BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00008101
         (850 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318764.2| basic helix-loop-helix family protein [Popul...    75   3e-11
gb|EOY22603.1| Basic helix-loop-helix DNA-binding superfamily pr...    69   2e-09
gb|EOY22604.1| DNA binding protein, putative isoform 4, partial ...    68   5e-09
gb|EOY22601.1| Basic helix-loop-helix DNA-binding superfamily pr...    68   5e-09
ref|XP_002511110.1| DNA binding protein, putative [Ricinus commu...    67   8e-09
emb|CCF72395.1| bHLH trascription factor [Nicotiana occidentalis...    64   7e-08
ref|XP_002322296.2| basic helix-loop-helix family protein [Popul...    64   9e-08
ref|XP_004503792.1| PREDICTED: transcription factor bHLH137-like...    57   6e-06

>ref|XP_002318764.2| basic helix-loop-helix family protein [Populus trichocarpa]
           gi|550326820|gb|EEE96984.2| basic helix-loop-helix
           family protein [Populus trichocarpa]
          Length = 359

 Score = 75.1 bits (183), Expect = 3e-11
 Identities = 67/220 (30%), Positives = 87/220 (39%), Gaps = 4/220 (1%)
 Frame = +3

Query: 201 MAAFSYQELPFLVDCVITPEMMMKLXXXXXXXXXXHATNSPLLSPSCCFSEDQSHLLNPN 380
           MAAFSYQ  P  +D VI P +   +                 ++ S  +  D++  +N N
Sbjct: 1   MAAFSYQHPPLFLDSVILPNITTPIMN---------------MNNSMYWFYDEAGGINSN 45

Query: 381 SNYSEPIFEQLQFQYPFENLVGFHQGEENPIDFNLHESSCVEQGGTPMGSSENHEPSKKQ 560
           S Y           YP E    FH   E P+D   HE S  +       S      +KKQ
Sbjct: 46  SFYQV---------YPPET---FH---EAPLDVRFHEFSHHDHSSKVSLSDNETSLTKKQ 90

Query: 561 STNQNXXXXXXXXXXXXXW--VPVKNKRKLKGDGSSPNTSKDVR--RSKKQKKCNNESVX 728
           ST  +                 PV  KRK      +   SKDV+  +SK+QKKC  +   
Sbjct: 91  STGSSTVVDKLETGEQVTQEVTPVDRKRKTTNGSLNSAQSKDVKEVKSKRQKKCRGDM-- 148

Query: 729 XXXXXXXXXXXXXVASNTAQEAPKGYIHVRARRGQATDSH 848
                              +E P GY+HVRARRGQATDSH
Sbjct: 149 -----KQEEKRPKAVKKVPEEPPTGYVHVRARRGQATDSH 183


>gb|EOY22603.1| Basic helix-loop-helix DNA-binding superfamily protein, putative
           isoform 3, partial [Theobroma cacao]
          Length = 411

 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 72/242 (29%), Positives = 102/242 (42%), Gaps = 5/242 (2%)
 Frame = +3

Query: 138 EQNHFHI*ERNRARNHKTQKKMAAFSYQELPFLVDCVITPEMMMKLXXXXXXXXXXHATN 317
           E  HF + E  +   H     MAAFS+Q  PFL+D +  P    K+              
Sbjct: 48  ETLHFPLFELQKPLPH-----MAAFSFQPHPFLLDSIFLPNTPTKVSG------------ 90

Query: 318 SPLLSPSCCFSEDQSHLLNPNSNYSEPIFEQLQFQYPFENLVGFHQGEENPIDFNLHESS 497
                    F E+     N NSN     F Q    YP E +      +E+P+D   HESS
Sbjct: 91  ---------FMEEG----NINSN----CFSQF---YPPEPI------QESPLDPKFHESS 124

Query: 498 CVEQGGTPMGSSENHEPSKKQSTNQNXXXXXXXXXXXXXW-VPVKNKRKLKGDGSSPNT- 671
           C++       S      +KKQST+ +               V + ++++     ++ N+ 
Sbjct: 125 CLDHSSKLAHSDNEPSVTKKQSTDDSTVVDKLESGEQVTQNVTLTDRKRKTRSRTTLNSA 184

Query: 672 -SKDVR--RSKKQKKCNNESVXXXXXXXXXXXXXXVASNTAQEAPKGYIHVRARRGQATD 842
            SKD +  +SKKQ+K N+                  A+   +E P GYIHVRARRGQATD
Sbjct: 185 QSKDAKEGKSKKQRKRNDVLKNEKKESKADKKDQKKAT---EEPPTGYIHVRARRGQATD 241

Query: 843 SH 848
           SH
Sbjct: 242 SH 243


>gb|EOY22604.1| DNA binding protein, putative isoform 4, partial [Theobroma cacao]
          Length = 292

 Score = 67.8 bits (164), Expect = 5e-09
 Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 5/221 (2%)
 Frame = +3

