BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00008235
         (2366 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   925   0.0  
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              911   0.0  
gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [...   900   0.0  
gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus pe...   883   0.0  
gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus no...   881   0.0  
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   879   0.0  
gb|EOY11113.1| Pseudouridine synthase family protein, putative i...   874   0.0  
ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Popu...   873   0.0  
ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synt...   869   0.0  
ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synt...   866   0.0  
ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synt...   865   0.0  
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   858   0.0  
ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synt...   857   0.0  
ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synt...   856   0.0  
ref|XP_006408145.1| hypothetical protein EUTSA_v10022286mg, part...   853   0.0  
ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata...   851   0.0  
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   848   0.0  
ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Caps...   842   0.0  
ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citr...   840   0.0  
ref|XP_004494684.1| PREDICTED: multisubstrate pseudouridine synt...   833   0.0  

>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  925 bits (2390), Expect = 0.0
 Identities = 472/691 (68%), Positives = 541/691 (78%), Gaps = 39/691 (5%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKREL 337
            + +EE DVGI  YIS+LPGFRGILKQRY DFIVNEVD DGNVVHLTS+D PPE ++K E 
Sbjct: 2    KHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNET 61

Query: 338  KLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHRTA 517
            K+ +Q +K Y SEIE FRSL GDSD   LK  I+++ SG ED  S  VLS SSDKSHRTA
Sbjct: 62   KISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRTA 121

Query: 518  VHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRGSD 697
            VHNFFKE + FLVTDT+DGPD SSKCIRVRL+SGG+ + G+ SRKRKDR  KPFDSRGSD
Sbjct: 122  VHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGSD 181

Query: 698  DWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVFKI 877
            +W EH+GKFLRFHLYKENKDTQEA+ LIGKMLGIQPRSFGF+GTKDKR+V+TQRVTVFK 
Sbjct: 182  NWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ 241

Query: 878  RARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSDLG 1057
             A RLA+LNERL GIKVGDF + ++GLVLGQLLGNRFTITLRGVVA+SEETIKA+   LG
Sbjct: 242  HANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADALG 301

Query: 1058 KYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYKET 1237
            + GFINYFGLQRFGSG+VPTH IG+ALL+GEW+TAV++ILDPR+GERD I+K RE+YKE+
Sbjct: 302  RLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGERDAIRKAREYYKES 361

Query: 1238 NDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHAAS 1417
            +D++GTLRQ P ++VAERAILQCLKK PGNYLQALKA+PRT+RMMYVHSYQSYLWNHAAS
Sbjct: 362  DDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAAS 421

Query: 1418 IRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSEVDLPG 1597
            +RVQ YG ++VVLGDLVY K D + + +  V  SE +DD   D  + SH DE+SE DLP 
Sbjct: 422  MRVQNYGTKQVVLGDLVYCKGDNA-EKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 480

Query: 1598 DRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLTESKH 1777
            +R  PVKA+D EDLL GNYT +D+VLPLPGSRA YP NDIA +YHD AKKD ISLTES H
Sbjct: 481  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISLTESAH 540

Query: 1778 DVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKP--------- 1930
             VKEFSIT+MTGG+RRVFQKPIDFEWE+L YT+GN PLAETD DKIT SKP         
Sbjct: 541  SVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITKSKPSNIIGGEDS 600

Query: 1931 -------------VESSELQPEDKASDTRESPD-----------------AQETQTALKL 2020
                          +S   +     S     P+                 A E Q ALKL
Sbjct: 601  RNGNEKENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGLPQVEPQFESGAPEAQRALKL 660

Query: 2021 CFTLPASCYATMAIRELLKTSTSVAFHKALN 2113
             FTLPASCYATMAIRELLKTSTSVAF K LN
Sbjct: 661  SFTLPASCYATMAIRELLKTSTSVAFQKTLN 691


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  911 bits (2354), Expect = 0.0
 Identities = 468/691 (67%), Positives = 538/691 (77%), Gaps = 39/691 (5%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKREL 337
            + +EE DVGI  YIS+LPGFRGILKQRY DFIVNEVD DGNVVHLTS+D PPE ++K E 
Sbjct: 2    KHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNET 61

Query: 338  KLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHRTA 517
            K+ +Q +K Y SEIE FRSL GDSD   LK  I+++ SG ED  S  VLS SSDKSHRTA
Sbjct: 62   KISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRTA 121

Query: 518  VHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRGSD 697
            VHNFFKE + FLVTDT+DGPD SSKCIRVRL+SGG+ + G+ SRKRKDR  KPFDSRGSD
Sbjct: 122  VHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGSD 181

Query: 698  DWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVFKI 877
            +W EH+GKFLRFHLYKENKDTQEA+ LIGKMLGIQPRSFGF+GTKDKR+V+TQRVTVFK 
Sbjct: 182  NWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ 241

Query: 878  RARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSDLG 1057
             A RLA+LNERL GIKVGDF + ++GLVLGQLLGNRFTITLRGVVA+SEETIKA+   LG
Sbjct: 242  HANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADALG 301

Query: 1058 KYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYKET 1237
            + GFINYFGLQRFGSG+VPTH IG+ALL+GEW+TAV++ILDPR+G+   + K RE+YKE+
Sbjct: 302  RLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGD-ILLLKAREYYKES 360

Query: 1238 NDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHAAS 1417
            +D++GTLRQ P ++VAERAILQCLKK PGNYLQALKA+PRT+RMMYVHSYQSYLWNHAAS
Sbjct: 361  DDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAAS 420

Query: 1418 IRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSEVDLPG 1597
            +RVQ YG ++VVLGDLVY K D + + +  V  SE +DD   D  + SH DE+SE DLP 
Sbjct: 421  MRVQNYGTKQVVLGDLVYCKGDNA-EKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 479

Query: 1598 DRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLTESKH 1777
            +R  PVKA+D EDLL GNYT +D+VLPLPGSRA YP NDIA +YHD AKKD ISLTES H
Sbjct: 480  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISLTESAH 539

Query: 1778 DVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKP--------- 1930
             VKEFSIT+MTGG+RRVFQKPIDFEWE+L YT+GN PLAETD DKIT SKP         
Sbjct: 540  SVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITKSKPSNIIGGEDS 599

Query: 1931 -------------VESSELQPEDKASDTRESPD-----------------AQETQTALKL 2020
                          +S   +     S     P+                 A E Q ALKL
Sbjct: 600  RNGNEKENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGLPQVEPQFESGAPEAQRALKL 659

Query: 2021 CFTLPASCYATMAIRELLKTSTSVAFHKALN 2113
             FTLPASCYATMAIRELLKTSTSVAF K LN
Sbjct: 660  SFTLPASCYATMAIRELLKTSTSVAFQKTLN 690


>gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
          Length = 732

 Score =  900 bits (2325), Expect = 0.0
 Identities = 461/693 (66%), Positives = 536/693 (77%), Gaps = 42/693 (6%)
 Frame = +2

Query: 161  SIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKRELK 340
            +I E DVGI C+IS LPGFRGILKQRYSDFIVNEVD +GNVVHLTS+D PPE VQ+ E K
Sbjct: 45   TITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEAVQEGETK 104

Query: 341  LPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHRTAV 520
             P+Q +K Y SEI  FRSLAGD+DA +L+ FI ++ SGSE+     VLSP SDKSHRTA+
Sbjct: 105  TPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVLSPDSDKSHRTAM 164

Query: 521  HNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRGSDD 700
            HNFFKE + FLVTDTVDGPD SSKCIRVRL+SG N +KG+ S+KRK+RG KP+DSRGS  
Sbjct: 165  HNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNN-NKGRNSKKRKERGDKPYDSRGSSH 223

Query: 701  WPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVFKIR 880
            WPEHLGKFLRFHLYKENKDTQEAL LIGKMLGIQPRSFGF+GTKDKR+V+TQRVTVFK  
Sbjct: 224  WPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQH 283

Query: 881  ARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSDLGK 1060
            A RLA+LNERL GIKVGDF Y KD  +LGQLLGNRFTI LRG+VA+SEETIKA++  LG+
Sbjct: 284  ASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADSEETIKASVESLGR 343

Query: 1061 YGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYKETN 1240
            +GFINYFGLQRFGSG++PTHRIG+ LL+GEW+ A + ILDPR+GERD + K RE+YKET 
Sbjct: 344  HGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGERDFVSKAREYYKETG 403

Query: 1241 DVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHAASI 1420
            D++GTLRQLP ++VAERA+LQCLKK PGNYLQALKA+PRT+RMMYVHSYQSYLWNHAAS+
Sbjct: 404  DIEGTLRQLPRHLVAERAMLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASM 463

Query: 1421 RVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSEVDLPGD 1600
            RV+KYG+ +VVLGDLVY K  G+      V  SE ED+   D  + S  DE+S  DLP  
Sbjct: 464  RVEKYGSNEVVLGDLVYCK--GNDAEKVKVVPSEHEDNNFEDAYDCSQLDEISGTDLPEG 521

Query: 1601 RCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLTESKHD 1780
            +   VKAI   D+  GNYT ED+VLP+PGSR  YP+NDIA++YHD+AKKD ISLTES H+
Sbjct: 522  KNNLVKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHDMAKKDGISLTESVHN 581

