BLASTX nr result
ID: Rheum21_contig00008382
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00008382
(310 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ... 96 6e-18
emb|CBI21038.3| unnamed protein product [Vitis vinifera] 94 2e-17
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 94 2e-17
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps... 92 9e-17
gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidops... 91 1e-16
ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha... 91 1e-16
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu... 87 2e-15
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 86 4e-15
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco... 86 5e-15
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 85 9e-15
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 84 1e-14
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 83 3e-14
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 83 3e-14
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] 83 4e-14
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 83 4e-14
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 83 4e-14
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 82 6e-14
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 82 7e-14
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 80 2e-13
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe... 80 3e-13
>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 95.5 bits (236), Expect = 6e-18
Identities = 44/79 (55%), Positives = 62/79 (78%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YE+KASAWY VTYHP+ +K ++E + P+ + H VMLSFAWI ADYLA+IK+R G+
Sbjct: 1120 LYEKKASAWYHVTYHPKWVKKSLELQDPDEPSSHAVMLSFAWIAADYLAKIKIRS-GEMG 1178
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ ++KP+DSLAKFL+ R+
Sbjct: 1179 NIDSAKPVDSLAKFLAQRL 1197
>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 94.0 bits (232), Expect = 2e-17
Identities = 48/79 (60%), Positives = 61/79 (77%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YE+KASAWYQVTYHP +K ++E + P+ +VMLSFAWI ADYLARIK+RR G N
Sbjct: 958 LYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGN 1017
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ +SKPI+SLA+FL RI
Sbjct: 1018 VD-SSKPINSLARFLVDRI 1035
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 94.0 bits (232), Expect = 2e-17
Identities = 48/79 (60%), Positives = 61/79 (77%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YE+KASAWYQVTYHP +K ++E + P+ +VMLSFAWI ADYLARIK+RR G N
Sbjct: 1120 LYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGN 1179
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ +SKPI+SLA+FL RI
Sbjct: 1180 VD-SSKPINSLARFLVDRI 1197
>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
gi|482559225|gb|EOA23416.1| hypothetical protein
CARUB_v10016597mg [Capsella rubella]
Length = 1197
Score = 91.7 bits (226), Expect = 9e-17
Identities = 45/81 (55%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKV--RRIGK 174
+YE+KASAWY VTYHP+ + ++E + P+ + H VMLSFAWI ADYLARIK+ R IG
Sbjct: 1120 LYEKKASAWYHVTYHPKWVTKSLELQDPDESSTHAVMLSFAWIAADYLARIKIRSREIGN 1179
Query: 175 KNDEGTSKPIDSLAKFLSLRI 237
+ ++KP+DSLAKFL+ R+
Sbjct: 1180 MD---SAKPVDSLAKFLAQRL 1197
>gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 91.3 bits (225), Expect = 1e-16
Identities = 45/79 (56%), Positives = 60/79 (75%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YE+KASAWY VTYHPE +K ++E + P+ E+ H MLSFAWI ADYLARIK+R +
