BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00008056
         (2007 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40014.3| unnamed protein product [Vitis vinifera]              627   e-177
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   625   e-176
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   619   e-174
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   616   e-173
gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]        605   e-170
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   596   e-167
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     583   e-163
emb|CAD20831.2| sigma factor [Spinacia oleracea]                      581   e-163
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   568   e-159
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   566   e-158
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich...   564   e-158
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps...   557   e-156
ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutr...   553   e-154
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-...   551   e-154
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A...   546   e-152
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   545   e-152
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   545   e-152
ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha...   544   e-152
dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SI...   543   e-151
ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-...   541   e-151

>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  627 bits (1617), Expect = e-177
 Identities = 348/578 (60%), Positives = 414/578 (71%), Gaps = 10/578 (1%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVST-APSISNAETAVLD 1695
            MSCL+PQFKC PDTFS + K+      I  K + ++  RVQC +ST +P +S + TAVLD
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLH-----ILSKNREAIYFRVQCALSTTSPPLSTSTTAVLD 55

Query: 1694 RMKLQIPSLDGGSNVLAAEGPLTYLRMSN-------EATIATETLINCKEXXXXXXXXXX 1536
              KL++PSL+  SN +AA  P TY+ +         EAT+A ETL+  +E          
Sbjct: 56   IEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEA 115

Query: 1535 XXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSL 1356
                                    KSE K A+  SG +    +  Q  E+ +   + DS+
Sbjct: 116  VALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSV 175

Query: 1355 ESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXX 1176
             +ET  +   S    T + DDLEPT+             I VRS RQV            
Sbjct: 176  GAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEK 235

Query: 1175 XAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLLK 1002
             +  +  V++ ST R+KR SLQEV YSDPLRYLRG+TS SRLLTA+EE ELS G+QDLLK
Sbjct: 236  ASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLK 295

Query: 1001 LERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAKK 822
            LE+L + L+ER   +PTFAQWA AA +DQK LR+R NYGI+CKDKMIKSNIRLVISIAK 
Sbjct: 296  LEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKN 355

Query: 821  YQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLP 642
            YQG+GM++QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSRTIRLP
Sbjct: 356  YQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415

Query: 641  FHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGI 462
            FHMVEA+YRV+EARKQLYSENGRHP+NEEVAEA GLSMKRLN VLLTPKAPRSLDQK GI
Sbjct: 416  FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGI 475

Query: 461  NESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTL 282
            N++LKPSEVIADPDAET E+LLIKQFM+ D+EKVL++L  REKQV++WR+G++DGRTKTL
Sbjct: 476  NQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTL 535

Query: 281  QEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168
            QEIGELMGVSRERIRQIES AFRKL NK+RTKHLQQYL
Sbjct: 536  QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL 573


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  625 bits (1611), Expect = e-176
 Identities = 348/580 (60%), Positives = 415/580 (71%), Gaps = 12/580 (2%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICF--KYKSSVCIRVQCIVST-APSISNAETAV 1701
            MSCL+PQFKC PDTFS + K+      +C   K + ++  RVQC +ST +P +S + TAV
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLH----ILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAV 56

Query: 1700 LDRMKLQIPSLDGGSNVLAAEGPLTYLRMSN-------EATIATETLINCKEXXXXXXXX 1542
            LD  KL++PSL+  SN +AA  P TY+ +         EAT+A ETL+  +E        
Sbjct: 57   LDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAA 116

Query: 1541 XXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITD 1362
                                      KSE K A+  SG +    +  Q  E+ +   + D
Sbjct: 117  EAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGD 176

Query: 1361 SLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXX 1182
            S+ +ET  +   S    T + DDLEPT+             I VRS RQV          
Sbjct: 177  SVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAA 236

Query: 1181 XXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDL 1008
               +  +  V++ ST R+KR SLQEV YSDPLRYLRG+TS SRLLTA+EE ELS G+QDL
Sbjct: 237  EKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDL 296

Query: 1007 LKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIA 828
            LKLE+L + L+ER   +PTFAQWA AA +DQK LR+R NYGI+CKDKMIKSNIRLVISIA
Sbjct: 297  LKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIA 356

Query: 827  KKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIR 648
            K YQG+GM++QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSRTIR
Sbjct: 357  KNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 416

Query: 647  LPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKF 468
            LPFHMVEA+YRV+EARKQLYSENGRHP+NEEVAEA GLSMKRLN VLLTPKAPRSLDQK 
Sbjct: 417  LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKI 476

Query: 467  GINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTK 288
            GIN++LKPSEVIADPDAET E+LLIKQFM+ D+EKVL++L  REKQV++WR+G++DGRTK
Sbjct: 477  GINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTK 536

Query: 287  TLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168
            TLQEIGELMGVSRERIRQIES AFRKL NK+RTKHLQQYL
Sbjct: 537  TLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL 576


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  619 bits (1597), Expect = e-174
 Identities = 352/586 (60%), Positives = 411/586 (70%), Gaps = 13/586 (2%)
 Frame = -2

Query: 1880 NQKMSCLVPQFKCQPDTFSIYSKI---RPPNSAICFKYKSSVCIRVQCIVST-APSISNA 1713
            N+ MSCL+PQFKCQPDTFSI+ +       +S+   K K  +C R  C++ST +PS S A
Sbjct: 21   NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTA 80

Query: 1712 ETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXX 1554
             T VLD  KL++PSL+  SN +AA    TY      +T       +ATETL + +     
Sbjct: 81   MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 140

Query: 1553 XXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAA 1374
                                    H     K ++K A + S  +      +QL E  +A+
Sbjct: 141  ASAEAVALARAAVKVAKDAALMVNH-HNSAKPKSKPAISLSA-DTNTSMWAQLTERERAS 198

