BLASTX nr result
ID: Rheum21_contig00013267
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00013267
(331 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN73546.1| hypothetical protein VITISV_038180 [Vitis vinifera] 49 4e-08
ref|XP_002267181.1| PREDICTED: DNA polymerase epsilon subunit 2-... 49 4e-08
emb|CBI15355.3| unnamed protein product [Vitis vinifera] 49 4e-08
ref|XP_002531023.1| DNA polymerase epsilon subunit B, putative [... 51 1e-06
ref|XP_006478101.1| PREDICTED: DNA polymerase epsilon subunit 2-... 48 2e-06
ref|XP_006441363.1| hypothetical protein CICLE_v10019690mg [Citr... 48 2e-06
ref|XP_006441362.1| hypothetical protein CICLE_v10019690mg [Citr... 48 2e-06
ref|XP_002318325.2| DNA polymerase epsilon subunit B family prot... 49 6e-06
gb|EMT04527.1| DNA polymerase epsilon subunit 2 [Aegilops tauschii] 48 6e-06
gb|EMS46400.1| DNA polymerase epsilon subunit 2 [Triticum urartu] 48 6e-06
>emb|CAN73546.1| hypothetical protein VITISV_038180 [Vitis vinifera]
Length = 539
Score = 48.9 bits (115), Expect(2) = 4e-08
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 2 TRKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
TRKK+Q++FKIRGYTLKV+AL+E +SF + F
Sbjct: 5 TRKKVQRKFKIRGYTLKVEALDEILSFLSHF 35
Score = 33.9 bits (76), Expect(2) = 4e-08
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 214 AVKSSILDKESVHRVVS*LL 273
++KSSILDKESVHRVVS LL
Sbjct: 54 SLKSSILDKESVHRVVSLLL 73
>ref|XP_002267181.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Vitis vinifera]
Length = 527
Score = 48.9 bits (115), Expect(2) = 4e-08
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 2 TRKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
TRKK+Q++FKIRGYTLKV+AL+E +SF + F
Sbjct: 5 TRKKVQRKFKIRGYTLKVEALDEILSFLSHF 35
Score = 33.9 bits (76), Expect(2) = 4e-08
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 214 AVKSSILDKESVHRVVS*LL 273
++KSSILDKESVHRVVS LL
Sbjct: 54 SLKSSILDKESVHRVVSLLL 73
>emb|CBI15355.3| unnamed protein product [Vitis vinifera]
Length = 527
Score = 48.9 bits (115), Expect(2) = 4e-08
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 2 TRKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
TRKK+Q++FKIRGYTLKV+AL+E +SF + F
Sbjct: 5 TRKKVQRKFKIRGYTLKVEALDEILSFLSHF 35
Score = 33.9 bits (76), Expect(2) = 4e-08
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 214 AVKSSILDKESVHRVVS*LL 273
++KSSILDKESVHRVVS LL
Sbjct: 54 SLKSSILDKESVHRVVSLLL 73
>ref|XP_002531023.1| DNA polymerase epsilon subunit B, putative [Ricinus communis]
gi|223529398|gb|EEF31361.1| DNA polymerase epsilon
subunit B, putative [Ricinus communis]
Length = 536
Score = 50.8 bits (120), Expect(2) = 1e-06
Identities = 22/30 (73%), Positives = 27/30 (90%)
Frame = +2
Query: 5 RKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
RKK+QK+FK+RGYTLKVDAL+E + F NRF
Sbjct: 7 RKKVQKKFKVRGYTLKVDALDEILPFVNRF 36
Score = 27.3 bits (59), Expect(2) = 1e-06
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 208 KYAVKSSILDKESVHRVVS*LL 273
K V+SSI+DKE + RV+S L+
Sbjct: 57 KVGVRSSIIDKEPIRRVISSLV 78
>ref|XP_006478101.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Citrus
sinensis]
Length = 528
Score = 48.1 bits (113), Expect(2) = 2e-06
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +2