Query: 1781 VKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKPVESSELQPED 1960
            +KEFSITSMTG YRRVFQKPIDFEWE+L YTDG+  L+ETD+DKI  +KPV    L  E+
Sbjct: 582  IKEFSITSMTGSYRRVFQKPIDFEWELLSYTDGSIALSETDLDKIAKTKPVN---LVKEE 638

Query: 1961 KASDTRESPDAQE------------------------------------------TQTAL 2014
            K +D  E  D+ +                                          TQ AL
Sbjct: 639  KPTDGTEGQDSSDHMEHIESFEDDKKFSTGNVEVEGSREAEPPQIHSLPESNSLGTQKAL 698

Query: 2015 KLCFTLPASCYATMAIRELLKTSTSVAFHKALN 2113
            KL FTLPASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 699  KLAFTLPASCYATMAIRELLKTSTSVAFHKTLN 731


>gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus persica]
          Length = 691

 Score =  883 bits (2281), Expect = 0.0
 Identities = 454/679 (66%), Positives = 534/679 (78%), Gaps = 34/679 (5%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKREL 337
            ++ EEPDVGIFCYIS+LPGFRGILKQRYSDF+VNEVD + NVVHLT++D P E V++ E 
Sbjct: 2    KTTEEPDVGIFCYISQLPGFRGILKQRYSDFMVNEVDTEENVVHLTNLDAPAETVKEIET 61

Query: 338  KLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHRTA 517
            K  +   K YT+EIESFRSL    DA +L+  I ++NSGSED     VLSP  DKSHRTA
Sbjct: 62   KTHDATSKDYTTEIESFRSLVDPDDAERLEAIINQINSGSEDSILPIVLSPDYDKSHRTA 121

Query: 518  VHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRGSD 697
            VHNFFKE   FLVTDTVDGPD SSKCIRVR++SGG  S+G+ SRKRK+RG KPFDSRGSD
Sbjct: 122  VHNFFKENFKFLVTDTVDGPDASSKCIRVRINSGGQNSRGRNSRKRKERGDKPFDSRGSD 181

Query: 698  DWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVFKI 877
            DW E++GKFLRFHLYKENKDTQEAL +I KMLGIQPRSFGF+GTKDKRAVTTQRVTVFK 
Sbjct: 182  DWSENVGKFLRFHLYKENKDTQEALGIIAKMLGIQPRSFGFAGTKDKRAVTTQRVTVFKQ 241

Query: 878  RARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSDLG 1057
             A RLA+LN+RL GIKVGDF Y K+GLVLGQLLGNRFTITLRGVVA+SE+TIKA++  LG
Sbjct: 242  LASRLAALNDRLIGIKVGDFCYVKEGLVLGQLLGNRFTITLRGVVADSEDTIKASVIALG 301

Query: 1058 KYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKI-----RE 1222
            K GFINYFGLQRFGSG+VPTH IG+ LL+GEWK+ V++ LDPR+G   DI  +     RE
Sbjct: 302  KQGFINYFGLQRFGSGSVPTHLIGATLLRGEWKSTVSLFLDPREG---DILLMLLGIARE 358

Query: 1223 HYKETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLW 1402
            +YKETND++GTLRQLP ++V+E+AILQCLKK PGNYLQALKA+PRT+RMMYVHSYQSYLW
Sbjct: 359  YYKETNDIEGTLRQLPRHLVSEKAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLW 418

Query: 1403 NHAASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSE 1582
            NHAAS+RVQKYG ++VVLGDLVY K + + + +  V +S+C D+   D ++    D++S 
Sbjct: 419  NHAASMRVQKYGTDRVVLGDLVYCKGNET-EKVSEVVSSKCVDENGNDTLDPIDLDDISG 477

Query: 1583 VDLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISL 1762
             +LP +R   VKA+  ED+L GNYT +D+VLP+PGSR  +P NDIA ++HDLAKKD ISL
Sbjct: 478  TNLPEERLNLVKAVTAEDILSGNYTIDDVVLPMPGSRVIFPENDIAHVFHDLAKKDAISL 537

Query: 1763 TESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKPVESS 1942
            TES H+VKEFSITSMTG YRRVFQKP+DFEWEILKY DGNKPL +TD DKI  +KP   +
Sbjct: 538  TESVHNVKEFSITSMTGSYRRVFQKPMDFEWEILKYIDGNKPLVDTDFDKIAKTKPSSLN 597

Query: 1943 E-------------------LQPEDKASDTR--ESPDA--------QETQTALKLCFTLP 2035
            E                   LQ +D  +  +  E P A        QETQTALKL FTLP
Sbjct: 598  EDGRLHDKTKQSECLDNDIGLQTDDNGAKAKGEELPQAESLCDTNPQETQTALKLSFTLP 657

Query: 2036 ASCYATMAIRELLKTSTSV 2092
            ASCYATMAIRELLKTSTSV
Sbjct: 658  ASCYATMAIRELLKTSTSV 676


>gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus notabilis]
          Length = 784

 Score =  881 bits (2276), Expect = 0.0
 Identities = 453/682 (66%), Positives = 535/682 (78%), Gaps = 35/682 (5%)
 Frame = +2

Query: 152  AARSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKR 331
            A ++++E DVGIFCYIS LPGFRGILKQRYSDFIVNEVD DGNVVHLTS+D PPE  ++ 
Sbjct: 59   AMKTLDESDVGIFCYISNLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPETREET 118

Query: 332  ELKLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHR 511
              +  +   KSYTSEIESFR LAGDSDA  L+  I ++NSG  +  S  VLSPSSDKSHR
Sbjct: 119  RTETIDAGTKSYTSEIESFRCLAGDSDAESLEALINQINSGGGEEVSPIVLSPSSDKSHR 178

Query: 512  TAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRG 691
            T +HNFFK+   FLVTDTVDGPD SSKCIRVRL+SG + + G+ S+KRK+RG KPFD RG
Sbjct: 179  TEIHNFFKKNFKFLVTDTVDGPDASSKCIRVRLNSGRHNNHGRNSKKRKERGDKPFDRRG 238

Query: 692  SDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVF 871
            SDDWPEH+GKFLRFHLYKENKD+QEAL LIGKMLGIQPRSFGF+GTKDKR+V+TQRVTVF
Sbjct: 239  SDDWPEHVGKFLRFHLYKENKDSQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVF 298

Query: 872  KIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSD 1051
            K RA RLA+LN+RL GI+VGDF Y K+ LVLGQL GNRFT+TLRGVVA+SEETIKA+ S 
Sbjct: 299  KQRASRLAALNDRLIGIQVGDFCYVKEELVLGQLSGNRFTVTLRGVVADSEETIKASASA 358

Query: 1052 LGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGE--RDDIQKIREH 1225
            LG+ GFINYFGLQRFGSG+VPT+ IG+ L +GEWK AV+MILDPR+G+   D I K RE+
Sbjct: 359  LGRRGFINYFGLQRFGSGSVPTYLIGAMLFRGEWKDAVHMILDPREGDILLDVITKAREY 418

Query: 1226 YKETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWN 1405
            YKETND+DGTLRQLP ++VAE AILQCLKK PGNYLQALKA+PRT+RMMYVHSYQSYLWN
Sbjct: 419  YKETNDIDGTLRQLPRHLVAENAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWN 478

Query: 1406 HAASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSH-ADELSE 1582
            HAAS RVQKYG ++VV+GDLV+ KE  + + + G  +++C+D+ + + + GSH  DE+S 
Sbjct: 479  HAASTRVQKYGTDQVVVGDLVFCKEH-NIEKVKGTASADCKDEDS-NAIFGSHDIDEVSG 536

Query: 1583 VDLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISL 1762
             +LP +R  PVK +  ED+L GN+  +D+VLPLPGSR   P NDIA +YHDLAKKD ISL
Sbjct: 537  AELPEERNNPVKVVAAEDILAGNFAIDDVVLPLPGSRVILPTNDIAQVYHDLAKKDAISL 596

Query: 1763 TESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKPVESS 1942
            TES H+VKEFSITSMTG YRRVFQKP+D+EWE+L YT+G  PLAETD+D I  SKP   +
Sbjct: 597  TESAHNVKEFSITSMTGSYRRVFQKPVDYEWELLTYTNGTIPLAETDLDIIAKSKPAHVA 656

Query: 1943 E----------------------LQPED-KASDTRES---------PDAQETQTALKLCF 2026
            E                      LQ +D K    RE+          ++QE Q ALKL F
Sbjct: 657  EENEVNGNEESTKRSKRVENEAVLQTDDNKVDGEREAELQAESTCGTNSQEPQMALKLSF 716

Query: 2027 TLPASCYATMAIRELLKTSTSV 2092
            TLPASCYATMAIRELLKTSTSV
Sbjct: 717  TLPASCYATMAIRELLKTSTSV 738


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
            gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820
            [Arabidopsis thaliana] gi|61742699|gb|AAX55170.1|
            hypothetical protein At3g04820 [Arabidopsis thaliana]
            gi|332640619|gb|AEE74140.1| pseudouridine synthase
            [Arabidopsis thaliana]
          Length = 715