Query: 1373 GITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXX 1194
             I DS+  E +P   +S     N+  DLEPT              IAVRS RQ       
Sbjct: 199  IIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258

Query: 1193 XXXXXXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVG 1020
                   A ++  VK+ ST R+KRPS+QEV YSDPLRYLR +TS SRLLTA+EE +LS G
Sbjct: 259  TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318

Query: 1019 VQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLV 840
            +QDLLKLE L + L ER  G PTFAQWA AA +DQ+ LR+RLNYGI CKDKMI SNIRLV
Sbjct: 319  IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378

Query: 839  ISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQS 660
            ISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QS
Sbjct: 379  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438

Query: 659  RTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSL 480
            RTIRLPFHMVEA+YRV+EARKQLYSENGRHP+NEEVAEA GLSMKRL+ VLLTPKAPRSL
Sbjct: 439  RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSL 498

Query: 479  DQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDD 300
            DQKFGIN++LKPSEVIADP+AET EDLLIK+FMK D+EKVLDTL  RE+QVV+WRFG++D
Sbjct: 499  DQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 558

Query: 299  GRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162
            GR KTLQEIGELMGVSRERIRQIESSAFRKL NKKRTKHL QY  T
Sbjct: 559  GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  616 bits (1589), Expect = e-173
 Identities = 350/586 (59%), Positives = 410/586 (69%), Gaps = 13/586 (2%)
 Frame = -2

Query: 1880 NQKMSCLVPQFKCQPDTFSIYSKI---RPPNSAICFKYKSSVCIRVQCIVST-APSISNA 1713
            N+ MSCL+PQFKCQPDTFSI+ +       +S+   K K  +C R  C++ST +PS S A
Sbjct: 21   NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTA 80

Query: 1712 ETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXX 1554
             T VLD  KL++PSL+  SN +AA    TY      +T       +ATETL + +     
Sbjct: 81   MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 140

Query: 1553 XXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAA 1374
                                    H     K ++K A + S  +      +QL E  +A+
Sbjct: 141  ASAEAVALARAAVKVAKDAALMVNH-HNSAKPKSKPAISLSA-DTSTSMWAQLTERERAS 198

Query: 1373 GITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXX 1194
             I DS+  E +P   +S     N+  DLEPT              IAVRS RQ       
Sbjct: 199  IIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258

Query: 1193 XXXXXXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVG 1020
                   A ++  VK+ ST R+KRPS+QEV YSDPLRYLR +TS SRLLTA+EE +LS G
Sbjct: 259  TRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318

Query: 1019 VQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLV 840
            +QDLLKLE L + L ER  G PTFAQWA AA +DQ+ LR+RLNYGI CKDKMI SNIRLV
Sbjct: 319  IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378

Query: 839  ISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQS 660
            ISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QS
Sbjct: 379  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438

Query: 659  RTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSL 480
            RTIRLPFHMVEA+YRV+EARKQLYSENGRHP+NEEVA+A GLSMKRL+ VLL PKAPRSL
Sbjct: 439  RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAPRSL 498

Query: 479  DQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDD 300
            DQKFGIN++LKPSEVIADP+AET EDLLIK+FMK D+EKVLDTL  RE+QVV+WRFG++D
Sbjct: 499  DQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 558

Query: 299  GRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162
            GR KTLQEIGELMGVSRERIRQIESSAFRKL NKKRTKHL QY  T
Sbjct: 559  GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
          Length = 623

 Score =  605 bits (1559), Expect = e-170
 Identities = 353/621 (56%), Positives = 411/621 (66%), Gaps = 51/621 (8%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIR-----------------------------PPNSAICF- 1782
            MSCL+PQFKCQPDTFSI  +                               P  S + F 
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 1781 ---KYKSSVCIRVQCIVST-APSISNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYL-- 1620
               K+K  +C R QC++ST + S S   TAVLD  KL++PS +   N +A + P TY+  
Sbjct: 61   VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGA 120

Query: 1619 -----RMSNEATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSE 1455
                   S  AT+AT+ L+   E                           A      K+E
Sbjct: 121  TGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTE 180

Query: 1454 AKSANACSGGEIFIGKNSQLLESGQAAGITDSLESETSPLAGFSTCYETNEHDDLEPTVX 1275
             KS  + +  + F  K +   E+ +A  I DS   E+      S    T E D+LEPT  
Sbjct: 181  MKSGVSFAT-DSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNE 239

Query: 1274 XXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAISI-PVKTIST-RKKRPSLQEVKYS 1101
                        IAVRS RQ              A ++  VK+ ST RK+R +LQ+V YS
Sbjct: 240  ELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYS 299

Query: 1100 DPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARL 921
            DPLRYLRG+TS SRLLTA+EE ELS G+QDLLKLERL + L ER  G+PTFAQWA AA +
Sbjct: 300  DPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGV 359

Query: 920  DQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFD 741
            DQK LR RLNYG+ CKDKMIKSNIRLVISIAK YQG+GM+LQDLVQEGCRGLVRG EKFD
Sbjct: 360  DQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 419

Query: 740  ASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDN 561
            ASKGFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMVEA+YRV+EARKQLYSENGRHPDN
Sbjct: 420  ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDN 479

Query: 560  EEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPS--------EVIADPDAETTE 405
            EEVAEA GLSMKRL  VLLTPKAPRSLDQK GIN++LKPS        EVIADP+AET E
Sbjct: 480  EEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAE 539

Query: 404  DLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIES 225
            D+LIKQFM+ D+EKVLD+L+QRE+QV++WRFGM+DGR KTLQEIGELMGVSRERIRQIES
Sbjct: 540  DMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIES 599

