BLASTX nr result
ID: Rheum21_contig00009751
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00009751
(526 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 170 3e-49
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 172 4e-49
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 167 6e-49
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 167 2e-48
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 169 2e-48
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 169 2e-48
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 169 2e-48
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 168 3e-48
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 168 3e-48
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 169 3e-48
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|... 169 3e-48
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g... 167 8e-48
gb|AAP43914.1| integrase [Gossypium raimondii] 164 1e-47
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 165 2e-47
gb|AAP43919.1| integrase [Gossypium hirsutum] 164 4e-47
emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera] 163 5e-47
gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Ja... 165 9e-47
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 163 1e-46
emb|CAN84067.1| hypothetical protein VITISV_041979 [Vitis vinifera] 162 2e-46
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 163 3e-46
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 170 bits (430), Expect(2) = 3e-49
Identities = 74/144 (51%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IKD Y D F ++ HC+ + + Y + +G++++A +LCIP SS+RLLL++E
Sbjct: 1143 IFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQE 1202
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG +KT D L HFFWPKM V R C TCQ+AK++ +PHGLY PLP+
Sbjct: 1203 AHGGGLMGHFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPV 1262
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PSAPWED+SMDF+ GLP +R+G+D
Sbjct: 1263 PSAPWEDISMDFVLGLPRTRKGRD 1286
Score = 50.8 bits (120), Expect(2) = 3e-49
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
++FVVVDRFSKMAHFI C T A+ IADLFF
Sbjct: 1287 SVFVVVDRFSKMAHFIPCHKTDDATHIADLFF 1318
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 172 bits (436), Expect(2) = 4e-49
Identities = 74/144 (51%), Positives = 102/144 (70%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IKD Y D F ++++C+ R + + L +G++++A +LCIP SS+RLLL++E
Sbjct: 1184 IFGLETIKDQYVHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQE 1243
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG++KT D L HFFWPKM V RF C TCQRAK++ +PHGLY PLP+
Sbjct: 1244 AHGGGLMGHFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPV 1303
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PWED+SMDF+ GLP +++G+D
Sbjct: 1304 PSVPWEDISMDFVLGLPRTKKGRD 1327
Score = 48.1 bits (113), Expect(2) = 4e-49
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + A +ADLFF
Sbjct: 1328 SIFVVVDRFSKMAHFIPCHKSDDAVNVADLFF 1359
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 167 bits (424), Expect(2) = 6e-49
Identities = 73/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IKD YA D F ++ HC+ R + + + +G++++A +LCIP SS+RLLL++E
Sbjct: 1140 IFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQE 1199
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG +KT D L HFFWP+M V RF C TCQ+AK++ PHGLY PLP+
Sbjct: 1200 AHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPV 1259
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
P+ PWED+SMDF+ GLP ++RG+D
Sbjct: 1260 PTVPWEDISMDFVLGLPRTKRGRD 1283
