BLASTX nr result
ID: Rheum21_contig00010404
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00010404
(528 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY03153.1| PRP38 family protein isoform 4 [Theobroma cacao] 88 1e-15
gb|EOY03152.1| PRP38 family protein isoform 3 [Theobroma cacao] 88 1e-15
gb|EOY03150.1| PRP38 family protein isoform 1 [Theobroma cacao] ... 88 1e-15
ref|XP_006372423.1| pre-mRNA splicing factor PRP38 family protei... 82 1e-13
ref|XP_002327478.1| predicted protein [Populus trichocarpa] 81 1e-13
ref|XP_003544972.1| PREDICTED: pre-mRNA-splicing factor 38B-like... 80 3e-13
ref|XP_003519321.1| PREDICTED: pre-mRNA-splicing factor 38B-like... 80 4e-13
ref|XP_002305255.1| pre-mRNA splicing factor PRP38 family protei... 79 5e-13
ref|XP_006384124.1| hypothetical protein POPTR_0004s07420g [Popu... 79 5e-13
ref|XP_002528504.1| protein with unknown function [Ricinus commu... 79 8e-13
ref|XP_003631852.1| PREDICTED: uncharacterized protein LOC100267... 78 1e-12
ref|XP_003631851.1| PREDICTED: uncharacterized protein LOC100267... 78 1e-12
ref|XP_002265636.1| PREDICTED: uncharacterized protein LOC100267... 78 1e-12
ref|XP_003616194.1| Pre-mRNA-splicing factor 38B [Medicago trunc... 77 2e-12
emb|CBI28632.3| unnamed protein product [Vitis vinifera] 77 2e-12
gb|EMJ23582.1| hypothetical protein PRUPE_ppa006019mg [Prunus pe... 77 3e-12
gb|ESW13938.1| hypothetical protein PHAVU_008G239200g [Phaseolus... 76 4e-12
ref|XP_004490796.1| PREDICTED: pre-mRNA-splicing factor 38B-like... 75 9e-12
ref|XP_006491725.1| PREDICTED: pre-mRNA-splicing factor 38B-like... 74 2e-11
ref|XP_006491724.1| PREDICTED: pre-mRNA-splicing factor 38B-like... 74 2e-11
>gb|EOY03153.1| PRP38 family protein isoform 4 [Theobroma cacao]
Length = 304
Score = 87.8 bits (216), Expect = 1e-15
Identities = 44/69 (63%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVE-NKDRTSASANLAKLKDMYGDLGEKRGSGSERVSMRDSSAEEV 264
+QA H+DR SS E +K++TSAS+NLAKLKD+YGDL +++G G ERV RD+S EEV
Sbjct: 236 LQAGNSHFDRHSSPPKEGSKEKTSASSNLAKLKDLYGDLSDQKGDGFERVPRRDNSGEEV 295
Query: 265 IRLGGSTWK 291
IRLGGSTWK
Sbjct: 296 IRLGGSTWK 304
>gb|EOY03152.1| PRP38 family protein isoform 3 [Theobroma cacao]
Length = 326
Score = 87.8 bits (216), Expect = 1e-15
Identities = 44/69 (63%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVE-NKDRTSASANLAKLKDMYGDLGEKRGSGSERVSMRDSSAEEV 264
+QA H+DR SS E +K++TSAS+NLAKLKD+YGDL +++G G ERV RD+S EEV
Sbjct: 258 LQAGNSHFDRHSSPPKEGSKEKTSASSNLAKLKDLYGDLSDQKGDGFERVPRRDNSGEEV 317
Query: 265 IRLGGSTWK 291
IRLGGSTWK
Sbjct: 318 IRLGGSTWK 326
>gb|EOY03150.1| PRP38 family protein isoform 1 [Theobroma cacao]
gi|508711254|gb|EOY03151.1| PRP38 family protein isoform
1 [Theobroma cacao]
Length = 446
Score = 87.8 bits (216), Expect = 1e-15
