BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00008384
         (1407 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   468   e-129
ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   468   e-129
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...   462   e-127
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik...   462   e-127
ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   462   e-127
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   456   e-126
ref|XP_002331405.1| predicted protein [Populus trichocarpa]           455   e-125
emb|CBI33811.3| unnamed protein product [Vitis vinifera]              454   e-125
ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622...   449   e-123
ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citr...   449   e-123
gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]        448   e-123
gb|ESW32209.1| hypothetical protein PHAVU_002G302500g [Phaseolus...   446   e-122
gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]     443   e-122
ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-lik...   440   e-121
gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]     438   e-120
ref|XP_003532450.2| PREDICTED: tRNA pseudouridine synthase A, mi...   437   e-120
gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus pe...   437   e-120
ref|XP_004299762.1| PREDICTED: tRNA pseudouridine synthase A-lik...   435   e-119
ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-lik...   431   e-118
ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago trun...   430   e-118

>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 443

 Score =  468 bits (1204), Expect = e-129
 Identities = 238/425 (56%), Positives = 287/425 (67%), Gaps = 6/425 (1%)
 Frame = +1

Query: 49   EEKQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLF 228
            + + + + KIY+HY HTD+C   RW ARE F +MYARPW  V+ FYS +VNGR S   LF
Sbjct: 24   QTETKTQNKIYFHYNHTDSCKSFRWTARESFQFMYARPWQEVSDFYSNVVNGRLSFLELF 83

Query: 229  GPVERQGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLD 408
                    D       S++ +L     +D+ G+WAR+ FKI +SY G SFDGWQKQPGL+
Sbjct: 84   RSQMHFVRDDAKIQEDSNKTELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLN 143

Query: 409  TVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIE 588
            TVQGLVE S+G+F+DEKKA+QLKE   P+EG A VAGRTDKGV+AL QVCSFYTWRKD+ 
Sbjct: 144  TVQGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVR 203

Query: 589  AREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEED 768
              E+EDAIN++APG+IR +SV  VSRVFHPNF AKWRRYLYIFP+++GE+  +    E+ 
Sbjct: 204  PHEIEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDSEDL 263

Query: 769  EQTQFVS------NSEGDWLSKEHKHFLEENTGEFANPKDELESKDKPTTFSTTRVSQLL 930
            E  +         N   +  S+EH   L        + KDELE   KP  FS  RV+QLL
Sbjct: 264  ENLRSYEKYDEQRNGCAELTSEEHVEEL------ITSDKDELEGAKKPRIFSICRVNQLL 317

Query: 931  QQLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVAN 1110
            QQLEGKLLSYK+FARDTKASRNVGPPTECFIYHARA EARLPC DH    K+MC+ELVAN
Sbjct: 318  QQLEGKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLPCPDHGEGRKVMCVELVAN 377

Query: 1111 RFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDP 1290
            RFLRKMVRVLV             D L++L D             DGLCL DVGY +FD 
Sbjct: 378  RFLRKMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFDA 437

Query: 1291 QICLI 1305
            QIC++
Sbjct: 438  QICIV 442


>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  468 bits (1203), Expect = e-129
 Identities = 241/435 (55%), Positives = 300/435 (68%), Gaps = 2/435 (0%)
 Frame = +1

Query: 7    VSPLRAPTPTNLFMEEKQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFY 186
            +SP       +L   EK   E K+Y HY HT    FSRW ARE   +MY RPW +V  FY
Sbjct: 2    LSPGAVEIGRDLMENEK---ENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFY 58

Query: 187  SELVNGRSSLSPLFGPVERQGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYL 366
            S +V GR SL  L G      HD G+   +SD+ +  +   KD+ G+WARLTFKI++SY 
Sbjct: 59   SNVVTGRCSLLGLLGIETHPIHD-GEIVEASDKTEFGNVLTKDRGGRWARLTFKIVLSYH 117

Query: 367  GKSFDGWQKQPGLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTAL 546
            G SFDGWQKQPGL+TVQGLVE+S+GRF+DE+KA+QLKE+ LPVEG+ +VAGRTDKGVTAL
Sbjct: 118  GASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTAL 177

Query: 547  NQVCSFYTWRKDIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLH 726
             QVCSFYTW+KD++ +++EDAIN AAPG++R +SV  VSR+FHPNF AKWR Y YIFPL+
Sbjct: 178  QQVCSFYTWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLN 237

Query: 727  EGEEGTERKKVEEDEQTQFVSNSEGDWLSK-EHKHFLEENTGEFANPKD-ELESKDKPTT 900
            +G++G +  + E D Q    +   G+  S+   ++   ENT       D E ES+ KP+T
Sbjct: 238  DGDDGEQISENEMDIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPST 297

Query: 901  FSTTRVSQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGST 1080
            FS +RV QLL+QLEGKLLSYK+FARDTKASRN+GPPTECF++HARA EARL   D    T
Sbjct: 298  FSISRVDQLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFSDDGEGT 357

Query: 1081 KIMCIELVANRFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCL 1260
            K+MCIELVANRFLRKMVRVLV             D L++L D             DGLCL
Sbjct: 358  KVMCIELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCL 417

Query: 1261 VDVGYQDFDPQICLI 1305
            +DVG+ +FDPQIC I
Sbjct: 418  IDVGFTEFDPQICFI 432


>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  462 bits (1190), Expect = e-127
 Identities = 242/438 (55%), Positives = 294/438 (67%), Gaps = 5/438 (1%)
 Frame = +1

Query: 7    VSPLRAPTPTNLFMEEKQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFY 186
            VSP  A     + ME   R + K Y HY HTD C  +RW ARE + +MY RPW  V  FY
Sbjct: 10   VSPSSAGFGLKILMEN--RAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFY 67

Query: 187  SELVNGRSSLSPLFGPVERQGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYL 366
            S  VNGR SLS L G    + HD  +     +  +L     KD+ G+WAR TFKI++SY 
Sbjct: 68   SHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYD 127

Query: 367  GKSFDGWQKQPGLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTAL 546
            G SFDGWQKQPGL+TVQGLVE S+G+F+DEKKA+ LK++ LP+EG A VAGRTDKGVTAL
Sbjct: 128  GNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTAL 187

Query: 547  NQVCSFYTWRKDIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLH 726
             QVCSFYTWR D++ +++ED+IN+AAPG++R  SV +VSR+FHPNF AKWRRYLYI PL+
Sbjct: 188  RQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLN 247

Query: 727  EGE----EGTERKKVEEDEQTQFVSNSEGDWLSKEHKHFLEENTGEFANPKD-ELESKDK 891
            +GE    + T  + VE  E+  FV     +   ++    + +N     +P D EL S DK
Sbjct: 248  DGENMEPDSTTWENVENREEENFVKIEASN--GEKCVDGIHDNL--VLSPNDEELVSADK 303

Query: 892  PTTFSTTRVSQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHT 1071
            P TFS TRV+QLL++LEGKLLSYKMFARDTKASRN GPPTECF+YHARAAE RLPCL+  
Sbjct: 304  PQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQG 363

Query: 1072 GSTKIMCIELVANRFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDG 1251
                +MC+ELVANRFLRKMVRVLV             D L++L D             DG
Sbjct: 364  VGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDG 423

Query: 1252 LCLVDVGYQDFDPQICLI 1305
            L LVDVGY DFD QIC I
Sbjct: 424  LSLVDVGYTDFDSQICFI 441


>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  462 bits (1190), Expect = e-127
 Identities = 242/438 (55%), Positives = 294/438 (67%), Gaps = 5/438 (1%)
 Frame = +1

Query: 7    VSPLRAPTPTNLFMEEKQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFY 186
            VSP  A     + ME   R + K Y HY HTD C  +RW ARE + +MY RPW  V  FY
Sbjct: 10   VSPSSAGFGLKILMEN--RAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFY 67

Query: 187  SELVNGRSSLSPLFGPVERQGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYL 366
            S  VNGR SLS L G    + HD  +     +  +L     KD+ G+WAR TFKI++SY 
Sbjct: 68   SHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYD 127

Query: 367  GKSFDGWQKQPGLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTAL 546
            G SFDGWQKQPGL+TVQGLVE S+G+F+DEKKA+ LK++ LP+EG A VAGRTDKGVTAL
Sbjct: 128  GNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTAL 187

Query: 547  NQVCSFYTWRKDIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLH 726
             QVCSFYTWR D++ +++ED+IN+AAPG++R  SV +VSR+FHPNF AKWRRYLYI PL+
Sbjct: 188  RQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLN 247

Query: 727  EGE----EGTERKKVEEDEQTQFVSNSEGDWLSKEHKHFLEENTGEFANPKD-ELESKDK 891
            +GE    + T  + VE  E+  FV     +   ++    + +N     +P D EL S DK
Sbjct: 248  DGENMEPDSTTWENVENREEENFVKIEASN--GEKCVDGIHDNL--VLSPNDQELVSADK 303

Query: 892  PTTFSTTRVSQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHT 1071
            P TFS TRV+QLL++LEGKLLSYKMFARDTKASRN GPPTECF+YHARAAE RLPCL+  
Sbjct: 304  PQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQG 363

Query: 1072 GSTKIMCIELVANRFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDG 1251
                +MC+ELVANRFLRKMVRVLV             D L++L D             DG
Sbjct: 364  VGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDG 423

Query: 1252 LCLVDVGYQDFDPQICLI 1305
            L LVDVGY DFD QIC I
Sbjct: 424  LSLVDVGYTDFDSQICFI 441


>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
            gi|550318755|gb|ERP50021.1| hypothetical protein
            POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  462 bits (1188), Expect = e-127
 Identities = 242/442 (54%), Positives = 295/442 (66%), Gaps = 7/442 (1%)
 Frame = +1

Query: 1    LRVSPLRAPTPTNLFMEEKQRVE---EKIYYHYQHTDTCNFSRWNARECFDYMYARPWDR 171
            L+  P+     T  F +    +E   +K+Y  Y HTD+C FSRW ARE F +M+ARPW  
Sbjct: 9    LKSLPITTKQQTRRFTKNSVVMEAQNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQE 68

Query: 172  VNHFYSELVNGRSSLSPLFGPVERQGHDAGDFAGSSDEYKLTSEQYK-DQQGKWARLTFK 348
            V  FYS+ VNG+ SL  LFG      H        S+E  L       D+ G+WAR+TFK
Sbjct: 69   VVDFYSKSVNGQLSLLELFGTQAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFK 128

Query: 349  IIISYLGKSFDGWQKQPGLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTD 528
            I++SY G SFDGWQKQPGL+TVQGLVE S+GRF+DEKKA+QLKE+  P+EG ASVAGRTD
Sbjct: 129  IVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTD 188

Query: 529  KGVTALNQVCSFYTWRKDIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYL 708
            KGV+AL QVCSFYTWRKD++  E+EDAIN  APG++R  S+  VSR FHPNF AKWRRYL
Sbjct: 189  KGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYL 248

Query: 709  YIFPLHEGEEGTERKKVEEDEQTQFVSNSEGDWLSKEHKHFL--EENT-GEFANPKDELE 879
            YIFPL++GE    R+++E +   +  S+ E     +     L  EEN      + +DEL+
Sbjct: 249  YIFPLNDGE---NREEIEGEGGIENFSSHENCEKQRNECGELASEENVENSIISDEDELQ 305

Query: 880  SKDKPTTFSTTRVSQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPC 1059
               KP +FS  RV+QLLQQLEGKLLSYKMFARDTKASRNVGPPTECF+YHARA E RLP 
Sbjct: 306  GAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS 365

Query: 1060 LDHTGSTKIMCIELVANRFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXX 1239
             DH    ++MC+EL+ANRFLRKMVRVLV             D L++L D           
Sbjct: 366  PDHEKGIRVMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPA 425

Query: 1240 XXDGLCLVDVGYQDFDPQICLI 1305
              DGLCLVDVGY +FDP+ CLI
Sbjct: 426  PPDGLCLVDVGYTEFDPRNCLI 447


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
            gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
            family protein [Populus trichocarpa]
          Length = 457

 Score =  456 bits (1174), Expect = e-126
 Identities = 242/451 (53%), Positives = 298/451 (66%), Gaps = 16/451 (3%)
 Frame = +1