Query: 201 MAAFSYQELPFLVDCVITPEMMMKLXXXXXXXXXXHATNSPLLSPSCCFSEDQSHLLNPN 380
           MAAFS+Q  PFL+D +  P    K+                       F E+     N N
Sbjct: 1   MAAFSFQPHPFLLDSIFLPNTPTKVSG---------------------FMEEG----NIN 35

Query: 381 SNYSEPIFEQLQFQYPFENLVGFHQGEENPIDFNLHESSCVEQGGTPMGSSENHEPSKKQ 560
           SN     F Q    YP E +      +E+P+D   HESSC++       S      +KKQ
Sbjct: 36  SN----CFSQF---YPPEPI------QESPLDPKFHESSCLDHSSKLAHSDNEPSVTKKQ 82

Query: 561 STNQNXXXXXXXXXXXXXW-VPVKNKRKLKGDGSSPNT--SKDVR--RSKKQKKCNNESV 725
           ST+ +               V + ++++     ++ N+  SKD +  +SKKQ+K N+   
Sbjct: 83  STDDSTVVDKLESGEQVTQNVTLTDRKRKTRSRTTLNSAQSKDAKEGKSKKQRKRNDVLK 142

Query: 726 XXXXXXXXXXXXXXVASNTAQEAPKGYIHVRARRGQATDSH 848
                          A+   +E P GYIHVRARRGQATDSH
Sbjct: 143 NEKKESKADKKDQKKAT---EEPPTGYIHVRARRGQATDSH 180


>gb|EOY22601.1| Basic helix-loop-helix DNA-binding superfamily protein, putative
           isoform 1 [Theobroma cacao] gi|508775346|gb|EOY22602.1|
           Basic helix-loop-helix DNA-binding superfamily protein,
           putative isoform 1 [Theobroma cacao]
          Length = 348

 Score = 67.8 bits (164), Expect = 5e-09
 Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 5/221 (2%)
 Frame = +3

Query: 201 MAAFSYQELPFLVDCVITPEMMMKLXXXXXXXXXXHATNSPLLSPSCCFSEDQSHLLNPN 380
           MAAFS+Q  PFL+D +  P    K+                       F E+     N N
Sbjct: 1   MAAFSFQPHPFLLDSIFLPNTPTKVSG---------------------FMEEG----NIN 35

Query: 381 SNYSEPIFEQLQFQYPFENLVGFHQGEENPIDFNLHESSCVEQGGTPMGSSENHEPSKKQ 560
           SN     F Q    YP E +      +E+P+D   HESSC++       S      +KKQ
Sbjct: 36  SN----CFSQF---YPPEPI------QESPLDPKFHESSCLDHSSKLAHSDNEPSVTKKQ 82

Query: 561 STNQNXXXXXXXXXXXXXW-VPVKNKRKLKGDGSSPNT--SKDVR--RSKKQKKCNNESV 725
           ST+ +               V + ++++     ++ N+  SKD +  +SKKQ+K N+   
Sbjct: 83  STDDSTVVDKLESGEQVTQNVTLTDRKRKTRSRTTLNSAQSKDAKEGKSKKQRKRNDVLK 142

Query: 726 XXXXXXXXXXXXXXVASNTAQEAPKGYIHVRARRGQATDSH 848
                          A+   +E P GYIHVRARRGQATDSH
Sbjct: 143 NEKKESKADKKDQKKAT---EEPPTGYIHVRARRGQATDSH 180


>ref|XP_002511110.1| DNA binding protein, putative [Ricinus communis]
           gi|223550225|gb|EEF51712.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 422

 Score = 67.0 bits (162), Expect = 8e-09
 Identities = 68/222 (30%), Positives = 91/222 (40%), Gaps = 6/222 (2%)
 Frame = +3

Query: 201 MAAFSYQEL-PFLVDCVITPEMMMKLXXXXXXXXXXHATNSPLLSPSCCFSEDQSHLLNP 377
           MAAFSYQ+  PF +D V  P                   ++  +     F E  + ++N 
Sbjct: 1   MAAFSYQQHHPFHLDSVFLP-------------------SASAIKNLSGFLEKGNSIIN- 40

Query: 378 NSNYSEPIFEQLQFQYPFENLVGFHQGEENPIDFNLHESSCVEQGGTPMGSSENHEPS-- 551
            +NY        QF  P E            +D   HE+S      + + +  ++EPS  
Sbjct: 41  -TNYFS------QFYPPLETTPD--------LDVRFHETSPPIDHSSMVAALSDNEPSSV 85

Query: 552 -KKQSTNQNXXXXXXXXXXXXXW--VPVKNKRKLKGDGSSPNTSKDVRRSKKQKKCNNES 722
            KKQST+ +                 P+  KRK   + +    ++D  R KKQKKCNNE 
Sbjct: 86  TKKQSTDSSTVVDKFESGEQVTQKLAPMDKKRKSSFNSAQSKDARD-GRGKKQKKCNNEV 144

Query: 723 VXXXXXXXXXXXXXXVASNTAQEAPKGYIHVRARRGQATDSH 848
                          V     QE P GYIHVRARRGQATDSH
Sbjct: 145 KEDKKPKAEKKDQKKVPD---QEPPTGYIHVRARRGQATDSH 183