Identities = 44/69 (63%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVE-NKDRTSASANLAKLKDMYGDLGEKRGSGSERVSMRDSSAEEV 264
+QA H+DR SS E +K++TSAS+NLAKLKD+YGDL +++G G ERV RD+S EEV
Sbjct: 378 LQAGNSHFDRHSSPPKEGSKEKTSASSNLAKLKDLYGDLSDQKGDGFERVPRRDNSGEEV 437
Query: 265 IRLGGSTWK 291
IRLGGSTWK
Sbjct: 438 IRLGGSTWK 446
>ref|XP_006372423.1| pre-mRNA splicing factor PRP38 family protein [Populus trichocarpa]
gi|550319047|gb|ERP50220.1| pre-mRNA splicing factor
PRP38 family protein [Populus trichocarpa]
Length = 376
Score = 81.6 bits (200), Expect = 1e-13
Identities = 42/70 (60%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Frame = +1
Query: 88 VQAPAEHYDR-PSSQRVENKDRTSASANLAKLKDMYGDLGEKRG-SGSERVSMRDSSAEE 261
+QA A +DR P+ QR NKD+TSA +NLAKLKD+YGDL +++G +G ERV RD+ EE
Sbjct: 307 LQAGASPFDRHPTPQRDGNKDKTSAPSNLAKLKDLYGDLSDQKGDAGLERVPRRDNDGEE 366
Query: 262 VIRLGGSTWK 291
V RLGGSTW+
Sbjct: 367 VFRLGGSTWR 376
>ref|XP_002327478.1| predicted protein [Populus trichocarpa]
Length = 376
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
Frame = +1
Query: 91 QAPAEHYDR-PSSQRVENKDRTSASANLAKLKDMYGDLGEKRG-SGSERVSMRDSSAEEV 264
QA A +DR P+ QR NKD+TSA +NLAKLKD+YGDL +++G +G ERV RD+ EEV
Sbjct: 308 QAGASPFDRHPTPQRDGNKDKTSAPSNLAKLKDLYGDLSDQKGDAGLERVPRRDNDGEEV 367
Query: 265 IRLGGSTWK 291
RLGGSTW+
Sbjct: 368 FRLGGSTWR 376
>ref|XP_003544972.1| PREDICTED: pre-mRNA-splicing factor 38B-like [Glycine max]
Length = 444
Score = 80.1 bits (196), Expect = 3e-13
Identities = 41/69 (59%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVENKDRTSASANLAKLKDMYGDLGEKRGSGS-ERVSMRDSSAEEV 264
+QA Y+ SS + E RTSAS+NLAKLKDMYGDLG+ +G + ER+ +DS EEV
Sbjct: 375 LQAGTGWYESRSSPQREESKRTSASSNLAKLKDMYGDLGDSKGDANMERIPRKDSGGEEV 434
Query: 265 IRLGGSTWK 291
IRLGGSTWK
Sbjct: 435 IRLGGSTWK 443
>ref|XP_003519321.1| PREDICTED: pre-mRNA-splicing factor 38B-like [Glycine max]
Length = 428
Score = 79.7 bits (195), Expect = 4e-13
Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVENKDRTSASANLAKLKDMYGDLGEKRGSGS-ERVSMRDSSAEEV 264
+QA Y+ SS + E RTSAS+NLA+LKDMYGDLG+ +G + ER+ +DS EEV
Sbjct: 359 LQAGTAQYESRSSPQREESKRTSASSNLAQLKDMYGDLGDNKGDANMERIPRKDSGGEEV 418
Query: 265 IRLGGSTWK 291
IRLGGSTWK
Sbjct: 419 IRLGGSTWK 427
>ref|XP_002305255.1| pre-mRNA splicing factor PRP38 family protein [Populus trichocarpa]
gi|222848219|gb|EEE85766.1| pre-mRNA splicing factor
PRP38 family protein [Populus trichocarpa]
Length = 397
Score = 79.3 bits (194), Expect = 5e-13
Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Frame = +1
Query: 88 VQAPAEHYDR-PSSQRVENKDRTSASANLAKLKDMYGDLGEKRG-SGSERVSMRDSSAEE 261
+QA +D+ P+ QR +KDRTSAS+NLAKLKD+YGDLG+++G +G ER RD+ EE
Sbjct: 328 LQAGTSPFDQHPTPQRDGSKDRTSASSNLAKLKDLYGDLGDQKGDAGLERGPRRDNDGEE 387
Query: 262 VIRLGGSTWK 291
V RLGGSTW+
Sbjct: 388 VFRLGGSTWR 397