Query: 1    LRVSPLRAPTPTNLFMEEKQRVE---EKIYYHYQHTDTCNFSRWNARECFDYMYARPWDR 171
            L+  P+     T  F +    +E   +K+Y  Y HTD+C FSRW ARE F +M+ARPW  
Sbjct: 9    LKSLPITTKQQTRRFTKNSVVMEAQNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQE 68

Query: 172  VNHFYSELVNGRSSLSPLFGPVE------RQGHDAGDFAG----SSDEYKLTSEQYKDQQ 321
            V  FYS+ VNG+ SL  LFG         ++ HD          S++   L      D+ 
Sbjct: 69   VVDFYSKSVNGQLSLLELFGTQVFFTMELKKAHDVHCDDKIEEVSNETGLLEGVSNVDKS 128

Query: 322  GKWARLTFKIIISYLGKSFDGWQKQPGLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEG 501
            G+WAR+TFKI++SY G SFDGWQKQPGL+TVQGLVE S+GRF+DEKKA+QLKE+  P+EG
Sbjct: 129  GRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEG 188

Query: 502  LASVAGRTDKGVTALNQVCSFYTWRKDIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPN 681
             ASVAGRTDKGV+AL QVCSFYTWRKD++  E+EDAIN  APG++R  S+  VSR FHPN
Sbjct: 189  CASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPN 248

Query: 682  FCAKWRRYLYIFPLHEGEEGTERKKVEEDEQTQFVSNSEGDWLSKEHKHFL--EENT-GE 852
            F AKWRRYLYIFPL++GE    R+++E +   +  S+ E     +     L  EEN    
Sbjct: 249  FSAKWRRYLYIFPLNDGE---NREEIEGEGGIENFSSHENCEKQRNECGELASEENVENS 305

Query: 853  FANPKDELESKDKPTTFSTTRVSQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFIYHA 1032
              + +DEL+   KP +FS  RV+QLLQQLEGKLLSYKMFARDTKASRNVGPPTECF+YHA
Sbjct: 306  IISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHA 365

Query: 1033 RAAEARLPCLDHTGSTKIMCIELVANRFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXX 1212
            RA E RLP  DH    ++MC+EL+ANRFLRKMVRVLV             D L++L D  
Sbjct: 366  RATETRLPSPDHEKGIRVMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDAT 425

Query: 1213 XXXXXXXXXXXDGLCLVDVGYQDFDPQICLI 1305
                       DGLCLVDVGY +FDP+ CLI
Sbjct: 426  CRRATAPPAPPDGLCLVDVGYTEFDPRNCLI 456


>ref|XP_002331405.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  455 bits (1171), Expect = e-125
 Identities = 237/425 (55%), Positives = 289/425 (68%), Gaps = 13/425 (3%)
 Frame = +1

Query: 70   EKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFGPVE--- 240
            +K+Y  Y HTD+C FSRW ARE F +M+ARPW  V  FYS+ VNG+ SL  LFG      
Sbjct: 6    DKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFGTQVFFT 65

Query: 241  ---RQGHDAGDFAG----SSDEYKLTSEQYKDQQGKWARLTFKIIISYLGKSFDGWQKQP 399
               ++ HD          S++   L      D+ G+WAR+TFKI++SY G SFDGWQKQP
Sbjct: 66   MELKKAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQP 125

Query: 400  GLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRK 579
            GL+TVQGLVE S+GRF+DEKKA+QLKE+  P+EG ASVAGRTDKGV+AL QVCSFYTWRK
Sbjct: 126  GLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRK 185

Query: 580  DIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKV 759
            D++  E+EDAIN  APG++R  S+  VSR FHPNF AKWRRYLYIFPL++GE    R+++
Sbjct: 186  DVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGE---NREEI 242

Query: 760  EEDEQTQFVSNSEGDWLSKEHKHFL--EENT-GEFANPKDELESKDKPTTFSTTRVSQLL 930
            E +   +  S+ E     +     L  EEN      + +DEL+   KP +FS  RV+QLL
Sbjct: 243  EGEGGIENFSSHENCEKQRNECGELASEENVENSIISDEDELQGAKKPRSFSVCRVNQLL 302

Query: 931  QQLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVAN 1110
            QQLEGKLLSYKMFARDTKASRNVGPPTECF+YHARA E RLP  DH    ++MC+EL+AN
Sbjct: 303  QQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSPDHEKGIRVMCVELIAN 362

Query: 1111 RFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDP 1290
            RFLRKMVRVLV             D L++L D             DGLCLVDVGY +FDP
Sbjct: 363  RFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDP 422

Query: 1291 QICLI 1305
            + CLI
Sbjct: 423  RNCLI 427


>emb|CBI33811.3| unnamed protein product [Vitis vinifera]
          Length = 402

 Score =  454 bits (1169), Expect = e-125
 Identities = 233/433 (53%), Positives = 289/433 (66%)
 Frame = +1

Query: 7    VSPLRAPTPTNLFMEEKQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFY 186
            +SP       +L   EK   E K+Y HY HT    FSRW ARE   +MY RPW +V  FY
Sbjct: 2    LSPGAVEIGRDLMENEK---ENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFY 58

Query: 187  SELVNGRSSLSPLFGPVERQGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYL 366
            S +V GR SL  L G      HD G+   +SD+ +  +   KD+ G+WARLTFKI++SY 
Sbjct: 59   SNVVTGRCSLLGLLGIETHPIHD-GEIVEASDKTEFGNVLTKDRGGRWARLTFKIVLSYH 117

Query: 367  GKSFDGWQKQPGLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTAL 546
            G SFDGWQKQPGL+TVQGLVE+S+GRF+DE+KA+QLKE+ LPVEG+ +VAGRTDKGVTAL
Sbjct: 118  GASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTAL 177

Query: 547  NQVCSFYTWRKDIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLH 726
             QVCSFYTW+KD++ +++EDAIN AAPG++R +SV  VSR+FHPNF AKWR Y YIFPL+
Sbjct: 178  QQVCSFYTWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLN 237

Query: 727  EGEEGTERKKVEEDEQTQFVSNSEGDWLSKEHKHFLEENTGEFANPKDELESKDKPTTFS 906
            +G++G +  + E D Q    +                             E++ KP+TFS
Sbjct: 238  DGDDGEQISENEMDIQKISFN-----------------------------ENRKKPSTFS 268

