BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00012037
         (3117 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   845   0.0  
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   845   0.0  
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   834   0.0  
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   828   0.0  
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   828   0.0  
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              815   0.0  
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   808   0.0  
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   788   0.0  
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   763   0.0  
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   757   0.0  
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   756   0.0  
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   756   0.0  
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   755   0.0  
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme...   749   0.0  
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   749   0.0  
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps...   749   0.0  
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe...   748   0.0  
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   743   0.0  
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps...   734   0.0  
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   728   0.0  

>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  845 bits (2183), Expect = 0.0
 Identities = 461/880 (52%), Positives = 606/880 (68%), Gaps = 13/880 (1%)
 Frame = -3

Query: 2749 TSGAVLAALHELEFRKAFLILSYIGRNKLEEVTCVAEL---KDLGAVHEMGAFENRIWDR 2579
            T+   L AL ELEFRKAFLILSY+G   LEEV  V ++   KDL     M  FE++IW+ 
Sbjct: 12   TTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDL----PMRTFESKIWEA 67

Query: 2578 FGSR--YSEKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENV 2405
            FG R  Y +++DRVK +DWDSG+ + YHC+V  DGSY  KGP L+K   +LQ+ LGD+N+
Sbjct: 68   FGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNI 127

Query: 2404 LIVKFYDLDSSRKNYGPSVS--YTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNSSSG 2231
            L+VKF ++   R +   S+   ++ Y KV  EGI VGL+ +RFFVFKDGGKEEK+   + 
Sbjct: 128  LMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTT 187

Query: 2230 S-IKSYYVNVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTI 2054
            S +K ++V ++S A   + Q +     ++   R +FMHV NLSSLS YMARFSLILSKT+
Sbjct: 188  SPVKCFFVRMESVASI-DNQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTM 246

Query: 2053 TLEVDLNDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFK 1874
             LEVDL+  D+  + I D PC+D +G  VY  DGK  IHTDGTG+IS +LAL+CP+N FK
Sbjct: 247  NLEVDLSCVDI--KTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFK 304

Query: 1873 GTSLNDRFIERYLEIVRPGTSTSQLKPDMLQ--PPLLIQFRMFHKGRAVKGTVLVNKKLQ 1700
            GT L    IER    +       +  P+     PPLLIQFR+F+ GRAVKGT LVNKKL 
Sbjct: 305  GTCLRASNIER----LNVHNEVMEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLT 360

Query: 1699 GKRIQIRPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFF 1520
             + + IRPSMIKVE DP LS   + +S EIV TS RP+K  LS+ LIALL+YGGVP +FF
Sbjct: 361  HQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFF 420

Query: 1519 IGILVNEIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILG 1340
            +GI+ N + DAH ILSNK AAL+VA+NYG+MDDN  VA MI  GIPL+EPY+Q RLSIL 
Sbjct: 421  MGIVNNALEDAHGILSNKNAALRVALNYGDMDDNI-VATMIGCGIPLEEPYLQCRLSILM 479

Query: 1339 KVELKSLKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGD 1160
            K E KSLK GK+P+ +S+Y+MGT DPTG L S+EVCII + GQ  G+VL+YR PG+HFGD
Sbjct: 480  KEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGD 539

Query: 1159 VHILKAKRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFR 980
            +HILKA  V+ LED VG +KY IFFP  GPRSLAD+M+GGDFDGDM+FVSR+P+LL  F+
Sbjct: 540  IHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFK 599

Query: 979  QSEPWTPTPLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMD 800
            Q+EPWTP+   S     +RKPSEF+            L  RFQP ++ G+AA+SWL+ MD
Sbjct: 600  QTEPWTPS--TSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMD 657

Query: 799  EMLSLGDEQKDKKLDLQNKMLRLVDIYYEALDAPKK-GKKVVVPRDLIPKKYPHFMRKAD 623
             +L+LG++  ++ + ++  +  L+DIYY+ALDAPKK G+++ VP  L  + +PHFM K +
Sbjct: 658  RLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNE 717

Query: 622  QCSYKSTSVLGEIFDKADELQ-LETPAVQVWKLPCFDIEVPLRCITSWEGHYKRYKGEMS 446
            + +Y+STS+LG+I+DK    + ++  +  VWKLPCFD EV    +  W+  Y +Y+ EM 
Sbjct: 718  KKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMR 777

Query: 445  DALKSGDEKDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQ 266
            +ALK+G+E +  AN VI KYK+ LY A EF  S R  EEI  +A+A+Y V Y  A     
Sbjct: 778  NALKAGEESNDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGV 837

Query: 265  VNKCGFAWRVAGSALMKIY-MEEQDEKPVYCLPSVLREIL 149
            V  C FAWRVAG AL  +Y ++ Q E+P+ C PS L+ IL
Sbjct: 838  VGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSALKGIL 877


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  845 bits (2183), Expect = 0.0
 Identities = 461/880 (52%), Positives = 606/880 (68%), Gaps = 13/880 (1%)
 Frame = -3

Query: 2749 TSGAVLAALHELEFRKAFLILSYIGRNKLEEVTCVAEL---KDLGAVHEMGAFENRIWDR 2579
            T+   L AL ELEFRKAFLILSY+G   LEEV  V ++   KDL     M  FE++IW+ 
Sbjct: 34   TTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDL----PMRTFESKIWEA 89

Query: 2578 FGSR--YSEKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENV 2405
            FG R  Y +++DRVK +DWDSG+ + YHC+V  DGSY  KGP L+K   +LQ+ LGD+N+
Sbjct: 90   FGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNI 149

Query: 2404 LIVKFYDLDSSRKNYGPSVS--YTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNSSSG 2231
            L+VKF ++   R +   S+   ++ Y KV  EGI VGL+ +RFFVFKDGGKEEK+   + 
Sbjct: 150  LMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTT 209

Query: 2230 S-IKSYYVNVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTI 2054
            S +K ++V ++S A   + Q +     ++   R +FMHV NLSSLS YMARFSLILSKT+
Sbjct: 210  SPVKCFFVRMESVASI-DNQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTM 268

Query: 2053 TLEVDLNDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFK 1874
             LEVDL+  D+  + I D PC+D +G  VY  DGK  IHTDGTG+IS +LAL+CP+N FK
Sbjct: 269  NLEVDLSCVDI--KTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFK 326

Query: 1873 GTSLNDRFIERYLEIVRPGTSTSQLKPDMLQ--PPLLIQFRMFHKGRAVKGTVLVNKKLQ 1700
            GT L    IER    +       +  P+     PPLLIQFR+F+ GRAVKGT LVNKKL 
Sbjct: 327  GTCLRASNIER----LNVHNEVMEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLT 382

Query: 1699 GKRIQIRPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFF 1520
             + + IRPSMIKVE DP LS   + +S EIV TS RP+K  LS+ LIALL+YGGVP +FF
Sbjct: 383  HQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFF 442

Query: 1519 IGILVNEIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILG 1340
            +GI+ N + DAH ILSNK AAL+VA+NYG+MDDN  VA MI  GIPL+EPY+Q RLSIL 
Sbjct: 443  MGIVNNALEDAHGILSNKNAALRVALNYGDMDDNI-VATMIGCGIPLEEPYLQCRLSILM 501

Query: 1339 KVELKSLKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGD 1160
            K E KSLK GK+P+ +S+Y+MGT DPTG L S+EVCII + GQ  G+VL+YR PG+HFGD
Sbjct: 502  KEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGD 561

Query: 1159 VHILKAKRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFR 980
            +HILKA  V+ LED VG +KY IFFP  GPRSLAD+M+GGDFDGDM+FVSR+P+LL  F+
Sbjct: 562  IHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFK 621

Query: 979  QSEPWTPTPLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMD 800
            Q+EPWTP+   S     +RKPSEF+            L  RFQP ++ G+AA+SWL+ MD
Sbjct: 622  QTEPWTPS--TSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMD 679

Query: 799  EMLSLGDEQKDKKLDLQNKMLRLVDIYYEALDAPKK-GKKVVVPRDLIPKKYPHFMRKAD 623
             +L+LG++  ++ + ++  +  L+DIYY+ALDAPKK G+++ VP  L  + +PHFM K +
Sbjct: 680  RLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNE 739

Query: 622  QCSYKSTSVLGEIFDKADELQ-LETPAVQVWKLPCFDIEVPLRCITSWEGHYKRYKGEMS 446
            + +Y+STS+LG+I+DK    + ++  +  VWKLPCFD EV    +  W+  Y +Y+ EM 
Sbjct: 740  KKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMR 799

Query: 445  DALKSGDEKDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQ 266
            +ALK+G+E +  AN VI KYK+ LY A EF  S R  EEI  +A+A+Y V Y  A     
Sbjct: 800  NALKAGEESNDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGV 859

Query: 265  VNKCGFAWRVAGSALMKIY-MEEQDEKPVYCLPSVLREIL 149
            V  C FAWRVAG AL  +Y ++ Q E+P+ C PS L+ IL
Sbjct: 860  VGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSALKGIL 899


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  834 bits (2154), Expect = 0.0
 Identities = 460/882 (52%), Positives = 603/882 (68%), Gaps = 12/882 (1%)
 Frame = -3

Query: 2758 SGQTSGAVLAALHELEFRKAFLILSYIGRNKLEEVTCVAEL---KDLGAVHEMGAFENRI 2588
            S  T+   L AL ELEFRKAFLIL+Y+G   LEEV    ++   KDL     M  FE++I
Sbjct: 9    SESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDL----PMETFESKI 64

Query: 2587 WDRFGSR--YSEKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGD 2414
            WD FG R  Y +++DRVK +DWDSG+ + YHC+V  DGSY  KGP L+K   +LQ+ LGD
Sbjct: 65   WDAFGCRRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQRTLGD 124

Query: 2413 ENVLIVKFYDLDSSRKNYGPSVS--YTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNS 2240
            +N+L+VKF ++   R +   S+   +  Y KV +EGI VGL+ +RFFVFKDGGKEEK+  
Sbjct: 125  DNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDGGKEEKKKD 184

Query: 2239 SSGS-IKSYYVNVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILS 2063
             + S +K ++V ++S A   + Q +     ++   R +FMHV NLSSLS YMARFSLILS
Sbjct: 185  PTTSPVKCFFVCMESVASV-DNQDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILS 243

Query: 2062 KTITLEVDLNDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQN 1883
            KT+ LEVDL+  D+  + I D PC+D +G  VY  DGK  IHTDGTG+IS +LAL+CP+N
Sbjct: 244  KTMNLEVDLSFVDI--KPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKN 301

Query: 1882 CFKGTSLNDRFIERYLEIVRPGTSTSQLKPDMLQ--PPLLIQFRMFHKGRAVKGTVLVNK 1709
              KGT L    IER    +R      +  P+ L   PPLLIQFR+F+ GRAVKGT LVNK
Sbjct: 302  QVKGTCLQASNIER----LRVHNEVMEQNPECLHGDPPLLIQFRLFNNGRAVKGTFLVNK 357

Query: 1708 KLQGKRIQIRPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPR 1529
            KL  + + +RPSMIKVE DP LS   + +S EIV TS RP+K  LS+ LIALL+YGGVP 
Sbjct: 358  KLNHRTLHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPE 417

Query: 1528 DFFIGILVNEIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLS 1349
            +FF+GIL N + DAH ILSNK+AAL+VA+NYG+MDDN  VA MI  GIPL+EPY+Q  LS
Sbjct: 418  EFFMGILNNALEDAHGILSNKKAALRVALNYGDMDDNI-VATMIGCGIPLEEPYLQHHLS 476

Query: 1348 ILGKVELKSLKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVH 1169
            IL K E KSLK GK+P+ +S+Y+MGT DPTG L S+EVCII + GQ  G+VLVYR PG+H
Sbjct: 477  ILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLH 536

Query: 1168 FGDVHILKAKRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLT 989
            FGD+HILKA  V+ LED VG +KY IFFP  GPRSLAD+M+GGDFDGDM+FVSR+P+LL 
Sbjct: 537  FGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPRLLE 596

Query: 988  CFRQSEPWTPTPLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLS 809
             F+Q+EPWTP+   S     +RKPSEF+            L  RFQP  + G+AA+SWL+
Sbjct: 597  NFKQTEPWTPS--TSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSFTVGVAADSWLA 654

Query: 808  YMDEMLSLGDEQKDKKLDLQNKMLRLVDIYYEALDAPKK-GKKVVVPRDLIPKKYPHFMR 632
             MD +L+LG++  ++   ++  +  L+DIYY+ALDAPKK G+K+ VP  L  + +PHFM 
Sbjct: 655  MMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFME 714