>ref|XP_006384124.1| hypothetical protein POPTR_0004s07420g [Populus trichocarpa]
gi|118481208|gb|ABK92555.1| unknown [Populus
trichocarpa] gi|550340532|gb|ERP61921.1| hypothetical
protein POPTR_0004s07420g [Populus trichocarpa]
Length = 427
Score = 79.3 bits (194), Expect = 5e-13
Identities = 41/70 (58%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Frame = +1
Query: 88 VQAPAEHYDR-PSSQRVENKDRTSASANLAKLKDMYGDLGEKRG-SGSERVSMRDSSAEE 261
+QA +D+ P+ QR +KDRTSAS+NLAKLKD+YGDLG+++G +G ER RD+ EE
Sbjct: 358 LQAGTSPFDQHPTPQRDGSKDRTSASSNLAKLKDLYGDLGDQKGDAGLERGPRRDNDGEE 417
Query: 262 VIRLGGSTWK 291
V RLGGSTW+
Sbjct: 418 VFRLGGSTWR 427
>ref|XP_002528504.1| protein with unknown function [Ricinus communis]
gi|223532064|gb|EEF33873.1| protein with unknown
function [Ricinus communis]
Length = 418
Score = 78.6 bits (192), Expect = 8e-13
Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVEN--KDRTSASANLAKLKDMYGDLGEKRGSGS-ERVSMRDSSAE 258
+QA A +DR SS + + RTSAS+NLAKLKD+YGDL ++RG G ER RD S+E
Sbjct: 348 IQAGASPFDRHSSPYRDGGKEKRTSASSNLAKLKDLYGDLSDQRGDGGVERAPRRDDSSE 407
Query: 259 EVIRLGGSTWK 291
E+IRLGGSTWK
Sbjct: 408 EIIRLGGSTWK 418
>ref|XP_003631852.1| PREDICTED: uncharacterized protein LOC100267328 isoform 3 [Vitis
vinifera]
Length = 399
Score = 77.8 bits (190), Expect = 1e-12
Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVE-NKDRTSASANLAKLKDMYGDLG-EKRGSGSERVSMRDSSAEE 261
+QA +H D SS + +K++TSASANLAKL+D+YGD G +K GS ER S RD+S EE
Sbjct: 330 LQARNDHIDHRSSPLADGSKEKTSASANLAKLRDLYGDTGDQKGGSAMERGSRRDNSGEE 389
Query: 262 VIRLGGSTWK 291
VIRLGGS+WK
Sbjct: 390 VIRLGGSSWK 399
>ref|XP_003631851.1| PREDICTED: uncharacterized protein LOC100267328 isoform 2 [Vitis
vinifera]
Length = 407
Score = 77.8 bits (190), Expect = 1e-12
Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVE-NKDRTSASANLAKLKDMYGDLG-EKRGSGSERVSMRDSSAEE 261
+QA +H D SS + +K++TSASANLAKL+D+YGD G +K GS ER S RD+S EE
Sbjct: 338 LQARNDHIDHRSSPLADGSKEKTSASANLAKLRDLYGDTGDQKGGSAMERGSRRDNSGEE 397
Query: 262 VIRLGGSTWK 291
VIRLGGS+WK
Sbjct: 398 VIRLGGSSWK 407
>ref|XP_002265636.1| PREDICTED: uncharacterized protein LOC100267328 isoform 1 [Vitis
vinifera]
Length = 433
Score = 77.8 bits (190), Expect = 1e-12
Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVE-NKDRTSASANLAKLKDMYGDLG-EKRGSGSERVSMRDSSAEE 261
+QA +H D SS + +K++TSASANLAKL+D+YGD G +K GS ER S RD+S EE
Sbjct: 364 LQARNDHIDHRSSPLADGSKEKTSASANLAKLRDLYGDTGDQKGGSAMERGSRRDNSGEE 423
Query: 262 VIRLGGSTWK 291
VIRLGGS+WK
Sbjct: 424 VIRLGGSSWK 433
>ref|XP_003616194.1| Pre-mRNA-splicing factor 38B [Medicago truncatula]
gi|355517529|gb|AES99152.1| Pre-mRNA-splicing factor 38B
[Medicago truncatula]
Length = 433
Score = 77.4 bits (189), Expect = 2e-12
Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Frame = +1
Query: 100 AEHYDRPSSQRVENKDRTSASANLAKLKDMYGDLGEKRGSGS-ERVSMRDSSAEEVIRLG 276