Query: 224  SAFRKLTNKKRTKHLQQYLFT 162
             AFRKL NKKRTKHLQQYL +
Sbjct: 600  CAFRKLKNKKRTKHLQQYLLS 620


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  596 bits (1536), Expect = e-167
 Identities = 346/574 (60%), Positives = 398/574 (69%), Gaps = 6/574 (1%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIRP---PNSAICFKYKSSVCIRVQCIVST-APSISNAETA 1704
            MSCL+PQFKCQPDTFSI+ +       N     K +  +  R QCI+ST +PS S   TA
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTS---TA 58

Query: 1703 VLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEATIATETLINCKEXXXXXXXXXXXXXX 1524
            VLD  KL++PS +  S+ +A   P TY    +  T+ATETLI   E              
Sbjct: 59   VLDLEKLRLPSFEAPSDSIAPNSPWTYATFGS--TLATETLITSDEAVIAAAAAEAVALA 116

Query: 1523 XXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSLESET 1344
                                ++E+K     S   I   +  Q  E+ +A  I DS+ +ET
Sbjct: 117  RAAVKVAKDAALLVKNFPSAETESKLT---SPSTIDASRWPQFTETERARIIGDSVATET 173

Query: 1343 SPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAIS 1164
             P    S      E D LE T              IAVRS RQ              A S
Sbjct: 174  GPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVEKAASS 233

Query: 1163 I-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERL 990
            +  VK  ST +KKR SLQEV YSDPLRYLRG+TS SRLLTASEE ELS  +QDLLKLERL
Sbjct: 234  VVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLLKLERL 293

Query: 989  YKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGS 810
             + L ER  G+PTFAQWA AA +DQ+ LR+R+N+G  CKDKMIKSNIRLVISIAK YQG+
Sbjct: 294  QEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGA 353

Query: 809  GMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMV 630
            GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMV
Sbjct: 354  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 413

Query: 629  EASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESL 450
            EA+YRV+EARKQLYSENGRHPD+EEVAEAAGLSMKRL+ VLLTPKAPRSLDQK G+N  L
Sbjct: 414  EATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDL 473

Query: 449  KPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIG 270
            KPSEVIADP+AET E+LL+KQFMK D+EKVL+TL  RE QVV+WRFG++DGR KTLQEIG
Sbjct: 474  KPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIG 533

Query: 269  ELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168
            E+MGVSRERIRQIESSAFRKL NKKRTK L+QYL
Sbjct: 534  EIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYL 567


>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  583 bits (1502), Expect = e-163
 Identities = 335/586 (57%), Positives = 401/586 (68%), Gaps = 16/586 (2%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIRP-----PNSAICFKYKSSVCIRVQCIVST-APSISNAE 1710
            MSCL+PQF C+PDTFS     R      PNS +       +    QC++ST +PS S   
Sbjct: 1    MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHL--PKARDINSLAQCVLSTTSPSTSVGA 58

Query: 1709 TAVLDRMKLQIPSLDGGSNVLAAEGPLTY-------LRMSNEATIATETLINCKEXXXXX 1551
            T VL   KL+ PSLD  S  + +  P TY       +  + EAT+ATETL+  +E     
Sbjct: 59   TYVLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAA 118

Query: 1550 XXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAG 1371
                                    V    ++E+ S          +   ++ +++ QAA 
Sbjct: 119  AAAEAVTLAKAAVKVAKDAALL--VRPSTRAESIS---------LVSSEARNIKTAQAAS 167

Query: 1370 -ITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXX 1194
             + DSL +E + +          E +DL+PT              IAVRS RQ       
Sbjct: 168  RVRDSLRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKR 227

Query: 1193 XXXXXXXAISI-PVKTIS-TRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVG 1020
                   A ++  VK+ S +RKKR S+Q+V +SDPLRYLR +TS SRLLTA+EE ELS G
Sbjct: 228  DRAAEKAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEG 287

Query: 1019 VQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLV 840
            +QDLLKLE+L + L ER  G PTFAQWA AA +DQK LR+R+NYGI CKDKMIKSN+RLV
Sbjct: 288  IQDLLKLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLV 347

Query: 839  ISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQS 660
            ISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QS
Sbjct: 348  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 407

Query: 659  RTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSL 480
            RTIRLPFHMVEA+YRV+EARKQLYSENGR P++EEVAEA GLSMKRL  VLLTPKAPRSL
Sbjct: 408  RTIRLPFHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSL 467

Query: 479  DQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDD 300
            +QK GIN++LKPSE+IADPDAET ED+L +QFMK D++KVLD+L QREKQV++WRFGMDD
Sbjct: 468  EQKIGINQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDD 527

Query: 299  GRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162
            GR KTLQEIGELMGVSRERIRQIES AFRKL NKKRTKHLQQYL +
Sbjct: 528  GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573


>emb|CAD20831.2| sigma factor [Spinacia oleracea]
          Length = 575

 Score =  581 bits (1497), Expect = e-163
 Identities = 328/584 (56%), Positives = 398/584 (68%), Gaps = 15/584 (2%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAIC----FKYKSSVCIRVQCIVSTAPS-ISNAET 1707
            M+CL+PQFKCQPDTFSI S + PP+++       + +  VC R QC VST P   + AET
Sbjct: 1    MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAET 60

Query: 1706 AVLDRMKLQIPSLDGGSNVLAAEGPLTYL-------RMSNEATIATETLINCKEXXXXXX 1548
            ++ D  KL++P ++  SN L+A    T+L        +  +  +  + LI  +E      
Sbjct: 61   SIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAAA 120

Query: 1547 XXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGI 1368
                                 A   Q  K  +K       G+      +QLLE+ Q   +
Sbjct: 121  AAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLE-----GQSLHFSGAQLLENEQVGSM 175