Sbjct: 1120 LYEKKASAWYHVTYHPEWVKKSLELQDPD-ESSHAAMLSFAWIAADYLARIKIRS-REMG 1177
Query: 181 DEGTSKPIDSLAKFLSLRI 237
++KP+DSLAKFL+ R+
Sbjct: 1178 SIDSAKPVDSLAKFLAQRL 1196
>ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName:
Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative
RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA
polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase
6 [Arabidopsis thaliana]
Length = 1196
Score = 91.3 bits (225), Expect = 1e-16
Identities = 45/79 (56%), Positives = 60/79 (75%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YE+KASAWY VTYHPE +K ++E + P+ E+ H MLSFAWI ADYLARIK+R +
Sbjct: 1120 LYEKKASAWYHVTYHPEWVKKSLELQDPD-ESSHAAMLSFAWIAADYLARIKIRS-REMG 1177
Query: 181 DEGTSKPIDSLAKFLSLRI 237
++KP+DSLAKFL+ R+
Sbjct: 1178 SIDSAKPVDSLAKFLAQRL 1196
>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
6 [Gossypium hirsutum]
Length = 1196
Score = 87.0 bits (214), Expect = 2e-15
Identities = 45/79 (56%), Positives = 60/79 (75%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YERKASAWYQVTYHPE ++ +E + P+ + VMLSFAWI ADYLARIKVR G +N
Sbjct: 1120 LYERKASAWYQVTYHPEWVQKKLEFQKPDGD-EGVVMLSFAWIAADYLARIKVRHQGTEN 1178
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ +KP++SL ++L+ RI
Sbjct: 1179 LD-FAKPVNSLVRYLADRI 1196
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 86.3 bits (212), Expect = 4e-15
Identities = 44/79 (55%), Positives = 58/79 (73%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YERKASAWYQVTYHP + ++E ++P+A VMLSFAWI ADYLARIK+R G
Sbjct: 1121 MYERKASAWYQVTYHPHWVARSLELQIPDA-VSSTVMLSFAWIAADYLARIKIRHRGLPY 1179
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ T KPI+SL ++L+ +I
Sbjct: 1180 SDST-KPINSLGRYLADKI 1197
>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
6 [Solanum lycopersicum]
Length = 1197
Score = 85.9 bits (211), Expect = 5e-15
Identities = 43/79 (54%), Positives = 61/79 (77%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YERKA AWY+VTYHP + ++E ++P+A ++ VMLSFAWI ADY+ARIK+R+ G +N
Sbjct: 1121 MYERKAFAWYRVTYHPHWVTRSLELQLPDAVSNG-VMLSFAWIAADYIARIKIRQRGMQN 1179
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ T KPIDSL ++L +I
Sbjct: 1180 FDST-KPIDSLGRYLVNKI 1197
>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
tuberosum]
Length = 1198
Score = 85.1 bits (209), Expect = 9e-15
Identities = 42/79 (53%), Positives = 60/79 (75%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YERKASAWY+VTYHP + ++E ++P+A + VMLSFAWI ADY+ARIK+R+ G +N
Sbjct: 1122 MYERKASAWYRVTYHPHWVTRSLELQLPDA-VSNGVMLSFAWIAADYIARIKIRQRGMQN 1180
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ T KPI+ L ++L +I
Sbjct: 1181 SDST-KPINFLGRYLVNKI 1198
>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
Length = 1194
Score = 84.3 bits (207), Expect = 1e-14
Identities = 42/79 (53%), Positives = 57/79 (72%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YE++ASAWYQ+TYHP+ +K + + E + VMLSFAWI ADYLARIK+R G
Sbjct: 1117 LYEKRASAWYQITYHPKWVKKSQDMHDQLEEVKNVVMLSFAWIAADYLARIKIRCRG-VG 1175
Query: 181 DEGTSKPIDSLAKFLSLRI 237
D ++KPI+SL K+L+ RI
Sbjct: 1176 DADSTKPINSLGKYLADRI 1194
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 83.2 bits (204), Expect = 3e-14
Identities = 45/79 (56%), Positives = 58/79 (73%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YE+KASAWYQV YHP+ + +ME + P+A A MLSFAWI ADYLARIK+R G
Sbjct: 1127 LYEQKASAWYQVAYHPKWVNKSMELQEPDA-AGCASMLSFAWIAADYLARIKIRCRGFDG 1185
