BLASTX nr result
ID: Rheum21_contig00012759
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00012759
(701 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 391 e-106
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 391 e-106
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 389 e-106
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 389 e-106
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 389 e-106
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 387 e-105
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 385 e-105
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 384 e-104
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 361 5e-99
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 315 9e-84
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 272 9e-71
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 229 5e-58
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 229 5e-58
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 226 7e-57
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 225 9e-57
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 219 7e-55
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 217 3e-54
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 217 3e-54
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 216 6e-54
ref|YP_002341559.1| replication-associated protein [Schlumberger... 204 2e-50
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 391 bits (1004), Expect = e-106
Identities = 187/227 (82%), Positives = 205/227 (90%)
Frame = -2
Query: 682 TDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHW 503
+ +P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW
Sbjct: 527 SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586
Query: 502 NEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 323
P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587 QGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646
Query: 322 DNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQ 143
+N NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647 ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706
Query: 142 FRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
FRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGD
Sbjct: 707 FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGD 753
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 391 bits (1004), Expect = e-106
Identities = 187/227 (82%), Positives = 205/227 (90%)
Frame = -2
Query: 682 TDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHW 503
+ +P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW
Sbjct: 527 SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586
Query: 502 NEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 323
P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587 QGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646
Query: 322 DNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQ 143
+N NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647 ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706
Query: 142 FRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
FRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGD
Sbjct: 707 FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGD 753
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 389 bits (1000), Expect = e-106
Identities = 186/227 (81%), Positives = 204/227 (89%)
Frame = -2
Query: 682 TDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHW 503
+ +P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW
Sbjct: 527 SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586
Query: 502 NEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 323
P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587 QGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646
Query: 322 DNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQ 143
+N NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647 ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706
Query: 142 FRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
FRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGD
Sbjct: 707 FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGD 753
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 389 bits (1000), Expect = e-106
Identities = 186/227 (81%), Positives = 204/227 (89%)
Frame = -2
Query: 682 TDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHW 503
+ +P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW
Sbjct: 527 SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586
Query: 502 NEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 323
P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587 QGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646
Query: 322 DNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQ 143
+N NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647 ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706
Query: 142 FRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
FRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGD
Sbjct: 707 FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGD 753
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 389 bits (1000), Expect = e-106
Identities = 186/227 (81%), Positives = 204/227 (89%)
Frame = -2
Query: 682 TDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHW 503
+ +P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW
Sbjct: 527 SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586
Query: 502 NEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 323
P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT
Sbjct: 587 QGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLT 646
Query: 322 DNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQ 143
+N NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647 ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706
Query: 142 FRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
FRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGD
Sbjct: 707 FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGD 753
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 387 bits (993), Expect = e-105
Identities = 185/227 (81%), Positives = 204/227 (89%)
Frame = -2
Query: 682 TDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHW 503
+ +P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW
Sbjct: 527 SSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHW 586
Query: 502 NEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 323
P ++++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLT
Sbjct: 587 QGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLT 646
Query: 322 DNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQ 143
