BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00009005
         (2297 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   788   0.0  
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              763   0.0  
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe...   763   0.0  
gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu...   754   0.0  
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   710   0.0  
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   709   0.0  
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   707   0.0  
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   707   0.0  
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   706   0.0  
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   706   0.0  
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub...   698   0.0  
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...   692   0.0  
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   692   0.0  
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   685   0.0  
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   667   0.0  
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no...   667   0.0  
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub...   661   0.0  
gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus...   660   0.0  
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub...   655   0.0  
gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus...   654   0.0  

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  788 bits (2035), Expect = 0.0
 Identities = 412/741 (55%), Positives = 524/741 (70%), Gaps = 17/741 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQQ + LGLQHS+VPLSFK+PH+LSC AWN  K  G      D  + ++SYIP
Sbjct: 767  KGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPG--LIQNDTSEYAESYIP 824

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
            YAVVENSFL GLNPLECFVHSVTSRDSSF +NAD+PGTL RRLMFFMRD++ AYDGTVR+
Sbjct: 825  YAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRN 884

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
            AYGNQL QFSY+I+ TS   D     EDT A + +GGQPVG             ALDQPI
Sbjct: 885  AYGNQLVQFSYNIEHTSTPSD--GINEDTCAYD-MGGQPVGSISACAISEAAYSALDQPI 941

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE SPL NLK+VLE GL++S   +T +L+LSKKL + +HGFEY ALE+KNHLE LLF 
Sbjct: 942  SLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFS 1001

Query: 1575 DIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAF---- 1411
            DIVSTVMIV S +  S+   SPWVCHF++C++  K+R LK HSIIDAL+ KC SA     
Sbjct: 1002 DIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESK 1061

Query: 1410 --LPKLQIAVKNCVMDDMGKEKT--FCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIK 1243
              LP LQI  K+C +D M KE +  FC+T S +  S  + I+LDTVRD+++P LL +V+K
Sbjct: 1062 INLPDLQITSKDCFVD-MEKEDSDCFCITVSIVN-SKKSCIQLDTVRDLVIPFLLGAVVK 1119

Query: 1242 GRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPIMEL 1063
            G ++ KKVDILWND  D       +S SG L L+V++S +C     W +LMD CL IM++
Sbjct: 1120 GLLDVKKVDILWNDNPDSDVL---KSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDM 1176

Query: 1062 IDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGEF 883
            IDW RSHPD++HD+F  YGID  W+ FL +LKSA++D+GKT+LP+HL+LVA CLS TGEF
Sbjct: 1177 IDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEF 1236

Query: 882  VGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPPL 703
            VGL+AKGMARQK   S+SSPFMQ CFSSPG  FIK+ K    D L GSLD+LAWGK+P +
Sbjct: 1237 VGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSV 1296

Query: 702  GTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRL-- 529
            G+G  F+I+Y++K HE+ +P DIY LL    S H +N K+KVP        K GA  +  
Sbjct: 1297 GSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYA 1356

Query: 528  ------KELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKK 367
                  K   S E+     ISK++L + ++LNDI+KLS+ L+ +L KY I+ +L E+DK 
Sbjct: 1357 NGDSASKGCKSLEK-----ISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKT 1411

Query: 366  MLKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALE 187
             L  AL+FHPR  EKIG G   IKV +H  Y + RCF L R DG+ EDFSYHKCVHGALE
Sbjct: 1412 TLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALE 1471

Query: 186  MFAPQKAKNYKSRWLKNNTAN 124
            +  P++A++Y+SRWL +  ++
Sbjct: 1472 IIDPRRARSYQSRWLTSEVSS 1492


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  763 bits (1970), Expect = 0.0
 Identities = 405/735 (55%), Positives = 513/735 (69%), Gaps = 17/735 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQQ + LGLQHS+VPLSFK+PH+LSC AWN  K  G      D  + ++SYIP
Sbjct: 636  KGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPG--LIQNDTSEYAESYIP 693

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
            YAVVENSFL GLNPLECFVHSVTSRDSSF +NAD+PGTL RRLMFFMRD++ AYDGTVR+
Sbjct: 694  YAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRN 753

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
            AYGNQL QFSY+I+ TS   D     EDT A + +GGQPVG             ALDQPI
Sbjct: 754  AYGNQLVQFSYNIEHTSTPSD--GINEDTCAYD-MGGQPVGSISACAISEAAYSALDQPI 810

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE SPL NLK+VLE GL++S   +T +L+LSKKL + +HGFEY ALE+KNHLE LLF 
Sbjct: 811  SLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFS 870

Query: 1575 DIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAF---- 1411
            DIVSTVMIV S +  S+   SPWVCHF++C++  K+R LK HSIIDAL+ KC SA     
Sbjct: 871  DIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESK 930

Query: 1410 --LPKLQIAVKNCVMDDMGKEKT--FCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIK 1243
              LP LQI  K+C +D M KE +  FC+T S +  S  + I+LDTVRD+++P LL +V+K
Sbjct: 931  INLPDLQITSKDCFVD-MEKEDSDCFCITVSIVN-SKKSCIQLDTVRDLVIPFLLGAVVK 988

Query: 1242 GRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPIMEL 1063
            G    K  D+L             +S SG L L+V++S +C     W +LMD CL IM++
Sbjct: 989  GCC-IKNSDVL-------------KSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDM 1034

Query: 1062 IDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGEF 883
            IDW RSHPD++HD+F  YGID  W+ FL +LKSA++D+GKT+LP+HL+LVA CLS TGEF
Sbjct: 1035 IDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEF 1094

Query: 882  VGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPPL 703
            VGL+AKGMARQK   S+SSPFMQ CFSSPG  FIK+ K    D L GSLD+LAWGK+P +
Sbjct: 1095 VGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSV 1154

Query: 702  GTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRL-- 529
            G+G  F+I+Y++K HE+ +P DIY LL    S H +N K+KVP        K GA  +  
Sbjct: 1155 GSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYA 1214

Query: 528  ------KELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKK 367
                  K   S E+     ISK++L + ++LNDI+KLS+ L+ +L KY I+ +L E+DK 
Sbjct: 1215 NGDSASKGCKSLEK-----ISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKT 1269

Query: 366  MLKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALE 187
             L  AL+FHPR  EKIG G   IKV +H  Y + RCF L R DG+ EDFSYHKCVHGALE
Sbjct: 1270 TLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALE 1329

Query: 186  MFAPQKAKNYKSRWL 142
            +  P++A++Y+SRWL
Sbjct: 1330 IIDPRRARSYQSRWL 1344


>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  763 bits (1969), Expect = 0.0
 Identities = 386/730 (52%), Positives = 516/730 (70%), Gaps = 10/730 (1%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ +M LGLQHS++PLSF++P++LSC AWNN KA     + +   +C +SYIP
Sbjct: 634  KGNLQKLVQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTYECVESYIP 693

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV++SFL GLNPLECFVHSVTSRDSSF  NAD+PGTL R+LMF MRD+++AYDGTVR+
Sbjct: 694  SAVVKSSFLTGLNPLECFVHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYTAYDGTVRN 753

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
            AYGNQL QFSYDI        + S+ + T AC+ +GGQPVG             ALDQP+
Sbjct: 754  AYGNQLVQFSYDIDMDKSDSTSTSHAKSTTACDGIGGQPVGSLSACALSEAAYSALDQPV 813

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE+SPL NLK +LE G K+S+  +T +L+LSKKL R RHGFEY ALE+KNHL GL F 
Sbjct: 814  SLLETSPLLNLKNILECGSKKSSAKQTLSLFLSKKLGRRRHGFEYGALEVKNHLVGLTFS 873

Query: 1575 DIVSTVMIVHSSEPSSQ-ALSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAFLPKL 1399
            DIVSTVMI+ SS+ +SQ   SPWV HF+ICK+ V++RRLK+HS++D+L+ +C SA  P+L
Sbjct: 874  DIVSTVMIIFSSQSNSQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSA-RPEL 932

Query: 1398 QIAVKNCVMDDM---------GKEKTFCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVI 1246
            +I +++ ++            G + TFC+T +  E S  +  +LD  RD+++P LL +V+
Sbjct: 933  KIVLRSLLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVV 992

Query: 1245 KGRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPIME 1066
            KG +E KKVDILWND   E K  +    SGEL L+V +S      RLW++LMD CL IM+
Sbjct: 993  KGFLEVKKVDILWNDHPRESKKIH--GSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMD 1050

Query: 1065 LIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGE 886
            LIDW+RSHPD++HD    YGID  W+ FL NL++A ND+GK ILPQHL+LVADCLS TGE
Sbjct: 1051 LIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGE 1110

Query: 885  FVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPP 706
            FVGL+AKG+A+QK   SVSSPF+QACFSSPG  FIK+AK G VD L GS+++LAWG  PP
Sbjct: 1111 FVGLNAKGIAQQKGHTSVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPP 1170

Query: 705  LGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRLK 526
             GTG +F+I+Y+ +   + KP + Y LL    S    N        FE  K  +  +   
Sbjct: 1171 SGTGRQFDILYSKEGLNLSKPLNPYDLLGSQISSSREN-------AFETSKAWNNTLDKC 1223