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ TSKP++SL K+L+ RI
Sbjct: 1186 VD-TSKPVNSLVKYLADRI 1203
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 83.2 bits (204), Expect = 3e-14
Identities = 43/79 (54%), Positives = 59/79 (74%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YE+KASAWYQV YHP +K ++E + P+ A VMLSFAWI ADYLARIK+R N
Sbjct: 1124 LYEQKASAWYQVVYHPHWVKKSLELQDPDG-AGTSVMLSFAWIAADYLARIKIRHRETGN 1182
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ ++KP++SLAK+L+ R+
Sbjct: 1183 VD-SAKPVNSLAKYLADRM 1200
>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
Length = 1197
Score = 82.8 bits (203), Expect = 4e-14
Identities = 44/79 (55%), Positives = 58/79 (73%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YERKASAWYQVTYHP+ ++ +E + + A VMLSFAWI ADYLARIK+R G N
Sbjct: 1121 LYERKASAWYQVTYHPKWVEKKLELQKSDG-ADPVVMLSFAWIAADYLARIKIRSQGTGN 1179
Query: 181 DEGTSKPIDSLAKFLSLRI 237
+ SKP++SL K+L+ +I
Sbjct: 1180 VD-FSKPVNSLVKYLADKI 1197
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 82.8 bits (203), Expect = 4e-14
Identities = 45/81 (55%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVR--RIGK 174
+YERKASAWYQVTYHP ++ ++E + + A VMLSFAWI ADYLARIK+R RIG
Sbjct: 1122 LYERKASAWYQVTYHPHWIQKSLELQDSDG-AGISVMLSFAWIAADYLARIKIRHSRIGN 1180
Query: 175 KNDEGTSKPIDSLAKFLSLRI 237
+ ++KP++SLAK+L+ R+
Sbjct: 1181 VD---SAKPVNSLAKYLADRM 1198
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 82.8 bits (203), Expect = 4e-14
Identities = 42/75 (56%), Positives = 56/75 (74%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YERKASAWYQVTYHP + ++E ++P+A + VMLSFAWI ADYLARIK+R +
Sbjct: 1121 MYERKASAWYQVTYHPHWVARSLELQLPDA-VSNTVMLSFAWIAADYLARIKIRHRRLQY 1179
Query: 181 DEGTSKPIDSLAKFL 225
+ T KPI+SL ++L
Sbjct: 1180 SDST-KPINSLGRYL 1193
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 82.4 bits (202), Expect = 6e-14
Identities = 42/75 (56%), Positives = 56/75 (74%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YERKASAWYQVTY+P + ++E ++P+A VMLSFAWI ADYLARIK+R G +
Sbjct: 1121 MYERKASAWYQVTYNPHWVARSLELQLPDA-VSSTVMLSFAWIAADYLARIKIRHRGLQY 1179
Query: 181 DEGTSKPIDSLAKFL 225
+ T KPI+SL ++L
Sbjct: 1180 SDST-KPINSLGRYL 1193
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 82.0 bits (201), Expect = 7e-14
Identities = 42/75 (56%), Positives = 56/75 (74%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YERKASAWYQVTY+P + ++E ++P+A VMLSFAWI ADYLARIK+R G +
Sbjct: 1121 MYERKASAWYQVTYNPHWVARSLELQLPDA-ISSTVMLSFAWIAADYLARIKIRHRGLQY 1179
Query: 181 DEGTSKPIDSLAKFL 225
+ T KPI+SL ++L
Sbjct: 1180 SDST-KPINSLGRYL 1193
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 80.5 bits (197), Expect = 2e-13
Identities = 41/75 (54%), Positives = 55/75 (73%)
Frame = +1
Query: 1 IYERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKN 180
+YERKASAWYQVTY+P + ++E ++P+A VMLSFAWI ADYLARI +R G +
Sbjct: 1121 MYERKASAWYQVTYNPHWVARSLELQLPDA-VSSTVMLSFAWIAADYLARINIRHRGLQY 1179
Query: 181 DEGTSKPIDSLAKFL 225
+ T KPI+SL ++L
Sbjct: 1180 SDST-KPINSLGRYL 1193
>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 80.1 bits (196), Expect = 3e-13
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = +1
Query: 7 ERKASAWYQVTYHPERLKSAMETRVPEAEAHHKVMLSFAWIPADYLARIKVRRIGKKNDE 186
E+KASAWYQVTYHP+ +K + + P+ VMLSFAWI ADYLARIK++ G ++ +
Sbjct: 1121 EKKASAWYQVTYHPKWVKQSPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHID 1180
Query: 187 GTSKPIDSLAKFLSLRI 237
T KPI+SL ++L+ RI
Sbjct: 1181 ST-KPINSLKRYLADRI 1196