Query: 631  KADQCSYKSTSVLGEIFDKADELQLETPAVQVWKLPCFDIEVPLRCITSWEGHYKRYKGE 452
            K ++ +Y+STS+LG+I+DK          V+ ++       V   C+  W+G Y +Y+ E
Sbjct: 715  KHEKKTYRSTSILGKIYDK----------VKAYEDMDLSSNVHESCLVKWKGLYGQYRTE 764

Query: 451  MSDALKSGDEKDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQS 272
            M +AL++G EK+  AN VI+KYK+ILY A EF  S R  EEI  +A A+Y V Y  A + 
Sbjct: 765  MRNALQAGKEKNNEANEVIKKYKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQ 824

Query: 271  NQVNKCGFAWRVAGSALMKIY-MEEQDEKPVYCLPSVLREIL 149
              V KCGFAWRVAG AL  +Y ++ Q+E+P+ C PS L+ IL
Sbjct: 825  GAVGKCGFAWRVAGLALCTLYVLKNQEERPLICSPSALKGIL 866


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  828 bits (2138), Expect = 0.0
 Identities = 445/868 (51%), Positives = 597/868 (68%), Gaps = 9/868 (1%)
 Frame = -3

Query: 2728 ALHELEFRKAFLILSYIGRNKLEEVTCVAELKDLGAVHEMGAFENRIWDRFGSRYSEKKD 2549
            AL ELEFRKAFLILSYIG N LEEV    E++ +  + +M  FE+ +W++ G +   ++D
Sbjct: 151  ALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDL-QMARFESEVWEKLGRKNISQED 209

Query: 2548 RVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIVKF-YDLDSS 2372
            R   + WDSG+ + YHC++ + G+ + KGP LN+T T LQ+ LGD+N+L+VKF  +L   
Sbjct: 210  RRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGH 269

Query: 2371 RKNYGPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNSSSGS-IKSYYVNVDSF 2195
            R +   + SY+ Y ++ +EGI VGL+ + FFVFKDGGKEEK+   S S +K Y+V ++S 
Sbjct: 270  RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESS 329

Query: 2194 ARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLNDPDVHV 2015
            A             ++H+ R +FMHV  +SS++ YM+R SLILSKT+ LEVD +   +++
Sbjct: 330  AFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSR--INI 387

Query: 2014 EVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLNDRFIERYL 1835
            E I+D PC+D +G  VY KDG+  IHTDGTG+ISE+LAL+CP   +K    ND   ER +
Sbjct: 388  ERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSI 446

Query: 1834 ---EIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRPSMIK 1664
               E+    +  ++ +    +PPLL+Q R+F+ G AVKGT+L+NKKL  + IQIRPSMIK
Sbjct: 447  DRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIK 506

Query: 1663 VEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVNEIWDAH 1484
            V+ D  LS     +S E+V TS +PRK  LSR LIALL+YGGVP  FF+ IL N + DA 
Sbjct: 507  VKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR 566

Query: 1483 NILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKSLKEGKL 1304
             + SNKR ALKV+ NYG MD ++T ARMILSGI LDEPY+Q RLSIL K E KSL+ GKL
Sbjct: 567  GVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKL 626

Query: 1303 PIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGD-VLVYRTPGVHFGDVHILKAKRVKG 1127
            P+ +S+Y+MGT DPTG L SNEVCII + GQ   + VLVYR PG+HFGD+H+LKA  VK 
Sbjct: 627  PVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKE 686

Query: 1126 LEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPTPLC 947
            LED VGTSKY IFFP NGPRSLAD++AGGDFDGDMYFVSR+P+LL  F++SE W  T   
Sbjct: 687  LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMST--- 743

Query: 946  SKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLGDEQKD 767
            SK+ S +++P +F+            L TRF P N+  +AA+ W + MD  L+LGDE  +
Sbjct: 744  SKNLSANKRPIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAE 803

Query: 766  KKLDLQNKMLRLVDIYYEALDAPKK-GKKVVVPRDLIPKKYPHFMRKADQCSYKSTSVLG 590
            +K  ++  MLRL++IYY+ALDAPKK G KV VP DL  +K+P +MR+ +  S++STSVLG
Sbjct: 804  EKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLG 863

Query: 589  EIFDKADELQ-LETPAVQVWKLPCFDIEVPLRCITSWEGHYKRYKGEMSDAL-KSGDEKD 416
             I++     + ++    ++WKLPCFD  VP  C+T W+G+Y +Y+ EM +A+ K   E++
Sbjct: 864  TIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVERE 923

Query: 415  AAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKCGFAWRV 236
             AA  VIEKYKQILYGA EFE+S R  EEI  +A+A+Y++ Y  A    QV+ C FAWRV
Sbjct: 924  EAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRV 983

Query: 235  AGSALMKIYMEEQDEKPVYCLPSVLREI 152
            AGSAL K Y   Q ++ + C  SVLREI
Sbjct: 984  AGSALRKFYARRQGDRSMLCSASVLREI 1011


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  828 bits (2138), Expect = 0.0
 Identities = 445/868 (51%), Positives = 597/868 (68%), Gaps = 9/868 (1%)
 Frame = -3

Query: 2728 ALHELEFRKAFLILSYIGRNKLEEVTCVAELKDLGAVHEMGAFENRIWDRFGSRYSEKKD 2549
            AL ELEFRKAFLILSYIG N LEEV    E++ +  + +M  FE+ +W++ G +   ++D
Sbjct: 153  ALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDL-QMARFESEVWEKLGRKNISQED 211

Query: 2548 RVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIVKF-YDLDSS 2372
            R   + WDSG+ + YHC++ + G+ + KGP LN+T T LQ+ LGD+N+L+VKF  +L   
Sbjct: 212  RRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGH 271

Query: 2371 RKNYGPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNSSSGS-IKSYYVNVDSF 2195
            R +   + SY+ Y ++ +EGI VGL+ + FFVFKDGGKEEK+   S S +K Y+V ++S 
Sbjct: 272  RSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKKKDPSTSPVKCYFVRMESS 331

Query: 2194 ARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLNDPDVHV 2015
            A             ++H+ R +FMHV  +SS++ YM+R SLILSKT+ LEVD +   +++
Sbjct: 332  AFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLILSKTMKLEVDFSR--INI 389

Query: 2014 EVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLNDRFIERYL 1835
            E I+D PC+D +G  VY KDG+  IHTDGTG+ISE+LAL+CP   +K    ND   ER +
Sbjct: 390  ERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSI 448

Query: 1834 ---EIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRPSMIK 1664
               E+    +  ++ +    +PPLL+Q R+F+ G AVKGT+L+NKKL  + IQIRPSMIK
Sbjct: 449  DRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIK 508

Query: 1663 VEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVNEIWDAH 1484
            V+ D  LS     +S E+V TS +PRK  LSR LIALL+YGGVP  FF+ IL N + DA 
Sbjct: 509  VKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDAR 568

Query: 1483 NILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKSLKEGKL 1304
             + SNKR ALKV+ NYG MD ++T ARMILSGI LDEPY+Q RLSIL K E KSL+ GKL
Sbjct: 569  GVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKL 628

Query: 1303 PIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGD-VLVYRTPGVHFGDVHILKAKRVKG 1127
            P+ +S+Y+MGT DPTG L SNEVCII + GQ   + VLVYR PG+HFGD+H+LKA  VK 
Sbjct: 629  PVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKE 688

Query: 1126 LEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPTPLC 947
            LED VGTSKY IFFP NGPRSLAD++AGGDFDGDMYFVSR+P+LL  F++SE W  T   
Sbjct: 689  LEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERWMST--- 745

Query: 946  SKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLGDEQKD 767
            SK+ S +++P +F+            L TRF P N+  +AA+ W + MD  L+LGDE  +
Sbjct: 746  SKNLSANKRPIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAE 805

Query: 766  KKLDLQNKMLRLVDIYYEALDAPKK-GKKVVVPRDLIPKKYPHFMRKADQCSYKSTSVLG 590
            +K  ++  MLRL++IYY+ALDAPKK G KV VP DL  +K+P +MR+ +  S++STSVLG
Sbjct: 806  EKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLG 865

Query: 589  EIFDKADELQ-LETPAVQVWKLPCFDIEVPLRCITSWEGHYKRYKGEMSDAL-KSGDEKD 416
             I++     + ++    ++WKLPCFD  VP  C+T W+G+Y +Y+ EM +A+ K   E++
Sbjct: 866  TIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVERE 925

Query: 415  AAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKCGFAWRV 236
             AA  VIEKYKQILYGA EFE+S R  EEI  +A+A+Y++ Y  A    QV+ C FAWRV
Sbjct: 926  EAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRV 985

Query: 235  AGSALMKIYMEEQDEKPVYCLPSVLREI 152
            AGSAL K Y   Q ++ + C  SVLREI
Sbjct: 986  AGSALRKFYARRQGDRSMLCSASVLREI 1013


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  815 bits (2105), Expect = 0.0
 Identities = 443/893 (49%), Positives = 602/893 (67%), Gaps = 8/893 (0%)
 Frame = -3

Query: 2806 APNAQALVSSTNTW--KPSGQTSGAVLAALHELEFRKAFLILSYIGRNKLEEVTCVAELK 2633
            +P  + L+SS ++   K   Q S   L AL ELEFRKAFLILSYIG  + E++    E+ 
Sbjct: 76   SPTPKHLISSPSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGDKRPEDLLSAEEIL 135

Query: 2632 DLGAVHEMGAFENRIWDRFGSRYSEKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSL 2453
             L  +  MG FE  +W+  G ++ +++DR +  DWDS + + YHC+V  DGSY  KGP L
Sbjct: 136  KLKNL-PMGVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYL 194

Query: 2452 NKTATLLQKVLGDENVLIVKFYDLDSSRKNYGPSV-SYTGYRKVEKEGICVGLKHFRFFV 2276
            NKT T LQ+VLGDEN+L+VKF +  + R +   S  S   Y K+ +EGI VGL+ +RFFV
Sbjct: 195  NKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFV 254

Query: 2275 FKDGGKEEKQNSSSGSIKSYYVNVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLS 2096
            FKDGGKEEK+ + + S+K Y+V ++S A             ++H+ RCIFMH H +SS++
Sbjct: 255  FKDGGKEEKKKNPTSSVKCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVA 305

Query: 2095 AYMARFSLILSKTITLEVDLNDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYI 1916
             YMARFSLILSKT+ L+VDL+   V+++ IDD P +D +G  VYD+D K  I TDGTG+I
Sbjct: 306  KYMARFSLILSKTVKLDVDLST--VNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFI 363

Query: 1915 SEELALRCPQNCFKGTSLNDRFIERYLEIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRA 1736
            SE+LALRCP N  +G  +N+            G S           PLLIQ R+F+ G A
Sbjct: 364  SEDLALRCPNNLCRGKYMNN------------GNSD----------PLLIQCRLFNNGCA 401

Query: 1735 VKGTVLVNKKLQGKRIQIRPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIA 1556
            VKGT+L+N+KL  + IQIRPSMIKVE DP LS    V+S EI  TS +PR+  LS+YLIA
Sbjct: 402  VKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIA 461

Query: 1555 LLNYGGVPRDFFIGILVNEIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLD 1376
            LL+YGGVP ++F+ +L + + DA ++ S+KRAAL+V++ +GEMDD+  V RMILSGIP+D
Sbjct: 462  LLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSI-VTRMILSGIPID 520

Query: 1375 EPYIQWRLSILGKVELKSLKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDV 1196
            EP++   LS +   E K L+ GKLP+ D FY+MGT DPTG+L S+EVCII + GQ +G V
Sbjct: 521  EPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRV 580

Query: 1195 LVYRTPGVHFGDVHILKAKRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYF 1016
            LVY+ PG+HFGD+H+L A  V+ LE+ VG +KY IFFP  GPRSLAD+MA  DFDGDMY+
Sbjct: 581  LVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYW 640

Query: 1015 VSRHPKLLTCFRQSEPWTPTPLCSKSTS--VSRKPSEFTAXXXXXXXXXXXLTTRFQPCN 842
            VSR+ +LL  FR SEPW    +  +ST    S++P++F+            LTTRFQ  +
Sbjct: 641  VSRNQQLLQYFRASEPW----MRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSS 696

Query: 841  SAGMAANSWLSYMDEMLSLGDEQKDKKLDLQNKMLRLVDIYYEALDAPKKGKKVVVPRDL 662
            + GMAA++WL +MD +L+L D+  D+K  L+ KML L DIYY+ALDAPK G KV V ++L
Sbjct: 697  AIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKEL 756