Query: 525  ELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKMLKTALH 346
            ++ S    ++  + K+++   +T+NDI+K +QTL+ +L KY I+E L E DK +LK ALH
Sbjct: 1224 DVTSIGLEKSESVFKSVIRKYLTINDIQKWTQTLKRILRKYDINESLTEGDKSILKMALH 1283

Query: 345  FHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEMFAPQKA 166
            FHP   +K+GSGV  IKVG HP +++ARCF+L R D + EDFSYHKCV GALE+ AP++A
Sbjct: 1284 FHPHKVDKMGSGVQDIKVGQHPKHENARCFMLVRIDRTEEDFSYHKCVLGALEIVAPERA 1343

Query: 165  KNYKSRWLKN 136
            K+Y+S+W+ +
Sbjct: 1344 KSYRSKWMNH 1353


>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao]
          Length = 1484

 Score =  754 bits (1946), Expect = 0.0
 Identities = 379/738 (51%), Positives = 523/738 (70%), Gaps = 16/738 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ ++ LGLQHS+VPLSF+ PH+LSC AWNN K+HG + +  D  + +K+YIP
Sbjct: 748  KGNLLKLVQHSLCLGLQHSLVPLSFRFPHQLSCAAWNNQKSHGLTQKVDDTAESAKNYIP 807

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
            YAVVE+SF+ GLNPLE FVHSVTSRDSSF +NAD+PGTL+RRLMFFMRD+++AYDGTVR+
Sbjct: 808  YAVVESSFMTGLNPLESFVHSVTSRDSSFSDNADLPGTLSRRLMFFMRDLYTAYDGTVRN 867

Query: 1935 AYGNQLFQFSYDIKGTSLSYDT---GSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALD 1765
            +YG+ + QF YDI   + S  +   G  +E +     +GGQPVG             ALD
Sbjct: 868  SYGDLVVQFCYDIDKDASSPTSCAHGLISESSTIPEGIGGQPVGSLSACAISEAAYSALD 927

Query: 1764 QPISVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGL 1585
            QP+S+LE+SPL NLK+V+E G KRSN  +T TL+LS KL R RHG EYAALE+KNHLE L
Sbjct: 928  QPVSLLETSPLLNLKRVVECGSKRSNADQTMTLFLSNKLGRKRHGSEYAALEVKNHLERL 987

Query: 1584 LFKDIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSA-- 1414
             F DIV+TV I+ S +   +   +PWVCHF++CKDT+KRR+LK+ SIID+LH  C +A  
Sbjct: 988  TFSDIVTTVSIIFSPQMYRENHFTPWVCHFHVCKDTMKRRQLKVQSIIDSLHMHCTTAKT 1047

Query: 1413 ----FLPKLQIAVKN--CVMDDMGKEK-TFCLTASFIETSSTNRIKLDTVRDVLMPDLLQ 1255
                 LP +QI      C   DM  E  TFC+T + +E S ++ ++LD +RD+++P LL+
Sbjct: 1048 MWKISLPDMQITSNGRACSHIDMPNEDDTFCITVTIVEYSKSSHMELDVIRDMVIPYLLE 1107

Query: 1254 SVIKGRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLP 1075
            +VIKG  E KKVDILW D+    K   ++S  GEL L+VF+S +   T+LW +LM+ CL 
Sbjct: 1108 AVIKGFPEIKKVDILWKDRLKVSKP--HKSSCGELYLRVFVSGDFGITKLWGVLMNDCLQ 1165

Query: 1074 IMELIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSV 895
            IM++IDWTRSHPD+++ +   YGID  W+ FL NLKSA++D GKTIL +HL++VA+CLS 
Sbjct: 1166 IMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSA 1225

Query: 894  TGEFVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGK 715
            TGEFVGL++KG+ +Q+    VSSPFMQACFS+P  SF+K+AK GA D LQG++D+LAWG+
Sbjct: 1226 TGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGR 1285

Query: 714  VPPLGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAM 535
            +P +GTG +F+I+Y+ K+  + +P D+Y LL  + S   ++ + +VP       +K G++
Sbjct: 1286 IPHIGTGGQFDIIYSVKDQRLAEPVDVYKLLGSSISSQKQDVEFEVPKALNFKSEKYGSL 1345

Query: 534  RLKEL--PSRERFRNLGIS-KALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKM 364
             +  L   + E  + +    +++    +TL+DI++LS+ LR +L+KY ID  L E D   
Sbjct: 1346 LIDALGDSASEELKKIETKRRSIWRELLTLDDIQRLSRALRNILHKYPIDHRLSEADWNT 1405

Query: 363  LKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEM 184
            L  AL+FHPR  EKIGSG   IKVG+HP + +ARCF L R DG++ DFSYHKCV GALE+
Sbjct: 1406 LMMALYFHPRRDEKIGSGAQEIKVGYHPEHANARCFSLVRTDGTIVDFSYHKCVLGALEI 1465

Query: 183  FAPQKAKNYKSRWLKNNT 130
             AP +AK+YKS+WL++ +
Sbjct: 1466 IAPHRAKSYKSKWLQSGS 1483


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  710 bits (1833), Expect = 0.0
 Identities = 375/731 (51%), Positives = 503/731 (68%), Gaps = 12/731 (1%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDAL-DCSKSYI 2119
            + +L K+VQ +M LGLQHS+V LSF LPHKLSC AWN+ K     +  +D L D ++S+I
Sbjct: 745  KGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAAWNSQKM--PRYIQKDGLPDRTQSFI 802

Query: 2118 PYAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVR 1939
            PYAVVENSFL+GLNP ECF HSVT+RDSSF +NA+VPGTL R+L F MRD+++AYDGTVR
Sbjct: 803  PYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVR 862

Query: 1938 SAYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQP 1759
            +AYGNQL QF YDI   +    + S +E+ +    +GG PVG             ALDQP
Sbjct: 863  NAYGNQLVQFCYDIDRPT----SESESENNNRDRGIGGHPVGSLAACAISEAAYSALDQP 918

Query: 1758 ISVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLF 1579
            IS+LE+SPL NLK+VLE G KR++T +T +L+LS+KL +  +GFEY AL +KNHLE ++F
Sbjct: 919  ISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMF 978

Query: 1578 KDIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAF--- 1411
            KDIVS+VMI+ S  PS +   SPWVCHF++CK+ +K+RRLK++S+I +L+ +C S     
Sbjct: 979  KDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEG 1038

Query: 1410 ---LPKLQIAVKNCVMDDMGKEK--TFCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVI 1246
               LP LQI  ++C + D   E   T CLT +  E +  + ++LD ++D+L+  LL +VI
Sbjct: 1039 RMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTVI 1098

Query: 1245 KGRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPIME 1066
            +G  E  +VDI WND+   PK    R   GEL L+V +S    + R W  LM+ CLPIM+
Sbjct: 1099 RGFTEIDRVDITWNDR---PKVPKPRCSHGELYLRVTMSGEGNS-RFWATLMNNCLPIMD 1154

Query: 1065 LIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGE 886
            LIDWTRSHPD+ H +   YGID  W+ FL +L+SA  DVGKTI  +HL+LV++ LS TGE
Sbjct: 1155 LIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSATGE 1214

Query: 885  FVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPP 706
            FVGL+ KG+  Q+    V +PFMQACFSSPG   IK+AKAG  D L GSLD+LAWG++P 
Sbjct: 1215 FVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPS 1274

Query: 705  LGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRLK 526
            LGTG +F+I+Y+ K HE+ KP D+Y+LL    +   +NTK++  D   + +  S  + LK
Sbjct: 1275 LGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISEKYSAQLMLK 1334

Query: 525  ELPS--RERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKMLKTA 352
               S  +   R   +SK++L   +TLNDI+KLS  LR +L+KYS++E L+EVDK  L  A
Sbjct: 1335 NGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLMMA 1394

Query: 351  LHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEMFAPQ 172
            L+FHP   EKIG G   IKVG H  Y++ RCF+L R DG+ EDFSYHKCV GALE+ AP 
Sbjct: 1395 LYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPH 1454

Query: 171  KAKNYKSRWLK 139
            + K Y+S+W++
Sbjct: 1455 RVKGYQSKWMQ 1465


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  709 bits (1830), Expect = 0.0
 Identities = 380/739 (51%), Positives = 503/739 (68%), Gaps = 16/739 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ ++ LGLQHS+ PLSF+ PH+LSC AWN  +A        D  +C+KSYIP
Sbjct: 733  KGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG-------DNTECAKSYIP 785

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVVENSFL GLNPLECF+HSVTSRDSSF +NAD+PGTL RRLMFFMRD+ +AYDGTVR+
Sbjct: 786  SAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRN 845

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
            AYGNQ+ QFSY+I+GTS    TG           +G QPVG             ALDQPI
Sbjct: 846  AYGNQIVQFSYNIEGTSTP--TGE----------IGDQPVGSLSACAISEAAYSALDQPI 893

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE+SPL NLK VLE G K+SN  +T +L+LS KL + RHGFEY ALE+KNHLE L+  
Sbjct: 894  SLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLS 953