 Score =  879 bits (2271), Expect = 0.0
 Identities = 446/689 (64%), Positives = 534/689 (77%), Gaps = 31/689 (4%)
 Frame = +2

Query: 140  TNNGAARSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEM 319
            TN    ++++E DVGI C+IS+LPGFRGILKQRY+DFIVNEVD+DGNVVHLTS+D+PPEM
Sbjct: 32   TNFEGMKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDLPPEM 91

Query: 320  VQKRELKLP--EQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPS 493
              K E K    +   ++YTS +ESF+S++  +DA +L+  I ++ SG++      VL PS
Sbjct: 92   AVKEEDKAKSCDNVPQNYTSAVESFKSISSVTDAERLEILINQVTSGTDGEVLPVVLDPS 151

Query: 494  SDKSHRTAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGK 673
            SDKS RTA+HNF KE   FLVTDTVDGPD +SKCIRVR++SG N ++G  S+KRK+RG K
Sbjct: 152  SDKSKRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRKERGDK 211

Query: 674  PFDSRGSDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTT 853
            PFDSRGS+ WPEH+GKFLRFHLYKENKDTQEAL LIGKMLG+QP+SFGFSGTKDKR+V+T
Sbjct: 212  PFDSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVST 271

Query: 854  QRVTVFKIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETI 1033
            QRVTVFK +A +LA+LN+RLFGIKVGDF   K+GL+LGQL+GNRFTITLRGVVA+SEETI
Sbjct: 272  QRVTVFKQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETI 331

Query: 1034 KAALSDLGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQK 1213
            K +   LGK GFINYFGLQRFGSG+VPTH +G+ALLKGEWK AV+MILDPR+ ER  +  
Sbjct: 332  KQSAESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDAVDMILDPRETERHVVND 391

Query: 1214 IREHYKETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQS 1393
             RE+YKET D+DGTLRQLP  +VAERAILQCLKK PGNYLQALK +PRT+RMMYVHSYQS
Sbjct: 392  AREYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQS 451

Query: 1394 YLWNHAASIRVQKYGAEKVVLGDLVYSKEDGSH---DNIPGVHTSECEDDATIDGVNGSH 1564
            YLWN+AAS+RV+ YG  +VVLGDLV +K D +    D++   H    E+    D V    
Sbjct: 452  YLWNNAASLRVKNYGTSQVVLGDLVSTKVDAAKRMVDSLTSEHNESSEEALDCDQV---- 507

Query: 1565 ADELSEVDLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAK 1744
             D+ + VDLP +R   VK +  EDL  G Y+  DIVLPLPGSR  YP NDIA+IYHDLAK
Sbjct: 508  -DDTAVVDLPAERSDLVKVVSIEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAK 566

Query: 1745 KDDISLTESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITIS 1924
            KD ISLTES H VKEFSITSMTGGYRRVFQKPIDFEWE+L YTD NKPLAETD+D+I ++
Sbjct: 567  KDGISLTESIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRIPMN 626

Query: 1925 KPVE----SSELQPEDKASDTRE----------------------SPDAQETQTALKLCF 2026
            KPVE    + E++ E   SDT                        +PD+++TQ ALK+  
Sbjct: 627  KPVEKVGSTEEIEDESMKSDTNPHDSGETNLKDQTDSNEAEKDTGNPDSEQTQMALKMAL 686

Query: 2027 TLPASCYATMAIRELLKTSTSVAFHKALN 2113
            TLP+SCYATMAIRELLKTSTSVA+HK LN
Sbjct: 687  TLPSSCYATMAIRELLKTSTSVAYHKTLN 715


>gb|EOY11113.1| Pseudouridine synthase family protein, putative isoform 1 [Theobroma
            cacao]
          Length = 763

 Score =  874 bits (2257), Expect = 0.0
 Identities = 458/724 (63%), Positives = 536/724 (74%), Gaps = 73/724 (10%)
 Frame = +2

Query: 161  SIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEM------- 319
            +I E DVGI C+IS LPGFRGILKQRYSDFIVNEVD +GNVVHLTS+D PPE+       
Sbjct: 45   TITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEVMIDVFSL 104

Query: 320  ------VQKRELKLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFV 481
                  VQ+ E K P+Q +K Y SEI  FRSLAGD+DA +L+ FI ++ SGSE+     V
Sbjct: 105  NKFTQAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIV 164

Query: 482  LSPSSDKSHRTAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKD 661
            LSP SDKSHRTA+HNFFKE + FLVTDTVDGPD SSKCIRVRL+SG N +KG+ S+KRK+
Sbjct: 165  LSPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNN-NKGRNSKKRKE 223

Query: 662  RGGKPFDSRGSDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKR 841
            RG KP+DSRGS  WPEHLGKFLRFHLYKENKDTQEAL LIGKMLGIQPRSFGF+GTKDKR
Sbjct: 224  RGDKPYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKR 283

Query: 842  AVTTQRVTVFKIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAES 1021
            +V+TQRVTVFK  A RLA+LNERL GIKVGDF Y KD  +LGQLLGNRFTI LRG+VA+S
Sbjct: 284  SVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADS 343

Query: 1022 EETIKAALSDLGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERD 1201
            EETIKA++  LG++GFINYFGLQRFGSG++PTHRIG+ LL+GEW+ A + ILDPR+G+  
Sbjct: 344  EETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGDIL 403

Query: 1202 DI------------------QKIREHYKETNDVDGTLRQLPHNMVAERAILQCLKKSPGN 1327
             +                  Q+ RE+YKET D++GTLRQLP ++VAERA+LQCLKK PGN
Sbjct: 404  SLTFFFPFLLGKALFRCLTTQRAREYYKETGDIEGTLRQLPRHLVAERAMLQCLKKCPGN 463

Query: 1328 YLQALKAVPRTMRMMYVHSYQSYLWNHAASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPG 1507
            YLQALKA+PRT+RMMYVHSYQSYLWNHAAS+RV+KYG+ +VVLGDLVY K  G+      
Sbjct: 464  YLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGSNEVVLGDLVYCK--GNDAEKVK 521

Query: 1508 VHTSECEDDATIDGVNGSHADELSEVDLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPG 1687
            V  SE ED+   D  + S  DE+S  DLP  +   VKAI   D+  GNYT ED+VLP+PG
Sbjct: 522  VVPSEHEDNNFEDAYDCSQLDEISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLPMPG 581

Query: 1688 SRATYPMNDIADIYHDLAKKDDISLTESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILK 1867
            SR  YP+NDIA++YHD+AKKD ISLTES H++KEFSITSMTG YRRVFQKPIDFEWE+L 
Sbjct: 582  SRIIYPVNDIANVYHDMAKKDGISLTESVHNIKEFSITSMTGSYRRVFQKPIDFEWELLS 641

Query: 1868 YTDGNKPLAETDMDKITISKPVESSELQPEDKASDTRESPDAQE---------------- 1999
            YTDG+  L+ETD+DKI  +KPV    L  E+K +D  E  D+ +                
Sbjct: 642  YTDGSIALSETDLDKIAKTKPVN---LVKEEKPTDGTEGQDSSDHMEHIESFEDDKKFST 698

Query: 2000 --------------------------TQTALKLCFTLPASCYATMAIRELLKTSTSVAFH 2101
                                      TQ ALKL FTLPASCYATMAIRELLKTSTSVAFH
Sbjct: 699  GNVEVEGSREAEPPQIHSLPESNSLGTQKALKLAFTLPASCYATMAIRELLKTSTSVAFH 758

Query: 2102 KALN 2113
            K LN
Sbjct: 759  KTLN 762


>ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Populus trichocarpa]
            gi|550338143|gb|ERP60572.1| hypothetical protein
            POPTR_0005s05300g [Populus trichocarpa]
          Length = 752

 Score =  873 bits (2255), Expect = 0.0
 Identities = 453/699 (64%), Positives = 541/699 (77%), Gaps = 48/699 (6%)
 Frame = +2

Query: 161  SIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKRE-- 334
            S+EE DVGI CYIS+LPGFRGILKQRY+DFIVNEVD DGNVVHLT ++ PP+MV++ +  
Sbjct: 54   SMEESDVGILCYISQLPGFRGILKQRYADFIVNEVDTDGNVVHLTCLEPPPQMVEETKEC 113

Query: 335  -LKLPEQ---HDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNS--GSEDIASSFVLSPSS 496
              K+ ++     KSY +EIE FRSLAGDSDA +L+  I +++S  GSED     VLSP S
Sbjct: 114  GAKVSDEKMSESKSYEAEIELFRSLAGDSDAEKLESLISQVDSCTGSEDSVPHIVLSPDS 173

Query: 497  DKSHRTAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKP 676
            DK+HRTAVHNFFK+   FLVTDT DGPD SSKCIRVRLDSGG+++ G+ S+KRK+RG KP
Sbjct: 174  DKTHRTAVHNFFKQNFKFLVTDTTDGPDASSKCIRVRLDSGGHKNNGRNSKKRKERGEKP 233