Score = 52.4 bits (124), Expect(2) = 6e-49
Identities = 25/32 (78%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C T AS IADLFF
Sbjct: 1284 SIFVVVDRFSKMAHFIPCHKTDDASHIADLFF 1315
Score = 78.2 bits (191), Expect(2) = 4e-18
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Frame = +1
Query: 19 IKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPK-SSIRLLLIEEAHATR 195
I++ +DP ++++ ++ + G L+ R+C+P ++ L+++EAH +
Sbjct: 1966 IREAQKNDPDMRGLLKNMKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAHESP 2025
Query: 196 G--HFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSS-PHGLYTPLPIPSAP 366
H G K L+E ++W M ++ F C CQR KA+ P GL PL +P
Sbjct: 2026 YSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWK 2085
Query: 367 WEDLSMDFITGLPLSRRGKD 426
W+++ MDFITGLP ++ G D
Sbjct: 2086 WDEIGMDFITGLPKTQGGYD 2105
Score = 38.5 bits (88), Expect(2) = 4e-18
Identities = 16/32 (50%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+I+VVVDR +K+A FI KTT+ +++A+L+F
Sbjct: 2106 SIWVVVDRLTKVARFIPVKTTYGGNKLAELYF 2137
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 167 bits (424), Expect(2) = 2e-48
Identities = 73/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IKD YA D F ++ HC+ R + + + +G++++A +LCIP SS+RLLL++E
Sbjct: 1119 IFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQE 1178
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG +KT D L HFFWP+M V RF C TCQ+AK++ PHGLY PLP+
Sbjct: 1179 AHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPV 1238
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
P+ PWED+SMDF+ GLP ++RG+D
Sbjct: 1239 PTVPWEDISMDFVLGLPRTKRGRD 1262
Score = 50.8 bits (120), Expect(2) = 2e-48
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKM HFI C T AS IADLFF
Sbjct: 1263 SIFVVVDRFSKMVHFIPCHKTDDASHIADLFF 1294
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 169 bits (428), Expect(2) = 2e-48
Identities = 72/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IK+ YA D F ++ +C+ R + + L G++++A +LCIP SS+R+LL++E
Sbjct: 1168 IFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQE 1227
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG++KT D L +HFFWPKM V RF C TCQ+AK++ +PHGLY PLP+
Sbjct: 1228 AHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1287
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PWED+SMDF+ GLP +++G+D
Sbjct: 1288 PSVPWEDISMDFVLGLPRTKKGRD 1311
Score = 49.3 bits (116), Expect(2) = 2e-48
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + A+ +ADLFF
Sbjct: 1312 SIFVVVDRFSKMAHFIPCHKSDDATHVADLFF 1343
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 169 bits (428), Expect(2) = 2e-48
Identities = 72/144 (50%), Positives = 101/144 (70%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IK+ YA D F ++ +C R + + L G++++A +LCIP SS+R+LL++E
Sbjct: 481 IFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQE 540
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG++KT D L +HFFWPKM V RF C TCQ+AK++ +PHGLY PLP+
Sbjct: 541 AHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 600
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PWED+SMDF+ GLP +++G+D
Sbjct: 601 PSVPWEDISMDFVLGLPRTKKGRD 624
Score = 49.3 bits (116), Expect(2) = 2e-48
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + A+ +ADLFF
Sbjct: 625 SIFVVVDRFSKMAHFIPCHKSDDATHVADLFF 656
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 169 bits (427), Expect(2) = 2e-48
Identities = 72/144 (50%), Positives = 101/144 (70%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IK+ YA D F ++ +C+ R + + L G++++A +LCIP SS+R+LL++E
Sbjct: 1168 IFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQE 1227
