BLASTX nr result
ID: Rheum21_contig00009032
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00009032
(642 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 92 1e-16
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 92 1e-16
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 91 4e-16
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati... 91 4e-16
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 91 4e-16
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 91 4e-16
dbj|BAH80072.1| putative unclassified retrotransposon protein [O... 91 4e-16
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group] 91 4e-16
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-... 91 4e-16
gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japoni... 91 4e-16
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group] 91 4e-16
emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group] 91 4e-16
emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group] 91 4e-16
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group] 91 4e-16
emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group] 91 4e-16
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 91 4e-16
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group] 91 4e-16
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 90 6e-16
gb|AAM15062.1| putative retroelement integrase [Arabidopsis thal... 89 8e-16
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 89 1e-15
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 92.4 bits (228), Expect = 1e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NLGKC F +D +FLG VV+ G+ V++ K++ I+ WP P T T VRSFLGLAGFYRRFV
Sbjct: 959 NLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFV 1018
Query: 399 RNFSSIAA 422
R+FS+IAA
Sbjct: 1019 RDFSTIAA 1026
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 92.0 bits (227), Expect = 1e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NLGKC F +D +FLG VV+ G+ V++ K++ I+ WP P T T VRSFLGLAGFYRRFV
Sbjct: 947 NLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRFV 1006
Query: 399 RNFSSIAA 422
R+FS+IAA
Sbjct: 1007 RDFSTIAA 1014
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 52/68 (76%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ I WP PTT T VRSFLGLAGFYRRFV
Sbjct: 931 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFV 990
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 991 KDFSTIAA 998
>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
Length = 1739
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 1236 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 1295
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 1296 QDFSTIAA 1303
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 903 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 962
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 963 QDFSTIAA 970
Score = 75.9 bits (185), Expect = 9e-12
Identities = 35/68 (51%), Positives = 43/68 (63%)
Frame = +3
Query: 216 ANLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRF 395
A L KC F FLG V+S G+ V+ + V + DW P T T +RSFLGLAG+YRRF
Sbjct: 1694 AKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRF 1753
Query: 396 VRNFSSIA 419
+ NFS IA
Sbjct: 1754 IENFSKIA 1761
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 52/68 (76%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ I WP PTT T VRSFLGLAGFYRRFV
Sbjct: 931 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFV 990
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 991 KDFSTIAA 998
>dbj|BAH80072.1| putative unclassified retrotransposon protein [Oryza sativa Indica
Group]
Length = 848
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 267 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 326
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 327 QDFSTIAA 334
>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
Length = 1667
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 826 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 885
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 886 QDFSTIAA 893
>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108864301|gb|ABA93040.2|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1748
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 1245 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 1304
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 1305 QDFSTIAA 1312
>gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1234
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 719 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 778
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 779 QDFSTIAA 786
>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
Length = 1667
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 826 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 885
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 886 QDFSTIAA 893
>emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]
Length = 1431
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 848 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 907
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 908 QDFSTIAA 915
>emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group]
Length = 2388
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 739 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 798
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 799 QDFSTIAA 806
Score = 72.8 bits (177), Expect = 8e-11
Identities = 33/64 (51%), Positives = 41/64 (64%)
Frame = +3
Query: 228 KCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFVRNF 407
KC F FLG V+S G+ V+ + V + DW P T T +RSFLGLAG+YRRF+ NF
Sbjct: 1673 KCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENF 1732
Query: 408 SSIA 419
S IA
Sbjct: 1733 SKIA 1736
>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
Length = 2241
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ IQ WPTP T + VRSFLGLAGFYRRFV
Sbjct: 997 NLKKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFV 1056
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 1057 QDFSTIAA 1064
>emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]
Length = 1239
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 52/68 (76%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ I WP PTT T VRSFLGLAGFYRRFV
Sbjct: 709 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFV 768
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 769 KDFSTIAA 776
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 90.5 bits (223), Expect = 4e-16
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NLGKC F +D +FLG VV+ G+ V++ K++ I+ WP P T T VRSFLG AGFYRRFV
Sbjct: 962 NLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRFV 1021
Query: 399 RNFSSIAA 422
R+FS+IAA
Sbjct: 1022 RDFSTIAA 1029
>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
Length = 1170
Score = 90.5 bits (223), Expect = 4e-16
Identities = 42/68 (61%), Positives = 52/68 (76%)
Frame = +3
Query: 219 NLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRFV 398
NL KC F +D +FLG VV+ G+ V++ KV+ I WP PTT T VRSFLGLAGFYRRFV
Sbjct: 564 NLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFV 623
Query: 399 RNFSSIAA 422
++FS+IAA
Sbjct: 624 KDFSTIAA 631
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 89.7 bits (221), Expect = 6e-16
Identities = 44/69 (63%), Positives = 52/69 (75%)
Frame = +3
Query: 216 ANLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRF 395
ANL KC F +D FLG VVS G++V+E KVK I+DWPTP + V+SF GLAGFYRRF
Sbjct: 905 ANLEKCTFCTDQVVFLGFVVSGLGIQVDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRF 964
Query: 396 VRNFSSIAA 422
VR FS+IAA
Sbjct: 965 VRGFSTIAA 973
>gb|AAM15062.1| putative retroelement integrase [Arabidopsis thaliana]
Length = 1215
Score = 89.4 bits (220), Expect = 8e-16
Identities = 43/69 (62%), Positives = 53/69 (76%)
Frame = +3
Query: 216 ANLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRF 395
ANL KC F +D FLG VVS DG++V+E+KVK I+DWP+P T VRSF GLAGFYRRF
Sbjct: 603 ANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRF 662
Query: 396 VRNFSSIAA 422
++FS+I A
Sbjct: 663 FKDFSTIVA 671
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 89.0 bits (219), Expect = 1e-15
Identities = 42/69 (60%), Positives = 55/69 (79%)
Frame = +3
Query: 216 ANLGKCRFASDTTNFLGSVVSKDGLRVNEKKVKVIQDWPTPTTPTMVRSFLGLAGFYRRF 395
ANL KC F +D FLG VVS DG++V+E+KVK I++WP+P + VRSF GLAGFYRRF
Sbjct: 1094 ANLKKCTFGTDNLVFLGFVVSTDGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRF 1153
Query: 396 VRNFSSIAA 422
V++FS++AA
Sbjct: 1154 VKDFSTLAA 1162