>emb|CCF72395.1| bHLH trascription factor [Nicotiana occidentalis subsp. hesperis]
          Length = 362

 Score = 63.9 bits (154), Expect = 7e-08
 Identities = 65/230 (28%), Positives = 92/230 (40%), Gaps = 14/230 (6%)
 Frame = +3

Query: 201 MAAFSYQ---ELPFLVDCVITPEMMMKLXXXXXXXXXXHATNSPLLSPSCCFSEDQSHLL 371
           MAAFSYQ     PFL+D V  P   +K+             N        CF++      
Sbjct: 1   MAAFSYQLQHTNPFLLDSVFLPSSPIKMSGFLEEQNNSTVQN--------CFTQF----- 47

Query: 372 NPNSNYSEPIFEQLQFQYPFENLVGFHQGEENPIDFNLHESS-CVEQGGTPMGSSENHEP 548
                Y    F+QL    P  N++G             HESS C++Q      S   H  
Sbjct: 48  -----YQPESFQQL----PTANVIG-------------HESSYCLDQSTNVTLSQNEHNS 85

Query: 549 SKKQSTNQ-------NXXXXXXXXXXXXXWVPVKNKRKLKGDGSSPNT--SKDVRRSKK- 698
               S++        +             ++P+  KRK +   SS ++  SK+V+++   
Sbjct: 86  VTNNSSSSVSLDMDSSSVTDKMESGNKPNFIPMDKKRKSREGSSSMSSAHSKNVKQADNG 145

Query: 699 QKKCNNESVXXXXXXXXXXXXXXVASNTAQEAPKGYIHVRARRGQATDSH 848
           +KK NN  +                  + +EAP GYIHVRARRGQATDSH
Sbjct: 146 KKKKNNSQLVAKDEKKGKDDNKKEEKKSNEEAPTGYIHVRARRGQATDSH 195


>ref|XP_002322296.2| basic helix-loop-helix family protein [Populus trichocarpa]
           gi|550322497|gb|EEF06423.2| basic helix-loop-helix
           family protein [Populus trichocarpa]
          Length = 357

 Score = 63.5 bits (153), Expect = 9e-08
 Identities = 64/221 (28%), Positives = 87/221 (39%), Gaps = 5/221 (2%)
 Frame = +3

Query: 201 MAAFSYQELPFLVDCVITPEMMMKLXXXXXXXXXXHATNSPLLSPSCCFS-EDQSHLLNP 377
           MA FSYQ  P   D    P +               AT +  ++ +   S E+  +++N 
Sbjct: 1   MAGFSYQHQPLFPDSAFLPSI---------------ATPTKNMNNNMYGSFEEAGNMMNT 45

Query: 378 NSNYSEPIFEQLQFQYPFENLVGFHQGEENPIDFNLHESSCVEQGGTPMGSSENHEP-SK 554
           N       F Q+     F         E   +D   H+SS  +     +  S+N    +K
Sbjct: 46  NG------FSQIYSPETFH--------ETPSLDVRFHQSSHPDDHSYKVSLSDNETSLTK 91

Query: 555 KQSTNQNXXXXXXXXXXXXXWV-PVKNKRKLKGDGSSPNTSKDVRR--SKKQKKCNNESV 725
           KQSTN +              V P+  KRK      +   SKD R+  SK+Q KC+ +  
Sbjct: 92  KQSTNSSTVVDKLESEHVTQEVTPMARKRKSANGFLNSAQSKDARKVKSKRQNKCSGDM- 150

Query: 726 XXXXXXXXXXXXXXVASNTAQEAPKGYIHVRARRGQATDSH 848
                         V      E P GYIHVRARRGQATDSH
Sbjct: 151 ------KHEEKKPKVEKKVHGEPPAGYIHVRARRGQATDSH 185


>ref|XP_004503792.1| PREDICTED: transcription factor bHLH137-like isoform X5 [Cicer
           arietinum]
          Length = 329

 Score = 57.4 bits (137), Expect = 6e-06
 Identities = 40/121 (33%), Positives = 55/121 (45%)
 Frame = +3

Query: 486 HESSCVEQGGTPMGSSENHEPSKKQSTNQNXXXXXXXXXXXXXWVPVKNKRKLKGDGSSP 665
           HE+SC+ Q      S  N+ PS + S   +                ++NK++++   S  
Sbjct: 47  HETSCLHQNSNNSLSDHNN-PSPQSSMVVDKLEKGEQVTQKVS--SMENKKRIRNKSSLS 103

Query: 666 NTSKDVRRSKKQKKCNNESVXXXXXXXXXXXXXXVASNTAQEAPKGYIHVRARRGQATDS 845
           +    V RSKKQKK + E +                    +E P GYIHVRARRGQATDS
Sbjct: 104 SPLSKVLRSKKQKKSSGEGMKREDKKKEEKKDQ---KKILEEPPTGYIHVRARRGQATDS 160

Query: 846 H 848
           H
Sbjct: 161 H 161