Query: 661  IPKKYPHFMRKADQCSYKSTSVLGEIFDKADELQLETPAV-QVWKLPCFDIE-VPLRCIT 488
              +K+PHFM +  + SY STS+LG+I+D  +  Q E  +  ++W+LP F+I+ VP  C+ 
Sbjct: 757  KAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLR 814

Query: 487  SWEGHYKRYKGEMSDALKSGDE-KDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAV 311
            SW+  Y +Y+ EM+ AL+ G E KD  A  VI KYKQILYGA EFE+SPR  E+I  +A+
Sbjct: 815  SWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEAL 874

Query: 310  AMYHVVYGCAMQSNQVNKCGFAWRVAGSALMKIYMEEQDEKPVYCLPSVLREI 152
            A+YHV Y   +   +V+ C F WRVAG AL K+Y  +  EK + C+PSVLR++
Sbjct: 875  AIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVLRQV 927


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  808 bits (2087), Expect = 0.0
 Identities = 445/905 (49%), Positives = 603/905 (66%), Gaps = 20/905 (2%)
 Frame = -3

Query: 2806 APNAQALVSSTNTW--KPSGQTSGAVLAALHELEFRKAFLILSYIGRNKLEEVTCVAELK 2633
            +P  + L+SS ++   K   Q S   L AL ELEFRKAFLILSYIG  + E++    E+ 
Sbjct: 76   SPTPKHLISSPSSTPKKARRQASSPQLVALGELEFRKAFLILSYIGELRPEDLLSAEEIL 135

Query: 2632 DLGAVHEMGAFENRIWDRFGSRYSEKKDRVKQIDWDSGRRYYYHCYVYSDGSY------- 2474
             L  +  MG FE  +W+  G ++ +++DR +  DWDS + + YHC+V  DGSY       
Sbjct: 136  KLKNL-PMGVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCIS 194

Query: 2473 -SLKGPSLNKTATLLQKVLGDENVLIVKFYDLDSSRKNYGPSV-SYTGYRKVEKEGICVG 2300
             SL GP LNKT T LQ+VLGDEN+L+VKF +  + R +   S  S   Y K+ +EGI VG
Sbjct: 195  SSLNGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVG 254

Query: 2299 LKHFRFFVFKDGGKEEKQNSSSGSIKSYYVNVDSFARFYEKQASFFDMMSMHDQRCIFMH 2120
            L+ +RFFVFKDGGKEEK+ + + S+K Y+V ++S A             ++H+ RCIFMH
Sbjct: 255  LRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESSA---------LSGKTVHEARCIFMH 305

Query: 2119 VHNLSSLSAYMARFSLILSKTITLEVDLNDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQI 1940
             H +SS++ YMARFSLILSKT+ L+VDL+   V+++ IDD P +D +G  VYD+D K  I
Sbjct: 306  AHMVSSVAKYMARFSLILSKTVKLDVDLST--VNIQRIDDEPGRDEDGHVVYDEDWKPLI 363

Query: 1939 HTDGTGYISEELALRCPQNCFKGTSLN----DRFIERYLEIVRPGTSTSQLKPDMLQPPL 1772
             TDGTG+ISE+LALRCP N  +G  +N    D    RY                    PL
Sbjct: 364  LTDGTGFISEDLALRCPNNLCRGKYMNNGNSDVCDSRY--------------------PL 403

Query: 1771 LIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRPSMIKVEPDPGLSCIPAVSSFEIVSTSIR 1592
            LIQ R+F+ G AVKGT+L+N+KL  + IQIRPSMIKVE DP LS    V+S EI  TS +
Sbjct: 404  LIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQ 463

Query: 1591 PRKPRLSRYLIALLNYGGVPRDFFIGILVNEIWDAHNILSNKRAALKVAVNYGEMDDNYT 1412
            PR+  LS+YLIALL+YGGVP ++F+ +L + + DA ++ S+KRAAL+V++ +GEMDD+  
Sbjct: 464  PRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSI- 522

Query: 1411 VARMILSGIPLDEPYIQWRLSILGKVELKSLKEGKLPIQDSFYVMGTTDPTGSLNSNEVC 1232
            V RMILSGIP+DEP++   LS +   E K L+ GKLP+ D FY+MGT DPTG+L S+EVC
Sbjct: 523  VTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVC 582

Query: 1231 IIHETGQFEGDVLVYRTPGVHFGDVHILKAKRVKGLEDIVGTSKYGIFFPTNGPRSLADK 1052
            II + GQ +G VLVY+ PG+HFGD+H+L A  V+ LE+ VG +KY IFFP  GPRSLAD+
Sbjct: 583  IILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADE 642

Query: 1051 MAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPTPLCSKSTS--VSRKPSEFTAXXXXXXXX 878
            MA  DFDGDMY+VSR+ +LL  FR SEPW    +  +ST    S++P++F+         
Sbjct: 643  MANSDFDGDMYWVSRNQQLLQYFRASEPW----MRKRSTRHVPSKRPTDFSPDELEHELF 698

Query: 877  XXXLTTRFQPCNSAGMAANSWLSYMDEMLSLGDEQKDKKLDLQNKMLRLVDIYYEALDAP 698
               LTTRFQ  ++ GMAA++WL +MD +L+L D+  D+K  L+ KML L DIYY+ALDAP
Sbjct: 699  QLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAP 758

Query: 697  KKGKKVVVPRDLIPKKYPHFMRKADQCSYKSTSVLGEIFDKADELQLETPAV-QVWKLPC 521
            K G KV V ++L  +K+PHFM +  + SY STS+LG+I+D  +  Q E  +  ++W+LP 
Sbjct: 759  KSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPL 816

Query: 520  FDIE-VPLRCITSWEGHYKRYKGEMSDALKSGDE-KDAAANNVIEKYKQILYGADEFEKS 347
            F+I+ VP  C+ SW+  Y +Y+ EM+ AL+ G E KD  A  VI KYKQILYGA EFE+S
Sbjct: 817  FNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEES 876

Query: 346  PREWEEIRFDAVAMYHVVYGCAMQSNQVNKCGFAWRVAGSALMKIYMEEQDEKPVYCLPS 167
            PR  E+I  +A+A+YHV Y   +   +V+ C F WRVAG AL K+Y  +  EK + C+PS
Sbjct: 877  PRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPS 936

Query: 166  VLREI 152
            VLR++
Sbjct: 937  VLRQV 941


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  788 bits (2036), Expect = 0.0
 Identities = 438/919 (47%), Positives = 589/919 (64%), Gaps = 9/919 (0%)
 Frame = -3

Query: 2881 SKAQALVPS-RNTWKVSEQTSGPVLQAPNAQALVSSTNTWKPSGQTSGAVLAALHELEFR 2705
            S A +  PS R+  +V ++       AP+ ++L S  N     G      L AL ELEF+
Sbjct: 95   SPANSRSPSGRHVCRVLQEEMSVDSDAPSPKSLKSEEN----GGSLHIPQLVALGELEFK 150

Query: 2704 KAFLILSYIGRNKLEEVTCVAEL---KDLGAVHEMGAFENRIWDRFGSRYSEKKDRVKQI 2534
            KAFL+LSYI   +L +VT   E+   KDL  V    A+E  +WDR G RY  + DR + +
Sbjct: 151  KAFLLLSYIPGQQLGQVTTADEIRLWKDLPMV----AYEAAVWDRLGRRYCPQTDR-RML 205

Query: 2533 DWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIVKFYDLDSSRKNYGP 2354
             WDSG+ +YY C+V  DGSY+ KGP L  T T L KVLGDENVL VKF D+  +   Y  
Sbjct: 206  QWDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKFADVPKNSSTYSN 265

Query: 2353 SVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNS-SSGSIKSYYVNVDSFARFYEK 2177
               +T Y+++ K GI +GL+ ++FFVFKDGGKEEK+   S+  +K Y++  DS A    +
Sbjct: 266  DRYFT-YKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTASCDME 324

Query: 2176 QASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLNDPDVHVEVIDDM 1997
                F   S+H+ R  FMHVH   +L+ YMARFSLILSKT TLEVD+    +  + IDD+
Sbjct: 325  NPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTG--ITFDPIDDI 382

Query: 1996 PCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLNDRFIERYLEIVRPG 1817
             C D +G  V DK+ K  IH+DGTGYISE+LA  CP N FKG  L    I+         
Sbjct: 383  HCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSENIQEACN----- 437

Query: 1816 TSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRPSMIKVEPDPGLSC 1637
                        PPLLIQFRMF+ G AVKGT L+NKKL  + +Q+RPSMIKV  DP LS 
Sbjct: 438  ----------QDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSN 487

Query: 1636 IPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVNEIWDAHNILSNKRAA 1457
                ++ E+V+TS  PR+ +LS+ L+ALL+YGG+P +FF+ IL+N + ++ +I  NK AA
Sbjct: 488  FSTFNALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAA 547

Query: 1456 LKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKSLKEGKLPIQDSFYVM 1277
            L VA+NYGEMDD    A+MIL GIPLDEP+++  LSIL K E   LK G+LP+ +S+Y+M
Sbjct: 548  LNVALNYGEMDDQ-NAAQMILVGIPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLM 606

Query: 1276 GTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILKAKRVKGLEDIVGTSKY 1097
            GT DPTG L  +EVC+I E+GQ  G+VLVYR PG+HFGD+HILKA  VK LE+ VG SKY
Sbjct: 607  GTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKY 666

Query: 1096 GIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPTPLCSKSTSVSRKP 917
             +FFP  GPRSL D++AGGDFDGDMYF+SR+P+LL  F+ SEPW      SKS S  R P
Sbjct: 667  AVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTPPSKSNS-GRAP 725

Query: 916  SEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLGDEQKDKKLDLQNKML 737
            S+ +            L   F   N  G+AA+SWL+ MD +L LGDE+ ++K +++ KML
Sbjct: 726  SQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKML 785

Query: 736  RLVDIYYEALDAPKKGKKVVVPRDLIPKKYPHFMRKADQCSYKSTSVLGEIFD--KADEL 563
            +L+DIYY+ALDAPKKG KV +P +L P  +PH+M +  +  +KSTS+LG I+D  K+   
Sbjct: 786  KLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMER--EKKFKSTSILGLIYDFVKSQTT 843

Query: 562  QLETPAVQVWKLPCFDIE-VPLRCITSWEGHYKRYKGEMSDALKSGDEKDAAANNVIEKY 386
            +  TP+ ++ KLPCF+ E V    +      Y  Y+ EM+ A+K+  +KD +AN VI++Y
Sbjct: 844  EEPTPSSEISKLPCFEDEPVSEFHMEKCRRWYDNYRSEMTQAMKT--DKDESANEVIQRY 901

Query: 385  KQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKCGFAWRVAGSALMKIY- 209
            KQ  YGA  FE S +  EE+   A+ +Y +VY  A+ +  V+KCGF W+VAG  L + Y 
Sbjct: 902  KQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIHAG-VSKCGFVWKVAGPVLCRFYL 960

Query: 208  MEEQDEKPVYCLPSVLREI 152
            M++  EK + C PSVL+E+
Sbjct: 961  MKKMQEKSLVCAPSVLKEL 979


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  763 bits (1971), Expect = 0.0
 Identities = 437/940 (46%), Positives = 602/940 (64%), Gaps = 38/940 (4%)
 Frame = -3

Query: 2857 SRNTWKVSEQTSGPVLQAPNAQALVSSTN------TWKPSGQTSGAVL--------AALH 2720
            S +T  VS   S       + Q L ++ N      T + SG  S +VL         AL 
Sbjct: 151  SPSTCSVSLHQSPSTFSVCSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALG 210

Query: 2719 ELEFRKAFLILS---YIGRNKLEEVTCVAELKDLGAVHEMGAFENRIWDRFGSRYSEKKD 2549
            ELEFRK  L+      +  N++E        + LG            W+     +SE   
Sbjct: 211  ELEFRKITLLKKRPWLLYGNQVE--------RWLG------------WELVSVTHSESLP 250

Query: 2548 R--VKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIVKFYD--L 2381
               V+ +DWD  + + YHC+V  DGS   KGP LN T T LQ+VLGD+NVL+VKF +   
Sbjct: 251  SYLVQYVDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKS 310

Query: 2380 DSSRKNYGPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQ-NSSSGSIKSYYVNV 2204
            D+   N+    S+  Y K+ ++GI +GL+ + FFVFKDGGKEEK+ N ++ ++K Y+V +
Sbjct: 311  DTPLSNHSGG-SFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRM 369

Query: 2203 DSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLNDPD 2024
            +S A   + +       ++ + R +FMH H +SS+++YMARFSLILSKTI L++DL+   
Sbjct: 370  ESDAYIDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLST-- 427