Query: 1367 TDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQ---VXXXXX 1197
             +   SE S   G +     +E  D+EPT+             I VRSTRQ         
Sbjct: 176  RNFEGSENSLREGDTV----SEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRAR 231

Query: 1196 XXXXXXXXAISIPVKTISTRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGV 1017
                     +S+ V + ++RKKR S+QEV YSDPLRYLRG+T+ SRLLT+SEE ELS G+
Sbjct: 232  AAEKVASNVVSVKVGS-NSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGI 290

Query: 1016 QDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVI 837
            QDLLKLE+L+  LK R    P+F QWA AA +DQ+ LR+RLN+G  CKDKMIKSN+RLVI
Sbjct: 291  QDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVI 350

Query: 836  SIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSR 657
            SIAK YQGSGM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSR
Sbjct: 351  SIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 410

Query: 656  TIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLD 477
            TIRLPFHMVEA+YRV+EARKQL SENG+ P+NEEVAEA GLSMKRL  VL+TPKAPRSLD
Sbjct: 411  TIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLD 470

Query: 476  QKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDG 297
            QK G N +LKPSEVIADP+AET EDLL KQFM+ D+EKVLDTL+ REKQV++WRFG++DG
Sbjct: 471  QKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDG 530

Query: 296  RTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLF 165
            R KTLQEIGELMGVSRERIRQIESSAFRKL NKK+T +LQQY+F
Sbjct: 531  RMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYMF 574


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  568 bits (1465), Expect = e-159
 Identities = 323/525 (61%), Positives = 372/525 (70%), Gaps = 9/525 (1%)
 Frame = -2

Query: 1709 TAVLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXX 1551
            T VLD  KL++PSL+  SN +AA    TY      +T       +ATETL + +      
Sbjct: 2    TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 61

Query: 1550 XXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAG 1371
                                   H     K ++K A + S  +      +QL E  +A+ 
Sbjct: 62   SAEAVALARAAVKVAKDAALMVNH-HNSAKPKSKPAISLSA-DTNTSMWAQLTERERASI 119

Query: 1370 ITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXX 1191
            I DS+  E +P   +S     N+  DLEPT              IAVRS RQ        
Sbjct: 120  IGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 179

Query: 1190 XXXXXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGV 1017
                  A ++  VK+ ST R+KRPS+QEV YSDPLRYLR +TS SRLLTA+EE +LS G+
Sbjct: 180  RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239

Query: 1016 QDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVI 837
            QDLLKLE L + L ER  G PTFAQWA AA +DQ+ LR+RLNYGI CKDKMI SNIRLVI
Sbjct: 240  QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299

Query: 836  SIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSR 657
            SIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSR
Sbjct: 300  SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359

Query: 656  TIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLD 477
            TIRLPFHMVEA+YRV+EARKQLYSENGRHP+NEEVAEA GLSMKRL+ VLLTPKAPRSLD
Sbjct: 360  TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLD 419

Query: 476  QKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDG 297
            QKFGIN++LKPSEVIADP+AET EDLLIK+FMK D+EKVLDTL  RE+QVV+WRFG++DG
Sbjct: 420  QKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479

Query: 296  RTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162
            R KTLQEIGELMGVSRERIRQIESSAFRKL NKKRTKHL QY  T
Sbjct: 480  RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  566 bits (1459), Expect = e-158
 Identities = 324/594 (54%), Positives = 397/594 (66%), Gaps = 24/594 (4%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSI---------------------YSKIRPPNSAICFKYKSSVCIR 1755
            MSCL+PQFKC P+TFSI                     Y+K+R P+S           +R
Sbjct: 1    MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHS-----------LR 49

Query: 1754 VQCIVSTA-PSISNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEATIATETLI 1578
             QCI+S A P  S      LD  +L++P  D  ++ ++ E   +YL  + E+++A+ TL+
Sbjct: 50   TQCILSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLG-AVESSLAS-TLL 107

Query: 1577 NCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQ 1398
              +E                           A+     ++  KS ++     +   K +Q
Sbjct: 108  TSEEASIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHF-KWAQ 166

Query: 1397 LLESGQAAGITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTR 1218
             +ES +A  I + +     P+ G +    T E DD+EPT              I V+S R
Sbjct: 167  FMESERADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKR 226

Query: 1217 QVXXXXXXXXXXXXXAISIPV--KTISTRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTAS 1044
            Q                S+       S+RKKR S+QEV YSDPLRYLR +T+ SRLLTA+
Sbjct: 227  QTERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTAT 286

Query: 1043 EEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKM 864
            EE ELS G+QDLLKLERL + L ER   EPTFAQWA AA ++Q+ LR+RLNYG  CKDKM
Sbjct: 287  EELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKM 346

Query: 863  IKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAV 684
            IKSNIRLVISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAV
Sbjct: 347  IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 406

Query: 683  RKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLL 504
            RK L++QSRTIRLPFHMVEA+YRV+EARKQL  ENGRHPD++E+AEAAGLSMKRL  VL+
Sbjct: 407  RKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLM 466

Query: 503  TPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVV 324
            TPKAPRSL+QK GIN++LKPSEVI+DP+AET ED+LIKQFMK D+EKVLD+L  REKQV+
Sbjct: 467  TPKAPRSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVI 526

Query: 323  KWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162
            +WRFGM+DGR KTLQEIGE+MGVSRERIRQIES AFRKL NKKRTKHLQQY+ +
Sbjct: 527  RWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580


>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
            gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
            [Populus trichocarpa]
          Length = 567