Query: 907  TTRVSQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKI 1086
             +RV QLL+QLEGKLLSYK+FARDTKASRN+GPPTECF++HARA EARL   D    TK+
Sbjct: 269  ISRVDQLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFSDDGEGTKV 328

Query: 1087 MCIELVANRFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVD 1266
            MCIELVANRFLRKMVRVLV             D L++L D             DGLCL+D
Sbjct: 329  MCIELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLID 388

Query: 1267 VGYQDFDPQICLI 1305
            VG+ +FDPQIC I
Sbjct: 389  VGFTEFDPQICFI 401


>ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622951 [Citrus sinensis]
          Length = 454

 Score =  449 bits (1155), Expect = e-123
 Identities = 231/426 (54%), Positives = 287/426 (67%), Gaps = 4/426 (0%)
 Frame = +1

Query: 40   LFMEEKQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLS 219
            L ME + R E+K+Y HY HTD+C F+RW A+E +++M ARPW  V  FYS++V+GR +LS
Sbjct: 32   LSMESQSRAEKKVYVHYNHTDSCKFARWTAKESYEFMRARPWQDVVDFYSDIVSGRLTLS 91

Query: 220  PLFGPVERQGHDAGDFAGSSDEYKLTSEQYKDQ--QGKWARLTFKIIISYLGKSFDGWQK 393
             LFG    +     +      E +  S+  +D+   G+WAR  FKI++SY G SFDGWQK
Sbjct: 92   DLFGTERTRTSSIHNDENEIPEVEAGSDANEDRAGSGRWARANFKIVVSYHGPSFDGWQK 151

Query: 394  QPGLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTW 573
            QP L+TVQGLVE  +G F+DEK+A+ LKE+  P+EG A VAGRTDKGVTAL QVCSFYTW
Sbjct: 152  QPDLNTVQGLVEKCLGSFVDEKRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTW 211

Query: 574  RKDIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERK 753
            RKD++  E+EDAIN+AAPG+IR +SV +VSRVFHPNF AKWRRYLYIFPL++GE+  +  
Sbjct: 212  RKDVKPSEIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQSI 271

Query: 754  KVEEDEQTQFVSNSEGDWLSKEHKHFLEENTGEFANPKDELESKDKPTTFSTTRVSQLLQ 933
              E + +    SN+ G    K+     E       N +    S +KP  F+  RV+ LLQ
Sbjct: 272  DSEVEVENFHTSNNVG----KQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQ 327

Query: 934  QLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPC--LDHTGSTKIMCIELVA 1107
            +LEGKLLSYK FARDTKASRN+GPPTECFIYHARA EA LPC   DH    K+MC+ELVA
Sbjct: 328  RLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRKVMCVELVA 387

Query: 1108 NRFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFD 1287
            NRFLRKMVRVLV             D L++L D             +GLCLVDVGY +FD
Sbjct: 388  NRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCRRATAPPAPPEGLCLVDVGYTNFD 447

Query: 1288 PQICLI 1305
            PQ  LI
Sbjct: 448  PQNSLI 453


>ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citrus clementina]
            gi|557556408|gb|ESR66422.1| hypothetical protein
            CICLE_v10008288mg [Citrus clementina]
          Length = 447

 Score =  449 bits (1155), Expect = e-123
 Identities = 231/426 (54%), Positives = 287/426 (67%), Gaps = 4/426 (0%)
 Frame = +1

Query: 40   LFMEEKQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLS 219
            L ME + R E+K+Y HY HTD+C F+RW A+E +++M ARPW  V  FYS++V+GR +LS
Sbjct: 25   LSMESQSRAEKKVYVHYNHTDSCKFARWTAKESYEFMRARPWQDVVDFYSDIVSGRLTLS 84

Query: 220  PLFGPVERQGHDAGDFAGSSDEYKLTSEQYKDQ--QGKWARLTFKIIISYLGKSFDGWQK 393
             LFG    +     +      E +  S+  +D+   G+WAR  FKI++SY G SFDGWQK
Sbjct: 85   DLFGTERTRTSSIHNDENEIPEVEAGSDANEDRAGSGRWARANFKIVVSYHGPSFDGWQK 144

Query: 394  QPGLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTW 573
            QP L+TVQGLVE  +G F+DEK+A+ LKE+  P+EG A VAGRTDKGVTAL QVCSFYTW
Sbjct: 145  QPDLNTVQGLVEKCLGSFVDEKRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTW 204

Query: 574  RKDIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERK 753
            RKD++  E+EDAIN+AAPG+IR +SV +VSRVFHPNF AKWRRYLYIFPL++GE+  +  
Sbjct: 205  RKDVKPSEIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQSI 264

Query: 754  KVEEDEQTQFVSNSEGDWLSKEHKHFLEENTGEFANPKDELESKDKPTTFSTTRVSQLLQ 933
              E + +    SN+ G    K+     E       N +    S +KP  F+  RV+ LLQ
Sbjct: 265  DSEVEVENFHTSNNVG----KQSNGCYENIENLLINDEGGFGSHEKPRNFTICRVNLLLQ 320

Query: 934  QLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPC--LDHTGSTKIMCIELVA 1107
            +LEGKLLSYK FARDTKASRN+GPPTECFIYHARA EA LPC   DH    K+MC+ELVA
Sbjct: 321  RLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRKVMCVELVA 380

Query: 1108 NRFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFD 1287
            NRFLRKMVRVLV             D L++L D             +GLCLVDVGY +FD
Sbjct: 381  NRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCRRATAPPAPPEGLCLVDVGYTNFD 440

Query: 1288 PQICLI 1305
            PQ  LI
Sbjct: 441  PQNSLI 446


>gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 446

 Score =  448 bits (1153), Expect = e-123
 Identities = 232/437 (53%), Positives = 295/437 (67%), Gaps = 4/437 (0%)
 Frame = +1

Query: 7    VSPLRAPTPTNLFMEEKQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFY 186
            ++P+R      + +E +     K Y HY H+D C FSRW ARE + +MY RPW +V  FY
Sbjct: 17   LNPIRR---VGVVVEMETHSTNKDYVHYNHSDPCRFSRWTARESYQFMYGRPWQQVLDFY 73