Query: 2023 VHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLNDR--- 1853
            V+V+ I D+PCKD+ G  +Y +DGK  IHTDGTG+ISE+LAL CP N FKG + +D    
Sbjct: 428  VNVQRIGDIPCKDIYGNVIY-RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLK 486

Query: 1852 -----------FIERYLEIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKK 1706
                       F  + L++  PG        ++ +PPLLIQFR+F+ G AVKGT L+NK+
Sbjct: 487  AIWQRIPAFEGFQNKTLQLTLPGL-------ELREPPLLIQFRLFYNGLAVKGTFLLNKQ 539

Query: 1705 LQGKRIQIRPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRD 1526
            L  + IQIR SMIKVE DP L      +S E+V TS  P++  LSR LIALLNYGGVPR+
Sbjct: 540  LPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPRE 599

Query: 1525 FFIGILVNEIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSI 1346
            +F+ ILV+ + D   + S+KRAAL+V++N GEMDD + VARMIL+GIPLDE Y+Q+RLS+
Sbjct: 600  YFMNILVDALKDVQGVFSSKRAALRVSINNGEMDD-FLVARMILAGIPLDESYLQYRLSV 658

Query: 1345 LGKVELKSLKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHF 1166
            L K E KSLK G+L + + +Y+MGT DPT +L S EVC+I   GQ  G VLVYR PG+HF
Sbjct: 659  LLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQINGKVLVYRNPGLHF 718

Query: 1165 GDVHILKAKRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTC 986
            GD+H+L AK V+ L  +VG +KY IFF + GPRS+AD++AGGDFDGDMY+VSR+ +LL  
Sbjct: 719  GDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEY 778

Query: 985  FRQSEPWTPTPLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSY 806
            FR  EPW P+P  S     ++KP EF+A           L+TRFQP  +  +AA++WL+ 
Sbjct: 779  FRPCEPWRPSP--STEVVTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNWLAL 836

Query: 805  MDEMLSLGDEQKDKKLDLQNKMLRLVDIYYEALDAPKK-GKKVVVPRDLIPKKYPHFMRK 629
            MD+ L LG+E+K+++  ++ K+L+L++IYY+ALDAPKK GKK+ VP+ L     PHFM +
Sbjct: 837  MDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMER 896

Query: 628  ADQCSYKSTSVLGEIFDKADELQLETPAVQVWKLPCFDIEVPLRCITSWEGHYKRYKGEM 449
                SY STS+LG+IFD A+  Q E P ++V KLPCF+ E+P      W+  Y+ Y+ +M
Sbjct: 897  GKN-SYVSTSILGQIFDTANMYQEEVPNIEVQKLPCFEEELPEYIFMKWKFLYELYRKDM 955

Query: 448  SDALK-SGDEKDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQS 272
             DA++   D K+ AA   I+KYK+ILYGA+E E SPR  EE+  +A+A+Y V Y  AM S
Sbjct: 956  VDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQEALAIYQVTYDHAM-S 1014

Query: 271  NQVNKCGFAWRVAGSALMKIYMEEQDEKPVYCLPSVLREI 152
              V  CGFAW+VAGSAL K+Y  +  E+  +CLPSV+REI
Sbjct: 1015 RSVRNCGFAWKVAGSALFKLYAIKHSERSFHCLPSVMREI 1054


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  757 bits (1954), Expect = 0.0
 Identities = 420/874 (48%), Positives = 567/874 (64%), Gaps = 13/874 (1%)
 Frame = -3

Query: 2734 LAALHELEFRKAFLILSYIGRNKLEEVTCVAEL---KDLGAVHEMGAFENRIWDRFGS-R 2567
            + AL ELEF+KAFL+LSY     L EV    E+   KDL  V    A+E  +WDR     
Sbjct: 148  ILALSELEFKKAFLLLSYFPGQSLAEVLSADEIRQWKDLPMV----AYEAAVWDRLSRLE 203

Query: 2566 YSEKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIVKFY 2387
             S+  +RV  ++WDS + +YY C+V SDGSY+ KGP L  T T L KVLGDENVL VKF 
Sbjct: 204  LSQTVERVS-LEWDSEKTHYYQCHVASDGSYTFKGPLLEPTGTHLHKVLGDENVLTVKFA 262

Query: 2386 DLDSSRKNYGPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGK-EEKQNSSSGSIKSYYV 2210
            D+  +   Y     Y+ Y+++ K GI VGL+ ++FFVFKD GK E+K++ S+  +K Y++
Sbjct: 263  DVQKNSSTYSND-RYSAYKRIAKNGIMVGLRRYQFFVFKDVGKAEKKKDFSTNGVKCYFI 321

Query: 2209 NVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLND 2030
              DS A     +A  F   ++++ R  FMHVH L SL+ YMARFSLILSKT  LEVD+  
Sbjct: 322  RTDSTAANDMGKAYIFSGKTINEARMHFMHVHTLPSLAKYMARFSLILSKTKKLEVDMTG 381

Query: 2029 PDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLNDRF 1850
              +  + I ++ C D N   V DK+ + ++H+DGTGYISE+LA  CP N FKG  L+ + 
Sbjct: 382  --ITYQEIKEIHCHDQNNNVVLDKNKEPRMHSDGTGYISEDLARMCPVNIFKGKCLSKKN 439

Query: 1849 IERYLEIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRPSM 1670
            I+          S  Q       PPLLIQFRMF+ G AVKGT L+NKKL  + +Q+RPSM
Sbjct: 440  IQE---------SCGQ------DPPLLIQFRMFYDGNAVKGTFLLNKKLPDRTVQVRPSM 484

Query: 1669 IKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVNEIWD 1490
            IKV  D  LS     +S E+V+TS  P++ +LSR L+ALL+YGGVP +FF+ +L+N + +
Sbjct: 485  IKVSKDRALSNFSTFNSLEVVTTSNPPKRTKLSRNLVALLSYGGVPNEFFLDLLLNTMEE 544

Query: 1489 AHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKSLKEG 1310
               I +NKRAALK A+N+G+MDD    A+MIL GIPLDEP+++ RLSIL  +E   LK G
Sbjct: 545  TKTIFNNKRAALKAALNHGDMDDQ-NAAQMILVGIPLDEPHLKDRLSILSNIEKNDLKAG 603

Query: 1309 KLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILKAKRVK 1130
            +LP+ +S+Y+MGT DPTG L  +EVC+I E+GQ  GDVLVYR PGVHFGD+H+LKA  VK
Sbjct: 604  RLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGDVLVYRNPGVHFGDIHVLKATYVK 663

Query: 1129 GLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPTPL 950
             LE+ VG SKY +FFP  GPRSL D++AGGDFDGDMYF+SR+P+LL  F+ SEPW     
Sbjct: 664  ALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEQFKPSEPWVSLSP 723

Query: 949  CSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLGDEQK 770
             SKS S +RKP +F+            L  RF   N  GMAA+SWL+ MD  L+LGDE+ 
Sbjct: 724  PSKSNS-TRKPIDFSPEELEEELFDMFLKARFHSSNVIGMAADSWLTIMDRFLTLGDERA 782

Query: 769  DKKLDLQNKMLRLVDIYYEALDAPKKGKKVVVPRDLIPKKYPHFMRKADQCSYKSTSVLG 590
            ++K +++ KML L+DIYY+ALDA KKG KV +P  L P  +PH+M +  +  +KSTS+LG
Sbjct: 783  EEKAEMKRKMLSLIDIYYDALDAAKKGVKVSLPDALKPDIFPHYMERDKK--FKSTSILG 840

Query: 589  EIFD--KADELQLETPAVQVWKLPCFDIEVPL------RCITSWEGHYKRYKGEMSDALK 434
             I+D  ++   +  TP+ ++ KL CF+ E P+      +C   W   Y  Y+ EM  AL 
Sbjct: 841  IIYDFVQSQTAEEHTPSSEISKLQCFEDE-PVSEFHKEKC-RPW---YDNYRAEMIQALS 895

Query: 433  SGDEKDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKC 254
            +   KD  A+ VIEKYKQ  YGA  FE S +  EE+   A+A+Y++VY  A++   V KC
Sbjct: 896  N---KDDTASEVIEKYKQEFYGAAGFEDSKKSLEELYPQALALYNIVYDYAIEMKSVRKC 952

Query: 253  GFAWRVAGSALMKIYMEEQDEKPVYCLPSVLREI 152
            GFAW+VAG  L + Y+++   K + C  S+L+E+
Sbjct: 953  GFAWKVAGPVLCRFYLKKTGGKALLCSLSMLKEL 986


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  756 bits (1953), Expect = 0.0
 Identities = 422/889 (47%), Positives = 581/889 (65%), Gaps = 14/889 (1%)
 Frame = -3

Query: 2776 TNTWKPSGQTSGAVLAALHELEFRKAFLILSYIGRNKLEEVTCVAELKDLGAVHEMGAFE 2597
            T+  +P   T  ++L AL ELEFRKAFLILSYIGR  LE     A+++ L  +  M  FE
Sbjct: 109  TSPTRPPRPTPSSLLHALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDL-PMAKFE 167

Query: 2596 NRIWDRFGSR-YSEKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVL 2420
              IW+ FG +   ++ DR    DW+SGR + Y C+V+ DG+   KGP L  T T LQK L
Sbjct: 168  KTIWEDFGEKCIYDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTL 227

Query: 2419 GDENVLIVKFYDLDSSRKNYGPSVSYTG--YRKVEKEGICVGLKHFRFFVFKDGGKEEKQ 2246
            GD+NVL+VKF + D S KN+          Y K  KEGI VGL+ +RFFVFKDGG EEKQ
Sbjct: 228  GDDNVLLVKFAE-DGSGKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQ 286

Query: 2245 NS-SSGSIKSYYVNVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNL-SSLSAYMARFSL 2072
               +S ++K Y+V + S     E         ++ + R +FMH H L  +L+ YMARFSL
Sbjct: 287  KDPTSSTVKCYFVRMQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSL 346

Query: 2071 ILSKTITLEVDLNDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRC 1892
            ILSKT+ L +DL    V V+ I D  CKD NG  + D + K +I TDGTG+IS +LAL C
Sbjct: 347  ILSKTLKLNIDLTT--VSVQKIPDEYCKDANGNIMVDNE-KPRILTDGTGFISRDLALLC 403

Query: 1891 PQNCFKGTSLNDRFIERYLEIVR-PGTSTSQLKPDML---QPPLLIQFRMFHKGRAVKGT 1724
            P N +KG++L +  I+    +V     S +  + + L   +PPLLIQ R+FH G A+KGT
Sbjct: 404  PNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGT 463

Query: 1723 VLVNKKLQGKRIQIRPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNY 1544
            +LVN+KL  + IQ+RPSMIKVE DP +  + +++S E+V+TS +P++  LS++LIALL++
Sbjct: 464  LLVNRKLPPRTIQVRPSMIKVEKDPSVH-MQSINSLEVVTTSNKPKRGYLSKHLIALLSF 522

Query: 1543 GGVPRDFFIGILVNEIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYI 1364
            GGVP +FF+ +L + + DA+++ SNKR+AL+ ++N GE D+ Y  A MIL GIPLDEP++
Sbjct: 523  GGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINCGEKDE-YNAAEMILCGIPLDEPFL 581

Query: 1363 QWRLSILGKVELKSLKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYR 1184
            +  LS   + E K L+ GKL + D FY+MGT DPTG L  N+VCIIHE  Q  GDVLVYR
Sbjct: 582  KHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYR 641

Query: 1183 TPGVHFGDVHILKAKRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRH 1004
             PG+HFGD+H + A  VK LE  VG SKYGIFFP  G RS+AD++AGGDFDGD Y+VS H
Sbjct: 642  NPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNH 701

Query: 1003 PKLLTCFRQSEPWTPTPLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAA 824
            P+LL  FR+ +PW    +   S+   +KPSEF+            L TRFQP  + GM+ 
Sbjct: 702  PQLLQYFRKGDPWIENSVPLDSS--VKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSE 759

Query: 823  NSWLSYMDEMLSLGD-EQKDKKLDLQNKMLRLVDIYYEALDAPKKGKKVVVPRDLIPKKY 647
            NSW++ MD +L+L +   +++K  ++  ML+L+DIYYEALDAPK G+KV VP DLI + +
Sbjct: 760  NSWMALMDRLLTLNNCTNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELF 819

Query: 646  PHFMRKADQCSYKSTSVLGEIFDKADELQLETPAV-QVWKLPCFDIEVPLRCITSWEGHY 470
            PH+M K    S+ STS+LG I+D+  E+ LE   V ++WKLPCFD+EVP  C+  W+  Y
Sbjct: 820  PHYMEK--DKSFTSTSILGLIYDEV-EIWLENDMVGEIWKLPCFDVEVPPSCLEKWKTKY 876