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG++KT D L +HFFWPKM V RF C TCQ+AK + +PHGLY PLP+
Sbjct: 1228 AHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPV 1287
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PWED+SMDF+ GLP +++G+D
Sbjct: 1288 PSVPWEDISMDFVLGLPRTKKGRD 1311
Score = 49.3 bits (116), Expect(2) = 2e-48
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + A+ +ADLFF
Sbjct: 1312 SIFVVVDRFSKMAHFIPCHKSDDATHVADLFF 1343
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 168 bits (426), Expect(2) = 3e-48
Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IKD Y D F ++E+C+ R + + + G++++A +LCIP SSIRLLL++E
Sbjct: 1199 IFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQE 1258
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG++K D L HFFWP+M V RF C TCQ+AK++ +PHGLY PLP+
Sbjct: 1259 AHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1318
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PWED+SMDF+ GLP +++G+D
Sbjct: 1319 PSVPWEDISMDFVLGLPRTKKGRD 1342
Score = 49.3 bits (116), Expect(2) = 3e-48
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + A+ +ADLFF
Sbjct: 1343 SIFVVVDRFSKMAHFIPCHKSDDAANVADLFF 1374
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 168 bits (426), Expect(2) = 3e-48
Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IKD Y D F ++E+C+ R + + + G++++A +LCIP SSIRLLL++E
Sbjct: 1196 IFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQE 1255
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG++K D L HFFWP+M V RF C TCQ+AK++ +PHGLY PLP+
Sbjct: 1256 AHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1315
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PWED+SMDF+ GLP +++G+D
Sbjct: 1316 PSVPWEDISMDFVLGLPRTKKGRD 1339
Score = 49.3 bits (116), Expect(2) = 3e-48
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + A+ +ADLFF
Sbjct: 1340 SIFVVVDRFSKMAHFIPCHKSDDAANVADLFF 1371
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 169 bits (428), Expect(2) = 3e-48
Identities = 74/144 (51%), Positives = 103/144 (71%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
+ G IK+LY++D F+ C + +E Y + +G+L++A +LC+P S+RLLL++E
Sbjct: 1143 VTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQE 1202
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
HA GHFG RKT D L +HF+WPKM V R + CVTC +AK+K +PHGLYTPLP+
Sbjct: 1203 THAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPV 1262
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PSAPWED+SMDF+ GLP ++RG+D
Sbjct: 1263 PSAPWEDISMDFVLGLPRTKRGRD 1286
Score = 48.5 bits (114), Expect(2) = 3e-48
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + AS IA LFF
Sbjct: 1287 SIFVVVDRFSKMAHFIPCHKSDDASHIASLFF 1318
>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 681
Score = 169 bits (428), Expect(2) = 3e-48
Identities = 74/144 (51%), Positives = 103/144 (71%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
+ G IK+LY++D F+ C + +E Y + +G+L++A +LC+P S+RLLL++E
Sbjct: 111 VTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQE 170
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
HA GHFG RKT D L +HF+WPKM V R + CVTC +AK+K +PHGLYTPLP+
Sbjct: 171 THAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPV 230
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PSAPWED+SMDF+ GLP ++RG+D
Sbjct: 231 PSAPWEDISMDFVLGLPRTKRGRD 254
Score = 48.5 bits (114), Expect(2) = 3e-48
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + AS IA LFF
Sbjct: 255 SIFVVVDRFSKMAHFIPCHKSDDASHIASLFF 286
>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
Japonica Group]
Length = 681
Score = 167 bits (424), Expect(2) = 8e-48