Query: 1575 DIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSA----- 1414
            DIVST MI++S +  S    SPW+CHF++ K+ +KR  LK HSIID+L+++C +A     
Sbjct: 954  DIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELK 1013

Query: 1413 -FLPKLQIAVKNCVMDDMGKE--KTFCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIK 1243
              +P + I+ K+C   +M KE    FC+T   +E      I L+T++  +MP LL++V+K
Sbjct: 1014 ISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVK 1073

Query: 1242 GRMEFKKVDILWNDQTDEPKATNNRSPS-GELCLKVFLSTNCRATRLWNLLMDCCLPIME 1066
            G  E KKVDILW D+    KA+ +   S GEL L+V +S  C  T LW+ LM+ C  IM+
Sbjct: 1074 GFREIKKVDILWKDKQ---KASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMD 1130

Query: 1065 LIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGE 886
            +IDWTRSHPD++      YGID   + FL NL+SA++D GK ILP+HL++VA+ LS TGE
Sbjct: 1131 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1190

Query: 885  FVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPP 706
            FVGL+AKG+A Q+   SVSSPF+QA FS+PG SFIK+AKAGAVD LQGS+D+L WGKVP 
Sbjct: 1191 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPS 1250

Query: 705  LGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRLK 526
            +GTG  F+I+Y+ +   + KP D+Y+LL+   S   +N KLKV     ++ DK GA    
Sbjct: 1251 VGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVS-SKQNEKLKVCKAQGLISDKCGAKF-- 1307

Query: 525  ELPSRERFRNLG------ISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKM 364
                   F+ LG      IS+ +L    T ND+ +LS  L+ +L+KYSI + L E DK  
Sbjct: 1308 ---GDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTT 1364

Query: 363  LKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEM 184
            +  AL+FHPR  EK+G     I+V +HP ++++RCF L R+DGS+EDFSYHKCV GALE+
Sbjct: 1365 VIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEI 1424

Query: 183  FAPQKAKNYKSRWLKNNTA 127
             AP+KA+ Y+++W +  TA
Sbjct: 1425 IAPEKAEIYRAKWKRLGTA 1443


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  707 bits (1826), Expect = 0.0
 Identities = 386/741 (52%), Positives = 499/741 (67%), Gaps = 18/741 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ +M LGLQ S+VP+SF++P +LSC+AWNN K+H    +     +C  SYIP
Sbjct: 507  KGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIP 566

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV++SFLAGLNPLECFVHS+T+RDSSF  +ADV GTLNR+LMFFMRD++  YDGTVR+
Sbjct: 567  SAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRN 626

Query: 1935 AYGNQLFQFSY-DIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQP 1759
            AYGNQ+ QFSY + +  + +  TG   E  +  +A+GG PVG             ALDQP
Sbjct: 627  AYGNQIVQFSYYEAEKIASTKGTGDALESHN--HAIGGHPVGSLAACAISEAAYSALDQP 684

Query: 1758 ISVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLF 1579
            +S LESSPL NLKK+LESG    +  KTA+++LSK+L R  HGFEY ALE+K HLE LL 
Sbjct: 685  VSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLL 744

Query: 1578 KDIVSTVMIVHSSEPSSQALS-PWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAF--- 1411
             ++VSTVMI  S E      + PWVCHF+I K+ VK RRLKL SI+DAL+ +  +A    
Sbjct: 745  SEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKG 804

Query: 1410 ---LPKLQIAVKNCVMDDMGKEKT-FCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIK 1243
               LP L I  K+C + +  KEK+  C+T S +ETS      LDT+RDV++P LL++VIK
Sbjct: 805  GNDLPNLHITCKDCSVAEARKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIK 864

Query: 1242 GRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPIMEL 1063
            G   FKKVDILW +     K++  R  +GEL L+VF+S +C   + WN L+D CL I +L
Sbjct: 865  GFSAFKKVDILWKELPSPSKSS--RGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDL 922

Query: 1062 IDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGEF 883
            IDW RS+PDD+HD+   YGIDV+W  FL  L SAV++ GK ILP+HL+L AD L+ TGEF
Sbjct: 923  IDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEF 982

Query: 882  VGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPPL 703
            V LSAKG+  Q+    V SPFMQACFS+PG SF+++AK G  D LQGSL+SLAWGK P +
Sbjct: 983  VPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSI 1042

Query: 702  GTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRLKE 523
            GTG+ F+I+Y+ K +E  +P D+Y+LL      H+ +   KV    +V  D+ G M  K 
Sbjct: 1043 GTGSSFDIIYSGKGYEPAEPIDVYTLL----QNHVTSGTPKV----KVTLDEDGGMDGKS 1094

Query: 522  LPSR-ERFRNLGISKALLEAQIT-------LNDIKKLSQTLRGMLNKYSIDEELDEVDKK 367
            L  R +R  +L       E  IT        NDIKKLSQ+L+ ML+KY+ID EL+E DK 
Sbjct: 1095 LARRLDRLDDLNKKSCKSEWSITKLRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKC 1154

Query: 366  MLKTALHFHPRSKEKIGSGV-VTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGAL 190
            +   AL FHPR  EKIG G    IK+G+H  Y+D+RCF+L R DGSVEDFSY KC+  AL
Sbjct: 1155 IAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHAL 1214

Query: 189  EMFAPQKAKNYKSRWLKNNTA 127
            E+ APQKAK   SRWL   +A
Sbjct: 1215 ELIAPQKAKT--SRWLNRASA 1233


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  707 bits (1826), Expect = 0.0
 Identities = 386/741 (52%), Positives = 499/741 (67%), Gaps = 18/741 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ +M LGLQ S+VP+SF++P +LSC+AWNN K+H    +     +C  SYIP
Sbjct: 720  KGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIP 779

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV++SFLAGLNPLECFVHS+T+RDSSF  +ADV GTLNR+LMFFMRD++  YDGTVR+
Sbjct: 780  SAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRN 839

Query: 1935 AYGNQLFQFSY-DIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQP 1759
            AYGNQ+ QFSY + +  + +  TG   E  +  +A+GG PVG             ALDQP
Sbjct: 840  AYGNQIVQFSYYEAEKIASTKGTGDALESHN--HAIGGHPVGSLAACAISEAAYSALDQP 897

Query: 1758 ISVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLF 1579
            +S LESSPL NLKK+LESG    +  KTA+++LSK+L R  HGFEY ALE+K HLE LL 
Sbjct: 898  VSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLL 957

Query: 1578 KDIVSTVMIVHSSEPSSQALS-PWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAF--- 1411
             ++VSTVMI  S E      + PWVCHF+I K+ VK RRLKL SI+DAL+ +  +A    
Sbjct: 958  SEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKG 1017

Query: 1410 ---LPKLQIAVKNCVMDDMGKEKT-FCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIK 1243
               LP L I  K+C + +  KEK+  C+T S +ETS      LDT+RDV++P LL++VIK
Sbjct: 1018 GNDLPNLHITCKDCSVAEARKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIK 1077

Query: 1242 GRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPIMEL 1063
            G   FKKVDILW +     K++  R  +GEL L+VF+S +C   + WN L+D CL I +L
Sbjct: 1078 GFSAFKKVDILWKELPSPSKSS--RGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDL 1135

Query: 1062 IDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGEF 883
            IDW RS+PDD+HD+   YGIDV+W  FL  L SAV++ GK ILP+HL+L AD L+ TGEF
Sbjct: 1136 IDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEF 1195

Query: 882  VGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPPL 703
            V LSAKG+  Q+    V SPFMQACFS+PG SF+++AK G  D LQGSL+SLAWGK P +
Sbjct: 1196 VPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSI 1255

Query: 702  GTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRLKE 523
            GTG+ F+I+Y+ K +E  +P D+Y+LL      H+ +   KV    +V  D+ G M  K 
Sbjct: 1256 GTGSSFDIIYSGKGYEPAEPIDVYTLL----QNHVTSGTPKV----KVTLDEDGGMDGKS 1307

Query: 522  LPSR-ERFRNLGISKALLEAQIT-------LNDIKKLSQTLRGMLNKYSIDEELDEVDKK 367
            L  R +R  +L       E  IT        NDIKKLSQ+L+ ML+KY+ID EL+E DK 
Sbjct: 1308 LARRLDRLDDLNKKSCKSEWSITKLRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKC 1367

Query: 366  MLKTALHFHPRSKEKIGSGV-VTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGAL 190
            +   AL FHPR  EKIG G    IK+G+H  Y+D+RCF+L R DGSVEDFSY KC+  AL
Sbjct: 1368 IAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHAL 1427

Query: 189  EMFAPQKAKNYKSRWLKNNTA 127
            E+ APQKAK   SRWL   +A
Sbjct: 1428 ELIAPQKAKT--SRWLNRASA 1446


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  706 bits (1823), Expect = 0.0
 Identities = 379/739 (51%), Positives = 502/739 (67%), Gaps = 16/739 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ ++ LGLQHS+ PLSF+ PH+LSC AWN  +A        D  +C+KSYIP
Sbjct: 733  KGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG-------DNTECAKSYIP 785