Query: 677  FDSRGSDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQ 856
            FDSRGS +WPEHLGKFLRFHLYKENKDTQEAL +IGKMLGIQ +SFGF+GTKDKRAV+TQ
Sbjct: 234  FDSRGSSNWPEHLGKFLRFHLYKENKDTQEALGIIGKMLGIQSKSFGFAGTKDKRAVSTQ 293

Query: 857  RVTVFKIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIK 1036
            RVTVFK +A RLA+LN+RL GIKVGDF + K+GL+LG+LLGNRFT+TLRGV+A+SE+TIK
Sbjct: 294  RVTVFKQQASRLAALNDRLIGIKVGDFCHVKEGLLLGRLLGNRFTVTLRGVIADSEDTIK 353

Query: 1037 AALSDLGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGE-----RD 1201
            AA   LG++GFINYFGLQRFG+G+VPTH IG+ALL+GEWKTAV+MILDPR+G+       
Sbjct: 354  AAADSLGRHGFINYFGLQRFGTGSVPTHLIGAALLRGEWKTAVSMILDPREGDILLLFPY 413

Query: 1202 DIQKIREHYKETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVH 1381
             I+K RE+YKE+ND++GTLRQLP ++VAERA+LQCLKK PG+YLQA+KA+PRT+RMMYVH
Sbjct: 414  VIRKAREYYKESNDIEGTLRQLPRHLVAERAVLQCLKKCPGDYLQAMKAIPRTLRMMYVH 473

Query: 1382 SYQSYLWNHAASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGS 1561
             YQSYLWNHAAS RVQKYG ++V+LGDLVY K D S     GV+ SEC DD   D  + S
Sbjct: 474  GYQSYLWNHAASERVQKYGFDQVLLGDLVYCKGDDSEKETVGVN-SECNDDNCDDTYDCS 532

Query: 1562 HADELSEVDLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLA 1741
            H DE S  DL   +   VK +  ED+  GNYT +D+VLP+PGSR  +P N+IA +YHDLA
Sbjct: 533  HLDETSGTDLLERKNTLVKVVTVEDMSTGNYTVDDVVLPMPGSRVIFPTNEIAKVYHDLA 592

Query: 1742 KKDDISLTESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITI 1921
            KKD I+LTES H VKEFSITSMTG YRRVFQKP+DFEWE+L Y D NKPLAETD+DKI+ 
Sbjct: 593  KKDAINLTESVHRVKEFSITSMTGSYRRVFQKPLDFEWELLTYNDSNKPLAETDLDKISK 652

Query: 1922 S------------KPVESSELQPEDK-----------ASDTRESPDA------------Q 1996
            +            K  E ++L    K           +SDT E  +             Q
Sbjct: 653  TGSTNIIKQEEQGKGDEDNDLSDCTKLPVCSRNSIALSSDTNEESEREVESEQVSGSNWQ 712

Query: 1997 ETQTALKLCFTLPASCYATMAIRELLKTSTSVAFHKALN 2113
            ETQ ALKL  TLPASCYATMAIRELLKTSTSVA+HK LN
Sbjct: 713  ETQMALKLSLTLPASCYATMAIRELLKTSTSVAYHKTLN 751


>ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 693

 Score =  869 bits (2245), Expect = 0.0
 Identities = 438/691 (63%), Positives = 528/691 (76%), Gaps = 42/691 (6%)
 Frame = +2

Query: 167  EEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKRELKLP 346
            +E +VGIFCYIS LPGFRGILKQRYSDF+VNEVD++GNVVHLT+++ PPE+V++   K  
Sbjct: 4    QESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAKTE 63

Query: 347  EQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHRTAVHN 526
            +   K Y++EIE FR LA   D  +L+ FI ++NSGSED     VLSP  DK HRTAVHN
Sbjct: 64   DAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAVHN 123

Query: 527  FFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRGSDDWP 706
            FFKE + FLVTD VDGPD SSKCIRVRL+SGG   +G+ S+KRK+RG KPFDSRG DDW 
Sbjct: 124  FFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDDWS 183

Query: 707  EHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVFKIRAR 886
            EH+GKFLRFHL+KENKDTQEAL +IGKMLGIQPR+FGF+GTKDKRAVT QRVTVFK  A 
Sbjct: 184  EHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQFAS 243

Query: 887  RLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSDLGKYG 1066
            RLA+LN+RL GIKVGDF Y K+GL LGQLLGNRFTITLRGVVA+SE+ I+A+ + LGK G
Sbjct: 244  RLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGKQG 303

Query: 1067 FINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYKETNDV 1246
            F+NYFGLQRFGSG++PTH IG++LL+GEWK+ V+M+L+PR+GERD I + R++YKE+ND+
Sbjct: 304  FVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESNDI 363

Query: 1247 DGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHAASIRV 1426
            DGTLR+LP  +VAERA+LQCLKK PGNY QALKAVPRT+RMMYVHSYQSYLWNHAAS+RV
Sbjct: 364  DGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASMRV 423

Query: 1427 QKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSEC-----EDDATIDGVNGSHADELSEVDL 1591
            QKYG ++VV+GDLVY K   + + + G+ +SEC      D+   D  + +H D++SE ++
Sbjct: 424  QKYGTDRVVVGDLVYCKGHET-EKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETNV 482

Query: 1592 PGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLTES 1771
            P  R   VKA+  ED+  G YT +DIVLPLPGSR  +P NDIA ++HDLAKKD ISLTES
Sbjct: 483  PEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGISLTES 542

Query: 1772 KHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKPVESSELQ 1951
             H+VKEFSIT++TG YRRVFQKP+DFEW+ILKY DGN PL ETD +KI  +KPV  ++  
Sbjct: 543  VHNVKEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVNVNKEY 602

Query: 1952 PEDKASD-------------------------------------TRESPDAQETQTALKL 2020
            P   + D                                     +   P  Q TQ ALKL
Sbjct: 603  PTGVSGDGSLHDRIKQSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQIALKL 662

Query: 2021 CFTLPASCYATMAIRELLKTSTSVAFHKALN 2113
             FTLPASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 663  SFTLPASCYATMAIRELLKTSTSVAFHKTLN 693


>ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            tuberosum]
          Length = 685

 Score =  866 bits (2237), Expect = 0.0
 Identities = 438/689 (63%), Positives = 537/689 (77%), Gaps = 37/689 (5%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKREL 337
            ++++E DVGI CYIS LPGFRGILKQRYSDFIVNEVDLD NVVHLT ++ P E  + +++
Sbjct: 2    KTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLTLLEAPKECSENKDV 61

Query: 338  KLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHRTA 517
             + +Q ++SY +EIESFRSLAG+SDA +LK FI++LNSG++    S VLSPSSDKSHRTA
Sbjct: 62   NISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRTA 121

Query: 518  VHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRGSD 697
            +HNFFKE++ FLVTDT+DG +  SKC+RVRL++  N  +G++SRKRKDR  K +DSRGSD
Sbjct: 122  IHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRSSRKRKDRDDKRYDSRGSD 181

Query: 698  DWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVFKI 877
             WP HLGKFLRFHL+KENKDTQEAL +I KMLG+Q RSFGF+GTKDKRAV+TQRVTVFK 
Sbjct: 182  SWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFKQ 241

Query: 878  RARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSDLG 1057
            +A +LA+LN+RL GIKVGDF + K+GL+LGQL GNRFTITLRGV AESE+ IKA+   LG
Sbjct: 242  QASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVALG 301

Query: 1058 KYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYKET 1237
            K+GFINYFGLQRFGS +VPTH IG+ALL+GEWK AV++ILDPR+GE++ I  +RE+YKE+
Sbjct: 302  KHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNAISTVREYYKES 361

Query: 1238 NDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHAAS 1417
             D+DGTLRQLP  +VAE+AILQCLK+SPGNYLQALKA+PRT+RMMYVHSYQSYLWNHAAS
Sbjct: 362  GDIDGTLRQLPRYLVAEKAILQCLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAAS 421

Query: 1418 IRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSEVDLPG 1597
            +RVQK+G ++VVLGDLVYSKE+     +     +ECED    +  + S+ DE+SE DLP 
Sbjct: 422  MRVQKHGFDQVVLGDLVYSKEEYK---VKESFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 1598 DRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLTESKH 1777
            +R  PVK I+ EDL  G Y  +D++LPLPGSR  YP NDI ++Y DLA+KDDISLTE+ H
Sbjct: 479  ERNIPVKVINEEDLKSGTYAIDDVLLPLPGSRVIYPSNDIGEVYCDLAQKDDISLTETAH 538

Query: 1778 DVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKPVESSELQPE 1957
             +KEFSIT+MTG YRRVFQKP DFEWE+L YTDG  PLAETD D I  S     S+++ E
Sbjct: 539  KIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIANSV---KSKVREE 595

Query: 1958 DKASDTRESP-------------------------------------DAQETQTALKLCF 2026
            D  + ++E P                                     +A+E+Q ALKL F
Sbjct: 596  DPTNGSKELPADSSAISVGGDMLSGKVCEEKINNEAGMQSEKSQSGGNAEESQMALKLSF 655

