BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00008426
         (246 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                  94   2e-17
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...    77   2e-12
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...    74   2e-11
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...    66   5e-09
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...    65   1e-08
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...    65   1e-08
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...    65   1e-08
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...    65   1e-08
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...    65   1e-08
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...    65   1e-08

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 47/81 (58%), Positives = 55/81 (67%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGS 65
           EFPVR VNTRLRGPPGF +PFT+P PVNPDDA+T  +FREF          T+ + LE S
Sbjct: 402 EFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENS 461

Query: 64  AENLASHTSLKVGHADLSTEQ 2
            E+  +HTSLKV    LS EQ
Sbjct: 462 TESDVTHTSLKVVPQSLSPEQ 482


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
           gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
           replication protein; AltName: Full=156 kDa protein;
           AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
           [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 41/81 (50%), Positives = 49/81 (60%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGS 65
           EFPVR V T +RGPPGF NPFT+P PVNP+DAD    F++F          T+   LE S
Sbjct: 400 EFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEAS 459

Query: 64  AENLASHTSLKVGHADLSTEQ 2
           AE+   HT LKV  + LS  Q
Sbjct: 460 AESPDHHTQLKVLCSALSEGQ 480


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 669

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 39/81 (48%), Positives = 48/81 (59%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGS 65
           EFPVR VNT LRGPPGF +PFT+P PVNPDDA+T  +F+ F           +  +LE  
Sbjct: 402 EFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAF-----CQAAAAVETTLEQQ 456

Query: 64  AENLASHTSLKVGHADLSTEQ 2
           AE    H SL++    LS  Q
Sbjct: 457 AETPDEHQSLRLDCPTLSEHQ 477


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 65.9 bits (159), Expect = 5e-09
 Identities = 34/72 (47%), Positives = 42/72 (58%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGS 65
           EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F              +LE  
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQ 456

Query: 64  AENLASHTSLKV 29
           AE    H SL +
Sbjct: 457 AETPDEHQSLSL 468


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREF 122
           EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREF 122
           EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREF 122
           EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREF 122
           EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREF 122
           EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = -3

Query: 244 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREF 122
           EFPVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F
Sbjct: 402 EFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF 442