Query: 469  KRYKGEMSDALKSGDEKDA--AANNVIEKYKQILYGAD-EFEKSPREWEEIRFDAVAMYH 299
            + Y+ +M+DAL   D+  +   A  V  KYK+  YG   E E   +   +I  +A+A+Y+
Sbjct: 877  EEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYN 936

Query: 298  VVYGCAMQSNQVNKCGFAWRVAGSALMKIYMEEQDEKPVYCLPSVLREI 152
            V Y  AM   +V +CGFAW++AGSAL ++Y+ +Q+EK + C PSV+REI
Sbjct: 937  VSYEYAMLKKEVKRCGFAWKIAGSALTRLYIIKQNEKALNCDPSVVREI 985


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  756 bits (1953), Expect = 0.0
 Identities = 430/927 (46%), Positives = 585/927 (63%), Gaps = 19/927 (2%)
 Frame = -3

Query: 2875 AQALVPS-RNTWKVSEQTSGPVLQAPNAQALVSSTNTWKPSGQTSGAVLAALHELEFRKA 2699
            A +L PS R+  +V ++       AP+ ++L S        G      L AL ELEF+K 
Sbjct: 87   ANSLSPSGRHVSRVLQEEMSVDSDAPSPKSLKSEDK----GGSLHIPQLVALGELEFKKV 142

Query: 2698 FLILSYIGRNKLEEVTCVAEL---KDLGAVHEMGAFENRIWDRFGSRYSEKKDRVKQIDW 2528
            FL+LSYI    + +V    E+   KDL  V     +E  +WDR G  Y  +KDR + + W
Sbjct: 143  FLLLSYIPGQHVGQVITADEIRLWKDLPMVE----YEAAVWDRLGRHYCPQKDR-RMLQW 197

Query: 2527 DSGRRYYYHCYVYSDGSYSLK------GPSLNKTATLLQKVLGDENVLIVKFYDLDSSRK 2366
            DSG+ +YY C V  +GSY+ K      GP L  T T L KVLGD+NVL VKF D+  S  
Sbjct: 198  DSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSSS 257

Query: 2365 NYGPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNS-SSGSIKSYYVNVDSFAR 2189
             Y     +T Y+ + K GI +GL+ ++FFVFKDGGKEEK+   S+  +K Y++  DS A 
Sbjct: 258  TYSIDHYFT-YKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTA- 315

Query: 2188 FYEKQASFF-DMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLNDPDVHVE 2012
            FY+ Q  +     S+++ R  FMHVH   +L+ YMARFSLILSKT TLEVD+    +  +
Sbjct: 316  FYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTG--ITFD 373

Query: 2011 VIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLNDRFIERYLE 1832
             IDD+ C D +G  V DK+ K  IH+DGTGYISE+LA  CP N FKG  L    I+    
Sbjct: 374  QIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEAC- 432

Query: 1831 IVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRPSMIKVEPD 1652
                             PPLLIQFRMF+ G AVKGT L+NKKL  + +Q+RPSMIKV  D
Sbjct: 433  --------------YQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKD 478

Query: 1651 PGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVNEIWDAHNILS 1472
            P LS     ++ E+V+TS  P++ +LS+ L+ALL+YGG+P +FF+ IL+N + ++ +I  
Sbjct: 479  PSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFY 538

Query: 1471 NKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKSLKEGKLPIQD 1292
            NKRAAL  A+NYGEMDD    A+MIL GIPLDEP+++  LSIL K E   LK GKLP+ +
Sbjct: 539  NKRAALNAALNYGEMDDQ-NAAQMILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTE 597

Query: 1291 SFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILKAKRVKGLEDIV 1112
            S+Y+MGT DPTG+L  +EVC+I E+GQ  G+VLVYR PG+HFGD+HILKA  VK LE+ V
Sbjct: 598  SYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYV 657

Query: 1111 GTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPTPLCSKSTS 932
            G SK+ +FFP  GPRSL D++AGGDFDGDMYF+SR+P+LL  F+ SEPW      SKS S
Sbjct: 658  GNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNS 717

Query: 931  VSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLGDEQKDKKLDL 752
              R PS+ +            LT  F   N  G+AA+SWL+ MD  L LGD++ ++K ++
Sbjct: 718  -GRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEM 776

Query: 751  QNKMLRLVDIYYEALDAPKKGKKVVVPRDLIPKKYPHFMRKADQCSYKSTSVLGEIFD-- 578
            + KML L+DIYY+ALDAPKKG KV +P  L P  +PH+M +  +  ++STS+LG IFD  
Sbjct: 777  KKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIFDFV 834

Query: 577  KADELQLETPAVQVWKLPCFD----IEVPLRCITSWEGHYKRYKGEMSDALKSGDEKDAA 410
            K+   +  +P+ ++ KLPCF+     E  ++    W   Y  Y+ EM+ A+K+  +KD +
Sbjct: 835  KSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLW---YDNYRTEMTQAMKT--DKDES 889

Query: 409  ANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKCGFAWRVAG 230
            AN VI++YKQ  YGA  FE S +  EE+   A+A+Y +VY  A+ +  V+KC F W+VAG
Sbjct: 890  ANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHAG-VSKCRFVWKVAG 948

Query: 229  SALMKIYM-EEQDEKPVYCLPSVLREI 152
              L + Y+ ++  EK + C PSVL+E+
Sbjct: 949  PVLCRFYLNKKMQEKCLVCAPSVLKEL 975


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  755 bits (1949), Expect = 0.0
 Identities = 441/935 (47%), Positives = 579/935 (61%), Gaps = 10/935 (1%)
 Frame = -3

Query: 2923 PNEQCLMSSRTIMNSKAQALVPSRNTWKVSEQTSGPVLQAPNAQALVSSTNTWKPSGQTS 2744
            P E  + S RT          P++ + + S+  S   L+ P+ + +    N     G   
Sbjct: 92   PGESPVQSPRT----------PAKKSCRASQDVSLD-LETPSPKFMKREEN----GGSKY 136

Query: 2743 GAVLAALHELEFRKAFLILSYIGRNKL-EEVTC---VAELKDLGAVHEMGAFENRIWDRF 2576
               L AL ELEF+KAFL+LSYIG   L EEV     + + KDL  V    ++E  +W+R 
Sbjct: 137  IPPLLALGELEFKKAFLLLSYIGGESLVEEVISGDQIRKWKDLPMV----SYEAAVWNRL 192

Query: 2575 GSRYSEKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIV 2396
            G RY   K+R + ++ DSG  +YY C+V +DGSY  KG  L  T T L KVLGD+NVL V
Sbjct: 193  GQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTV 252

Query: 2395 KFYDLDSSRKNYGPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNS-SSGSIKS 2219
            KF D     + Y   + Y+ Y+ + K GI VGL+ +RFFVFKDGGKEEK+   S+  +K 
Sbjct: 253  KF-DKVLGVETYCNDL-YSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKC 310

Query: 2218 YYVNVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVD 2039
            Y++  DS A    +    F   SMH+ R  FMHV+ LSSL  YM+RFSLILSKT TLEVD
Sbjct: 311  YFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVD 370

Query: 2038 LNDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLN 1859
            +    +  E IDD+ C D +   V DK+GK  IH+DGTGYISE+LA  CP N FKG S+ 
Sbjct: 371  MTG--ITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMR 428

Query: 1858 DRFIE-RYLEIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQI 1682
               I+ + L     G       P   +PPLLIQFR+F+ G AVKGT L NKKL  + +Q+
Sbjct: 429  SNNIQSKNLNFEGQG-------PCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQV 481

Query: 1681 RPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVN 1502
            RPSMIKV  D  LS +   +S E+V+TS  PRK RLSR L+ALL+YGGVP DFF+ IL N
Sbjct: 482  RPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRN 541

Query: 1501 EIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKS 1322
             + ++  I  ++RAA K A+NYG  DD YT A MIL GIPLDEPY++ RLS L K E  +
Sbjct: 542  TLEESKTIFYSERAAFKAAINYG--DDQYT-ADMILVGIPLDEPYLKDRLSYLLKTERNA 598

Query: 1321 LKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILKA 1142
            LK G+ PI +S+Y+MGT DPTG L  NE+C+I  +GQ  GDVLVYR PG+HFGD+H+LKA
Sbjct: 599  LKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKA 658

Query: 1141 KRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWT 962
              VK LED VG +K+ +FFP  GPRSL D++AGGDFDGDMYF+SR+PKLL  F+ SEPW 
Sbjct: 659  TYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWV 718

Query: 961  PTPLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLG 782
             +   SK     RKPSE +            L  RF   +  GMAA+ WL  MD  L+LG
Sbjct: 719  SSSKPSK-IYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLG 777

Query: 781  DEQKDKKLDLQNKMLRLVDIYYEALDAPKKGKKVVVPRDLIPKKYPHFMRKADQCSYKST 602
            DE   +K + +  +L+L+DIYY+ALDAPKKG KV +P DL  K +PH+M +  +  ++ST
Sbjct: 778  DESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRST 837

Query: 601  SVLGEIFDKADELQL-ETPAVQVWKLPCFDIE-VPLRCITSWEGHYKRYKGEMSDALKSG 428
            S+LG IFD  D     E P  ++ KL  F+ E VP   +  +   Y+ Y+ EMS A+   
Sbjct: 838  SILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMET 897

Query: 427  D--EKDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKC 254
            D  +++   N VI++YKQ  YGA  FE S +  EE+   A+A+Y+VVY  A+Q   V KC
Sbjct: 898  DKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEG-VAKC 956

Query: 253  GFAWRVAGSALMKIYMEEQDEKPVYCLPSVLREIL 149
             FAW VAG  L K Y+++  +K V    SVL+++L
Sbjct: 957  TFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKKLL 991


>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
            arietinum]
          Length = 997

 Score =  749 bits (1935), Expect = 0.0
 Identities = 435/933 (46%), Positives = 595/933 (63%), Gaps = 16/933 (1%)
 Frame = -3

Query: 2902 SSRTIMNSKAQALVPSRNTWKVSEQTSGPVLQAPNAQALVSSTNTWKPSGQTSGAVLAAL 2723
            SS++   S++Q+   S  +  +S   S P      +Q+L SS+    P       VL AL
Sbjct: 82   SSQSQSQSQSQSRPYSLQSQLLSHLQSRPSPLPLRSQSLPSSSTAPPPHSD----VLTAL 137

Query: 2722 HELEFRKAFLILSYIGRNKLEEVTCVAELKDLGAVHEMGAFENRIWDRFGSRYSEKK-DR 2546
             ELEFRK+FL++SY GR  +E V     ++ L  +  M  FE  IW+  G +Y E+  DR
Sbjct: 138  GELEFRKSFLLMSYAGRENIENVVTAEYVRSLKEL-TMKNFEKEIWETVGQKYIERPTDR 196

Query: 2545 VKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIVKFYDLDSSRK 2366
            +  +DWDSGR + Y C+V  +GS   KGP L  T T LQK LGD+NVL+VKF +   +RK
Sbjct: 197  LVYLDWDSGRTHIYQCFVSPNGSLRFKGPILQHTRTHLQKSLGDDNVLLVKFAEDQYARK 256

Query: 2365 NY-GPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNS-SSGSIKSYYVNVDSFA 2192
            +      +   Y K  KEG+ VGL+ +RFFVFK GGKEEK+   ++ S+K Y+V  +S  
Sbjct: 257  SETSAQKAAKHYEKFGKEGLRVGLRLYRFFVFKVGGKEEKKKDPTTSSVKCYFVRTESSC 316

Query: 2191 RFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLNDPDVHVE 2012
               E+++      +M + R +FMH H L ++  YMARFSLILSKT  L VD     V V+
Sbjct: 317  STDERESYILSNRTMFESRSLFMHAHMLPNIDKYMARFSLILSKTYKLNVDWTT--VSVK 374

Query: 2011 VIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLNDRFIERYLE 1832
             I D+ C+D +G  VY  + K  I TDGTG+ISE+LA+ CP N  KG++L +  I+    
Sbjct: 375  TIPDVCCQDEHGNTVYHNE-KRCILTDGTGFISEDLAVLCPNNVLKGSNLKNTHIKEISN 433

Query: 1831 IVRPGTSTSQLKPDML---QPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRPSMIKV 1661
            +V+    +  +    L   QPPLLIQ R+FH G A+KGT+LVNKKL    IQ+RPSMIKV
Sbjct: 434  LVKLEDMSKAMGEAALSKHQPPLLIQCRLFHMGCAMKGTLLVNKKLSPSTIQVRPSMIKV 493