Query: 187  SELVNGRSSLSPLFGPVERQGHDAGDFAGSSDEY---KLTSEQYKDQQGKWARLTFKIII 357
            S LVNG +S S LF   ++   D  D+     E    K+  ++ +++ G+WAR TFK+++
Sbjct: 74   SNLVNGTTSFSSLFPLHKKYQVDDDDYDAEIPEISDDKVKLKKSEERSGRWARATFKVVL 133

Query: 358  SYLGKSFDGWQKQPGLDTVQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGV 537
             Y G SFDGWQKQPGL+TVQGLVE S+GRF+DEKKA+ LK++ LP+E    VAGRTDKGV
Sbjct: 134  GYHGASFDGWQKQPGLNTVQGLVERSLGRFVDEKKAQLLKDKCLPLEACTVVAGRTDKGV 193

Query: 538  TALNQVCSFYTWRKDIEAREVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIF 717
            TAL QVCSFYTWRKDI  +++E+AIN AA G+++A SV  VSRVFHPNF AKWRRYLYIF
Sbjct: 194  TALQQVCSFYTWRKDITCQDIEEAINNAALGKLKAKSVSEVSRVFHPNFSAKWRRYLYIF 253

Query: 718  PLHEGEEGTERKKVEEDEQT-QFVSNSEGDWLSKEHKHFLEENTGEFANPKDELESKDKP 894
            P ++ E+  +  K  E+ +T + + +  G+W  +   + + +++       +ELES  KP
Sbjct: 254  PFNDEEDEEQSNKNGENLETYEKIESGCGEWNDESFGNLIIDDS-------EELESGKKP 306

Query: 895  TTFSTTRVSQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTG 1074
            ++FS +RV QLL+ LEGKLLSYKMFARDTKASRN GPPTECFIYHARAAEARLP  D T 
Sbjct: 307  SSFSVSRVDQLLRLLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPTSDCTE 366

Query: 1075 STKIMCIELVANRFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGL 1254
              KIMC+ELVANRFLRKMVRVLV             D L++L D             DGL
Sbjct: 367  GRKIMCVELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMDATCRRATAPPAPPDGL 426

Query: 1255 CLVDVGYQDFDPQICLI 1305
            CLVDVGY +F P  CLI
Sbjct: 427  CLVDVGYSEFKPNNCLI 443


>gb|ESW32209.1| hypothetical protein PHAVU_002G302500g [Phaseolus vulgaris]
          Length = 440

 Score =  446 bits (1146), Expect = e-122
 Identities = 229/413 (55%), Positives = 279/413 (67%)
 Frame = +1

Query: 67   EEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFGPVERQ 246
            E + + HY HTD   ++RW ARE F +MYARPW RVN FY  +V    SLS LFGP    
Sbjct: 44   ETESHVHYNHTDPSEYARWTARESFQFMYARPWQRVNDFYFNVVRANLSLSLLFGPQTIL 103

Query: 247  GHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLDTVQGLV 426
             H+    A  SD+ +L S   +D+ G+WAR TFKII+SY G SFDGWQKQPGL+TVQG+V
Sbjct: 104  DHNDTGIAALSDQSELESVASEDRSGRWARRTFKIILSYHGGSFDGWQKQPGLNTVQGIV 163

Query: 427  ESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIEAREVED 606
            E+S+G+F+DEKK + LK++GLP+EG A VAGRTDKGVT L QVCSFYTW+KD++ R++ED
Sbjct: 164  EASLGKFVDEKKTQLLKDKGLPIEGCAVVAGRTDKGVTGLQQVCSFYTWKKDVKPRDIED 223

Query: 607  AINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEEDEQTQFV 786
            AIN AA G++R +SV  VSRVFHPNF AKWR YLYIFPL  G             + Q  
Sbjct: 224  AINQAALGKLRVISVSEVSRVFHPNFSAKWRHYLYIFPLTNG------------YRDQSN 271

Query: 787  SNSEGDWLSKEHKHFLEENTGEFANPKDELESKDKPTTFSTTRVSQLLQQLEGKLLSYKM 966
            SN E   +SK        N    ++ KD +E+++K   FS ++V+ LL++LEGKLLSYKM
Sbjct: 272  SNGESCDISK-------YNEMHDSSSKDGIENQEKSYLFSVSKVNVLLRKLEGKLLSYKM 324

Query: 967  FARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVANRFLRKMVRVLVX 1146
            FARDTKASRN GPPTECF+YHARA E +LP  D    TK+MC+ELVANRFLRKMVRVLV 
Sbjct: 325  FARDTKASRNDGPPTECFVYHARAMEVKLPTTDCGEETKVMCVELVANRFLRKMVRVLVA 384

Query: 1147 XXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDPQICLI 1305
                        D LI+L D             DGLCLVDVGY +FDPQ C I
Sbjct: 385  TSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPQKCFI 437


>gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
          Length = 444

 Score =  443 bits (1139), Expect = e-122
 Identities = 230/423 (54%), Positives = 287/423 (67%), Gaps = 6/423 (1%)
 Frame = +1

Query: 55   KQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFGP 234
            +   E K+Y HY H+D+C+ +RW ARE + +MY R W  V  FYS +VNGR +LS LFG 
Sbjct: 34   ENEAENKVYVHYNHSDSCSSARWTARESYRFMYDRAWQDVIDFYSNVVNGRLTLSTLFG- 92

Query: 235  VERQGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLDTV 414
             E   HD  +    SDE         ++ G+W R+TFKIIISY G +FDGWQKQPGL+TV
Sbjct: 93   TETSIHDDSETVEVSDEKG-------ERSGRWERVTFKIIISYNGGAFDGWQKQPGLNTV 145

Query: 415  QGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIEAR 594
            Q +VE S+GRF+DEKKA+ LKE+  P+EG A VAGRTDKGV+A+ QVCSFYTWRKD++  
Sbjct: 146  QEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPW 205

Query: 595  EVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEEDEQ 774
            ++EDAIN+ APG++R VSV  VSRVFHPNF AKWR YLYIFPL   E   E++  E  ++
Sbjct: 206  DIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQE--IEKQSCENKKE 263

Query: 775  TQ-FVSNSEGDWLSKEHKHFLEENTGE-----FANPKDELESKDKPTTFSTTRVSQLLQQ 936
             + F+S+      +++   +LE    E       +    LE+ +KPT FS  RV+QLLQQ
Sbjct: 264  VENFISDGN---YNEQRNGYLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQ 320