Query: 2027 TLPASCYATMAIRELLKTSTSVAFHKALN 2113
            TLPASCYATMA+RELLKTSTSVAFHK+LN
Sbjct: 656  TLPASCYATMAVRELLKTSTSVAFHKSLN 684


>ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Citrus sinensis]
          Length = 739

 Score =  865 bits (2236), Expect = 0.0
 Identities = 445/695 (64%), Positives = 531/695 (76%), Gaps = 43/695 (6%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPE--MVQKR 331
            ++++E D GI C+IS LPGFRGILKQRY DFIVNEVD D  VVHLTS+DVPPE   V+  
Sbjct: 46   KTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEHN 105

Query: 332  ELKLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSG-SEDIASSFVLSPSSDKSH 508
            E K  +Q ++SY SEIESFRSLAGDSDA  L+  I ++ SG +ED     VLS +SDKSH
Sbjct: 106  ETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKSH 165

Query: 509  RTAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQ-SKGKASRKRKDRGGKPFDS 685
            RTA+HNFFK+   FLVTDTVDGPD SSKCIRVRL+SGGN  S G+ S+KRK+RG  PFDS
Sbjct: 166  RTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFDS 225

Query: 686  RGSDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVT 865
            RGS++WPE LGKFLRFHLYKENKDTQEAL LI KMLGI PRSFGF+GTKDKR+V+TQRVT
Sbjct: 226  RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 285

Query: 866  VFKIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAAL 1045
            VFK RA +LA+LN+RL GI++GDF Y K+GL+LGQLLGNRFTITLRGVV +SE+ IKA+ 
Sbjct: 286  VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA 345

Query: 1046 SDLGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREH 1225
            + LG+ GFINYFGLQRFGSG+VPTH +G+ LL+GEWK+AV MILDPR+GER++I K RE+
Sbjct: 346  NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGERNEISKAREY 405

Query: 1226 YKETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWN 1405
            YKET+D+DGTLR+LP ++VAERAILQCLKK PGNYLQALKA+PRT+RMMYVHSYQS+LWN
Sbjct: 406  YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 465

Query: 1406 HAASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSEV 1585
            HAAS RVQK+G E VV+GDLV+ K D +   + G    E E +++ D  + SH DE+ E 
Sbjct: 466  HAASARVQKHGTEHVVVGDLVFCKGDDTEKEL-GCVNPEFEYESSNDADDSSHLDEVPET 524

Query: 1586 DLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLT 1765
            D P  R   VK +  ED+  G YT +D+VLPLPGSR  YPMND+A++YH LA+KD I+LT
Sbjct: 525  DHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 584

Query: 1766 ESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKI---------- 1915
            ES H+VKEFSITSMTG YRRVFQKP+DFEWE+L Y DGNKPLAETD+DKI          
Sbjct: 585  ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLANIVK 644

Query: 1916 ---------------------TISKPVESSELQPEDKASDTRESP--------DAQETQT 2008
                                 ++SK ++ S    E   +   + P        D+Q  Q 
Sbjct: 645  EEEAVCGNKKKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQM 704

Query: 2009 ALKLCFTLPASCYATMAIRELLKTSTSVAFHKALN 2113
            ALKL  TLP+SCYATMAIRELLKTSTSVAFHK LN
Sbjct: 705  ALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 739


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  858 bits (2218), Expect = 0.0
 Identities = 451/704 (64%), Positives = 533/704 (75%), Gaps = 53/704 (7%)
 Frame = +2

Query: 161  SIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQ---KR 331
            +IEE DVGI CYISK+PGFRGILKQRYSDFIVNEVD +GNVVHLTS+ VP E+V+   +R
Sbjct: 51   TIEESDVGISCYISKVPGFRGILKQRYSDFIVNEVDNNGNVVHLTSLHVPREIVEVAEER 110

Query: 332  ELKLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDI-ASSFVLSPSSDKSH 508
            E ++  Q  K+Y +EIESFR LAGD+D  +L+ FI ++ S    I  S  +LSP SDK+H
Sbjct: 111  EEEITNQVGKNYAAEIESFRELAGDADTQRLEAFINQVISEDNCINISPILLSPDSDKAH 170

Query: 509  RTAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKG-KASRKRKDRGGKPFDS 685
            RTA HNFFKEK+ FLVTDTVDGPD SSKCIRVRL+S GN ++G + S+KRKDR  KPFDS
Sbjct: 171  RTATHNFFKEKLKFLVTDTVDGPDASSKCIRVRLNSRGNINEGNRNSKKRKDRNDKPFDS 230

Query: 686  RGSDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVT 865
            RGSD WPEHLGKFLRFHLYKENKDTQEA+ LIGKMLGIQPRSFGF+GTKDKR+V+TQRVT
Sbjct: 231  RGSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVT 290

Query: 866  VFKIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAAL 1045
            VFK  A RLA+LN+RL GIKVGDF Y  +GL+LGQLLGNRFT+TLRGVVA+SE+TIK + 
Sbjct: 291  VFKQHASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVTLRGVVADSEDTIKGSA 350

Query: 1046 SDLGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGE-------RDD 1204
              LG++GFINYFGLQRFGSG+VPTH IG+ALL+GEWK AV+MILDPR+G+          
Sbjct: 351  DSLGRHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMILDPREGDILLLVICFMW 410

Query: 1205 IQKIREHYKETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHS 1384
            ++  RE+YKE++D+DGTLRQLP  + AERA+LQCLKK PGNYLQALKA+PRT+RMMYVHS
Sbjct: 411  MRMAREYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQALKAIPRTLRMMYVHS 470

Query: 1385 YQSYLWNHAASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSH 1564
            YQSYLWNHAAS+RVQKYG ++VV+GDLVY K D +   I G   S CEDD   D    S+
Sbjct: 471  YQSYLWNHAASMRVQKYGTDQVVVGDLVYCKGDDTEREI-GSANSACEDDDCEDMYGCSN 529

Query: 1565 ADELSEVDLPGDRCQPVK---AIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHD 1735
             DE S  DL   +   VK   A++ EDL  GNYT  D++LP+PGSR +YP NDIA +YHD
Sbjct: 530  LDETSGTDLSERKDTLVKVEQAVNAEDLSTGNYTINDVILPMPGSRVSYPTNDIAKVYHD 589

Query: 1736 LAKKDDISLTESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKI 1915
            LA+KD I+L ES H  KEFSITSMTG YRRVFQKP+DFEWEIL YTDG  PLAETDM+K+
Sbjct: 590  LAEKDAINLAESVHSAKEFSITSMTGSYRRVFQKPMDFEWEILSYTDGTTPLAETDMEKL 649

Query: 1916 TISKPVESSELQPEDKASDTRE-------------------------------------- 1981
              +K +E ++ + E K +DT+                                       
Sbjct: 650  AKAKSIELNK-EEETKKNDTKSPSDCMRQPMSSGNDLHLSAEYNREGEREVEVAKVEPLY 708

Query: 1982 SPDAQETQTALKLCFTLPASCYATMAIRELLKTSTSVAFHKALN 2113
             P+ +  QTALKL FTLPASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 709  GPNTRGAQTALKLTFTLPASCYATMAIRELLKTSTSVAFHKTLN 752


>ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            lycopersicum]
          Length = 685

 Score =  857 bits (2215), Expect = 0.0
 Identities = 434/686 (63%), Positives = 531/686 (77%), Gaps = 34/686 (4%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKREL 337
            ++++E DVGI CYIS LPGFRGILKQRYSDFIVNEVDLD NVVHL S++ P E  + +++
Sbjct: 2    KTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLNSLEAPKECSENKDV 61

Query: 338  KLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHRTA 517
             + +Q ++SY +EIESFRSLAG+SDA +LK FI++LNSG++    S VLSPSSDKSHRT 
Sbjct: 62   NISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRTE 121

Query: 518  VHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRGSD 697
            +HNFFKE++ FLVTDT+DG +  SKC+RVRL++  N  +G+ SRKRKDR  K +DSRGSD
Sbjct: 122  IHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRYSRKRKDRNDKRYDSRGSD 181

Query: 698  DWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVFKI 877
             WP HLGKFLRFHL+KENKDTQEAL +I KMLG+Q RSFGF+GTKDKRAV+TQRVTVFK 
Sbjct: 182  SWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFKQ 241

Query: 878  RARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSDLG 1057
            +A +LA+LN+RL GIKVGDF + K+GL+LGQL GNRFTITLRGV AESE+ IKA+   LG
Sbjct: 242  QASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVALG 301

Query: 1058 KYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYKET 1237
            K+GFINYFGLQRFGS +VPTH IG+ALL+GEWK AV++ILDPR+GE++ I  +RE+YKE+
Sbjct: 302  KHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNTISTVREYYKES 361

Query: 1238 NDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHAAS 1417
             D+DGTLRQLP  +VAE+AILQ LK+SPGNYLQALKA+PRT+RMMYVHSYQSYLWNHAAS
Sbjct: 362  GDIDGTLRQLPRYLVAEKAILQSLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAAS 421