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV NSFL GLNPLECF+HSVTSRDSSF +NAD+PGTL RRLMFFMRD+ +AYDGTVR+
Sbjct: 786  SAVVANSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRN 845

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
            AYGNQ+ QFSY+I+GTS    TG           +GGQ VG             ALDQPI
Sbjct: 846  AYGNQIVQFSYNIEGTSTP--TGE----------IGGQSVGSLSACAISEAAYSALDQPI 893

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE+SPL NLK VLE G K+SN  +T +L+LS KL + RHGFEY ALE+KNHLE L+  
Sbjct: 894  SLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLS 953

Query: 1575 DIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSA----- 1414
            DIVST MI++S +  S    SPW+CHF++ K+ +KR  LK HSIID+L+++C +A     
Sbjct: 954  DIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELK 1013

Query: 1413 -FLPKLQIAVKNCVMDDMGKE--KTFCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIK 1243
              +P + I+ K+C   +M KE    FC+T   +E      I L+T++  +MP LL++V+K
Sbjct: 1014 ISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVK 1073

Query: 1242 GRMEFKKVDILWNDQTDEPKATNNRSPS-GELCLKVFLSTNCRATRLWNLLMDCCLPIME 1066
            G  E KKVDILW D+    KA+ +   S GEL L+V +S  C  T LW+ LM+ C  IM+
Sbjct: 1074 GFREIKKVDILWKDKQ---KASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMD 1130

Query: 1065 LIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGE 886
            +IDWTRSHPD++      YGID   + FL NL+SA++D GK ILP+HL++VA+ LS TGE
Sbjct: 1131 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1190

Query: 885  FVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPP 706
            FVGL+AKG+A Q+   SVSSPF+QA FS+PG SFIK+AKAGAVD LQGS+D+L WGKVP 
Sbjct: 1191 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPS 1250

Query: 705  LGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRLK 526
            +GTG  F+I+Y+ +   + KP D+Y+LL+   S   +N KLKV     ++ DK GA    
Sbjct: 1251 VGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVS-SKQNEKLKVCKAQGLISDKCGAKF-- 1307

Query: 525  ELPSRERFRNLG------ISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKM 364
                   F+ LG      IS+ +L    T ND+ +LS  L+ +L+KYSI + L E DK  
Sbjct: 1308 ---GDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTT 1364

Query: 363  LKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEM 184
            +  AL+FHPR  EK+G     I+V +HP ++++RCF L R+DGS+EDFSYHKCV GALE+
Sbjct: 1365 VIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEI 1424

Query: 183  FAPQKAKNYKSRWLKNNTA 127
             AP+KA+ Y+++W +  TA
Sbjct: 1425 IAPEKAEIYRAKWKRLGTA 1443


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  706 bits (1823), Expect = 0.0
 Identities = 379/739 (51%), Positives = 502/739 (67%), Gaps = 16/739 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ ++ LGLQHS+ PLSF+ PH+LSC AWN  +A        D  +C+KSYIP
Sbjct: 771  KGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG-------DNTECAKSYIP 823

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV NSFL GLNPLECF+HSVTSRDSSF +NAD+PGTL RRLMFFMRD+ +AYDGTVR+
Sbjct: 824  SAVVANSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRN 883

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
            AYGNQ+ QFSY+I+GTS    TG           +GGQ VG             ALDQPI
Sbjct: 884  AYGNQIVQFSYNIEGTSTP--TGE----------IGGQSVGSLSACAISEAAYSALDQPI 931

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE+SPL NLK VLE G K+SN  +T +L+LS KL + RHGFEY ALE+KNHLE L+  
Sbjct: 932  SLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLS 991

Query: 1575 DIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSA----- 1414
            DIVST MI++S +  S    SPW+CHF++ K+ +KR  LK HSIID+L+++C +A     
Sbjct: 992  DIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELK 1051

Query: 1413 -FLPKLQIAVKNCVMDDMGKE--KTFCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIK 1243
              +P + I+ K+C   +M KE    FC+T   +E      I L+T++  +MP LL++V+K
Sbjct: 1052 ISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVK 1111

Query: 1242 GRMEFKKVDILWNDQTDEPKATNNRSPS-GELCLKVFLSTNCRATRLWNLLMDCCLPIME 1066
            G  E KKVDILW D+    KA+ +   S GEL L+V +S  C  T LW+ LM+ C  IM+
Sbjct: 1112 GFREIKKVDILWKDKQ---KASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMD 1168

Query: 1065 LIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGE 886
            +IDWTRSHPD++      YGID   + FL NL+SA++D GK ILP+HL++VA+ LS TGE
Sbjct: 1169 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1228

Query: 885  FVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPP 706
            FVGL+AKG+A Q+   SVSSPF+QA FS+PG SFIK+AKAGAVD LQGS+D+L WGKVP 
Sbjct: 1229 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPS 1288

Query: 705  LGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRLK 526
            +GTG  F+I+Y+ +   + KP D+Y+LL+   S   +N KLKV     ++ DK GA    
Sbjct: 1289 VGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVS-SKQNEKLKVCKAQGLISDKCGAKF-- 1345

Query: 525  ELPSRERFRNLG------ISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKM 364
                   F+ LG      IS+ +L    T ND+ +LS  L+ +L+KYSI + L E DK  
Sbjct: 1346 ---GDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTT 1402

Query: 363  LKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEM 184
            +  AL+FHPR  EK+G     I+V +HP ++++RCF L R+DGS+EDFSYHKCV GALE+
Sbjct: 1403 VIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEI 1462

Query: 183  FAPQKAKNYKSRWLKNNTA 127
             AP+KA+ Y+++W +  TA
Sbjct: 1463 IAPEKAEIYRAKWKRLGTA 1481


>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1438

 Score =  698 bits (1801), Expect = 0.0
 Identities = 366/729 (50%), Positives = 491/729 (67%), Gaps = 11/729 (1%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + ++ K+VQ  M LGLQHS+VPLSFK P++LSC+AWN+ KA G         +  +SYIP
Sbjct: 726  KGNMLKLVQHCMCLGLQHSLVPLSFKFPNQLSCDAWNDQKARGIVQEVGRNFESIESYIP 785

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV++SFL GLNP+ECFVHSVTSRD SF  NA++PGTLNR+LM+FMRD+H+AYDGTVR+
Sbjct: 786  SAVVKSSFLTGLNPVECFVHSVTSRDGSFSNNAELPGTLNRKLMYFMRDLHTAYDGTVRN 845

Query: 1935 AYGNQLFQFSYDI-KGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQP 1759
            AYGNQL QFSYDI +G S +  T + +      N  G QPVG             ALDQP
Sbjct: 846  AYGNQLIQFSYDIDEGISTADSTTNSSYAKSVINCGGSQPVGALSACAISEAAYSALDQP 905

Query: 1758 ISVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLF 1579
            +S+LE+SPL NLK +LE G KRS+  +T +L+LS KL R RHGFEY ALE+KNHLEGL F
Sbjct: 906  VSLLEASPLLNLKNILECGSKRSSAKQTMSLFLSDKLDRHRHGFEYGALEVKNHLEGLNF 965

Query: 1578 KDIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAFLP- 1405
             DIVSTVMI+ SS+  S+   SPWV HF+I K+ V+RRRL + SII+AL+  C SA    
Sbjct: 966  SDIVSTVMIMFSSQSGSKMRFSPWVSHFHISKEIVRRRRLNVQSIIEALYAMCNSAGADL 1025

Query: 1404 KLQIAVKNCVMDDMGKEKTFCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIKGRMEFK 1225
            K+ I  + C       + TFC++ +  E  + +  +LD  R +++P LL++V+KG +E K
Sbjct: 1026 KIMIIGRECDCCSTPND-TFCISVTLTEKYNNSSKELDKTRVLVIPFLLKTVVKGFLEIK 1084

Query: 1224 KVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCR-ATRLWNLLMDCCLPIMELIDWTR 1048
            KVDILW D+            SGELCL+V +S   R  T LWN+LMD C+P+M++IDW+R
Sbjct: 1085 KVDILWIDRPGS---------SGELCLRVSMSGKTRKGTTLWNMLMDDCIPVMDMIDWSR 1135

Query: 1047 SHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGEFVGLSA 868
            SHPD++HD+ T YGIDV  + FL  L+SA  DVGKTILPQHL+LVADCLS TGEFV L+A
Sbjct: 1136 SHPDNVHDICTAYGIDVGQKHFLNKLESATKDVGKTILPQHLLLVADCLSATGEFVSLNA 1195

Query: 867  KGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPPLGTGAK 688
            KG+ +Q    SV +PFMQACFS+PG   +K+AK G VD LQGSLD+L WG  P LG+G +
Sbjct: 1196 KGIGQQLEHASVIAPFMQACFSTPGPCLVKAAKVGVVDNLQGSLDALTWGNTPSLGSGGQ 1255

Query: 687  FEIVYNSKEHEVEKPTDIYSLLTC------NKSFHMRNTKLKVPDGFEVVK-DKSGAMRL 529
            F+I++ SK     KP  +Y LL+          F M +  + + D F      K+G +R 
Sbjct: 1256 FDIIF-SKGPVSSKPIKVYDLLSSQIITNPQNGFEMSDAPIHLSDKFVAPNMYKNGYLRK 1314