Query: 937  LEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVANRF 1116
            LE KLLSYKMFARDTKASRN+GPPTECF+YHARAAEAR+PC DH    ++MC+ELVANRF
Sbjct: 321  LERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCSDHGEGREVMCVELVANRF 380

Query: 1117 LRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDPQI 1296
            LRKMVRVLV             D L++L               DGLCLVDVGY +FDPQ 
Sbjct: 381  LRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDPQN 440

Query: 1297 CLI 1305
            CL+
Sbjct: 441  CLL 443


>ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-like [Cicer arietinum]
          Length = 422

 Score =  440 bits (1132), Expect = e-121
 Identities = 226/409 (55%), Positives = 276/409 (67%)
 Frame = +1

Query: 79   YYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFGPVERQGHDA 258
            + HY HT    ++RWNARE F++MYARPW  VN FY   V G SSL  LFG      HD 
Sbjct: 30   HVHYNHTHPSKYTRWNARESFEFMYARPWQLVNDFYLNAVRGNSSLPLLFGVQTVPDHDD 89

Query: 259  GDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLDTVQGLVESSI 438
               +  SD+ +L     KD+ G+WAR+ FKI++SY G+SFDGWQKQP L+TVQ +VE+S+
Sbjct: 90   SGISVLSDKTELEKGVSKDRGGRWARINFKIVLSYHGESFDGWQKQPSLNTVQSVVEASL 149

Query: 439  GRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIEAREVEDAINT 618
            G+F+DE K + LKE+GLP+EG ASVAGRTDKGVTAL QVCSFYTW+KDI  R++EDAIN 
Sbjct: 150  GKFVDEMKTQLLKEKGLPIEGCASVAGRTDKGVTALQQVCSFYTWKKDINPRDIEDAIND 209

Query: 619  AAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEEDEQTQFVSNSE 798
             APG++R +SV  VSR FHPNF AKWRRYLYIFPL + E   ++    E+   +F+ N  
Sbjct: 210  GAPGKLRVISVHEVSRAFHPNFSAKWRRYLYIFPLTD-EGDKDQSGSNEESCDRFIYNEV 268

Query: 799  GDWLSKEHKHFLEENTGEFANPKDELESKDKPTTFSTTRVSQLLQQLEGKLLSYKMFARD 978
             D +S                 KDELE++ K   FS  +V++LLQ+LEGKLLSYKMFARD
Sbjct: 269  CDSVS-----------------KDELENEMKSYVFSVRKVNRLLQKLEGKLLSYKMFARD 311

Query: 979  TKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVANRFLRKMVRVLVXXXXX 1158
            TKASRN GPPTECF+YHARA EARLP  D+ G  ++MCIELVANRFLRKMVRVLV     
Sbjct: 312  TKASRNDGPPTECFVYHARAMEARLPTTDN-GEARVMCIELVANRFLRKMVRVLVATTIR 370

Query: 1159 XXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDPQICLI 1305
                    D L++L D             DGLCLVDVGY +FD + C I
Sbjct: 371  EAAAGAEDDALLRLMDATCRRATAPPAPPDGLCLVDVGYAEFDQKKCFI 419


>gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
          Length = 446

 Score =  438 bits (1126), Expect = e-120
 Identities = 230/425 (54%), Positives = 287/425 (67%), Gaps = 8/425 (1%)
 Frame = +1

Query: 55   KQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFGP 234
            +   E K+Y HY H+D+C+ +RW ARE + +MY R W  V  FYS +VNGR +LS LFG 
Sbjct: 34   ENEAENKVYVHYNHSDSCSSARWTARESYRFMYDRAWQDVIDFYSNVVNGRLTLSTLFG- 92

Query: 235  VERQGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLDTV 414
             E   HD  +    SDE         ++ G+W R+TFKIIISY G +FDGWQKQPGL+TV
Sbjct: 93   TETSIHDDSETVEVSDEKG-------ERSGRWERVTFKIIISYNGGAFDGWQKQPGLNTV 145

Query: 415  QGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIEAR 594
            Q +VE S+GRF+DEKKA+ LKE+  P+EG A VAGRTDKGV+A+ QVCSFYTWRKD++  
Sbjct: 146  QEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPW 205

Query: 595  EVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEEDEQ 774
            ++EDAIN+ APG++R VSV  VSRVFHPNF AKWR YLYIFPL   E   E++  E  ++
Sbjct: 206  DIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQE--IEKQSCENKKE 263

Query: 775  TQ-FVSNSEGDWLSKEHKHFLEENTGE-----FANPKDELESKDKPTTFSTTRVSQLLQQ 936
             + F+S+      +++   +LE    E       +    LE+ +KPT FS  RV+QLLQQ
Sbjct: 264  VENFISDGN---YNEQRNGYLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQ 320

Query: 937  LEGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCL--DHTGSTKIMCIELVAN 1110
            LE KLLSYKMFARDTKASRN+GPPTECF+YHARAAEAR+PC   DH    ++MC+ELVAN
Sbjct: 321  LERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCSVNDHGEGREVMCVELVAN 380

Query: 1111 RFLRKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDP 1290
            RFLRKMVRVLV             D L++L               DGLCLVDVGY +FDP
Sbjct: 381  RFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDP 440

Query: 1291 QICLI 1305
            Q CL+
Sbjct: 441  QNCLL 445


>ref|XP_003532450.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 444

 Score =  437 bits (1124), Expect = e-120
 Identities = 226/417 (54%), Positives = 276/417 (66%), Gaps = 4/417 (0%)
 Frame = +1

Query: 67   EEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFGP---- 234
            + + + HY HT    ++RW ARE F++MYARPW RVN FY  +V    SL  LFG     
Sbjct: 46   QTETHVHYNHTHPSKYARWTARESFEFMYARPWQRVNDFYLNIVRANLSLPLLFGAQTLV 105

Query: 235  VERQGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLDTV 414
            V+         +GSS+   + SE   D+ G+WAR TFKII+SY G SFDGWQKQPGL+TV
Sbjct: 106  VDHNDTGIAALSGSSELESVASE---DRSGRWARTTFKIILSYHGGSFDGWQKQPGLNTV 162