Identities = 74/142 (52%), Positives = 101/142 (71%), Gaps = 2/142 (1%)
Frame = +1
Query: 7 GFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEEAH 186
G IK+LY +D F+ C + +E Y + +G+L++A +LC+P S+RLLL++E H
Sbjct: 113 GIESIKELYPADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETH 172
Query: 187 A--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPIPS 360
A GHFG RKT D L +HF+WPKM V R + CVTC +AK+K +PHGLYTPLP+PS
Sbjct: 173 AGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPS 232
Query: 361 APWEDLSMDFITGLPLSRRGKD 426
APWED+SMDF+ GLP ++RG+D
Sbjct: 233 APWEDISMDFVLGLPRTKRGRD 254
Score = 48.5 bits (114), Expect(2) = 8e-48
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + AS IA LFF
Sbjct: 255 SIFVVVDRFSKMAHFIPCHKSDDASHIASLFF 286
>gb|AAP43914.1| integrase [Gossypium raimondii]
Length = 340
Score = 164 bits (416), Expect(2) = 1e-47
Identities = 71/144 (49%), Positives = 102/144 (70%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
+LGF +KDLYA+D FA I + C+ F ++ +GYL++ RLC+PK S+R LL+ E
Sbjct: 111 LLGFEYLKDLYATDSDFASIYDACEHGA-FHKFYKHDGYLFQNNRLCLPKCSMRELLVRE 169
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH+ GHFG+ KT D L EHF+WP M V + C +C+TC++ K+ PHGLYTPLP+
Sbjct: 170 AHSGGLMGHFGVTKTYDVLHEHFYWPNMRKLVEKICSTCITCKQDKSTVMPHGLYTPLPV 229
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS+PW D+S+DF+ GLP+++ G+D
Sbjct: 230 PSSPWTDISIDFVIGLPITKHGRD 253
Score = 50.8 bits (120), Expect(2) = 1e-47
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C T A+ +ADLFF
Sbjct: 254 SIFVVVDRFSKMAHFIPCHKTDDATHVADLFF 285
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 165 bits (418), Expect(2) = 2e-47
Identities = 70/144 (48%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IK+ YA D F ++ +C+ R + + L G++++A +LCIP SS+ +LL++E
Sbjct: 1064 IFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQE 1123
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG++KT D L +H FWPKM V RF C TCQ+AK++ +PHGLY PLP+
Sbjct: 1124 AHGGGLMGHFGVKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1183
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PWED+SMDF+ GLP +++G+D
Sbjct: 1184 PSVPWEDISMDFVLGLPRTKKGRD 1207
Score = 49.3 bits (116), Expect(2) = 2e-47
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + A+ +ADLFF
Sbjct: 1208 SIFVVVDRFSKMAHFIPCHKSDDATHVADLFF 1239
>gb|AAP43919.1| integrase [Gossypium hirsutum]
Length = 334
Score = 164 bits (414), Expect(2) = 4e-47
Identities = 77/144 (53%), Positives = 102/144 (70%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
+LGF IK+LY D F+ I ++C FE ++L +G L++ RLCIPK S+R LLI E
Sbjct: 111 VLGFEHIKELYDDDTDFSHIYKNCGHTA-FEKFYLVDGLLFRLNRLCIPKCSMRELLIHE 169
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH+ GHFG+ KTLD L+EHF WP M V + C C+TC++AK+K HGLYTPLPI
Sbjct: 170 AHSGGLMGHFGVAKTLDILQEHFHWPHMKKDVEKVCSKCITCKQAKSKVMLHGLYTPLPI 229
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
P++PW DLSMDFI GLP +++G+D
Sbjct: 230 PTSPWVDLSMDFILGLPRTKKGRD 253
Score = 50.1 bits (118), Expect(2) = 4e-47
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFFE 523
+IFVVVDRFSKM+HFI C T A+ +ADLFF+
Sbjct: 254 SIFVVVDRFSKMSHFIPCHKTDDATHVADLFFK 286
>emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera]
Length = 1323
Score = 163 bits (413), Expect(2) = 5e-47
Identities = 76/144 (52%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
+LGF +K+LYA+D FA + C++ F ++ +GYL+ RLC P SS+R LL+ E
Sbjct: 891 LLGFEYVKELYANDDDFASVYGACEKTX-FGKFYRLDGYLFXENRLCXPNSSMRELLVRE 949
Query: 181 AH--ATRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG+RKTLD L EHFFWPKM V R C C+TC AK++ PHGLYTPLP+