Query: 528  KELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKMLKTAL 349
             E           I+K++L   +T+ DI +LSQ L+ +L KY ++E ++++DK++L   L
Sbjct: 1315 WE----------SITKSVLRENLTIQDIDRLSQALKNILQKYDVNERINDMDKQVLMMVL 1364

Query: 348  HFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEMFAPQK 169
             FHP    KIG G+  +KVGHHP +++ RCF+L R DG++ED SYHKC+ GA ++ AP +
Sbjct: 1365 RFHPHGDRKIGLGIKEVKVGHHPDHENVRCFMLVRTDGTIEDVSYHKCICGAYDIIAPHR 1424

Query: 168  AKNYKSRWL 142
            AK Y+ R++
Sbjct: 1425 AKGYRVRYM 1433


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
            lycopersicum]
          Length = 1446

 Score =  692 bits (1786), Expect = 0.0
 Identities = 373/738 (50%), Positives = 495/738 (67%), Gaps = 15/738 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ  M LGLQ S+VP+SF++P +LSC+AWNN K+H    +     +C  SYIP
Sbjct: 720  KGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIP 779

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV++SFLAGLNPLECFVHS+T+RDSSF  +ADV GTLNR+LMFFMRD++  YDGTVR+
Sbjct: 780  SAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRN 839

Query: 1935 AYGNQLFQFSY-DIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQP 1759
            AYGNQ+ QFSY + +  + +  TG   E  +  +A+GG PVG             ALDQP
Sbjct: 840  AYGNQIVQFSYYEAEQIASTKVTGEALESHN--HAIGGHPVGSLAACAISEAAYCALDQP 897

Query: 1758 ISVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLF 1579
            +S LESSPL NLKK+LESG       KTA+++LSK+L R  HGFEY ALE+K HLE LL 
Sbjct: 898  VSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLL 957

Query: 1578 KDIVSTVMIVHSSEPSSQALS-PWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAF--- 1411
             ++VSTVMI  S E      + PWVCHF+I K+ VK RRLKL S++DAL+ +  +A    
Sbjct: 958  SEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKA 1017

Query: 1410 ---LPKLQIAVKNCVMDDMGKEKT-FCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIK 1243
               LP L I  K+C + ++ KEK+  C+T S +ETS      LDT+RDV++P LL++VIK
Sbjct: 1018 GNDLPNLHITCKDCSVAEVQKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIK 1077

Query: 1242 GRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPIMEL 1063
            G   FKKVDILW +     K++  R P+GEL L+VF+S +C   + WN L+D CL I +L
Sbjct: 1078 GFSAFKKVDILWKELPSPSKSS--RGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDL 1135

Query: 1062 IDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGEF 883
            IDW RS+PDD+HD+   YGIDV+W  FL  L SAV++ GK ILP+HL+L AD L+ TGEF
Sbjct: 1136 IDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEF 1195

Query: 882  VGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPPL 703
            V LSAKG+  Q+    V SPFMQACF++PG SF+++AK G  D LQGSL+SLAWGK P +
Sbjct: 1196 VPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSI 1255

Query: 702  GTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKV-----PDGFEVVKDKSGA 538
            GTG+ F+I+Y+ K +E+ +  ++Y+LL    +    N K+ +      DG  +V+     
Sbjct: 1256 GTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDGGMDGMSLVRRLD-- 1313

Query: 537  MRLKELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKMLK 358
             RL +L  +     L  +K  L +  + NDIKKLSQ+L+ ML+KY I  EL+E DK +  
Sbjct: 1314 -RLDDLDKKSCKSELSFTK--LRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAM 1370

Query: 357  TALHFHPRSKEKIGSGV-VTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEMF 181
             AL FHPR  EKIG G    IK+G+H  ++ +RCF++ R D +VEDFSY KC+  ALE+ 
Sbjct: 1371 MALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHALELI 1430

Query: 180  APQKAKNYKSRWLKNNTA 127
            APQKAK   SRWL   +A
Sbjct: 1431 APQKAKT--SRWLNGASA 1446


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  692 bits (1786), Expect = 0.0
 Identities = 373/738 (50%), Positives = 495/738 (67%), Gaps = 15/738 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ  M LGLQ S+VP+SF++P +LSC+AWNN K+H    +     +C  SYIP
Sbjct: 412  KGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIP 471

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV++SFLAGLNPLECFVHS+T+RDSSF  +ADV GTLNR+LMFFMRD++  YDGTVR+
Sbjct: 472  SAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRN 531

Query: 1935 AYGNQLFQFSY-DIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQP 1759
            AYGNQ+ QFSY + +  + +  TG   E  +  +A+GG PVG             ALDQP
Sbjct: 532  AYGNQIVQFSYYEAEQIASTKVTGEALESHN--HAIGGHPVGSLAACAISEAAYCALDQP 589

Query: 1758 ISVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLF 1579
            +S LESSPL NLKK+LESG       KTA+++LSK+L R  HGFEY ALE+K HLE LL 
Sbjct: 590  VSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLL 649

Query: 1578 KDIVSTVMIVHSSEPSSQALS-PWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAF--- 1411
             ++VSTVMI  S E      + PWVCHF+I K+ VK RRLKL S++DAL+ +  +A    
Sbjct: 650  SEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKA 709

Query: 1410 ---LPKLQIAVKNCVMDDMGKEKT-FCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIK 1243
               LP L I  K+C + ++ KEK+  C+T S +ETS      LDT+RDV++P LL++VIK
Sbjct: 710  GNDLPNLHITCKDCSVAEVQKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIK 769

Query: 1242 GRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPIMEL 1063
            G   FKKVDILW +     K++  R P+GEL L+VF+S +C   + WN L+D CL I +L
Sbjct: 770  GFSAFKKVDILWKELPSPSKSS--RGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDL 827

Query: 1062 IDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGEF 883
            IDW RS+PDD+HD+   YGIDV+W  FL  L SAV++ GK ILP+HL+L AD L+ TGEF
Sbjct: 828  IDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEF 887

Query: 882  VGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPPL 703
            V LSAKG+  Q+    V SPFMQACF++PG SF+++AK G  D LQGSL+SLAWGK P +
Sbjct: 888  VPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSI 947

Query: 702  GTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKV-----PDGFEVVKDKSGA 538
            GTG+ F+I+Y+ K +E+ +  ++Y+LL    +    N K+ +      DG  +V+     
Sbjct: 948  GTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDGGMDGMSLVRRLD-- 1005

Query: 537  MRLKELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKMLK 358
             RL +L  +     L  +K  L +  + NDIKKLSQ+L+ ML+KY I  EL+E DK +  
Sbjct: 1006 -RLDDLDKKSCKSELSFTK--LRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAM 1062

Query: 357  TALHFHPRSKEKIGSGV-VTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEMF 181
             AL FHPR  EKIG G    IK+G+H  ++ +RCF++ R D +VEDFSY KC+  ALE+ 
Sbjct: 1063 MALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHALELI 1122

Query: 180  APQKAKNYKSRWLKNNTA 127
            APQKAK   SRWL   +A
Sbjct: 1123 APQKAKT--SRWLNGASA 1138


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score =  685 bits (1768), Expect = 0.0
 Identities = 369/716 (51%), Positives = 481/716 (67%), Gaps = 4/716 (0%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ +M LGLQHS+VPLSF++P +LSC+AWN  KA       ++A++C++SYIP
Sbjct: 739  KGNLLKVVQHSMCLGLQHSLVPLSFRMPLQLSCDAWNKQKA-------ENAVECARSYIP 791

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVVE  FL GLNPLECFVHSVTSR+SSF +NAD+PGTL RRLMFFMRD+H+AYDG+VRS
Sbjct: 792  SAVVEGCFLTGLNPLECFVHSVTSRESSFSDNADLPGTLTRRLMFFMRDVHAAYDGSVRS 851

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
            AYGNQL QFSY+I     S +T    +  D  + + G+PVG             ALDQPI
Sbjct: 852  AYGNQLIQFSYNID-EGRSAETYGTAKIVDNYDGMAGKPVGSLAACSISEAAYSALDQPI 910

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE SPL NLK VLE GLK+SN  K+ +L+LS+KL R RHGFEY AL++++HLE LLF 
Sbjct: 911  SLLEKSPLLNLKNVLECGLKKSNAHKSMSLFLSEKLGRRRHGFEYGALKVQDHLERLLFS 970

Query: 1575 DIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLS-AFLPK 1402
            DIVS   I+ SS+  S+   SPWVCHF++ K+ +K+R L + SII+ L+ +C S   LP 
Sbjct: 971  DIVSVSRIIFSSQSESKTCFSPWVCHFHVYKEIMKKRNLNVDSIINILNGRCKSNTNLPN 1030

Query: 1401 LQIAVKNCVMDDMGKEK--TFCLTASFIETSSTNRIKLDTVRDVLMPDLLQSVIKGRMEF 1228
            +QI+ K+C + D  +EK  T C+T + +E S  +  +L T++D+++P LL++V+KG ME 
Sbjct: 1031 VQISCKSCSIADNHREKEETLCITVTIVERSKNSSTRLATIQDLMIPFLLETVLKGLMEI 1090