 Score =  564 bits (1454), Expect = e-158
 Identities = 329/577 (57%), Positives = 393/577 (68%), Gaps = 9/577 (1%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTAPSISNAETAVLDR 1692
            MSCL+PQFKCQPDTFS++ +    +     +         QC++S+A    +  TAVLD 
Sbjct: 1    MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLP-------QCVLSSA----SPSTAVLDL 49

Query: 1691 MKLQIPSLDGGSNVLAAEGPLTYL-------RMSNEATIATETLINCKEXXXXXXXXXXX 1533
             KL++PSL+  S+ ++A  P TY+       +     ++A ETLI   E           
Sbjct: 50   EKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAV 109

Query: 1532 XXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSLE 1353
                            A      K E K   A S  + F    S L E  +A  I DS+ 
Sbjct: 110  ALARAAVKVAKDAAEMAKNYSFMKKETKIPIA-STTDSFSSMWSLLTEKERADIIGDSVS 168

Query: 1352 SETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXX 1173
            +ET     +S  Y T E+D LEPT              IAVRS RQ              
Sbjct: 169  AETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEKA 228

Query: 1172 AISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKL 999
            A ++  VK+ ST +KKR  LQEV  SDPLR+ RG++S SRLL+A+EE ELS G+QDLLKL
Sbjct: 229  AANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKL 288

Query: 998  ERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKY 819
            ER+ + LKER  GEP+FAQWA AA +DQ  LR+RLNYGI CKDKMIKSN+RLVISIAK Y
Sbjct: 289  ERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNY 348

Query: 818  QGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPF 639
            QG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL+++SRTIRLPF
Sbjct: 349  QGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPF 408

Query: 638  HMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGIN 459
            HMV+A+YRV+EARKQLYSENGRHPD++EVAEAAGLSMKRL+ VLLTPKAPRSLDQK G N
Sbjct: 409  HMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFN 468

Query: 458  ESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQ 279
              LK SEV ADP+AET EDLL+K+FMK D+ KVL +L+ RE QVV+WRFGM+DGR KTLQ
Sbjct: 469  MDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQ 528

Query: 278  EIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168
            EIGELMGVSRER+RQIE SAFRKL NK RTK L+QY+
Sbjct: 529  EIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYM 565


>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
            gi|482575837|gb|EOA40024.1| hypothetical protein
            CARUB_v10008711mg [Capsella rubella]
          Length = 571

 Score =  557 bits (1435), Expect = e-156
 Identities = 320/579 (55%), Positives = 394/579 (68%), Gaps = 12/579 (2%)
 Frame = -2

Query: 1868 SCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTAPSISNAETAVLDRM 1689
            SCL+PQFKCQPD+FSI+ +    + ++  + K  V  + QC V+T+P++    T+ LD  
Sbjct: 3    SCLLPQFKCQPDSFSIHFRT---SFSVSKQNKGPVFFQPQCAVTTSPALL---TSTLDVA 56

Query: 1688 KLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXXXXXXXXX 1530
            KL++PS D  S+   ++   TY      +T       +A+ETL+   E            
Sbjct: 57   KLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVA 116

Query: 1529 XXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSLE- 1353
                            +        + +A+  S  + F  K        + AGI   L  
Sbjct: 117  LARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFTEK--------ERAGILGHLAV 168

Query: 1352 SETSPLAGFSTCYETNEHD--DLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXX 1179
            S+T  ++  ST   +N+    DL   +             +AVRSTRQ            
Sbjct: 169  SDTGIVSDKSTAPASNKESSADLISEIQEVELVEEQPAASLAVRSTRQTERKARRAKGLE 228

Query: 1178 XXAISIP-VKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLL 1005
              A +IP VKT S+ RKKR   QEV ++DPLRYLR +TS S+LLT  EE ELS G+QDLL
Sbjct: 229  KSASAIPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLL 288

Query: 1004 KLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAK 825
            KLERL   L ER   +PTF+QWA+AA +DQK LR+R+NYG QCKDKMIKSNIRLVISIAK
Sbjct: 289  KLERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAK 348

Query: 824  KYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRL 645
             YQG+GM+LQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWIKQAVRKSL++QSR IRL
Sbjct: 349  NYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRL 408

Query: 644  PFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFG 465
            PFHMVEA+YRV+EARKQLY+E GRHP+NEEVAEA GLSMKRL  VLL+PK PRSLDQK G
Sbjct: 409  PFHMVEATYRVKEARKQLYTEKGRHPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIG 468

Query: 464  INESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKT 285
            +N++LKPSEVIADP+AET+ED+LIKQFM+ D++KVLD+L  REKQV++WRFGM+DGR KT
Sbjct: 469  MNQNLKPSEVIADPEAETSEDILIKQFMREDLDKVLDSLGTREKQVIRWRFGMEDGRMKT 528

Query: 284  LQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168
            LQEIGELMGVSRER+RQIESSAFRKL NKKR+ HLQQYL
Sbjct: 529  LQEIGELMGVSRERVRQIESSAFRKLKNKKRSNHLQQYL 567


>ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum]
            gi|557095448|gb|ESQ36030.1| hypothetical protein
            EUTSA_v10007187mg [Eutrema salsugineum]
          Length = 579

 Score =  553 bits (1425), Expect = e-154
 Identities = 318/581 (54%), Positives = 389/581 (66%), Gaps = 14/581 (2%)
 Frame = -2

Query: 1868 SCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTAPSISNAETAVLDRM 1689
            SCL+PQFKCQPD+FSI+ K    + ++    K SV  + QC VST+P +    T++LD  
Sbjct: 3    SCLLPQFKCQPDSFSIHFKT---SYSLSKHNKGSVFFQPQCAVSTSPPLL---TSMLDVA 56

Query: 1688 KLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXXXXXXXXX 1530
            KL++PS D  S+   ++   TY      +T       +A+ETL+   E            
Sbjct: 57   KLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVA 116