Sbjct: 950 AHXGGLMGHFGVRKTLDILHEHFFWPKMKRDVERACARCITCXXAKSRVLPHGLYTPLPV 1009
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS P D+SMDF+ GLP SR +D
Sbjct: 1010 PSVPLVDISMDFVLGLPRSRNXRD 1033
Score = 50.1 bits (118), Expect(2) = 5e-47
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI+C T A+ IA+LFF
Sbjct: 1034 SIFVVVDRFSKMAHFISCHKTDDATHIANLFF 1065
>gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Japonica Group]
Length = 540
Score = 165 bits (417), Expect(2) = 9e-47
Identities = 73/144 (50%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IK+ YA DP F ++ +C+ R + + + G++Y+A RLCIP S+RLLLI+E
Sbjct: 63 IFGLESIKEQYALDPDFNEVMINCKEGRTWNKFVINGGFVYRANRLCIPVGSVRLLLIQE 122
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG +KT D L HFFWP+M + RF C TCQ+AK++ +PHGLY PLP+
Sbjct: 123 AHGGGLTGHFGAKKTEDVLAMHFFWPRMRKDIERFVARCTTCQKAKSRLNPHGLYMPLPV 182
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PW D+SMDF+ GLP ++RG+D
Sbjct: 183 PSIPWADISMDFVLGLPRTKRGRD 206
Score = 47.8 bits (112), Expect(2) = 9e-47
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + A IAD+FF
Sbjct: 207 SIFVVVDRFSKMAHFIPCHKSDDAVHIADMFF 238
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 163 bits (412), Expect(2) = 1e-46
Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
I G IK+ YA D F ++ +C+ R + + L G++++A +LCIP SS+ +LL++E
Sbjct: 1168 IFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQE 1227
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG++K D L +HFFWPK V RF C TCQ+AK++ +PHGLY PLP+
Sbjct: 1228 AHGGGLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPV 1287
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PWED+SMDF+ GLP +++G+D
Sbjct: 1288 PSVPWEDISMDFVLGLPRTKKGRD 1311
Score = 49.3 bits (116), Expect(2) = 1e-46
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C + A+ +ADLFF
Sbjct: 1312 SIFVVVDRFSKMAHFIPCHKSDDATHVADLFF 1343
>emb|CAN84067.1| hypothetical protein VITISV_041979 [Vitis vinifera]
Length = 364
Score = 162 bits (411), Expect(2) = 2e-46
Identities = 74/144 (51%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
+LGF +K+LYA+D FA + C++ F ++ +GYL++ LC+P SS+ LL+ E
Sbjct: 111 LLGFEYVKELYANDNDFASVYGACEKTA-FGKFYRLDGYLFRKNILCVPNSSMCELLVRE 169
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG+RKTLD L EHFFWPKM V R C C+TC+R K++ PHGLYT LP+
Sbjct: 170 AHGGDXMGHFGVRKTLDVLHEHFFWPKMKRDVERACARCITCRRTKSRVLPHGLYTLLPV 229
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PSAPW ++ MDF+ GLP SR G+D
Sbjct: 230 PSAPWVNIYMDFVLGLPRSRNGRD 253
Score = 49.3 bits (116), Expect(2) = 2e-46
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKM HFI+C T+ A+ IA+LFF
Sbjct: 254 SIFVVVDRFSKMTHFISCHKTNDATHIANLFF 285
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 163 bits (412), Expect(2) = 3e-46
Identities = 77/144 (53%), Positives = 96/144 (66%), Gaps = 2/144 (1%)
Frame = +1
Query: 1 ILGFALIKDLYASDPFFAPIIEHCQRAREFETYFLCEGYLYKAGRLCIPKSSIRLLLIEE 180
+LGF IK LYA+D F I C++ F Y+ +G+L+ RLCIP SS+R L I E
Sbjct: 1332 LLGFEHIKSLYANDSDFEKIYSSCEKFA-FGKYYRHDGFLFYDNRLCIPNSSLRELFIRE 1390
Query: 181 AHA--TRGHFGIRKTLDALREHFFWPKMTHQVTRFCRSCVTCQRAKAKSSPHGLYTPLPI 354
AH GHFG+ KT+ +++HF WP M V R C C TC++AKAKS PHGLYTPLPI
Sbjct: 1391 AHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPI 1450
Query: 355 PSAPWEDLSMDFITGLPLSRRGKD 426
PS PW D+SMDF+ GLP +R GKD
Sbjct: 1451 PSHPWNDISMDFVVGLPRTRTGKD 1474
Score = 48.1 bits (113), Expect(2) = 3e-46
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +2
Query: 425 TIFVVVDRFSKMAHFIACKTTHSASEIADLFF 520
+IFVVVDRFSKMAHFI C T A IA+LFF
Sbjct: 1475 SIFVVVDRFSKMAHFIPCHKTDDAIHIANLFF 1506