Query: 1227 KKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPIMELIDWTR 1048
             KVDILW D     K  N   P GEL L+V +S +   TRLWNLLMD CLPIM++IDWT 
Sbjct: 1091 NKVDILWKDWPRISKTHNQ--PYGELYLRVSMSADSEKTRLWNLLMDYCLPIMDMIDWTC 1148

Query: 1047 SHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVTGEFVGLSA 868
            S PD++ D    YGID  W+ FL  L+SA++DVGK++LP+H++LVA+CLSVTGEFVGL+A
Sbjct: 1149 SRPDNVRDFSLAYGIDAGWKFFLQRLESAISDVGKSVLPEHMLLVANCLSVTGEFVGLNA 1208

Query: 867  KGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKVPPLGTGAK 688
            KG  RQ+   SVSSPF+QACFSSPG  FIK+AKAG  D LQGSLD+LAWGKVP +GTG +
Sbjct: 1209 KGWKRQREDASVSSPFVQACFSSPGNCFIKAAKAGVKDDLQGSLDALAWGKVPSVGTG-Q 1267

Query: 687  FEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMRLKELPSRE 508
            F+IVY+ K         +  LL       ++  KLK P  F V+                
Sbjct: 1268 FDIVYSGK---------VKLLL----FLLVKRVKLKTPPSFVVL---------------- 1298

Query: 507  RFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKMLKTALHFHPRSK 328
                                   L   L  +L  YS+D++L+E DK  L  AL+FHPR +
Sbjct: 1299 --------------------TVFLETPLINLLVWYSVDQQLNEADKCTLTMALYFHPRKE 1338

Query: 327  EKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEMFAPQKAKN 160
            EKIGSG   IKV  HP Y+D+RCF L R DG++EDFSY KCV+GALE+ AP KA++
Sbjct: 1339 EKIGSGFKDIKVVKHPEYQDSRCFSLVRSDGTIEDFSYRKCVYGALEIIAPHKARS 1394


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  667 bits (1721), Expect = 0.0
 Identities = 368/759 (48%), Positives = 494/759 (65%), Gaps = 39/759 (5%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ +M LGLQHS+V LS+++P +LSC  WN+ K   S   + D L+  +SYI 
Sbjct: 898  KGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEMSSDTLEPKQSYIA 957

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
            +AVVE+SFL GLNPLECFVHSVT+RDSSF +NAD+PGTL RRLMFFMRDM+ AYDGTVR+
Sbjct: 958  HAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRN 1017

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
             YGNQL QFSYD +  S      SY  +    + +GG+PVG             AL QPI
Sbjct: 1018 LYGNQLIQFSYDAEEDS---SCDSYFRE----DIIGGEPVGALSACAVSEAAYSALSQPI 1070

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE+SPL NLK VLE G ++    +T +L+LS+K+ + R+GFEYAALE+KN+LE  +F 
Sbjct: 1071 SLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYMFS 1130

Query: 1575 DIVSTVMIVHSSEPSSQA-LSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLS------ 1417
            +IVSTVMI+ + +  SQ   SPWVCHF++ K+ V RR+L++HSIID+L+++  S      
Sbjct: 1131 NIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDSFRRESK 1190

Query: 1416 AFLPKLQIAVKN-----------CVM-----------DDMGKEK--TFCLTASFIETSST 1309
              LP L+I+ K+           C               +G EK    C+T + +E  S 
Sbjct: 1191 VILPSLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGEDCITVAVVE-DSK 1249

Query: 1308 NRIKLDTVRDVLMPDLLQSVIKGRMEFKKVDILWNDQTDEPKATNNRSPS-GELCLKVFL 1132
            N ++LD+VR  L+P LLQ+ IKG +E KKVDILW D    PK T + + S GEL L+V +
Sbjct: 1250 NSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDL---PKVTKSYNGSAGELYLRVTM 1306

Query: 1131 STNCRATRLWNLLMDCCLPIMELIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVND 952
            S+       W  L++ C  IM LIDWTRSHPD++H   + +GID  W+ +  NL SA +D
Sbjct: 1307 SSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSD 1366

Query: 951  VGKTILPQHLMLVADCLSVTGEFVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSA 772
             GK+ILP+HL LVA+ LS +GEFVGL+AKGMARQ+   SVSSPF+QACFS+PG SF+K+A
Sbjct: 1367 TGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAA 1426

Query: 771  KAGAVDPLQGSLDSLAWGKVPPLGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRN 592
            K+G VD LQG+LD+LAWG   P+GTG +F+I+Y+ K  E+ K  D+Y LL    SF+  +
Sbjct: 1427 KSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLL--ETSFNQMD 1484

Query: 591  TKLKVPDGFEVVKDKSGAMRLKELPSRERFRNLGIS-------KALLEAQITLNDIKKLS 433
             ++ +P   +    K          S  R +N G +       K++L   +T NDI++L+
Sbjct: 1485 QEINIPQSRKYSSGKCS--------SDFRSKNGGYTPKEPKQWKSVLRNFMTANDIQRLT 1536

Query: 432  QTLRGMLNKYSIDEELDEVDKKMLKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFL 253
               R +LNKY IDE L E DK  +   LHFHPR  EK GSG   IKVG HP + D+RCF 
Sbjct: 1537 FDARVILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFF 1596

Query: 252  LQRKDGSVEDFSYHKCVHGALEMFAPQKAKNYKSRWLKN 136
            + RKDGSVEDFSY KC+ GAL++  P+K+K  ++RW  N
Sbjct: 1597 IIRKDGSVEDFSYRKCILGALDIIDPKKSKIQRNRWSGN 1635


>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
          Length = 1410

 Score =  667 bits (1720), Expect = 0.0
 Identities = 363/727 (49%), Positives = 486/727 (66%), Gaps = 12/727 (1%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ +M LGLQHS+VPLSF  PH LSC AWN  K       + DA   +KSYIP
Sbjct: 691  KGNLLKLVQHSMCLGLQHSLVPLSFGFPHLLSCAAWNEHKVSCLIQEDADAPKSAKSYIP 750

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
            YAVV NSFL GLNPLE FVHSVTSR+SSF +NA++PGTL+RRLM+FMRD++ AYDGT+R+
Sbjct: 751  YAVVGNSFLTGLNPLESFVHSVTSRESSFSDNAELPGTLHRRLMYFMRDLYIAYDGTIRN 810

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
            +YG+ + QF Y   GT             +  + + GQPVG             ALDQPI
Sbjct: 811  SYGSHVVQFYY---GTD------------EGTSEIAGQPVGSLSACAISEAAYSALDQPI 855

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE+SPL NLK  LE G K+    +T  LYLS++L R RHG+EYAALE+KN+LE L+F 
Sbjct: 856  SLLETSPLLNLKNALECGSKKRQGGQTMLLYLSRRLGRQRHGYEYAALEVKNYLEALMFS 915

Query: 1575 DIVSTVMIVHSSEPSSQ----ALSPWVCHFYICKDTVKRRRLKLHSIIDALH------KK 1426
            DIVSTVMI  +S+  SQ    + SPW        + ++RRRL + S+I++L+      +K
Sbjct: 916  DIVSTVMITFTSQAGSQKSQKSFSPW--------EILRRRRLTVQSVINSLYERHSTSRK 967

Query: 1425 CLSAFLPKLQIAVKNCVMDDMGKEK--TFCLTASFIETSSTNRIKLDTVRDVLMPDLLQS 1252
                 LP L+I  K+C +    +E   T C+T S IE S  + I+L TV+D+L+P LL++
Sbjct: 968  GSKVKLPNLRIRSKDCSVPATREEDNDTCCITVS-IECSKNSVIQLITVQDLLIPFLLET 1026

Query: 1251 VIKGRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLMDCCLPI 1072
            ++KG  E +KVDILW+D+++  KAT  R  SGEL LKV +S +      W+ LM+ CL I
Sbjct: 1027 IVKGFREIEKVDILWSDRSNTSKAT--RDSSGELYLKVSMSGDSGVKSYWSTLMNDCLRI 1084

Query: 1071 MELIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVADCLSVT 892
            M+LIDW+RSHP+++++  + YGID  W+ FL NL+SAV+DVGKTILP+HL+LVA+ LSVT
Sbjct: 1085 MDLIDWSRSHPENVNEFCSVYGIDSGWKFFLNNLESAVSDVGKTILPEHLLLVANTLSVT 1144

Query: 891  GEFVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDSLAWGKV 712
            G FVGL+ KG+ARQ+   SV++PF QACFS+P   FIK+AKA   D L G+LD+LAWG +
Sbjct: 1145 GNFVGLTPKGLARQREHASVATPFSQACFSNPAACFIKAAKAEVTDGLHGTLDALAWGNI 1204

Query: 711  PPLGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKDKSGAMR 532
            PPLGTG +FE+V++ K HEV+KP ++Y +L    S  ++    + PD       K GA+ 
Sbjct: 1205 PPLGTGGQFELVFSGKGHEVDKPINVYDMLATGISPDVQGVN-ETPDAKNHRSVKFGALL 1263