Query: 1529 XXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAA---GITDS 1359
                            +    +   + +A+  S  + F  K    +    A    G+   
Sbjct: 117  LARAAVKVAKDATSFRNSYNTKVVVSSAADKRSKWDQFTEKERAGILGHLAVSDTGVVSD 176

Query: 1358 LESETSPLAGFSTCYETNEHD--DLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXX 1185
              +  +P    +   + N     DL+                 AVRSTRQ          
Sbjct: 177  KSTAPAPAPAPAPAPDCNNESSGDLKSEKQEVELLEEQLSVSSAVRSTRQTERKARRAKG 236

Query: 1184 XXXXAISIP-VKT-ISTRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQD 1011
                A S+  VKT  S+RKKR   QEV ++DPLRYLR +TS S+LLTA EEQELS G+QD
Sbjct: 237  LEKTASSMQSVKTGSSSRKKRAPSQEVDHNDPLRYLRMTTSSSKLLTAREEQELSEGIQD 296

Query: 1010 LLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISI 831
            LLKLERL   L ER   +PTFAQWA+AA +DQK LR+R+NYG QCKD+MIKSNIRLVISI
Sbjct: 297  LLKLERLQAELTERCGHQPTFAQWASAAGVDQKSLRKRINYGTQCKDRMIKSNIRLVISI 356

Query: 830  AKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTI 651
            AK YQG+GM+LQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWIKQAVRKSL++QSR I
Sbjct: 357  AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMI 416

Query: 650  RLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQK 471
            RLPFHMVEA+YRV+EARKQLYSE G+ P+NEEVAEA GLSMKRL  VLL+PK PRSLDQK
Sbjct: 417  RLPFHMVEATYRVKEARKQLYSETGKQPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQK 476

Query: 470  FGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRT 291
             GIN++LKPSEVIADP+AET+ED+LIKQFM+ D++KVLD+L+ REKQV++WRFGM+DGR 
Sbjct: 477  IGINQNLKPSEVIADPEAETSEDILIKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRM 536

Query: 290  KTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168
            KTLQEIGE MGVSRER+RQIESSAFRKL NKKR+ HLQQYL
Sbjct: 537  KTLQEIGETMGVSRERVRQIESSAFRKLKNKKRSNHLQQYL 577


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
            subsp. vesca]
          Length = 616

 Score =  551 bits (1419), Expect = e-154
 Identities = 328/608 (53%), Positives = 390/608 (64%), Gaps = 9/608 (1%)
 Frame = -2

Query: 1958 HPLSSPALRPSYVEIQGILATCDRENNQKMSCLVPQFKCQPDTFSIYSKIRPPNSAICFK 1779
            H  SS  +  S++    +     +  N K    + Q           +K R P S  C +
Sbjct: 20   HASSSSVICCSFLTPLSVPHPKPKNKNNKKKKKLTQICTDHIAVGFQAKARYPIS-FCAQ 78

Query: 1778 YKSSVCIRVQCIVSTAPSISNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYL------- 1620
            Y SS         ST+ S S     +LD  +  +PSL   S+ L    P TY        
Sbjct: 79   YMSS---------STSHSTSTPTATLLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPT 129

Query: 1619 RMSNEATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSAN 1440
              +  A +ATETL+  +E                                  K E  S  
Sbjct: 130  EANYGAALATETLLTSEEAVIAAAAAEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPV 189

Query: 1439 ACSGGEIFIGKNSQLLESGQAAGITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXX 1260
            +C G   F    +Q LE+     I DS+ SET+ +         NE +++EP        
Sbjct: 190  SC-GTSAFHINWAQHLETEPTLRIGDSMASETALVEDHFLQIAINESENVEPANEEFELL 248

Query: 1259 XXXXXXXIAVRSTRQVXXXXXXXXXXXXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRY 1086
                   IA RS+RQ              A SI  VK+ ST RKKR SLQ+V +SDPLRY
Sbjct: 249  QEQLSNGIAARSSRQTERKARRTRAAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRY 308

Query: 1085 LRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKIL 906
            LR +T  SRLLTA+EE ELS G+Q+LLKLE+L + L +R   +PTFAQWA AA +DQK L
Sbjct: 309  LRATTHTSRLLTANEEIELSEGIQELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTL 368

Query: 905  RQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGF 726
            R+R+NYGI CKDKMIKSNIRLVISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGF
Sbjct: 369  RKRVNYGIMCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 428

Query: 725  KFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAE 546
            KFSTYAHWWIKQAVRKSL++QSRTIRLPFHMVEA+YRVREA+KQLYS NGRHP++EEVAE
Sbjct: 429  KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAE 488

Query: 545  AAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIE 366
            A GLSMKRL  VLLTPKAPRSL+QK GIN++LKPS+VIADPDAET EDLL+K+FMK D+E
Sbjct: 489  ATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLE 548

Query: 365  KVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTK 186
            KVLD+L  REKQV++WRFGM+DGR KTLQEIGELMGVSRERIRQIES AFRKL NKKRTK
Sbjct: 549  KVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 608

Query: 185  HLQQYLFT 162
            HLQQY+ +
Sbjct: 609  HLQQYVLS 616


>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
            gi|548831956|gb|ERM94758.1| hypothetical protein
            AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  546 bits (1408), Expect = e-152
 Identities = 308/550 (56%), Positives = 375/550 (68%), Gaps = 12/550 (2%)
 Frame = -2

Query: 1775 KSSVCIRVQCIVSTAPSISNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYL-------R 1617
            + + C + QC+ STA       T V+D  K+++PSL G S  ++  GPLTY+       +
Sbjct: 29   REATCFQTQCVSSTA-------TVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTIGSQKK 81