A H R S QR +K +TSAS+NLAKLKD+YGDLGE +G + ER+ RD+S EEVIRLG
Sbjct: 369 ARHDSRSSPQRDGSK-KTSASSNLAKLKDLYGDLGESKGDANMERIPRRDNSGEEVIRLG 427
Query: 277 GSTWK 291
GS+WK
Sbjct: 428 GSSWK 432
>emb|CBI28632.3| unnamed protein product [Vitis vinifera]
Length = 383
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Frame = +1
Query: 109 YDRPSSQRVENKDRTSASANLAKLKDMYGDLG-EKRGSGSERVSMRDSSAEEVIRLGGST 285
YDR S +K++TSASANLAKL+D+YGD G +K GS ER S RD+S EEVIRLGGS+
Sbjct: 322 YDRSSRDGNGSKEKTSASANLAKLRDLYGDTGDQKGGSAMERGSRRDNSGEEVIRLGGSS 381
Query: 286 WK 291
WK
Sbjct: 382 WK 383
>gb|EMJ23582.1| hypothetical protein PRUPE_ppa006019mg [Prunus persica]
Length = 432
Score = 76.6 bits (187), Expect = 3e-12
Identities = 38/60 (63%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = +1
Query: 115 RPSSQRVENKDRTSASANLAKLKDMYGDLGEKRGSGS-ERVSMRDSSAEEVIRLGGSTWK 291
R S QR NKDRTSAS+NLAKL+D+YGD+ E++G S +R+S D+ EEVIRLGGS WK
Sbjct: 373 RSSPQRDVNKDRTSASSNLAKLRDLYGDISEQKGDASMDRISRIDNGGEEVIRLGGSRWK 432
>gb|ESW13938.1| hypothetical protein PHAVU_008G239200g [Phaseolus vulgaris]
Length = 437
Score = 76.3 bits (186), Expect = 4e-12
Identities = 40/69 (57%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = +1
Query: 88 VQAPAEHYDRPSSQRVENKDRTSASANLAKLKDMYGDLGE-KRGSGSERVSMRDSSAEEV 264
+QA Y+ SS + RTSAS+NLAKLKDMYGDLG+ KR E++ +DS EEV
Sbjct: 368 LQAGTARYESCSSPPGDGSKRTSASSNLAKLKDMYGDLGDNKRDINMEKIPRKDSGGEEV 427
Query: 265 IRLGGSTWK 291
IRLGGSTWK
Sbjct: 428 IRLGGSTWK 436
>ref|XP_004490796.1| PREDICTED: pre-mRNA-splicing factor 38B-like [Cicer arietinum]
Length = 434
Score = 75.1 bits (183), Expect = 9e-12
Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = +1
Query: 91 QAPAEHYDRPSSQRVENKDRTSASANLAKLKDMYGDLGEKRGSGS-ERVSMRDSSAEEVI 267
Q YD SS + + +TSAS+NLAKLKD+YGDLG +G + ER+ RD+ EEVI
Sbjct: 366 QVGTARYDSRSSPQRDGSKKTSASSNLAKLKDLYGDLGNSKGDANVERIPRRDNGGEEVI 425
Query: 268 RLGGSTWK 291
RLGGS+WK
Sbjct: 426 RLGGSSWK 433
>ref|XP_006491725.1| PREDICTED: pre-mRNA-splicing factor 38B-like isoform X2 [Citrus
sinensis]
Length = 383
Score = 73.9 bits (180), Expect = 2e-11
Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Frame = +1
Query: 118 PSSQRVENKDRTSASANLAKLKDMYGDLG-EKRGSGSERVSMRDSSAEEVIRLGGSTWK 291
PS Q NK++TSAS+NLAKLKD+YGD+ +K +G ER++ RD++ EEVIRLGGS+WK
Sbjct: 325 PSPQTDGNKEKTSASSNLAKLKDLYGDVSDQKEVAGPERIARRDTNDEEVIRLGGSSWK 383
>ref|XP_006491724.1| PREDICTED: pre-mRNA-splicing factor 38B-like isoform X1 [Citrus
sinensis]
Length = 438
Score = 73.9 bits (180), Expect = 2e-11
Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Frame = +1
Query: 118 PSSQRVENKDRTSASANLAKLKDMYGDLG-EKRGSGSERVSMRDSSAEEVIRLGGSTWK 291
PS Q NK++TSAS+NLAKLKD+YGD+ +K +G ER++ RD++ EEVIRLGGS+WK
Sbjct: 380 PSPQTDGNKEKTSASSNLAKLKDLYGDVSDQKEVAGPERIARRDTNDEEVIRLGGSSWK 438