Query: 1418 IRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSEVDLPG 1597
            +RVQK+G ++VVLGDLVYSKED     +     +ECED    +  + S+ DE+SE DLP 
Sbjct: 422  MRVQKHGFDQVVLGDLVYSKEDYK---VKESFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 1598 DRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLTESKH 1777
            +R  PVK I+ EDL  G YT +D++LPL GSR  YP NDI ++Y DLA+KD ISLTE+ H
Sbjct: 479  ERNIPVKVINEEDLKSGTYTIDDVLLPLSGSRVIYPSNDIGEVYRDLAQKDGISLTETAH 538

Query: 1778 DVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMD--------KITISKPV 1933
             +KEFSIT+MTG YRRVFQKP DFEWE+L YTDG  PLAETD D        K+    P 
Sbjct: 539  KIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKSKVIEEVPS 598

Query: 1934 ESSELQPEDKAS--------------------------DTRESPDAQETQTALKLCFTLP 2035
              S+  P D ++                           ++   +A+E+Q ALKL FTLP
Sbjct: 599  NGSKELPADSSAISVGGDMLSGKVCEETINNEAGMQSEKSQSGGNAEESQMALKLSFTLP 658

Query: 2036 ASCYATMAIRELLKTSTSVAFHKALN 2113
            ASCYATMA+RELLKTSTSVAFHK+LN
Sbjct: 659  ASCYATMAVRELLKTSTSVAFHKSLN 684


>ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 701

 Score =  856 bits (2212), Expect = 0.0
 Identities = 432/684 (63%), Positives = 522/684 (76%), Gaps = 42/684 (6%)
 Frame = +2

Query: 167  EEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKRELKLP 346
            +E +VGIFCYIS LPGFRGILKQRYSDF+VNEVD++GNVVHLT+++ PPE+V++   K  
Sbjct: 4    QESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAKTE 63

Query: 347  EQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHRTAVHN 526
            +   K Y++EIE FR LA   D  +L+ FI ++NSGSED     VLSP  DK HRTAVHN
Sbjct: 64   DAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAVHN 123

Query: 527  FFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRGSDDWP 706
            FFKE + FLVTD VDGPD SSKCIRVRL+SGG   +G+ S+KRK+RG KPFDSRG DDW 
Sbjct: 124  FFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDDWS 183

Query: 707  EHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVFKIRAR 886
            EH+GKFLRFHL+KENKDTQEAL +IGKMLGIQPR+FGF+GTKDKRAVT QRVTVFK  A 
Sbjct: 184  EHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQFAS 243

Query: 887  RLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSDLGKYG 1066
            RLA+LN+RL GIKVGDF Y K+GL LGQLLGNRFTITLRGVVA+SE+ I+A+ + LGK G
Sbjct: 244  RLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGKQG 303

Query: 1067 FINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYKETNDV 1246
            F+NYFGLQRFGSG++PTH IG++LL+GEWK+ V+M+L+PR+GERD I + R++YKE+ND+
Sbjct: 304  FVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESNDI 363

Query: 1247 DGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHAASIRV 1426
            DGTLR+LP  +VAERA+LQCLKK PGNY QALKAVPRT+RMMYVHSYQSYLWNHAAS+RV
Sbjct: 364  DGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASMRV 423

Query: 1427 QKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSEC-----EDDATIDGVNGSHADELSEVDL 1591
            QKYG ++VV+GDLVY K   + + + G+ +SEC      D+   D  + +H D++SE ++
Sbjct: 424  QKYGTDRVVVGDLVYCKGHET-EKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETNV 482

Query: 1592 PGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLTES 1771
            P  R   VKA+  ED+  G YT +DIVLPLPGSR  +P NDIA ++HDLAKKD ISLTES
Sbjct: 483  PEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGISLTES 542

Query: 1772 KHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKPVESSELQ 1951
             H+VKEFSIT++TG YRRVFQKP+DFEW+ILKY DGN PL ETD +KI  +KPV  ++  
Sbjct: 543  VHNVKEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVNVNKEY 602

Query: 1952 PEDKASD-------------------------------------TRESPDAQETQTALKL 2020
            P   + D                                     +   P  Q TQ ALKL
Sbjct: 603  PTGVSGDGSLHDRIKQSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQIALKL 662

Query: 2021 CFTLPASCYATMAIRELLKTSTSV 2092
             FTLPASCYATMAIRELLKTSTSV
Sbjct: 663  SFTLPASCYATMAIRELLKTSTSV 686


>ref|XP_006408145.1| hypothetical protein EUTSA_v10022286mg, partial [Eutrema salsugineum]
            gi|557109291|gb|ESQ49598.1| hypothetical protein
            EUTSA_v10022286mg, partial [Eutrema salsugineum]
          Length = 692

 Score =  853 bits (2204), Expect = 0.0
 Identities = 435/660 (65%), Positives = 526/660 (79%), Gaps = 16/660 (2%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKREL 337
            ++++E DVGI C+IS+LPGFRGILKQRY+DFIVNEVD+DGNVVHLTS+DV PEM +K E 
Sbjct: 40   KTVDESDVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDVSPEMDEKEEE 99

Query: 338  KLPEQHD--KSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHR 511
            K     D  +SY S IESFRS++  +DA +L+  I ++ S ++D  S  V  PSSDKS R
Sbjct: 100  KTKSSDDVPQSYASAIESFRSISSVTDAERLETLINQVTSVTDDEISPVVFDPSSDKSKR 159

Query: 512  TAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRG 691
            TA+HNF KE   FLVTDTVDGPD +SKCIRVR++S  + S+GK S+KRK+RG KPFDSRG
Sbjct: 160  TAIHNFVKENFKFLVTDTVDGPDPTSKCIRVRVNSADHNSRGKRSKKRKERGDKPFDSRG 219

Query: 692  SDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVF 871
            S+ WPEHLGKF++FHLYKENKDTQEAL LIGKMLG+QP+SFGFSGTKDKR+V++QRVTVF
Sbjct: 220  SEHWPEHLGKFVKFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSSQRVTVF 279

Query: 872  KIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSD 1051
            K +A +LA+LN+RLFGIKVGDF + K+GL+LGQL+GNRFTITLRGVVA+SEETIK +   
Sbjct: 280  KQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSAES 339

Query: 1052 LGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYK 1231
            LGK GFINYFGLQRFGSG+VPTH +G+A+LKGEWK AV+MILDPR     +I + RE+YK
Sbjct: 340  LGKDGFINYFGLQRFGSGSVPTHHVGAAVLKGEWKEAVDMILDPR-----EINEAREYYK 394

Query: 1232 ETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHA 1411
            ET D+DGTLRQLP  +VAERAILQCLKK PGNYLQALK +PRT+RMMYVHSYQSYLWN+A
Sbjct: 395  ETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNA 454

Query: 1412 ASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSEVDL 1591
            AS+RVQKYG  +VVLGDLV +K D +   I G  TSE +++   + ++    D+ + VDL
Sbjct: 455  ASLRVQKYGTNQVVLGDLVSTKVDDA-KRIVGSLTSEHKEN-NEEALDCDQLDDTAVVDL 512

Query: 1592 PGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLTES 1771
             G+R   VK +D ED+  G Y+  DIVLPLPGSR  YP NDIA+IYH+LAKKD ISLTES
Sbjct: 513  SGERSDLVKVVDIEDMEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHNLAKKDGISLTES 572

Query: 1772 KHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISK-------- 1927
             H VKEFSITSMTGGYRRVFQKPIDFEWE+L YTD NKPLAETD+D+IT+ K        
Sbjct: 573  IHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRITLEKTRDKVGSA 632

Query: 1928 ----PVESSELQPEDKASDTRE--SPDAQETQTALKLCFTLPASCYATMAIRELLKTSTS 2089
                 ++S    PE   SD ++  +P +++TQ ALK+  TLP+SCYATMAIRELLKTSTS
Sbjct: 633  EEIESMKSDSRPPESCESDLKDTGNPVSEQTQLALKMALTLPSSCYATMAIRELLKTSTS 692


>ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
            gi|297330312|gb|EFH60731.1| pseudouridylate synthase
            [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  851 bits (2199), Expect = 0.0
 Identities = 439/683 (64%), Positives = 521/683 (76%), Gaps = 32/683 (4%)
 Frame = +2

Query: 161  SIEEPDVGIFCYISKLPGFRGILKQR-YSDFIVNEVDLDGNVVHLTSMDVPPEMVQKRE- 334
            +++E DVGI C+IS+LPGFRGILKQR Y+DFIVNEVD+DGNVVHLTS+D+PPEM  K E 
Sbjct: 39   TVDEADVGISCFISQLPGFRGILKQRSYADFIVNEVDIDGNVVHLTSLDLPPEMDVKEED 98

Query: 335  -LKLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHR 511
              K  +   ++YTS IESFRS++  +DA +L+  I ++ SG++D  S  VL PSSDKS R
Sbjct: 99   KTKTSDNVPQNYTSAIESFRSISSVTDAERLETLINQVTSGTDDEISPVVLDPSSDKSKR 158