Query: 1616 MSNEATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANA 1437
               EA + TE+L+  +E                                  +S+ K  + 
Sbjct: 82   TDFEAALVTESLLKSEEAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSD-KVDDF 140

Query: 1436 CSGGEIFIGKNSQLLESGQAAGITDSLESETSPLAGFSTCYET--NEHDDLEPTVXXXXX 1263
             S  +I   + ++L E  +   +  S  +   P     +  +   NE  D +        
Sbjct: 141  PSEADILRLQRARLTEMERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRENILEA 200

Query: 1262 XXXXXXXXIAVRSTRQVXXXXXXXXXXXXXA---ISIPVKTISTRKKRPSLQEVKYSDPL 1092
                    +AVRS RQ              A   I++ + T S RK+ P LQE+ YSDPL
Sbjct: 201  LQLQHSQRVAVRSRRQTERRARRAKGVEKAAANAITVKLGTTSRRKRAP-LQEIDYSDPL 259

Query: 1091 RYLRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARLDQK 912
            RYLRG+T+ ++LLTA+EE ELS G+QDLLKLE+L+K L ER  GEPTF QWA AA +DQK
Sbjct: 260  RYLRGTTNSTKLLTATEELELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQK 319

Query: 911  ILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASK 732
             LR+RL+YG  CKDKMIKSNIRLVISIAK YQG G+S+QDLVQEGCRGLVRG EKFDASK
Sbjct: 320  ALRRRLSYGTHCKDKMIKSNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKFDASK 379

Query: 731  GFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEV 552
            GFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMV+A+YRVREA KQLYSENGRHP++EEV
Sbjct: 380  GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPNDEEV 439

Query: 551  AEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLD 372
            AEA GLSMKRL  VLLTPKAPRSLDQK GIN++LKPSEVI+DP+AET EDLL+KQFMK D
Sbjct: 440  AEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQFMKQD 499

Query: 371  IEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKR 192
            +EKVL+TL  REKQVV+WRFG++DGR KTLQEIGELMGVSRERIRQIESSAFRKL NKKR
Sbjct: 500  LEKVLNTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 559

Query: 191  TKHLQQYLFT 162
            TK+L+QYL +
Sbjct: 560  TKNLRQYLLS 569


>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
            lycopersicum]
          Length = 613

 Score =  545 bits (1405), Expect = e-152
 Identities = 325/611 (53%), Positives = 384/611 (62%), Gaps = 43/611 (7%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTA------------- 1731
            MS L+PQF   PD F I +K +   +    K + S+ +R QCI+ST              
Sbjct: 1    MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDSIHLRTQCILSTTSAVTSTATSTVLG 60

Query: 1730 ------PSI----------------SNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLR 1617
                  PSI                S A T V    KL++PS +   + +A + P TY  
Sbjct: 61   IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPGIQKLKLPSFEANPDSVAPDRPWTYTG 120

Query: 1616 MSN---EATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKS 1446
                  EA    E  +  +E                                 + S+   
Sbjct: 121  AVGPPAEANTKPEDSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLKDSDNVG 180

Query: 1445 ANACSGGEIFIGKNSQLLESGQAAGITDSLESETSPL--AGFSTCYET-NEHDDLEPTVX 1275
                S       ++  L + G+  G+    E   S +   G S   +T  + DDLEP+  
Sbjct: 181  RGTLSEARTAPFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDLEPSHE 240

Query: 1274 XXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAISI-PVKTIST-RKKRPSLQEVKYS 1101
                        IAV+S RQ              A ++  VK+ ST RKKR S+Q+V YS
Sbjct: 241  ELEILQSQLSNVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQDVDYS 300

Query: 1100 DPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARL 921
            DPLRYLRG+T  SRLLTASEEQELS G+QDLLKLERL   L ER  G+PTF QWA AA +
Sbjct: 301  DPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGV 360

Query: 920  DQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFD 741
            DQ  LR+RLNYGI CKDKMIKSN+RLVISIAK YQG GM+LQDLVQEGCRGLVRG EKFD
Sbjct: 361  DQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFD 420

Query: 740  ASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDN 561
            A+KGFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMVEA+YRV+EARKQL +ENGRHP++
Sbjct: 421  ATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGRHPND 480

Query: 560  EEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFM 381
             EVAEA GLSMKRL  V+LTPKAPRSLDQK G NESLKPSEV+ADPDAET+E++L KQFM
Sbjct: 481  AEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILTKQFM 540

Query: 380  KLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTN 201
            + D+EKVLDTL  REKQVV+WRFG++DGR KTLQEIGELMGVSRERIRQIES AFRKL N
Sbjct: 541  RQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 600

Query: 200  KKRTKHLQQYL 168
            KKRTK LQQY+
Sbjct: 601  KKRTKFLQQYI 611


>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
          Length = 613

 Score =  545 bits (1404), Expect = e-152
 Identities = 324/611 (53%), Positives = 381/611 (62%), Gaps = 43/611 (7%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTA------------- 1731
            MS L+PQF   PD F I +K +   +    K +  + +R QCI+ST              
Sbjct: 1    MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDHIHLRTQCILSTTSAVTSTATSTVLG 60

Query: 1730 ------PSI----------------SNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLR 1617
                  PSI                S A T V D  KL++PS +   + +A + P TY  
Sbjct: 61   IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPDIQKLKLPSFEANPDSVAPDRPWTYTG 120

Query: 1616 MSN---EATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKS 1446
                  EA    E  +  +E                                   S+   
Sbjct: 121  AVGPPAEANTKPENSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLNDSDNVG 180