Query: 531  LKELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDKKMLKTA 352
            L +    +  + LGISK  ++    L+DI  LS  L  +LNKY I++ LD  DK  L  A
Sbjct: 1264 LYDKSVSQGLKKLGISKDRIKKLFKLDDIWILSNALAKILNKYPINQSLDHKDKSTLMIA 1323

Query: 351  LHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGALEMFAPQ 172
            L+FHPR  EKIG+G   IKV +HP ++ +RCF+L R DG+VEDFSY KCV GALE+  PQ
Sbjct: 1324 LYFHPRIDEKIGTGFQDIKVAYHPKHQSSRCFVLVRADGTVEDFSYRKCVLGALEIIDPQ 1383

Query: 171  KAKNYKS 151
             A+ YKS
Sbjct: 1384 AAEIYKS 1390


>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
            [Cicer arietinum]
          Length = 1474

 Score =  661 bits (1706), Expect = 0.0
 Identities = 357/735 (48%), Positives = 484/735 (65%), Gaps = 18/735 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ +M LGLQHS+V L +K+P KLSC AWN+ K         D ++  +SYIP
Sbjct: 741  KGNLLKLVQHSMCLGLQHSLVRLPYKIPRKLSCAAWNSQKGMQIF---SDTVEPVQSYIP 797

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
            YAVVE+SFL GLNPLECFVHSVT+RDSSF +NAD+PGTL RRLMFFMRDM+ AYDGTVR+
Sbjct: 798  YAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRN 857

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
             YGNQL QFSYD +  S S D+  + EDT     +GG+PVG             AL QPI
Sbjct: 858  LYGNQLIQFSYDAEEDS-SCDS-HFREDT-----IGGEPVGTLSACAVSEAAYSALSQPI 910

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE+SPL NLK VLE G ++    +T +L+LS+K+ + R+GFEYAALE+KN+LE L+F 
Sbjct: 911  SLLEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFS 970

Query: 1575 DIVSTVMIVHSSEPSS-QALSPWVCHFYICKDTVKRRRLKLHSIIDALH------KKCLS 1417
            DIVSTVMI+ + +  S +  SPWVCHF++ K+ V RR L++HSIID+L+      +K   
Sbjct: 971  DIVSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRYDSLRKGSK 1030

Query: 1416 AFLPKLQIAVKNCVMDDMGKEK-----------TFCLTASFIETSSTNRIKLDTVRDVLM 1270
              LP L+I+ K C +  M KE              C+T + +E +  N ++LD VR++++
Sbjct: 1031 VTLPNLKISTKKCSVHYMAKEGGETSVDKEIDGEDCITVTIVE-NYMNSVQLDVVRNMMI 1089

Query: 1269 PDLLQSVIKGRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLLM 1090
            P LL++ IKG  E KKVDILW D +   K+ N  S  GEL L+V +S++      W  L+
Sbjct: 1090 PFLLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSS--GELYLRVTMSSDSDRGTFWGALI 1147

Query: 1089 DCCLPIMELIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLVA 910
            + C  IM +IDW RSHPD++H   + +GID  W+ FL NL SA +D G +ILP+HL LVA
Sbjct: 1148 NHCHRIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLVA 1207

Query: 909  DCLSVTGEFVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLDS 730
            + LS +GEFVGL++KGMARQ+   SVSSPF+QACFS+PG +F+K+AK+G VD LQG+LD 
Sbjct: 1208 NSLSASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQGTLDG 1267

Query: 729  LAWGKVPPLGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVKD 550
            LAWG    +GT  +F+++Y+ K  E+ K  D+Y LL    SF   + ++          D
Sbjct: 1268 LAWGNCLSMGTSGQFDVMYSEKVQELAKSVDVYDLL--ETSFDQLDQEINTSQSNNYSSD 1325

Query: 549  KSGAMRLKELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVDK 370
            K  + + +    R   +     K+++   +T NDI+KL+   R +LNKY ID+ L E DK
Sbjct: 1326 KCNS-QFRHKKGRYAPKEPKQWKSVIRNFMTANDIQKLTSASRFILNKYPIDQILSERDK 1384

Query: 369  KMLKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGAL 190
              +   LHFHPR  EK+GSG   IKVG HP + D+RCF + R DG+VEDFSY KC+ GAL
Sbjct: 1385 LTIMKVLHFHPRRNEKLGSGPQHIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCILGAL 1444

Query: 189  EMFAPQKAKNYKSRW 145
            ++  P+K+K  K +W
Sbjct: 1445 DVVDPEKSKIQKKKW 1459


>gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1463

 Score =  660 bits (1703), Expect = 0.0
 Identities = 361/744 (48%), Positives = 490/744 (65%), Gaps = 21/744 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            +SSL ++ Q +M LG+Q+S+V LS++LP  LSC AWN+ K   S       L+  +SYIP
Sbjct: 728  KSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKGLDSIQIYSGTLESVQSYIP 787

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV++SFL GLNPLECFVHSVT R S F ENADVPGTL RRLMFFMRD+ +AYDGTVR+
Sbjct: 788  CAVVKSSFLTGLNPLECFVHSVTIRASGFSENADVPGTLTRRLMFFMRDLFAAYDGTVRN 847

Query: 1935 AYGNQLFQFSYDI-KGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQP 1759
             YGNQL QFSYDI + TS       Y        A+GG+PVG             ALDQP
Sbjct: 848  LYGNQLIQFSYDIDENTSCDKSFKEY--------AIGGEPVGALSASAVSEAGYSALDQP 899

Query: 1758 ISVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLF 1579
            +S+LE+SPL NLK VLE G ++ N  ++ +L+ S+K+ + RHGFEYAALE+KN+LE LLF
Sbjct: 900  VSLLEASPLLNLKNVLECGSRKKNGDQSVSLFFSEKVGKQRHGFEYAALEVKNYLERLLF 959

Query: 1578 KDIVSTVMIVHSSEPSS--QALSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAF-- 1411
              IVSTVMI+ +   SS  +  SPWVCHF++ K+ + RR+LK+HSIID L+++  S    
Sbjct: 960  SKIVSTVMIIFTPPDSSSLEKYSPWVCHFHLDKEILMRRKLKVHSIIDYLYQRYYSQSTE 1019

Query: 1410 ----LPKLQIAVKNCVMDDMGKE----------KTFCLTASFIETSSTNRIKLDTVRDVL 1273
                  KL+I+ K C +D   KE             C+T + +E S  N I+L++VRD++
Sbjct: 1020 PKVGFTKLKISSKKCSVDSTAKEGEDICIDKEDSDDCITVTIVENSE-NPIQLNSVRDLM 1078

Query: 1272 MPDLLQSVIKGRMEFKKVDILWNDQTDEPKATNN-RSPSGELCLKVFLSTNCRATRLWNL 1096
            +P  L + IKG M+ KKVDILWN+Q+   K TN+    SGEL L+V ++++    R W +
Sbjct: 1079 IPFFLGTTIKGFMDIKKVDILWNNQS---KGTNSYNGSSGELYLRVTVASSGNTGRFWGV 1135

Query: 1095 LMDCCLPIMELIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLML 916
            L++ C  IM++IDW RSHPD+++ + + YGIDV+W+ +  +L SA++D GK+ILP+HL L
Sbjct: 1136 LVNHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISDTGKSILPKHLRL 1195

Query: 915  VADCLSVTGEFVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSL 736
            +A+ +S +GEFVGL+AKGMA+Q+   SVSSPF+QACFS+PG SFIK+AK+   D LQGSL
Sbjct: 1196 LANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSELTDNLQGSL 1255

Query: 735  DSLAWGKVPPLGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVV 556
            D+LAWG  P +GT   F+I+Y+ K HEV+K  D+Y LL    SF   N K+    GF   
Sbjct: 1256 DALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVYKLL--EASFDKPNNKI----GFHAH 1309

Query: 555  KDKSGAMRLK-ELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDE 379
             + SG    +    +   F+     K +L   +T+NDI+KL+   R +LNKY IDE L E
Sbjct: 1310 NNSSGKCGSEFRHKNGYAFKEGKQWKNILRNFVTVNDIQKLTTASRCILNKYEIDELLSE 1369

Query: 378  VDKKMLKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVH 199
             D+  +   L+FHPR  EK+G G   IKVG HP +KD+RCF + R DG+VEDFSY KC+ 
Sbjct: 1370 FDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPKFKDSRCFHIVRTDGTVEDFSYRKCIL 1429

Query: 198  GALEMFAPQKAKNYKSRWLKNNTA 127
             ALE+  P+ +K  K +W   + A
Sbjct: 1430 RALEVVDPKMSKIQKKKWSARDDA 1453


>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Cicer arietinum] gi|502160026|ref|XP_004511608.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X2 [Cicer arietinum]
            gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
            RNA polymerase D subunit 1-like isoform X3 [Cicer
            arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
            DNA-directed RNA polymerase D subunit 1-like isoform X4
            [Cicer arietinum]
          Length = 1475