Query: 415  QGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIEAR 594
            Q +VE S+G+F+DEKK + LK++GLP+EG A VAGRTDKGVT L QVCSFYTW+KD++ R
Sbjct: 163  QSIVEGSLGKFVDEKKTQLLKDKGLPIEGCAIVAGRTDKGVTGLQQVCSFYTWKKDVKPR 222

Query: 595  EVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEEDEQ 774
            ++EDAIN AAPG++R +SV  VSRVFHPNF AKWRRYLYIFPL  G   T++     +  
Sbjct: 223  DIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGGY-TDQSSDNGEFY 281

Query: 775  TQFVSNSEGDWLSKEHKHFLEENTGEFANPKDELESKDKPTTFSTTRVSQLLQQLEGKLL 954
              F  N   D  S                 KDELE++ K   FS ++V++LL++LEGKLL
Sbjct: 282  DSFKYNEIHDSAS-----------------KDELENEKKSYAFSISKVNRLLRKLEGKLL 324

Query: 955  SYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVANRFLRKMVR 1134
            SYKMFARDTKASRN GPPTECF+YHARA E +LP  DH   TK+MC+ELVANRFLRKMVR
Sbjct: 325  SYKMFARDTKASRNDGPPTECFVYHARAMEVKLPATDHGEETKVMCVELVANRFLRKMVR 384

Query: 1135 VLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDPQICLI 1305
            VLV             D LI+L D             DGLCLVDVGY +F+PQ C I
Sbjct: 385  VLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGYTEFEPQKCFI 441


>gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus persica]
          Length = 409

 Score =  437 bits (1123), Expect = e-120
 Identities = 224/422 (53%), Positives = 286/422 (67%), Gaps = 8/422 (1%)
 Frame = +1

Query: 64   VEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFGPVER 243
            +E K+   Y HTD C+F+RW  +ECF +M ARPW +V  FYS++V  R  LS L G    
Sbjct: 1    MENKVLIQYNHTDPCSFARWTTKECFQFMSARPWQQVMDFYSDVVKDRKPLSALLGKA-- 58

Query: 244  QGHDAGDFAGSSDEYKLTS-EQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLDTVQG 420
                    + S+   +L S    +D+ G+WARLTFKI++SY G SFDGWQ+QPGL+TVQ 
Sbjct: 59   ------CLSKSNINNRLESLPPSQDKGGRWARLTFKIVVSYHGGSFDGWQRQPGLNTVQS 112

Query: 421  LVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIEAREV 600
            +VE S+G+F+DE+KA+ LK++GLP+EG A VAGRTDKGVTA++QVCSFYTWRKD++++++
Sbjct: 113  VVEKSLGKFVDERKAQMLKDKGLPLEGAALVAGRTDKGVTAVHQVCSFYTWRKDVKSQDI 172

Query: 601  EDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEEDEQTQ 780
             DAIN+AAPG++R VSV  VSR FHPNF AKWR YLYIFP ++ EE  E+     +    
Sbjct: 173  TDAINSAAPGKLRVVSVTEVSRAFHPNFTAKWRHYLYIFPFND-EEDMEQSNQSGENAQN 231

Query: 781  FVSNSEGDWLSKEHKH------FLEENTGEFA-NPKDELESKDKPTTFSTTRVSQLLQQL 939
            F S      L   H+H        E N G    N  ++LE+  KP  F+ +RV+QLLQ+L
Sbjct: 232  FKS------LENYHEHKNGCDQCNEANVGNLVINDNEDLETL-KPREFTVSRVNQLLQKL 284

Query: 940  EGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVANRFL 1119
            EGKLLSYKMFARDTK SRN GPPTECF+YHARA E++LPC +H    ++MCIELVANRFL
Sbjct: 285  EGKLLSYKMFARDTKPSRNEGPPTECFLYHARAKESKLPCSEHEKGRRVMCIELVANRFL 344

Query: 1120 RKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDPQIC 1299
            R+MVRVLV             D L++L D             DGLCLVDVGY++FDPQ C
Sbjct: 345  RRMVRVLVATSIREAAAGADEDALLKLMDATCRRATAPPAPPDGLCLVDVGYEEFDPQDC 404

Query: 1300 LI 1305
            LI
Sbjct: 405  LI 406


>ref|XP_004299762.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca subsp.
            vesca]
          Length = 410

 Score =  435 bits (1118), Expect = e-119
 Identities = 225/422 (53%), Positives = 281/422 (66%), Gaps = 8/422 (1%)
 Frame = +1

Query: 64   VEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFGPVER 243
            +E K+   Y HTD C F+RW  +E F +M ARPW +V  FYS++V G+  LS L G    
Sbjct: 1    MESKVLVQYNHTDPCAFARWTTKESFQFMSARPWQQVIDFYSDVVKGQKPLSALLG---- 56

Query: 244  QGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLDTVQGL 423
                    + +     + S   +++ G+WARLTFKI++SY G SFDGWQKQP L TVQ +
Sbjct: 57   ----TSSLSKNRICNSIESVNSQNRGGRWARLTFKIVVSYHGGSFDGWQKQPELYTVQSV 112

Query: 424  VESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIEAREVE 603
            VE  +GRF+DEKKA+ LKE+GLP+EG A+VAGRTDKGVTALNQVCSFYTW KD+  +++ 
Sbjct: 113  VEQCLGRFVDEKKAQMLKEKGLPLEGAATVAGRTDKGVTALNQVCSFYTWSKDVRCQDIA 172

Query: 604  DAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEEDEQTQF 783
            DAI+ AAPG++R VSV  VSRVFHPNF AKWRRYLYIFP ++ EE  E+   +  E  Q 
Sbjct: 173  DAIDNAAPGKLRTVSVTEVSRVFHPNFSAKWRRYLYIFPFNDDEEDREQSN-DTGENAQI 231

Query: 784  VSNSEGDWLSKEHKHFL------EENTGEFANPKDE--LESKDKPTTFSTTRVSQLLQQL 939
            +   E       H+H +      E N G   N  D+  LE++ KP  FS +RV++LLQ+L
Sbjct: 232  LKIKE-----NHHEHEVVSDNCSEANVGN-TNITDDVGLEAEKKPQMFSVSRVNKLLQKL 285

