A + W + QLD+QNAFLHG L+E+VY+ QPPG+ S+
Sbjct: 881 DYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVLEEEVYMQQPPGYEDSTK 940
Query: 252 PSHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVD 73
+++CKL K+LYGLKQAPRAW++RLS+ L +GF S+AD+SLF + +GS +F+LVYVD
Sbjct: 941 LNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLVYVD 1000
Query: 72 DLLVISSTPTISDCFVQALCKQF 4
D++V SST ++ + L K+F
Sbjct: 1001 DIIVASSTHKATEALLSDLNKEF 1023
>emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera]
Length = 1508
Score = 246 bits (628), Expect = 7e-63
Identities = 126/262 (48%), Positives = 169/262 (64%), Gaps = 4/262 (1%)
Frame = -2
Query: 777 AHIHKPLLRTDG--TIPWPSSSSPECCTATKXXXXXXXXXXXXSFT--EASKYPEWRAAM 610
A I+ PLL T T+ +P +S CT+T T +A K W AM
Sbjct: 967 ALINPPLLSTSSPSTVSFPVLTSSTDCTSTSDSLPPLLQTTSEPHTYNQAXKSEPWVQAM 1026
Query: 609 AAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGLD 430
E+QALL +TW+LVP + +G +W++K K NGS+ER KARLVA+GF Q G+D
Sbjct: 1027 QHEYQALLRNHTWSLVPPPPLAHIVGCRWIYKLKYLPNGSVERHKARLVAQGFTQTLGVD 1086
Query: 429 YNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSFP 250
Y +TFSP+VKP TIRL+L+LA +W +RQLD++NAFL+G LQE+V++ QP GF H +P
Sbjct: 1087 YFDTFSPIVKPCTIRLILTLAVSFQWXIRQLDVENAFLNGDLQEEVFMAQPQGFVHPQYP 1146
Query: 249 SHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVDD 70
++CKLHK+LYGLKQAPRAWF +L AL GF S+ D+SLFIH S ++ +LVYVDD
Sbjct: 1147 HYVCKLHKALYGLKQAPRAWFQKLRVALVDYGFQSSRVDTSLFIHHTASNILILLVYVDD 1206
Query: 69 LLVISSTPTISDCFVQALCKQF 4
+LV S P + F+ L +F
Sbjct: 1207 ILVTGSNPKLVSHFISYLHDKF 1228
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 246 bits (627), Expect = 9e-63
Identities = 125/262 (47%), Positives = 173/262 (66%)
Frame = -2
Query: 789 TRSRAHIHKPLLRTDGTIPWPSSSSPECCTATKXXXXXXXXXXXXSFTEASKYPEWRAAM 610
TR ++ I K + TDGT+ + ++ T T + +A K W+ AM
Sbjct: 709 TRLQSGIRKEKVYTDGTVKYRTTF----LTVT---------GEPENLDDALKDNNWKKAM 755
Query: 609 AAEFQALLSTNTWTLVPSSASLNPLGVKWVFKTKRHANGSIERRKARLVAKGFNQVHGLD 430
AEF AL + TW LVP N + KWV+K KR +GS++R KARLVAKGF Q +G+D
Sbjct: 756 DAEFMALQNNKTWHLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGID 815
Query: 429 YNETFSPVVKPSTIRLLLSLAAMQRWLVRQLDIQNAFLHGTLQEDVYVVQPPGFTHSSFP 250
Y +TFSPVVK +TIR++LS+A + W +RQLD+QNAFLHG L+E+VY+ QPPG+ SS P
Sbjct: 816 YEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLP 875
Query: 249 SHICKLHKSLYGLKQAPRAWFARLSDALTFMGFTPSQADSSLFIHRQGSAVVFILVYVDD 70
++CKL K+LYGLKQAPRAW++RLS L MGF S+AD+SLF + +G ++F+L+YVDD
Sbjct: 876 GYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDD 935
Query: 69 LLVISSTPTISDCFVQALCKQF 4
++V SS ++ L K+F
Sbjct: 936 IIVTSSRQEAVPALLRDLQKEF 957