 Score =  655 bits (1691), Expect = 0.0
 Identities = 356/736 (48%), Positives = 484/736 (65%), Gaps = 19/736 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            + +L K+VQ +M LGLQHS+V L +K+P KLSC AWN+ K         D ++  +SYIP
Sbjct: 741  KGNLLKLVQHSMCLGLQHSLVRLPYKIPRKLSCAAWNSQKGMQIF---SDTVEPVQSYIP 797

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
            YAVVE+SFL GLNPLECFVHSVT+RDSSF +NAD+PGTL RRLMFFMRDM+ AYDGTVR+
Sbjct: 798  YAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRN 857

Query: 1935 AYGNQLFQFSYDIKGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQPI 1756
             YGNQL QFSYD +  S S D+  + EDT     +GG+PVG             AL QPI
Sbjct: 858  LYGNQLIQFSYDAEEDS-SCDS-HFREDT-----IGGEPVGTLSACAVSEAAYSALSQPI 910

Query: 1755 SVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLFK 1576
            S+LE+SPL NLK VLE G ++    +T +L+LS+K+ + R+GFEYAALE+KN+LE L+F 
Sbjct: 911  SLLEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFS 970

Query: 1575 DIVSTVMIVHSSEPSS-QALSPWVCHFYICKDTVKRRRLKLHSIIDALH------KKCLS 1417
            DIVSTVMI+ + +  S +  SPWVCHF++ K+ V RR L++HSIID+L+      +K   
Sbjct: 971  DIVSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRYDSLRKGSK 1030

Query: 1416 AFLPKLQIAV-KNCVMDDMGKEK-----------TFCLTASFIETSSTNRIKLDTVRDVL 1273
              LP L+I+  + C +  M KE              C+T + +E +  N ++LD VR+++
Sbjct: 1031 VTLPNLKISTNRKCSVHYMAKEGGETSVDKEIDGEDCITVTIVE-NYMNSVQLDVVRNMM 1089

Query: 1272 MPDLLQSVIKGRMEFKKVDILWNDQTDEPKATNNRSPSGELCLKVFLSTNCRATRLWNLL 1093
            +P LL++ IKG  E KKVDILW D +   K+ N  S  GEL L+V +S++      W  L
Sbjct: 1090 IPFLLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSS--GELYLRVTMSSDSDRGTFWGAL 1147

Query: 1092 MDCCLPIMELIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLMLV 913
            ++ C  IM +IDW RSHPD++H   + +GID  W+ FL NL SA +D G +ILP+HL LV
Sbjct: 1148 INHCHRIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKHLRLV 1207

Query: 912  ADCLSVTGEFVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGSLD 733
            A+ LS +GEFVGL++KGMARQ+   SVSSPF+QACFS+PG +F+K+AK+G VD LQG+LD
Sbjct: 1208 ANSLSASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQGTLD 1267

Query: 732  SLAWGKVPPLGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEVVK 553
             LAWG    +GT  +F+++Y+ K  E+ K  D+Y LL    SF   + ++          
Sbjct: 1268 GLAWGNCLSMGTSGQFDVMYSEKVQELAKSVDVYDLL--ETSFDQLDQEINTSQSNNYSS 1325

Query: 552  DKSGAMRLKELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELDEVD 373
            DK  + + +    R   +     K+++   +T NDI+KL+   R +LNKY ID+ L E D
Sbjct: 1326 DKCNS-QFRHKKGRYAPKEPKQWKSVIRNFMTANDIQKLTSASRFILNKYPIDQILSERD 1384

Query: 372  KKMLKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCVHGA 193
            K  +   LHFHPR  EK+GSG   IKVG HP + D+RCF + R DG+VEDFSY KC+ GA
Sbjct: 1385 KLTIMKVLHFHPRRNEKLGSGPQHIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCILGA 1444

Query: 192  LEMFAPQKAKNYKSRW 145
            L++  P+K+K  K +W
Sbjct: 1445 LDVVDPEKSKIQKKKW 1460


>gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1464

 Score =  654 bits (1688), Expect = 0.0
 Identities = 360/745 (48%), Positives = 490/745 (65%), Gaps = 22/745 (2%)
 Frame = -3

Query: 2295 RSSLAKIVQQAMSLGLQHSMVPLSFKLPHKLSCEAWNNSKAHGSSFRNQDALDCSKSYIP 2116
            +SSL ++ Q +M LG+Q+S+V LS++LP  LSC AWN+ K   S       L+  +SYIP
Sbjct: 728  KSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKGLDSIQIYSGTLESVQSYIP 787

Query: 2115 YAVVENSFLAGLNPLECFVHSVTSRDSSFRENADVPGTLNRRLMFFMRDMHSAYDGTVRS 1936
             AVV++SFL GLNPLECFVHSVT R S F ENADVPGTL RRLMFFMRD+ +AYDGTVR+
Sbjct: 788  CAVVKSSFLTGLNPLECFVHSVTIRASGFSENADVPGTLTRRLMFFMRDLFAAYDGTVRN 847

Query: 1935 AYGNQLFQFSYDI-KGTSLSYDTGSYTEDTDACNAVGGQPVGXXXXXXXXXXXXXALDQP 1759
             YGNQL QFSYDI + TS       Y        A+GG+PVG             ALDQP
Sbjct: 848  LYGNQLIQFSYDIDENTSCDKSFKEY--------AIGGEPVGALSASAVSEAGYSALDQP 899

Query: 1758 ISVLESSPLFNLKKVLESGLKRSNTSKTATLYLSKKLRRLRHGFEYAALEIKNHLEGLLF 1579
            +S+LE+SPL NLK VLE G ++ N  ++ +L+ S+K+ + RHGFEYAALE+KN+LE LLF
Sbjct: 900  VSLLEASPLLNLKNVLECGSRKKNGDQSVSLFFSEKVGKQRHGFEYAALEVKNYLERLLF 959

Query: 1578 KDIVSTVMIVHSSEPSS--QALSPWVCHFYICKDTVKRRRLKLHSIIDALHKKCLSAF-- 1411
              IVSTVMI+ +   SS  +  SPWVCHF++ K+ + RR+LK+HSIID L+++  S    
Sbjct: 960  SKIVSTVMIIFTPPDSSSLEKYSPWVCHFHLDKEILMRRKLKVHSIIDYLYQRYYSQSTE 1019

Query: 1410 ----LPKLQIAV-KNCVMDDMGKE----------KTFCLTASFIETSSTNRIKLDTVRDV 1276
                  KL+I+  + C +D   KE             C+T + +E S  N I+L++VRD+
Sbjct: 1020 PKVGFTKLKISSNRKCSVDSTAKEGEDICIDKEDSDDCITVTIVENSE-NPIQLNSVRDL 1078

Query: 1275 LMPDLLQSVIKGRMEFKKVDILWNDQTDEPKATNN-RSPSGELCLKVFLSTNCRATRLWN 1099
            ++P  L + IKG M+ KKVDILWN+Q+   K TN+    SGEL L+V ++++    R W 
Sbjct: 1079 MIPFFLGTTIKGFMDIKKVDILWNNQS---KGTNSYNGSSGELYLRVTVASSGNTGRFWG 1135

Query: 1098 LLMDCCLPIMELIDWTRSHPDDMHDMFTQYGIDVSWRCFLGNLKSAVNDVGKTILPQHLM 919
            +L++ C  IM++IDW RSHPD+++ + + YGIDV+W+ +  +L SA++D GK+ILP+HL 
Sbjct: 1136 VLVNHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISDTGKSILPKHLR 1195

Query: 918  LVADCLSVTGEFVGLSAKGMARQKTKMSVSSPFMQACFSSPGVSFIKSAKAGAVDPLQGS 739
            L+A+ +S +GEFVGL+AKGMA+Q+   SVSSPF+QACFS+PG SFIK+AK+   D LQGS
Sbjct: 1196 LLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSELTDNLQGS 1255

Query: 738  LDSLAWGKVPPLGTGAKFEIVYNSKEHEVEKPTDIYSLLTCNKSFHMRNTKLKVPDGFEV 559
            LD+LAWG  P +GT   F+I+Y+ K HEV+K  D+Y LL    SF   N K+    GF  
Sbjct: 1256 LDALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVYKLL--EASFDKPNNKI----GFHA 1309

Query: 558  VKDKSGAMRLK-ELPSRERFRNLGISKALLEAQITLNDIKKLSQTLRGMLNKYSIDEELD 382
              + SG    +    +   F+     K +L   +T+NDI+KL+   R +LNKY IDE L 
Sbjct: 1310 HNNSSGKCGSEFRHKNGYAFKEGKQWKNILRNFVTVNDIQKLTTASRCILNKYEIDELLS 1369

Query: 381  EVDKKMLKTALHFHPRSKEKIGSGVVTIKVGHHPVYKDARCFLLQRKDGSVEDFSYHKCV 202
            E D+  +   L+FHPR  EK+G G   IKVG HP +KD+RCF + R DG+VEDFSY KC+
Sbjct: 1370 EFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPKFKDSRCFHIVRTDGTVEDFSYRKCI 1429

Query: 201  HGALEMFAPQKAKNYKSRWLKNNTA 127
              ALE+  P+ +K  K +W   + A
Sbjct: 1430 LRALEVVDPKMSKIQKKKWSARDDA 1454