Query: 1660 EPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVNEIWDAHN 1481
              DP LS I +++S E+V+TS +P +  LS+YLIALL+YG VP +FF+ +L + + DA +
Sbjct: 494  MTDPSLSNIQSLNSMEVVNTSHKPNRAYLSKYLIALLSYGRVPNEFFMDVLKSNLEDAGH 553

Query: 1480 ILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKSLKEGKLP 1301
            I +NKRAAL+ ++NY EMDD +  A MIL GIPLDEP++Q  LS L K+E   L+ GKL 
Sbjct: 554  IYTNKRAALRASLNYAEMDD-FNAAGMILCGIPLDEPFLQHYLSKLVKLEKNKLRTGKLY 612

Query: 1300 IQDSFYVMGTTDPTGS--LNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILKAKRVKG 1127
            ++D FY+MGT DPT    L +N+VCIIHE GQ  GDVLVYR PG+HFGD+HI++A  V+G
Sbjct: 613  VEDCFYLMGTVDPTEGHCLEANQVCIIHENGQITGDVLVYRNPGLHFGDIHIMQATYVEG 672

Query: 1126 LEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPTPLC 947
            LE  VG  KY IFFP  GPRS+AD++AGGDFDGDMY+VS++P+LL CFR+S+PW  +P C
Sbjct: 673  LESYVGHGKYAIFFPCVGPRSVADEIAGGDFDGDMYWVSKNPQLLECFRKSDPWMESPPC 732

Query: 946  SK---STSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSL-GD 779
            +    S+SV  KPSE              L TRFQ  ++ G+AA+SW++ MD +L+L  D
Sbjct: 733  NPVILSSSVI-KPSE-------EELFKLYLQTRFQSSSAIGIAADSWMALMDRLLTLRND 784

Query: 778  EQKDKK-LDLQNKMLRLVDIYYEALDAPKK-GKKVVVPRDLIPKKYPHFMRKADQCSYKS 605
              K+K+ L ++  +L+L+DIYYEALDAPKK G K+ VP DL  + +PH+M + D  S+ S
Sbjct: 785  ITKEKEVLQVKENILKLIDIYYEALDAPKKGGGKIQVPEDLTVELFPHYMER-DGKSFTS 843

Query: 604  TSVLGEIFDKADELQL-ETPAVQVWKLPCFDIEVPLRCITSWEGHYKRYKGEMSDALKSG 428
            TS+LG I+D+    Q  +    ++ KLPC D+E+P+ C+  WE  YK Y+ +MS A +S 
Sbjct: 844  TSILGLIYDEVCRWQTSDMSGTKIRKLPCLDVEIPMHCVEKWETLYKEYRTDMSFACQSN 903

Query: 427  DEKDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKCGF 248
             +++AA   VI+KYKQ    A   E   +   +I  +A+A+YHV Y  A+Q N V KC F
Sbjct: 904  SKEEAA--EVIKKYKQKFDVAANIEDCSKNVTDIYHEALAVYHVTYDYAIQWNDVAKCAF 961

Query: 247  AWRVAGSALMKIYMEEQD-EKPVYCLPSVLREI 152
            AW+VAG AL     E Q   K + C  SVLREI
Sbjct: 962  AWKVAGPALTNYCAENQSHSKCLPCSSSVLREI 994


>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
            gi|548857326|gb|ERN15132.1| hypothetical protein
            AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  749 bits (1933), Expect = 0.0
 Identities = 408/869 (46%), Positives = 562/869 (64%), Gaps = 9/869 (1%)
 Frame = -3

Query: 2728 ALHELEFRKAFLILSYIGRNKLEEVTCVAEL---KDLGAVHEMGAFENRIWDRFGSRYSE 2558
            AL ELEFRKAFLIL+YIG+ ++++V  + ++   KDL     M  FE  +W   G RY+ 
Sbjct: 130  ALGELEFRKAFLILNYIGKQRIDDVLSIEKIRTWKDLS----MQCFEYEVWRTVGERYAS 185

Query: 2557 KKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIVKFYD-- 2384
            + DR + +DWDSG+   Y C+V   G++S KGP L  T T L++VLGD+ VL VKF +  
Sbjct: 186  QTDR-RNLDWDSGKAENYQCHVDPVGNFSFKGPFLESTQTHLRRVLGDDKVLTVKFAEEM 244

Query: 2383 LDSSRKNYGPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQ-NSSSGSIKSYYVN 2207
            +D  R  +  S S   +R++ K+GI VGL+ + FFVFKDGGKEEK+ N+++  +K Y+V 
Sbjct: 245  VDERRGEFNLSRSKNIFRRIAKDGILVGLRRYHFFVFKDGGKEEKRKNANTTGVKCYFVC 304

Query: 2206 VDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLNDP 2027
            + S A             ++ + R +FM VH + +L+ YMARFSLILSKTI LEVDL   
Sbjct: 305  MKSDAESDMHTPYILSNKTIQEARSMFMDVHTVPNLAKYMARFSLILSKTIKLEVDLGS- 363

Query: 2026 DVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLNDRFI 1847
             V++E I+D PC D +   VYD++G+  IHTDGTG+ISE+L  +  +N FK   L  + +
Sbjct: 364  -VNIERINDKPCLDNHNEIVYDQNGQCLIHTDGTGFISEDLMSKFSKNIFKERYLKQKKV 422

Query: 1846 ERYL---EIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRP 1676
            E  L   E+        ++K       LLIQFR+F+ G AVKGTVLVNK L    IQ+RP
Sbjct: 423  ETCLNGMELNAKSVLDEEIKYVSGDLHLLIQFRLFYDGCAVKGTVLVNKLLPPNTIQVRP 482

Query: 1675 SMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVNEI 1496
            SM+KVE D   S +P+ +SFE+V TS RPR   LSRYLI LL++GGVP+  F+ ++   +
Sbjct: 483  SMVKVERDTDFSRLPSFNSFEMVGTSNRPRGAALSRYLITLLSHGGVPKSCFMFLIQAAL 542

Query: 1495 WDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKSLK 1316
             D  N+  +K+ AL  AV Y E+ DN  VARMI  G+PL+EPY+Q RLSIL K E K LK
Sbjct: 543  DDVQNVRYSKKLALTAAVKYQEISDNLLVARMIFCGLPLEEPYLQHRLSILMKEERKGLK 602

Query: 1315 EGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILKAKR 1136
            EGK+ + +S+Y+MGT DPTG L  NEVCII + GQ  G VLVYR PG+HFGD+H+  A  
Sbjct: 603  EGKVLLPNSYYLMGTADPTGKLKGNEVCIILDHGQISGKVLVYRHPGLHFGDIHVFTATY 662

Query: 1135 VKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPT 956
            ++ L +IVG +K+ IFF T GPRS AD++A GDFDGDMY++S +P+LL  F+   PW  +
Sbjct: 663  IEDLVEIVGNAKFAIFFSTQGPRSAADEIANGDFDGDMYWISTNPELLHYFKAGPPWERS 722

Query: 955  PLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLGDE 776
               S+     RKP E++            L +RF P  +   AA+SWL YMD +L+LGDE
Sbjct: 723  --SSEKPPPQRKPIEYSPDELETELFDLFLESRFHPSIAKCAAADSWLVYMDRLLTLGDE 780

Query: 775  QKDKKLDLQNKMLRLVDIYYEALDAPKKGKKVVVPRDLIPKKYPHFMRKADQCSYKSTSV 596
              ++K  L  KML+L D+YYEA+DAPK GKKV VP+DL P++YPHFM +  Q  Y STS+
Sbjct: 781  CAEEKGCLHQKMLKLADLYYEAVDAPKSGKKVEVPKDLKPERYPHFMERTYQ--YTSTSI 838

Query: 595  LGEIFDKADELQLETPAVQVWKLPCFDIEVPLRCITSWEGHYKRYKGEMSDALKSGDEKD 416
            LG+I+D     Q++ P   +  LPCF  EV    +  W+G Y +Y+ EM+ AL S D+K 
Sbjct: 839  LGQIYDLVASAQMDVPCEDIELLPCFLEEVEPSGMEKWKGLYAQYRDEMNKALSSTDQKK 898

Query: 415  AAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKCGFAWRV 236
            + A+ VI+ YK+ILYGA E+E+  R  EEI  +A  +Y + Y  A + + + KCGFAW+V
Sbjct: 899  SNADEVIQNYKKILYGAQEYEERTRPREEIFREACEIYAISYFYAKEKSDIAKCGFAWKV 958

Query: 235  AGSALMKIYMEEQDEKPVYCLPSVLREIL 149
            AG AL +++  +Q +  + CL SVL+E+L
Sbjct: 959  AGCALCELHALKQKKNSITCLSSVLQELL 987


>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
            gi|482565615|gb|EOA29804.1| hypothetical protein
            CARUB_v10012898mg [Capsella rubella]
          Length = 982

 Score =  749 bits (1933), Expect = 0.0
 Identities = 427/923 (46%), Positives = 584/923 (63%), Gaps = 13/923 (1%)
 Frame = -3

Query: 2881 SKAQALVPS-RNTWKVSEQTSGPV-LQAPNAQALVSSTNTWKPSGQTSGAVLAALHELEF 2708
            S AQ   PS R+  +V +Q    V   AP++++L          G      L AL ELEF
Sbjct: 98   SSAQPRSPSGRHVCRVLDQDEMSVDSDAPSSKSLQRED----VGGTLHIPQLVALGELEF 153

Query: 2707 RKAFLILSYIGRNKLEEVTCVAEL---KDLGAVHEMGAFENRIWDRFGSRYSEKKDRVKQ 2537
            +KAFL+LSYI   +L EV    E+   KDL  V    A+E  +WD  G ++  + D  + 
Sbjct: 154  KKAFLLLSYIPGQRLGEVVTAEEIRRWKDLPMV----AYEAAVWDSLGRKFCPQTDE-RV 208

Query: 2536 IDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIVKFYDLDSSRKNYG 2357
            + WDSG+ +YY C+V  DGSY+ KGP L  T T L KVLGDENVL VKF ++  +   Y 
Sbjct: 209  LQWDSGKTHYYQCHVAPDGSYTFKGPLLESTGTHLHKVLGDENVLTVKFANVQKNSSTYC 268

Query: 2356 PSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQNS-SSGSIKSYYVNVDSFARFYE 2180
             S SY  Y+ + K GI VGL+ ++FFVFKDGGK++K    S+   K Y++  DS A    
Sbjct: 269  -SDSYFTYKGIAKNGIMVGLRRYKFFVFKDGGKDDKNKDVSTKRAKCYFIRTDSTASIDM 327

Query: 2179 KQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLNDPDVHVEVIDD 2000
            ++   F   S+H+ R  FMHVH L SL+ YMARFSLILSKT  LEVDL    V+ E+I D
Sbjct: 328  EKPYIFSGKSIHEARMHFMHVHTLPSLANYMARFSLILSKTKKLEVDLTG--VNFEIIKD 385

Query: 1999 MPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLNDRFIERYLEIVRP 1820
            +PC D +G  V DK+ K +IH+DGTGYISE+LA  CP N +KG  L    I+        
Sbjct: 386  IPCHDQDGKDVLDKNKKPRIHSDGTGYISEDLAQMCPVNIYKGKCLRSDKIKE------- 438

Query: 1819 GTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRPSMIKVEPDPGLS 1640
              +  Q      +PPLLIQFRMF+ G A+KGT L+NKK+  + +Q+RPSMIKV PD  L 
Sbjct: 439  --ACGQ------EPPLLIQFRMFYNGYAIKGTFLLNKKIPSRTVQVRPSMIKVLPD-SLP 489

Query: 1639 CIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVNEIWDAHNILSNKRA 1460
             I   ++ E+V+TS  P++ +LSR L+ALL+YGG+P +FF+ IL N + ++  I  NKRA
Sbjct: 490  NISTFNTLEVVNTSFPPKRTKLSRNLVALLSYGGIPDEFFLDILHNTLEESKAIFYNKRA 549

Query: 1459 ALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKSLKEGKLPIQDSFYV 1280
            AL  A++YGEMDD    A+MIL+GIPLDEP+++  LS   K E   LK G+LP+ +S+Y+
Sbjct: 550  ALNAALSYGEMDDQ-NAAQMILAGIPLDEPHLKTCLSSFLKREKNDLKAGRLPVTESYYL 608

Query: 1279 MGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILKAKRVKGLEDIVGTSK 1100
            MGT DPTG L  +EVC+I E+GQ  G+VLVYR PG+HFGD+H+LKA  VK LE+ VG SK
Sbjct: 609  MGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHVLKATYVKALEEYVGNSK 668

Query: 1099 YGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPTPLCSKSTSVSRK 920
            + +FFP  GPRSL D++AGGDFDGD+YF+SR+P+LL  F+ SEPW      SKS S +R 
Sbjct: 669  FAVFFPQKGPRSLGDEIAGGDFDGDIYFISRNPELLEHFKPSEPWVSLTPPSKSNS-ARG 727

Query: 919  PSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLGDEQKDKKLDLQNKM 740
            P +F+            L   F   N  GMAA+SWL+ MD  L LGDE  D+K +++ KM
Sbjct: 728  PCQFSPEELEEELFEMFLKAGFHASNVIGMAADSWLTIMDRFLILGDESADEKAEMKQKM 787

Query: 739  LRLVDIYYEALDAPKKGKKVVVPRDLIPKKYPHFMRKADQCSYKSTSVLGEIFD--KADE 566
            L L+DIYY+ALDAPKKG KV +P +L P  +PH+M +  +  +KSTS+LG I+D  ++  
Sbjct: 788  LELIDIYYDALDAPKKGAKVYLPNELRPDIFPHYMERDKK--FKSTSILGLIYDFVQSQT 845

Query: 565  LQLETPAVQVWKLPCFD----IEVPLRCITSWEGHYKRYKGEMSDALKSGDEKDAA-ANN 401
             +  +P  ++ KLPCF+     E  ++    W   Y  YK EM+ A+ +    DA+  N 
Sbjct: 846  TKQPSPPSEINKLPCFEDEPVSEFHMKECRRW---YDEYKDEMTHAMNT----DASNKNE 898

Query: 400  VIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKCGFAWRVAGSAL 221
            +IE+ K+  YGA  FE+S +  EE+   A+A+Y++VY  A  +  V++CGF W+VAG  L
Sbjct: 899  IIERCKEDFYGAASFEESKKSLEELYPQALALYNIVYDHATHAG-VSRCGFVWKVAGPVL 957

Query: 220  MKIYMEEQDEKPVYCLPSVLREI 152
             + Y++++ EK +   PSVL+EI
Sbjct: 958  CRFYLKKRHEKTLVSSPSVLKEI 980


>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
          Length = 798

 Score =  748 bits (1931), Expect = 0.0
 Identities = 410/828 (49%), Positives = 539/828 (65%), Gaps = 7/828 (0%)
 Frame = -3

Query: 2611 MGAFENRIWDRFGSRYSEKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTA-TL 2435
            M  FE  +W+  G  Y     R    DWDSG+ Y YHC V  DGSY  KGP LN T  TL
Sbjct: 1    MQLFETTVWEALGRNYIGT--RHPTFDWDSGKTYVYHCEVSVDGSYKFKGPCLNNTKRTL 58

Query: 2434 LQKVLGDENVLIVKFYDLDSSRKNYG-PSVSYTGYRKVEKEGICVGLKHFRFFVFKDGG- 2261
            LQKVLGD+NVL+VKF D+ + R        +Y  Y KV +EGI VGL+ ++FFVFKDGG 
Sbjct: 59   LQKVLGDDNVLMVKFSDVVTERVPTAIKDNNYANYSKVAREGILVGLRRYQFFVFKDGGN 118

Query: 2260 KEEKQNSSSGSIKSYYVNVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMAR 2081
            KE+K+N +S  +K Y++ V S A     +   F    +H+ RCIFMH H +SS+S YMAR
Sbjct: 119  KEKKKNPTSSPVKCYFICVGSNAAIDRSEDYKFSNRKIHETRCIFMHAHTVSSVSNYMAR 178

Query: 2080 FSLILSKTITLEVDLNDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELA 1901
            FSLILSKT +LEVD +   V VE IDD  C D +G  + D+DGK  IHTDGTG+ISE+LA
Sbjct: 179  FSLILSKTESLEVDWSL--VKVEDIDDEYCLDESGNRI-DRDGKPLIHTDGTGFISEDLA 235

Query: 1900 LRCPQNCFKGTSLNDRFIERYLEIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTV 1721
            L CP++  K   ++  +IE                      PLL+QFR+F+KGRAVKGT 
Sbjct: 236  LLCPKDLLKRDYISKEYIE----------------------PLLLQFRLFYKGRAVKGTF 273

Query: 1720 LVNKKLQGKRIQIRPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYG 1541
            L+NK L  K IQIRPSM+KVE DP +S    V+S EIV+ S   R    SR+LIALL +G
Sbjct: 274  LINKTLPPKTIQIRPSMVKVETDPMISDDQTVNSLEIVTVSKSHRNTFFSRHLIALLCHG 333

Query: 1540 GVPRDFFIGILVNEIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQ 1361
            GVP+++F  +L+ ++ D   +  ++RAA KVA N+GE+DD+Y   +MILSGIPL+E Y+Q
Sbjct: 334  GVPKEYFRELLMKDLEDTRGVFCSRRAAFKVAYNHGEIDDDYNSVKMILSGIPLEESYLQ 393

Query: 1360 WRLSILGKVELKSLKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRT 1181
            +RLSIL K E KSL++GK+    S+ +MGT DPTG L  +EVCII ++GQ  G VLVYR 
Sbjct: 394  YRLSILKKEENKSLQKGKICSPQSYMLMGTADPTGILERDEVCIILDSGQMSGQVLVYRH 453

Query: 1180 PGVHFGDVHILKAKRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHP 1001
            PG+HFGD+H+LKA+ VK LE +VG +KY IFF   GPRS+AD+M GGDFDGD+Y+VSR+P
Sbjct: 454  PGLHFGDIHLLKARYVKELEYVVGNAKYAIFFSCKGPRSVADEMGGGDFDGDLYWVSRNP 513

Query: 1000 KLLTCFRQSEPWTPTPLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAAN 821
            +LL CF+ SEPW      S     S +PSE              L TRF+P  +   A++
Sbjct: 514  QLLECFKPSEPWIEAS-SSTPKVASTRPSELLPNHIEDALIKLFLKTRFEPSFAMSEASD 572

Query: 820  SWLSYMDEMLSLGDEQKDKKLDLQNKMLRLVDIYYEALDAPKKGKKVVVPRDLIPKKYPH 641
            SWL+ MD +L LGD    +K  ++  MLRLVD+YYEALDAPKKG KVVVP +L    +PH
Sbjct: 573  SWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYYEALDAPKKGGKVVVPGELKSNLFPH 632

Query: 640  FMRKADQCSYKSTSVLGEIFDKADELQLETPAV-QVWKLPCFDIEVPLRCITSWEGHYKR 464
            +M + +  SYKSTS+LG I+D  +  Q E  ++ +V KLP FD+EVP  C+  W  HY+ 
Sbjct: 633  YMERVN--SYKSTSILGLIYDTVNAYQAEDASIKEVKKLPMFDVEVPEECLKKWREHYQH 690

Query: 463  YKGEMSDALKSG--DEKDAAANNVIEKYKQILY-GADEFEKSPREWEEIRFDAVAMYHVV 293
            Y+ EMS A++    D K+ AA+ V+ KYK+ILY GA++ E S R   EI  +A+A+Y V 
Sbjct: 691  YRSEMSSAMQDDDRDSKNNAADKVLRKYKEILYGGAEDLENSTRPLHEIFDEALAIYRVT 750

Query: 292  YGCAMQSNQVNKCGFAWRVAGSALMKIYMEEQDEKPVYCLPSVLREIL 149
            Y  A+    V KC FAW+VAGSAL K YM +Q  + +    SVL++++
Sbjct: 751  YDHAISQGAVGKCCFAWKVAGSALCKYYMNKQGARTIEASFSVLKDLV 798


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  743 bits (1919), Expect = 0.0
 Identities = 426/876 (48%), Positives = 570/876 (65%), Gaps = 12/876 (1%)
 Frame = -3

Query: 2740 AVLAALHELEFRKAFLILSYIGRNKLEEVT---CVAELKDLGAVHEMGAFENRIWDRFGS 2570
            A LAAL ELE+R+ FLILSY G  KL ++     +   KDL  V     FE+ +W+  G 
Sbjct: 546  AHLAALGELEYRRQFLILSYAGGMKLRDLIVAEAIRHWKDLPMV----MFESTVWEHLGR 601

Query: 2569 RYSEKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLKGPSLNKTA-TLLQKVLGDENVLIVK 2393
            +    +DR    DWDSG  + YHCYV  DGSY  KGP L K   TLLQK LGD+NVL+VK
Sbjct: 602  KCISTEDRRLYFDWDSGSTHVYHCYVNVDGSYRFKGPYLYKIRRTLLQKELGDDNVLMVK 661

Query: 2392 FYDLDSSRKNYGPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKEEKQ-NSSSGSIKSY 2216
            F   +  R   G   +Y  Y KV +EGI VGL+ +RFFVFKDGG EEK+ N +S  +K Y
Sbjct: 662  FAKEEVQRGQSGACHNYPTYMKVAREGILVGLRRYRFFVFKDGGNEEKKKNPTSSPVKCY 721

Query: 2215 YVNVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDL 2036
            +V V S A   +        M+M++ RC+FMH H L+S+  YMARFSLILSKT++L+ D 
Sbjct: 722  FVRVASDAAIDKGVYYRLSHMTMYEARCLFMHAHTLASIDNYMARFSLILSKTMSLKADW 781

Query: 2035 NDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSLND 1856
            +   V VE+ID+  C D +G  +Y +D K  IHTDGTG+ISE+LAL CP+   KG  ++D
Sbjct: 782  SL--VKVEIIDEEYCLDESGNCIY-RDEKPLIHTDGTGFISEDLALLCPKIEAKGQWISD 838

Query: 1855 RFIERYL---EIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQ 1685
              ++      E+   G + + L+ +  +PPLLIQ R+FH G A KGT+LVNKKLQ  RIQ
Sbjct: 839  EHMKGLPDPDELDDTGKNRAGLRTE--EPPLLIQCRLFHNGSASKGTLLVNKKLQPNRIQ 896

Query: 1684 IRPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILV 1505
            IRPSM+KV+ DP +S    ++S EIV TS  PR   LSR LIALL +GGVP +FF+ IL 
Sbjct: 897  IRPSMLKVKTDPVISNNQTLNSLEIVGTSTPPRNTHLSRILIALLVHGGVPEEFFMQILN 956

Query: 1504 NEIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELK 1325
              + D+H +   KRAALKVA  YGEMDDN+    MI  GIPL+E Y+++RLS+L K E  
Sbjct: 957  KALEDSHGVFCKKRAALKVAEKYGEMDDNFLGRLMISFGIPLEESYLRYRLSVLMKEENN 1016

Query: 1324 SLKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILK 1145
            SL++G+L I DS+ +MGT DPTG+L  +EVC     GQ  G VLVYR PG+H GD+H+LK
Sbjct: 1017 SLRKGRLYIPDSYNLMGTADPTGTLKEDEVC----DGQLSGKVLVYRYPGLHIGDIHVLK 1072

Query: 1144 AKRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPW 965
            A  VK +E IVG +KYGIFF   GPRS+AD+M GGDFDGD+Y+VSR+P+LL  ++ SEPW
Sbjct: 1073 ATYVKEIEYIVGNAKYGIFFSCKGPRSIADEMGGGDFDGDLYWVSRNPQLLEWYKPSEPW 1132

Query: 964  TPTPLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSL 785
                + +K  + SR PS+ +            LTTRF+P  +   AA++WL++MD  L+L
Sbjct: 1133 IEASISTKK-NPSRCPSDHSPEDLEDVLFRSFLTTRFEPSFAMSEAADNWLAWMDHFLTL 1191

Query: 784  GDEQKDKKLDLQNKMLRLVDIYYEALDAPKKGKKVVVPRDLIPKKYPHFMRKADQCSYKS 605
            GD    +K +++ K+L+LVD+YY ALDA KKG KV VP++L    +PH+M K    SY S
Sbjct: 1192 GDSNIHEKNNVKEKILQLVDLYYTALDAAKKGVKVDVPKELKVSCFPHYMGK--NRSYPS 1249

Query: 604  TSVLGEIFDKADELQLETPAV-QVWKLPCFD-IEVPLRCITSWEGHYKRYKGEMSDALKS 431
            TS+LG I+++ DE Q E  ++ +V KLP FD  EVP  C+  W   +++Y+ EM+ AL  
Sbjct: 1250 TSILGSIYNRVDEHQTEDRSLKEVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALDD 1309

Query: 430  GDE--KDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNK 257
             D+  K+ +A+ VI KY++ILY A++FE+S R  EEI  +A A+YHV Y  A +   V  
Sbjct: 1310 DDKQSKNQSADVVIRKYRKILYEANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVKV 1369

