BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00008427
         (203 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                  72   1e-10
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...    59   9e-07

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 36/67 (53%), Positives = 43/67 (64%)
 Frame = +1

Query: 1   FTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTE 180
           FT+P PVNPDDA+T  +FREF      S   T+ + LE S E+  +HTSLKV    LS E
Sbjct: 422 FTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPE 481

Query: 181 QLRALHE 201
           QL ALHE
Sbjct: 482 QLSALHE 488


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
           gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
           replication protein; AltName: Full=156 kDa protein;
           AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
           [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 30/66 (45%), Positives = 41/66 (62%)
 Frame = +1

Query: 1   FTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTE 180
           FT+P PVNP+DAD    F++FS  + ++   T+   LE SAE+   HT LKV  + LS  
Sbjct: 420 FTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEG 479

Query: 181 QLRALH 198
           QL A+H
Sbjct: 480 QLEAIH 485