Query: 940  EGKLLSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVANRFL 1119
            EGKLLSYKMFARDTKASRN GPPTECF++HARA E RLPC +H    +IMCIEL+ANRFL
Sbjct: 286  EGKLLSYKMFARDTKASRNEGPPTECFVFHARAREYRLPCSEHEKGRRIMCIELIANRFL 345

Query: 1120 RKMVRVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDPQIC 1299
            R+M+RVLV             D LI+L D             DGLCLVDVGY++FDP  C
Sbjct: 346  RRMIRVLVATSIREAAAGADEDALIKLMDATCRRATAPPAPPDGLCLVDVGYEEFDPLDC 405

Query: 1300 LI 1305
            LI
Sbjct: 406  LI 407


>ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-like [Solanum lycopersicum]
          Length = 436

 Score =  431 bits (1109), Expect = e-118
 Identities = 213/417 (51%), Positives = 279/417 (66%), Gaps = 4/417 (0%)
 Frame = +1

Query: 67   EEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFGPVERQ 246
            ++K+++HY HTD+C FSRW +REC+++MYARPW +V  FY+++V G  SLS LFG     
Sbjct: 24   QQKVHFHYNHTDSCKFSRWTSRECYEFMYARPWHKVVDFYADMVKGHISLSGLFGKETPA 83

Query: 247  GHDAGDFAGSSDEYKLTS----EQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLDTV 414
             H+  +     ++ +L +    ++ +D+ G+WAR  F I++SY G SFDGWQKQP L+TV
Sbjct: 84   DHEDAEIREDHEKSELVNIPVKDKSRDKSGRWARANFMIVLSYHGGSFDGWQKQPDLNTV 143

Query: 415  QGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIEAR 594
            QGLVE S+G F+DEKKA+ LK++ LP+E  A VAGRTDKGV+A  QVCSFYTWRKD++  
Sbjct: 144  QGLVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKGVSASQQVCSFYTWRKDVKIE 203

Query: 595  EVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEEDEQ 774
            +V+ A++ AAPG+IR VS+ +VSR FHPNF AKWR YLYIFP+ +     +  ++  D+ 
Sbjct: 204  DVKAALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHYLYIFPIDDVLGEKQGGQIWIDDS 263

Query: 775  TQFVSNSEGDWLSKEHKHFLEENTGEFANPKDELESKDKPTTFSTTRVSQLLQQLEGKLL 954
            T     +E D    +     + N  E  N  D+L   +KPT F   +V++LL QLEGKLL
Sbjct: 264  TNVHQQNECDKSDVD-----KSNVNEINNENDKLVHGNKPTKFEVGKVNRLLGQLEGKLL 318

Query: 955  SYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVANRFLRKMVR 1134
            SYKMFARDTKASRN+GPPTECF++HARA E  +PC       K MCIELVANRFLRKMVR
Sbjct: 319  SYKMFARDTKASRNIGPPTECFVFHARAIETSIPCAKDGSHMKTMCIELVANRFLRKMVR 378

Query: 1135 VLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDPQICLI 1305
            VLV             D L++L D             DGLCLVDVGY D+D + CLI
Sbjct: 379  VLVATAIREAAAGADDDALLKLMDATCRRATAPPAPPDGLCLVDVGYTDYDIRHCLI 435


>ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
            gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase A
            [Medicago truncatula]
          Length = 400

 Score =  430 bits (1106), Expect = e-118
 Identities = 220/418 (52%), Positives = 276/418 (66%)
 Frame = +1

Query: 52   EKQRVEEKIYYHYQHTDTCNFSRWNARECFDYMYARPWDRVNHFYSELVNGRSSLSPLFG 231
            E Q   +  + HY HT    ++RWNARE F++MYARPW RVNHFYS  V G  SL  LF 
Sbjct: 2    EHQSERDSHHVHYNHTHPSKYARWNARESFEFMYARPWQRVNHFYSNTVRGNFSLPLLFQ 61

Query: 232  PVERQGHDAGDFAGSSDEYKLTSEQYKDQQGKWARLTFKIIISYLGKSFDGWQKQPGLDT 411
                  HD+       +  +  S   KD+ GKWAR  FKI++SY G SFDGWQKQP L+T
Sbjct: 62   SQTLPVHDSR----VPEISEFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNLNT 117

Query: 412  VQGLVESSIGRFIDEKKAEQLKERGLPVEGLASVAGRTDKGVTALNQVCSFYTWRKDIEA 591
            VQ +VE S+G+F+DE K + LK++GLP++G A+VAGRTDKGVTAL QVCSFYTW+KDI+ 
Sbjct: 118  VQSVVEVSLGKFVDENKTQLLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKP 177

Query: 592  REVEDAINTAAPGRIRAVSVLRVSRVFHPNFCAKWRRYLYIFPLHEGEEGTERKKVEEDE 771
            RE+EDAIN AAPG++R VSV  VSR FHPNF AKWRRYLYIFPL +G++  ++     + 
Sbjct: 178  REIEDAINDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQD-KDQSGGNGES 236

Query: 772  QTQFVSNSEGDWLSKEHKHFLEENTGEFANPKDELESKDKPTTFSTTRVSQLLQQLEGKL 951
               F+ N   D                 ++ KDELE ++K   F   +V++LLQ+LEGK+
Sbjct: 237  CDSFIYNEICD-----------------SDSKDELEKENKSYVFGVRKVNRLLQKLEGKM 279

Query: 952  LSYKMFARDTKASRNVGPPTECFIYHARAAEARLPCLDHTGSTKIMCIELVANRFLRKMV 1131
            LSYKMFARDTKASRN GPPTECF++HARA EA+LP  ++   T++MCIELVANRFLRKMV
Sbjct: 280  LSYKMFARDTKASRNDGPPTECFVHHARAMEAKLPITENGEETRVMCIELVANRFLRKMV 339

Query: 1132 RVLVXXXXXXXXXXXXXDILIQLTDXXXXXXXXXXXXXDGLCLVDVGYQDFDPQICLI 1305
            RVLV             D L++L D             DGLCLVDVGY +F+ + C I
Sbjct: 340  RVLVATTIREAAAGAEDDALLKLMDATCRRATAPPAPPDGLCLVDVGYAEFEREKCFI 397