Query: 256  CGFAWRVAGSALMKIYMEEQDEKPVYCLPSVLREIL 149
            C FAWRVAG AL +++    +E+    + SVL EIL
Sbjct: 1370 CSFAWRVAGKALCQLHARNNNERFCTIVSSVLMEIL 1405


>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
            gi|482565607|gb|EOA29796.1| hypothetical protein
            CARUB_v10012890mg [Capsella rubella]
          Length = 998

 Score =  734 bits (1895), Expect = 0.0
 Identities = 418/874 (47%), Positives = 546/874 (62%), Gaps = 13/874 (1%)
 Frame = -3

Query: 2734 LAALHELEFRKAFLILSYIGRNKLEEVTC--VAELKDLGAVHEMGAFENRIWDRFGSRYS 2561
            L AL ELEF+K FL+LSY+G   LE ++   + + KDL  V    ++E  +W + G RY 
Sbjct: 149  LVALGELEFKKMFLLLSYLGGKPLEVISGDDIRQWKDLPMV----SYEAEVWFQLGERYC 204

Query: 2560 EKKDRVKQIDWDSGRRYYYHCYVYSDGSYSLK------GPSLNKTATLLQKVLGDENVLI 2399
             KK+R + ++ DS + +YY C+V +DGSY  K      G  L  T T L KVLGD+NVL 
Sbjct: 205  SKKERRRSLEGDSEKTHYYQCHVATDGSYKFKVGSPNSGHLLENTGTHLHKVLGDDNVLT 264

Query: 2398 VKFYDLDSSRKNYGPSVSYTGYRKVEKEGICVGLKHFRFFVFKDGGKE-EKQNSSSGSIK 2222
            VKF D+  +  N      Y+ Y  + K GI VGL+ ++FFVFKDGGKE +K++ S   +K
Sbjct: 265  VKFDDMSCTETNCNNL--YSTYEGIAKNGIMVGLRRYQFFVFKDGGKEGKKKDFSRQGVK 322

Query: 2221 SYYVNVDSFARFYEKQASFFDMMSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEV 2042
             Y++   S A    +     D MS+H+ R  FMHV+NL S + YMARFSLILSKT  LE+
Sbjct: 323  CYFIRTGSTALSDMENPYILDGMSIHEARMHFMHVYNLPSPANYMARFSLILSKTKKLEM 382

Query: 2041 DLNDPDVHVEVIDDMPCKDVNGLHVYDKDGKLQIHTDGTGYISEELALRCPQNCFKGTSL 1862
            D+    +  E IDD+ C D +   V DK+GK  IH+DGTGYISE+LA  CP N FKG S+
Sbjct: 383  DMTG--ITFEKIDDIHCHDQDNHDVLDKNGKPCIHSDGTGYISEDLARMCPINIFKGKSI 440

Query: 1861 NDRFIERYLEIVRPGTSTSQLKPDMLQPPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQI 1682
                I+        GT           PPLLIQFRMF+KG AVKGT L NKKL  + +Q+
Sbjct: 441  RSNNIK--------GTCGED-------PPLLIQFRMFYKGYAVKGTFLSNKKLPPQTVQV 485

Query: 1681 RPSMIKVEPDPGLSCIPAVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVN 1502
            RPSMIKV  D  L      +S E+V+TS  P+  RLSR LIALL+YGGVP DFF+ IL  
Sbjct: 486  RPSMIKVYEDQALLNFSTFNSLEVVNTSNPPKMTRLSRNLIALLSYGGVPNDFFLNILRK 545

Query: 1501 EIWDAHNILSNKRAALKVAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKS 1322
             + ++  I  ++RAA+K A+NYG+MDD  T A MIL  IPLDEP+++ RLSIL K E  +
Sbjct: 546  TLEESKTIFYSERAAIKAAINYGDMDDQNT-AEMILVDIPLDEPHLKDRLSILLKTEKNA 604

Query: 1321 LKEGKLPIQDSFYVMGTTDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILKA 1142
            LKEG+LPI +S+Y+MGT DPTG L  NEVC+I ETGQ  G+VLVYR PG+HFGD+H+LKA
Sbjct: 605  LKEGRLPIGESYYLMGTVDPTGELKENEVCVILETGQISGNVLVYRNPGLHFGDIHVLKA 664

Query: 1141 KRVKGLEDIVGTSKYGIFFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWT 962
              VK LED VG SKY +FFP  GPRSL D++AGGDFDGDMYF+SR+P+LL  F+ SEPW 
Sbjct: 665  TYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPQLLEHFKPSEPWV 724

Query: 961  PTPLCSKSTSVSRKPSEFTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLG 782
             +   SK  S  RKPSE +            L  RF   +  GMAA+SWL+ MD  LSLG
Sbjct: 725  SSSKPSKVYS-GRKPSELSHEELEEELFKLFLDARFCKRDVIGMAADSWLAIMDRFLSLG 783

Query: 781  DEQKDKKLDLQNKMLRLVDIYYEALDAPKKGKKVVVPRDLIPKKYPHFMRKADQCSYKST 602
            DE   KK      +L+L+DIYY+ALDAPKKG KV +P  L    +PH+M    +  + ST
Sbjct: 784  DESAKKKHKSNKNLLKLIDIYYDALDAPKKGAKVDLPPGLQVGTFPHYMEHKKK-KFTST 842

Query: 601  SVLGEIFDKADELQLE-TPAVQVWKLPCFDIE-VPLRCITSWEGHYKRYKGEMSDALKSG 428
            S+LG IFD  +    E  P  ++ KL C + E VP   +      Y+ YK +MS A+K  
Sbjct: 843  SILGLIFDTVESQNAEIPPPSKISKLACLEDEPVPKSYMEKCRPWYEDYKADMSQAMKET 902

Query: 427  DE--KDAAANNVIEKYKQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKC 254
            DE  K+   N VI++YKQ  YGA  FE S    EE+   ++A++++ Y  A++ N V  C
Sbjct: 903  DENKKNQLTNEVIQRYKQDFYGAAGFEDSKISLEELYPKSLALHNIAYDYAIEKNDVRCC 962

Query: 253  GFAWRVAGSALMKIYMEEQDEKPVYCLPSVLREI 152
            GF WRVAG  L K Y ++  ++ +    SVL+ +
Sbjct: 963  GFVWRVAGPVLCKFYAKKTQDRSLVASASVLKRL 996


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  728 bits (1879), Expect = 0.0
 Identities = 418/923 (45%), Positives = 583/923 (63%), Gaps = 30/923 (3%)
 Frame = -3

Query: 2827 TSGPVLQAPNAQALVSS---------TNTWKPSGQTSGAV--LAALHELEFRKAFLILSY 2681
            TS P + +P    + +S          +T++    T G    L AL +LEFRK FLIL+Y
Sbjct: 202  TSAPRIPSPPMSPVTTSFQRDHYDPRPSTFRDRASTRGISEQLLALSKLEFRKFFLILNY 261

Query: 2680 IGRNKLEEVTCVAELKD-LGAVHE-MGAFENRIWDRFGSRYSEKKDRVKQIDWDSGRRYY 2507
            IGR K+E+V  + ++ D L  +++ M  FE+ IW+++G    E   RV+ +DWDSGR + 
Sbjct: 262  IGRRKVEDVIMLHDVGDILDMIYQPMSHFESYIWNKYG-HLCEHNKRVQYLDWDSGRTHL 320

Query: 2506 YHCYVYSDGSYSLKGPSLNKTATLLQKVLGDENVLIVKFYDLDSSRKNYGPSVSYTGYRK 2327
            YHC+V+SDGSY+ KGP L    T LQ+ LGDENVLIVKF       +   P        +
Sbjct: 321  YHCHVHSDGSYTFKGPYLKAERTHLQQSLGDENVLIVKF-------EQNTPGCP----EE 369

Query: 2326 VEKEGICVGLKHFRFFVFKDGGKEEKQNSSS---GSIKSYYVNVDSFARFYEKQASFFDM 2156
            + + GI VGL+ +RFFV+KD GK+           S+K Y+V ++S    YEK+      
Sbjct: 370  IVQNGILVGLRRYRFFVYKDDGKKRSSKDKEEKIDSVKCYFVRMESLNP-YEKETYILRD 428

Query: 2155 MSMHDQRCIFMHVHNLSSLSAYMARFSLILSKTITLEVDLNDPDVHVEVIDDMPCKDVNG 1976
              +H+ RC FMHVH +SS++ YMARFSL LS T+ L+VDLN   V+++ I+D+ C D +G
Sbjct: 429  KMVHEARCNFMHVHMVSSMAKYMARFSLTLSTTVKLQVDLNS--VNIDRIEDICCHDKSG 486

Query: 1975 LHVYDKDGKLQIHTDGTGYISEELALRCPQNCF--KGTSLNDRFIERYLEIVRPGTSTSQ 1802
              +YD+DGK  IHTDGTGYISE+LA +CPQ+ F  K    N   +ERY   V+ G ++S+
Sbjct: 487  RIIYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKHRCAN---LERYTNGVKLGENSSE 543

Query: 1801 LKPDMLQ---PPLLIQFRMFHKGRAVKGTVLVNKKLQGKRIQIRPSMIKVEPDPGLSCIP 1631
            L     Q   PPLL+Q R+F+ G AVKGT+LVN+KL  + IQIRPSMIKVE DP LS   
Sbjct: 544  LGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRRTIQIRPSMIKVEADPRLSRAQ 603

Query: 1630 AVSSFEIVSTSIRPRKPRLSRYLIALLNYGGVPRDFFIGILVNEIWDAHNILSNKRAALK 1451
              +S EI + S++PR   LSR LIALL YGGVP ++F  IL N + +   + S++  ALK
Sbjct: 604  MFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALK 663

Query: 1450 VAVNYGEMDDNYTVARMILSGIPLDEPYIQWRLSILGKVELKSLKEGKLPIQDSFYVMGT 1271
            VAVN+ + DD  T   MI++G+PL EPY+   LS L K E   LK G+LPI D+FY+MGT
Sbjct: 664  VAVNHRDRDDASTATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGT 723

Query: 1270 TDPTGSLNSNEVCIIHETGQFEGDVLVYRTPGVHFGDVHILKAKRVKGLEDIVGTSKYGI 1091
             DPT +LN +EVC+I E GQ  G+VLVYR PG+HFGD+H L A  VK L DIVG +KYGI
Sbjct: 724  ADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGI 783

Query: 1090 FFPTNGPRSLADKMAGGDFDGDMYFVSRHPKLLTCFRQSEPWTPTPLCSKSTSVSRKPSE 911
            FF T GPRS A ++A GDFDGD Y+VS++P+LL  F  S PW  + + S   ++ R+P+ 
Sbjct: 784  FFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYFTASRPW--SRIHSTPKTLHREPNN 841

Query: 910  FTAXXXXXXXXXXXLTTRFQPCNSAGMAANSWLSYMDEMLSLGDE---QKDKKLDLQNKM 740
            F+A           L TR    + A  +AN W + MD +L LG     + ++   ++ K+
Sbjct: 842  FSAEEREHDLFQTFLETRMPNYSMADASAN-WYALMDRLLILGKNNTTENEEIKSVKEKL 900

Query: 739  LRLVDIYYEALDAPKKGKKVVVPRDLIPKKYPHFMRKADQCSYKSTSVLGEIFDKADELQ 560
              L+D+YY+A+DAPK G KV +P+ L   K+PHF++K +  SY STSVLGEI+D+ ++ +
Sbjct: 901  FELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKE--SYHSTSVLGEIYDRVEKFK 958

Query: 559  LETP-AVQVWKLPCFDIEVPLRCITSWEGHYKRYKGEMSDALK-SGDEKDAAANNVIEKY 386
             E P AV++ KL  F++ +P  C+  WE  Y+ Y+ EM +AL  S + K+  A+ VI+KY
Sbjct: 959  AEEPAAVEIKKLSAFEVGIPDTCLRLWEERYRNYRFEMKEALNTSSESKNDLADQVIKKY 1018

Query: 385  KQILYGADEFEKSPREWEEIRFDAVAMYHVVYGCAMQSNQVNKCGFAWRVAGSALMKIYM 206
            KQ+LY A + E+S R   ++  DA+A+Y V Y  A     V KCGFAW+VAG+AL K++ 
Sbjct: 1019 KQLLYEAPDMEESIRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGFAWKVAGAALCKLHA 1078

Query: 205  E----EQDEKPVYCLPSVLREIL 149
            E    E ++K +   PS+L ++L
Sbjct: 1079 ELHAKEHNQKVMAMSPSILHKLL 1101