+N NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQ
Sbjct: 647 ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQ 706
Query: 142 FRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
FRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGD
Sbjct: 707 FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGD 753
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 385 bits (990), Expect = e-105
Identities = 185/226 (81%), Positives = 201/226 (88%)
Frame = -2
Query: 679 DQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWN 500
D P +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+ATLP HW
Sbjct: 533 DAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQ 592
Query: 499 EPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTD 320
L ++L+TLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+
Sbjct: 593 GHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTE 652
Query: 319 NVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQF 140
N LAISVIHGAGGSGKSQALQTLLRQ+ LPIEVVLPTNELRLDWLKKLPHNPPEQF
Sbjct: 653 NTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQF 712
Query: 139 RTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
RTFERAFV S SP+VIFDDYGKLPQGY+EAFA+THA+LELVILTGD
Sbjct: 713 RTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGD 758
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 384 bits (986), Expect = e-104
Identities = 183/227 (80%), Positives = 202/227 (88%)
Frame = -2
Query: 682 TDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHW 503
T +P DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW
Sbjct: 527 TLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHW 586
Query: 502 NEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 323
P + ++++TLRS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML
Sbjct: 587 QGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLA 646
Query: 322 DNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQ 143
+N NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQ
Sbjct: 647 ENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQ 706
Query: 142 FRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
FRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA+THASLELVILTGD
Sbjct: 707 FRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGD 753
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 361 bits (927), Expect(2) = 5e-99
Identities = 172/207 (83%), Positives = 187/207 (90%)
Frame = -2
Query: 622 KLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPT 443
K +GFEALEIQTDPSTG+ IMPITD R+LP+A +P HW+ P K++ TLR+LNRFPT
Sbjct: 535 KAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPT 594
Query: 442 SWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGK 263
W PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLTDN + AISVIHGAGGSGK
Sbjct: 595 PWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGK 654
Query: 262 SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDD 83
SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ P+VIFDD
Sbjct: 655 SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDD 714
Query: 82 YGKLPQGYIEAFAMTHASLELVILTGD 2
YGKLPQGYIEAFAMTHA+LEL+ILTGD
Sbjct: 715 YGKLPQGYIEAFAMTHANLELIILTGD 741
Score = 26.9 bits (58), Expect(2) = 5e-99
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 680 RPSPGQQRPRNPALGRLAAQTER 612
R P QQR NP +G LAA+ +R
Sbjct: 516 RRHPRQQRSTNPPMGSLAAKAKR 538
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 315 bits (807), Expect = 9e-84
Identities = 152/220 (69%), Positives = 174/220 (79%), Gaps = 1/220 (0%)
Frame = -2
Query: 658 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPG-LSK 482
DP TLPW AWLP L ALGFEA EIQTDP IMPITD++ LP T E+ + K
Sbjct: 515 DPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDK 574
Query: 481 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 302
V+ TL+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LT+ L
Sbjct: 575 VVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRL 634
Query: 301 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 122
+SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KLPHNPPEQFRTFERA
Sbjct: 635 GLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERA 694
Query: 121 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
FV S +P+VIFDDYGKLPQG++EAFA+ L+L ILTGD
Sbjct: 695 FVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGD 734
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 272 bits (695), Expect = 9e-71
Identities = 128/221 (57%), Positives = 165/221 (74%)
Frame = -2
Query: 664 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLS 485
N+ A LPW W+PKLNALGFEA E Q P T +IMPITD+ K +P H
Sbjct: 612 NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667
Query: 484 KVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN 305
++L L++L+R PT W PD RA++FTSD+KN RTGK L +E+Q+WKE QT+ D+
Sbjct: 668 ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRP 727
Query: 304 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 125
+ +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+
Sbjct: 728 VPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEK 787
Query: 124 AFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD
Sbjct: 788 AYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGD 828
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 229 bits (585), Expect = 5e-58
Identities = 118/224 (52%), Positives = 148/224 (66%), Gaps = 1/224 (0%)
Frame = -2
Query: 670 PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 494
PV++ LPW W P L LGF+A EIQ P VIMPIT+ V LP + + H
Sbjct: 543 PVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598
Query: 493 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 314
V+ L L+R PT W P RAR++TSD+KN RTG L +E+ TWKETQT+ + +
Sbjct: 599 --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656
Query: 313 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 134
+ +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P PE+ +T
Sbjct: 657 EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716
Query: 133 FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
+ERAF SP+V+FDDYGKLP GYIEA+ +ELVILTGD
Sbjct: 717 YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGD 760
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 229 bits (585), Expect = 5e-58
Identities = 118/224 (52%), Positives = 148/224 (66%), Gaps = 1/224 (0%)
Frame = -2
Query: 670 PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 494
PV++ LPW W P L LGF+A EIQ P VIMPIT+ V LP + + H
Sbjct: 543 PVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598
Query: 493 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 314
V+ L L+R PT W P RAR++TSD+KN RTG L +E+ TWKETQT+ + +