Query: 2 TRKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
TRKK+QK+ KIRGY L++DAL+E +SF NRF
Sbjct: 5 TRKKIQKKLKIRGYGLRMDALDEILSFVNRF 35
Score = 29.3 bits (64), Expect(2) = 2e-06
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +1
Query: 214 AVKSSILDKESVHRVVS*LLR 276
++KSSI+DKESV+RV S LL+
Sbjct: 55 SLKSSIIDKESVNRVTSVLLQ 75
>ref|XP_006441363.1| hypothetical protein CICLE_v10019690mg [Citrus clementina]
gi|557543625|gb|ESR54603.1| hypothetical protein
CICLE_v10019690mg [Citrus clementina]
Length = 528
Score = 48.1 bits (113), Expect(2) = 2e-06
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +2
Query: 2 TRKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
TRKK+QK+ KIRGY L++DAL+E +SF NRF
Sbjct: 5 TRKKIQKKMKIRGYGLRMDALDEILSFVNRF 35
Score = 29.3 bits (64), Expect(2) = 2e-06
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +1
Query: 214 AVKSSILDKESVHRVVS*LLR 276
++KSSI+DKESV+RV S LL+
Sbjct: 55 SLKSSIIDKESVNRVTSVLLQ 75
>ref|XP_006441362.1| hypothetical protein CICLE_v10019690mg [Citrus clementina]
gi|557543624|gb|ESR54602.1| hypothetical protein
CICLE_v10019690mg [Citrus clementina]
Length = 418
Score = 48.1 bits (113), Expect(2) = 2e-06
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +2
Query: 2 TRKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
TRKK+QK+ KIRGY L++DAL+E +SF NRF
Sbjct: 5 TRKKIQKKMKIRGYGLRMDALDEILSFVNRF 35
Score = 29.3 bits (64), Expect(2) = 2e-06
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +1
Query: 214 AVKSSILDKESVHRVVS*LLR 276
++KSSI+DKESV+RV S LL+
Sbjct: 55 SLKSSIIDKESVNRVTSVLLQ 75
>ref|XP_002318325.2| DNA polymerase epsilon subunit B family protein [Populus
trichocarpa] gi|550326319|gb|EEE96545.2| DNA polymerase
epsilon subunit B family protein [Populus trichocarpa]
Length = 518
Score = 48.9 bits (115), Expect(2) = 6e-06
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2
Query: 5 RKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
RK +QK+FKIRGYTLK+DAL++ +SF NRF
Sbjct: 6 RKLIQKKFKIRGYTLKIDALDQILSFTNRF 35
Score = 26.6 bits (57), Expect(2) = 6e-06
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 208 KYAVKSSILDKESVHRVVS*LL 273
K V+SSILDKE V R ++ LL
Sbjct: 56 KLGVRSSILDKEPVSRAITALL 77
>gb|EMT04527.1| DNA polymerase epsilon subunit 2 [Aegilops tauschii]
Length = 462
Score = 47.8 bits (112), Expect(2) = 6e-06
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2
Query: 5 RKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
RKKLQ++F++RG+TLKVDALEEA +F RF
Sbjct: 62 RKKLQRKFRLRGFTLKVDALEEAAAFLARF 91
Score = 27.7 bits (60), Expect(2) = 6e-06
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 202 LGKYAVKSSILDKESVHRVVS*LL 273
L K +KSSILD+++V RVVS L+
Sbjct: 106 LDKEPLKSSILDRDAVRRVVSLLV 129
>gb|EMS46400.1| DNA polymerase epsilon subunit 2 [Triticum urartu]
Length = 409
Score = 47.8 bits (112), Expect(2) = 6e-06
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = +2
Query: 5 RKKLQKQFKIRGYTLKVDALEEAISFFNRF 94
RKKLQ++F++RG+TLKVDALEEA +F RF
Sbjct: 9 RKKLQRKFRLRGFTLKVDALEEAAAFLARF 38
Score = 27.7 bits (60), Expect(2) = 6e-06
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 202 LGKYAVKSSILDKESVHRVVS*LL 273
L K +KSSILD+++V RVVS L+
Sbjct: 53 LDKEPLKSSILDRDAVRRVVSLLV 76