Query: 512  TAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRG 691
            TA+HNF KE   FLVTDTVDGPD +SKCIRVR++SG + ++G  S+KRK+RG KPFDSRG
Sbjct: 159  TAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPFDSRG 218

Query: 692  SDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVF 871
            S+ WPEH+GKFLRFHLYKENKDTQEAL LIGKMLG+QP+SFGFSGTKDKR+V+TQRVTVF
Sbjct: 219  SEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVF 278

Query: 872  KIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSD 1051
            K +A +LA+LN+RLFGIKVGDF + K+GL+LGQL+GNRFTITLRGVVA+SEETIK +   
Sbjct: 279  KQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSAES 338

Query: 1052 LGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYK 1231
            LGK GFINYFGLQRFGSG+VPTH +G+ALLKGEWK A              +   RE+YK
Sbjct: 339  LGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ECSNAWHVVNDAREYYK 392

Query: 1232 ETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHA 1411
            ET D+DGTLRQLP  +VAERAILQCLKK PGNYLQALK +PRT+RMMYVHSYQSYLWN+A
Sbjct: 393  ETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNA 452

Query: 1412 ASIRVQKYGAEKVVLGDLVYSKEDGSH---DNIPGVHTSECEDDATIDGVNGSHADELSE 1582
            AS+RV KYG  +VVLGDLV +K D      D++   H    E+    D V     D+ + 
Sbjct: 453  ASLRVTKYGTSQVVLGDLVSTKVDAEKRMVDSLTSEHNESSEEALDCDQV-----DDTAV 507

Query: 1583 VDLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISL 1762
            VDLP +R   VK +  EDL  G Y   DIVLPLPGSR  YP NDIA+IYHDLAKKD ISL
Sbjct: 508  VDLPAERSDLVKVVSIEDLEAGTYLTSDIVLPLPGSRVIYPSNDIAEIYHDLAKKDGISL 567

Query: 1763 TESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKPVE-- 1936
            TES H VKEFSITSMTGGYRRVFQKPIDFEWE+L YTD NKPLAETD+D+IT+ KPV+  
Sbjct: 568  TESIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRITVYKPVDKV 627

Query: 1937 --SSELQPEDKASDTR----------------------ESPDAQETQTALKLCFTLPASC 2044
              + E++ E   SDT                        +PD+++TQ ALK+  TLP+SC
Sbjct: 628  GSAEEIEDEPLKSDTNPHESCETNLKDQTDSKEDEKDTRNPDSEQTQMALKMALTLPSSC 687

Query: 2045 YATMAIRELLKTSTSVAFHKALN 2113
            YATMAIRELLKTSTSVA+HK LN
Sbjct: 688  YATMAIRELLKTSTSVAYHKTLN 710


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  848 bits (2192), Expect = 0.0
 Identities = 433/682 (63%), Positives = 527/682 (77%), Gaps = 30/682 (4%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEM-VQKRE 334
            +S+ E DVGI  YIS LPGFRGILKQRYSDFIVNEVD DGNVVHLTS+D PPE+ V +  
Sbjct: 41   KSVGESDVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEVIVSESG 100

Query: 335  LKLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHRT 514
              +     +SY SEIE FRSLAGDSDA  L+ F++++NSG  D     V SP +DK+HRT
Sbjct: 101  PTIVHSTSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSPDTDKTHRT 160

Query: 515  AVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRGS 694
            AVHNFFK K  FLVTDT+DGPD SSKC+RVR+DSG   ++G+ S+KRK+RG KPFDSRGS
Sbjct: 161  AVHNFFK-KFKFLVTDTIDGPDSSSKCVRVRVDSGAQNNRGRFSKKRKERGDKPFDSRGS 219

Query: 695  DDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVFK 874
            D+WPEH+GKFLRFHLYKENKDTQEAL LIGKMLGIQ RSFGF+GTKDKR+++TQRVTVFK
Sbjct: 220  DNWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRSISTQRVTVFK 279

Query: 875  IRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSDL 1054
              A R+A+LN+RL GIK+G+FSY ++GL+LGQLLGNRFTITLRGVVA SE+ IKA+   L
Sbjct: 280  QHASRIAALNDRLIGIKLGNFSYIQEGLLLGQLLGNRFTITLRGVVANSEDVIKASAEAL 339

Query: 1055 GKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYKE 1234
            G++GFINYFGLQRFGSG+VPTH +G++LL+GEWK AVNMILDPR+G+   + + R++YKE
Sbjct: 340  GRHGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGDILLLMRARDYYKE 399

Query: 1235 TNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHAA 1414
            ++D+DGTL+QLP  +VAERAILQCLKK PGNYLQALKA+PRT+RMMYVHSYQSYLWNHAA
Sbjct: 400  SDDIDGTLKQLPRYLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 459

Query: 1415 SIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTS---ECEDDATIDGVNGSHADELSEV 1585
            S+RVQKYG +KVV+GDLVY KE  +H     V  S   E ED    +  +  H +E+ ++
Sbjct: 460  SMRVQKYGIDKVVVGDLVYCKE--NHTETAAVQNSEEYEDEDCGDANSYDSCHLEEVCKL 517

Query: 1586 DLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLT 1765
             LP +R + VKA+   D+L GN+T +D+VLPLPGSR  YP NDIA++Y+DLA KD ISLT
Sbjct: 518  GLPTERHKLVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTNDIAEVYNDLATKDSISLT 577

Query: 1766 ESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISKPVESS- 1942
             S H+VKEFSITSMTG YRRVFQ+P D+EWE++ Y D N PLA++D+  +  S+ VE S 
Sbjct: 578  NSVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISK 637

Query: 1943 --ELQPEDKASDTRESPD-----------------------AQETQTALKLCFTLPASCY 2047
              ++  + K  D+ +S D                        Q+ Q ALKL FTLPAS Y
Sbjct: 638  EEKIADKSKNEDSLDSTDQSVCCKKNIQLEAGGKENENGQGTQDPQMALKLSFTLPASSY 697

Query: 2048 ATMAIRELLKTSTSVAFHKALN 2113
            ATMAIRELLKTSTSVAFHK LN
Sbjct: 698  ATMAIRELLKTSTSVAFHKTLN 719


>ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Capsella rubella]
            gi|482568803|gb|EOA32992.1| hypothetical protein
            CARUB_v10016322mg [Capsella rubella]
          Length = 704

 Score =  842 bits (2176), Expect = 0.0
 Identities = 431/675 (63%), Positives = 523/675 (77%), Gaps = 23/675 (3%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPEMVQKREL 337
            ++++E DVGI C+IS+LPGFRGILKQRY+DFIVNEVD++GNVVHLTS+D+PPEM  K E 
Sbjct: 40   KTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDINGNVVHLTSLDLPPEMDVKEED 99

Query: 338  KLPEQHD--KSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSPSSDKSHR 511
            K     +  ++YTS IESF+S++  +DA +L+  I ++ SG++D  S  VL PSSDKS R
Sbjct: 100  KTKSSDNVPQNYTSAIESFKSISNATDAERLETLINQVTSGTDDEISPVVLDPSSDKSKR 159

Query: 512  TAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGGKPFDSRG 691
            TA+HNF KE   FLVTDTVDGPD +SKCIRVR++SG + ++G  S+KRK+RG KPFDSRG
Sbjct: 160  TAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKPFDSRG 219

Query: 692  SDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVTVF 871
            S+ WPEH+GKFLRFHLYKENKDTQEAL LIGKMLG+QP+SFGFSGTKDKR+V+TQ VTVF
Sbjct: 220  SEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQCVTVF 279

Query: 872  KIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAALSD 1051
            K +A +LA+LN+RLFGIKVGDF + K+GL+LGQL+GNRFTITLRGVVA+SEETIK +   
Sbjct: 280  KQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMGNRFTITLRGVVADSEETIKKSAES 339

Query: 1052 LGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREHYK 1231
            LGK GFINYFGLQRFGSG+VPTH +G+ALLKGEWK A       R      +   RE+YK
Sbjct: 340  LGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA------ERINAWHVVNDAREYYK 393

Query: 1232 ETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWNHA 1411
            ET D+DGTLRQLP  +VAERAILQCLKK PGNYLQALK +PRT+RMMYVHSYQSYLWN+A
Sbjct: 394  ETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNA 453

Query: 1412 ASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSEVDL 1591
            AS+RV+KYG  +VVLGDLV +K D +        TSE +++   D ++    D+ + VDL
Sbjct: 454  ASLRVKKYGTSQVVLGDLVSTKIDATKKM---ADTSEHKEN-NEDALDCDQVDDTAIVDL 509

Query: 1592 PGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLTES 1771
            P +R   VK +  EDL  G Y+  DIVLPLPGSR  YP NDIA+IYHDLAKKD ISLT+S
Sbjct: 510  PAERSDLVKVVSVEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKKDGISLTDS 569

Query: 1772 KHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKIT----------- 1918
             H VKEFSITSMTGGYRRVFQKPIDFEWE+L YTD NKPLAETD+D+IT           
Sbjct: 570  IHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRITMTVDKVGSAEE 629

Query: 1919 --------ISKPVESSELQPEDKASDTRE--SPDAQETQTALKLCFTLPASCYATMAIRE 2068
                    IS P E+      ++  D ++  +P++++TQ ALK+  TLP+SCYATMAIRE
Sbjct: 630  VEDESMNPISNPPETDLNDQTERKDDEKDTGNPNSEQTQMALKMALTLPSSCYATMAIRE 689

Query: 2069 LLKTSTSVAFHKALN 2113
            LLKTSTSVA+HK LN
Sbjct: 690  LLKTSTSVAYHKTLN 704


>ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citrus clementina]
            gi|557535111|gb|ESR46229.1| hypothetical protein
            CICLE_v10003382mg [Citrus clementina]
          Length = 697

 Score =  840 bits (2169), Expect = 0.0
 Identities = 436/689 (63%), Positives = 523/689 (75%), Gaps = 43/689 (6%)
 Frame = +2

Query: 158  RSIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPE--MVQKR 331
            ++++E D GI C+IS LPGFRGILKQRY DFIVNEVD D  VVHLTS+DVPPE   V+  
Sbjct: 2    KTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEHN 61

Query: 332  ELKLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSG-SEDIASSFVLSPSSDKSH 508
            E K  +Q ++SY SEIESFRSLAGDSDA  L+  I ++ SG +ED     VLS +SDKSH
Sbjct: 62   ETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKSH 121

Query: 509  RTAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQ-SKGKASRKRKDRGGKPFDS 685
            RTA+HNFFK+   FLVTDTVDGPD SSKCIRVRL+SGGN  S G+ S+KRK+RG  PFDS
Sbjct: 122  RTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFDS 181

Query: 686  RGSDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVTTQRVT 865
            RGS++WPE LGKFLRFHLYKENKDTQEAL LI KMLGI PRSFGF+GTKDKR+V+TQRVT
Sbjct: 182  RGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRVT 241

Query: 866  VFKIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEETIKAAL 1045
            VFK RA +LA+LN+RL GI++GDF Y K+GL+LGQLLGNRFTITLRGVV +SE+ IKA+ 
Sbjct: 242  VFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASA 301

Query: 1046 SDLGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQKIREH 1225
            + LG+ GFINYFGLQRFGSG+VPTH +G+ LL+GEWK+AV MILDPR+G+   + K RE+
Sbjct: 302  NSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGD-ILLFKAREY 360

Query: 1226 YKETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQSYLWN 1405
            YKET+D+DGTLR+LP ++VAERAILQCLKK PGNYLQALKA+PRT+RMMYVHSYQS+LWN
Sbjct: 361  YKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWN 420

Query: 1406 HAASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHADELSEV 1585
            HAAS RVQK+G E VV+GDLV+ K D +   + G    E E +++ D  + SH DE+ E 
Sbjct: 421  HAASARVQKHGTEHVVVGDLVFCKGDDTEKEL-GCVNPEFEYESSNDADDSSHLDEVPET 479

Query: 1586 DLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKDDISLT 1765
            D P  R   VK +  ED+  G YT +D+VLPLPGSR  YPMND+A++YH LA+KD I+LT
Sbjct: 480  DHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 539

Query: 1766 ESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKI---------- 1915
            ES H+VKEFSITSMTG YRRVFQKP+DFEWE+L Y DGNKPLAETD+DKI          
Sbjct: 540  ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLANIVK 599

Query: 1916 ---------------------TISKPVESSELQPEDKASDTRESP--------DAQETQT 2008
                                 ++SK ++ S    E   +   + P        D+Q  Q 
Sbjct: 600  EEEAVCGNKKKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGADSQGKQM 659

Query: 2009 ALKLCFTLPASCYATMAIRELLKTSTSVA 2095
            ALKL  TLP+SCYATMAIRELLKTSTSV+
Sbjct: 660  ALKLGLTLPSSCYATMAIRELLKTSTSVS 688


>ref|XP_004494684.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Cicer arietinum]
          Length = 698

 Score =  833 bits (2153), Expect = 0.0
 Identities = 436/698 (62%), Positives = 524/698 (75%), Gaps = 47/698 (6%)
 Frame = +2

Query: 161  SIEEPDVGIFCYISKLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSMDVPPE-------- 316
            S+EE DVGI CYIS LPGFRG+LKQRYSDFIVNEVD+DG VV L+S++   E        
Sbjct: 3    SMEEHDVGISCYISNLPGFRGVLKQRYSDFIVNEVDIDGKVVELSSLEASAEESKVPVDE 62

Query: 317  --MVQKRELKLPEQHDKSYTSEIESFRSLAGDSDAVQLKDFIEKLNSGSEDIASSFVLSP 490
               VQ+ +    E    SY S+IESF+SLAG+SDA  L++FI ++N G ED  S  +LSP
Sbjct: 63   SKSVQENKTNTSESEVISYASQIESFKSLAGESDASSLEEFINQINVGGEDSPSPIILSP 122

Query: 491  SSDKSHRTAVHNFFKEKMNFLVTDTVDGPDQSSKCIRVRLDSGGNQSKGKASRKRKDRGG 670
             SDKSHRTAVH FF+E   FLVTDTVDGPD SSKCIRVRL+SGG  +KGK SRKRKDR  
Sbjct: 123  DSDKSHRTAVHVFFRENFKFLVTDTVDGPDASSKCIRVRLNSGGPNNKGKNSRKRKDRDN 182

Query: 671  KPFDSRGSDDWPEHLGKFLRFHLYKENKDTQEALRLIGKMLGIQPRSFGFSGTKDKRAVT 850
            KPFDSRGS++WPE+ GKFLRFHL+KENKDTQEAL ++G MLGI+ RSFGF+GTKDKRAVT
Sbjct: 183  KPFDSRGSENWPENAGKFLRFHLFKENKDTQEALGVLGNMLGIKSRSFGFAGTKDKRAVT 242

Query: 851  TQRVTVFKIRARRLASLNERLFGIKVGDFSYSKDGLVLGQLLGNRFTITLRGVVAESEET 1030
            TQRVTV+K +AR+LASLNE+LFGIKVGDF Y  +GL LGQLLGNRFTITLRG+VA+S +T
Sbjct: 243  TQRVTVYKQQARKLASLNEKLFGIKVGDFCYVNEGLCLGQLLGNRFTITLRGIVADSVDT 302

Query: 1031 IKAALSDLGKYGFINYFGLQRFGSGTVPTHRIGSALLKGEWKTAVNMILDPRDGERDDIQ 1210
            IKAA   LG++GFINYFGLQRFGSG+VPTHRIG+AL +GEWK AV++ILDPRDGER  I 
Sbjct: 303  IKAAADSLGRHGFINYFGLQRFGSGSVPTHRIGAALFRGEWKLAVDLILDPRDGERYVIA 362

Query: 1211 KIREHYKETNDVDGTLRQLPHNMVAERAILQCLKKSPGNYLQALKAVPRTMRMMYVHSYQ 1390
            K R++YK+TNDV GTL+QLP  +VAERA+L+ LK+ PGNYLQALK++PRT+RMMYVHSYQ
Sbjct: 363  KARKYYKDTNDVAGTLKQLPQFLVAERAVLKSLKQFPGNYLQALKSIPRTLRMMYVHSYQ 422

Query: 1391 SYLWNHAASIRVQKYGAEKVVLGDLVYSKEDGSHDNIPGVHTSECEDDATIDGVNGSHAD 1570
            SYLWNHAAS RVQKYG E+VVLGDLVY KE+        +  SEC+DD   D  + +  D
Sbjct: 423  SYLWNHAASTRVQKYGTEQVVLGDLVYCKEN-PPSKATEIVGSECDDDCG-DIYDSNIED 480

Query: 1571 ELSEVDLPGDRCQPVKAIDGEDLLKGNYTAEDIVLPLPGSRATYPMNDIADIYHDLAKKD 1750
            E+ E D+       VKA++ EDL   +YT +D++LP+PGSR+ YP NDI  +Y+DL  KD
Sbjct: 481  EIPE-DIHDKSNSSVKAVNAEDLNSKSYTIDDVILPMPGSRSIYPANDIVKVYNDLTNKD 539

Query: 1751 DISLTESKHDVKEFSITSMTGGYRRVFQKPIDFEWEILKYTDGNKPLAETDMDKITISK- 1927
             ISLTE+ H+ KEFS+TS+TG YRRVFQKPI+FEWE+L YTD NKPL ETD+DKI  SK 
Sbjct: 540  GISLTENVHNAKEFSMTSVTGSYRRVFQKPINFEWELLTYTDSNKPLVETDLDKIGKSKR 599

Query: 1928 ----------------------PVESS------ELQPEDKAS--------DTRESPDAQE 1999
                                   VESS      E   ++ AS        ++     +++
Sbjct: 600  TNVHAVGASNGQKETTAFDCIRQVESSDDGVKVETDYDENASKEVILPHDESVPDSSSKD 659

Query: 2000 TQTALKLCFTLPASCYATMAIRELLKTSTSVAFHKALN 2113
            + TALKL FTLP+SCYATMAIRELLKTSTSVA+ K LN
Sbjct: 660  SHTALKLTFTLPSSCYATMAIRELLKTSTSVAYQKTLN 697