Sbjct: 599 --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656
Query: 313 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 134
+ +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P PE+ +T
Sbjct: 657 EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716
Query: 133 FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
+ERAF SP+V+FDDYGKLP GYIEA+ +ELVILTGD
Sbjct: 717 YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGD 760
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 226 bits (575), Expect = 7e-57
Identities = 105/140 (75%), Positives = 120/140 (85%)
Frame = -2
Query: 673 VPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEP 494
+P DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A P HW P
Sbjct: 530 LPSPQDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGP 589
Query: 493 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 314
+ ++++TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++
Sbjct: 590 DMEQIISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTEST 649
Query: 313 TANLAISVIHGAGGSGKSQA 254
NLAISVIHGAGGSGKSQA
Sbjct: 650 QTNLAISVIHGAGGSGKSQA 669
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 225 bits (574), Expect = 9e-57
Identities = 118/215 (54%), Positives = 150/215 (69%)
Frame = -2
Query: 646 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 467
LPW AW+PKL LGF+ ++Q DP+ G +I PI ++R +PK PE E V TL
Sbjct: 707 LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760
Query: 466 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 287
L R PT + P+ RARA+TSDVKN R G L ++ + W L + LAISVI
Sbjct: 761 DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820
Query: 286 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 107
HGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP P E+F+TFE+A +
Sbjct: 821 HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880
Query: 106 SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
+PIVIFDDYGKLP GY+EAF + ++++L+ILTGD
Sbjct: 881 TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGD 915
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 219 bits (558), Expect = 7e-55
Identities = 117/219 (53%), Positives = 146/219 (66%)
Frame = -2
Query: 658 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 479
+P LPW AWL KL LGF ++Q DP+ G +I PI ++ LPK + PE N P L K+
Sbjct: 697 EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753
Query: 478 LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 299
L S R PT + P RA+A++SDVKNSR G L ++ + W L +N LA
Sbjct: 754 LN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810
Query: 298 ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 119
ISVIHGAGGSGKS+ALQ L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A
Sbjct: 811 ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870
Query: 118 VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
+ P VIFDDYGKLP GYIEAF+ +S EL++LTGD
Sbjct: 871 LAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGD 909
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 217 bits (553), Expect = 3e-54
Identities = 116/219 (52%), Positives = 146/219 (66%)
Frame = -2
Query: 658 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 479
+P LPW AWL KL LGF ++Q DP+ G +I PI ++ LPK + PE N P L K+
Sbjct: 697 EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753
Query: 478 LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 299
L R PT + P RA+A++SDVKNSR G L ++ + W L +N LA
Sbjct: 754 LNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810
Query: 298 ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 119
ISVIHGAGGSGKS+ALQ L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A
Sbjct: 811 ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870
Query: 118 VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
+ P VIFDDYGKLP GYIEAF+ +S+EL++LTGD
Sbjct: 871 LAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGD 909
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 217 bits (553), Expect = 3e-54
Identities = 116/219 (52%), Positives = 146/219 (66%)
Frame = -2
Query: 658 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 479
+P LPW AWL KL LGF +++Q DP+ G +I PI V+ LPK + PE N P L K+
Sbjct: 697 EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753
Query: 478 LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 299
L R PT + P RA+A++SDVKNSR G L ++ + W L +N LA
Sbjct: 754 LDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810
Query: 298 ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 119
ISVIHGAGGSGKS+ALQ L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A
Sbjct: 811 ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870
Query: 118 VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
+ P VIFDDYGKLP GYIE+F+ +S EL++LTGD
Sbjct: 871 LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGD 909
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 216 bits (550), Expect = 6e-54
Identities = 115/219 (52%), Positives = 146/219 (66%)
Frame = -2
Query: 658 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 479
+P LPW AWL KL LGF +++Q DP+ G +I PI V+ LPK + PE +P L K+
Sbjct: 697 EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKV-DPSLLKM 753
Query: 478 LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 299
L R PT + P RA+A++SDVKNSR G L ++ + W L +N LA
Sbjct: 754 LDNQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810
Query: 298 ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 119
ISVIHGAGGSGKS+ALQ L+ NPD + +VLPTNELRLDWLKKLP P +Q +TFE+A
Sbjct: 811 ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870
Query: 118 VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
+ P VIFDDYGKLP GYIE+F+ +S EL++LTGD
Sbjct: 871 LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGD 909
>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
gi|217316801|gb|AAR11537.2| replication-associated
protein [Schlumbergera virus X]
Length = 1545
Score = 204 bits (520), Expect = 2e-50
Identities = 103/221 (46%), Positives = 142/221 (64%)
Frame = -2
Query: 664 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLS 485
+++ + LPW AWLP LN GF+ + Q +P+ G +I PI D++ L K + PG++
Sbjct: 710 HAETSVLPWQAWLPILNVAGFKGTQSQVNPNDGSLISPILDIKKLEKTPA----SHPGIN 765
Query: 484 KVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN 305
+VLT + +R PT + PD RA+AF SDVKN R G L +++ W E + T+
Sbjct: 766 EVLTCI---HRLPTPFTPDPLRAKAFGSDVKNLRIGALLKHQSKEWLEAFSRKTEMPPRT 822
Query: 304 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 125
+ +SVIHG GGSGKS ALQ LR NP+ I V+LPTNELRLDW +KLP P +TFE+
Sbjct: 823 IGLSVIHGTGGSGKSHALQDFLRNNPEERITVILPTNELRLDWQRKLPQAHPNSLKTFEK 882
Query: 124 AFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2
+ + S +VI DDY KLP G+IEA+ T++ LE +ILTGD
Sbjct: 883 SLLVGASSVVIMDDYTKLPAGFIEAYINTNSGLETLILTGD 923