Query: 1445 ANACSGGEIFIGKNSQLLESGQA--AGITDSLESETSPLAGFSTCYET-NEHDDLEPTVX 1275
                S       ++  L + G+    G+   L        G S   ET  + DDLEP+  
Sbjct: 181  RGTLSEARTAPFESVHLAQPGETRRVGVCAELNGSEMKWTGSSLFRETLTDSDDLEPSPE 240

Query: 1274 XXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAISI-PVKTIST-RKKRPSLQEVKYS 1101
                        IAV+S RQ              A ++  VK+ ST RKKR S+Q+V YS
Sbjct: 241  ELEILQSQLSNVIAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSRKKRASVQDVDYS 300

Query: 1100 DPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARL 921
            DPLRYLRG+T  SRLLTASEEQELS G+QDLLKLERL   L ER  G+PTF QWA AA +
Sbjct: 301  DPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGV 360

Query: 920  DQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFD 741
            DQ  LR+RLNYGI CKDKMIKSN+RLVISIAK YQG GM+LQDLVQEGCRGLVRG EKFD
Sbjct: 361  DQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFD 420

Query: 740  ASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDN 561
            A+KGFKFSTYAHWWIKQAVRKSL++QSR IRLPFHMVEA+YRV+EARKQL +ENGRHP++
Sbjct: 421  ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTENGRHPND 480

Query: 560  EEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFM 381
             EVAEAAGLSMKRL  V+LTPKAPRSLDQK G NESLKPSEV+ADP+AET+E++L KQFM
Sbjct: 481  AEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEILTKQFM 540

Query: 380  KLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTN 201
            + D+EKVLDTL  REKQVV+WRFG++DGR KTLQEIGELMGVSRERIRQIES AFRKL N
Sbjct: 541  RQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 600

Query: 200  KKRTKHLQQYL 168
            KKRTK LQQY+
Sbjct: 601  KKRTKFLQQYI 611


>ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana]
            gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA
            polymerase sigma factor sigB; Short=Sigma factor B;
            Short=Sigma-B; AltName: Full=Protein ABERRANT CHLOROPLAST
            1; AltName: Full=RNA polymerase sigma factor sig1;
            Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA
            polymerase sigma factor sig2; Short=Atsig2; Short=Sigma
            factor 2; AltName: Full=RNA polymerase sigma factor sigA;
            Short=Sigma factor A; Short=Sigma-A; Flags: Precursor
            gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
            [Arabidopsis thaliana]
            gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis
            thaliana] gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis
            thaliana] gi|2597831|emb|CAA75584.1| sigma factor
            [Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1| plastid
            RNA polymerase sigma-subunit [Arabidopsis thaliana]
            gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis
            thaliana] gi|133778838|gb|ABO38759.1| At1g08540
            [Arabidopsis thaliana] gi|332190182|gb|AEE28303.1| RNA
            polymerase sigma subunit 2 [Arabidopsis thaliana]
          Length = 572

 Score =  544 bits (1401), Expect = e-152
 Identities = 317/582 (54%), Positives = 388/582 (66%), Gaps = 15/582 (2%)
 Frame = -2

Query: 1868 SCLVPQFKCQPDTFSIYSKIRPPNSAICFKY--KSSVCIRVQCIVSTAPSISNAETAVLD 1695
            SCL+PQFKC PD+FSI+ +     ++ C     K SV  + QC VST+P++    T++LD
Sbjct: 3    SCLLPQFKCPPDSFSIHFR-----TSFCAPKHNKGSVFFQPQCAVSTSPALL---TSMLD 54

Query: 1694 RMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXXXXXXX 1536
              KL++PS D  S+ L ++   TY R    +T       +A+ETL+   E          
Sbjct: 55   VAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEA 114

Query: 1535 XXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSL 1356
                              +        + +A+  S  + F  K        + AGI   L
Sbjct: 115  VALARAAVKVAKDATLFKNSNNTNLLTSSTADKRSKWDQFTEK--------ERAGILGHL 166

Query: 1355 E-SETSPLAGFSTCYETNEHD--DLEPTVXXXXXXXXXXXXXI-AVRSTRQVXXXXXXXX 1188
              S+   ++   T   +N+    DLE                  AVRSTRQ         
Sbjct: 167  AVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAK 226

Query: 1187 XXXXXAISIP-VKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQ 1014
                 A  IP VKT S+ +KKR   QEV ++DPLRYLR +TS S+LLT  EE ELS G+Q
Sbjct: 227  GLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQ 286

Query: 1013 DLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVIS 834
            DLLKLERL   L ER   +PTFAQWA+AA +DQK LRQR+++G  CKDKMIKSNIRLVIS
Sbjct: 287  DLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVIS 346

Query: 833  IAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRT 654
            IAK YQG+GM+LQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWIKQAVRKSL++QSR 
Sbjct: 347  IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRM 406

Query: 653  IRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQ 474
            IRLPFHMVEA+YRV+EARKQLYSE G+HP NEE+AEA GLSMKRL  VLL+PK PRSLDQ
Sbjct: 407  IRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQ 466

Query: 473  KFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGR 294
            K G+N++LKPSEVIADP+A T+ED+LIK+FM+ D++KVLD+L  REKQV++WRFGM+DGR
Sbjct: 467  KIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGR 526

Query: 293  TKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168
             KTLQEIGE+MGVSRER+RQIESSAFRKL NKKR  HLQQYL
Sbjct: 527  MKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568


>dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
            thaliana]
          Length = 572

 Score =  543 bits (1398), Expect = e-151
 Identities = 317/582 (54%), Positives = 387/582 (66%), Gaps = 15/582 (2%)
 Frame = -2

Query: 1868 SCLVPQFKCQPDTFSIYSKIRPPNSAICFKY--KSSVCIRVQCIVSTAPSISNAETAVLD 1695
            SCL+PQFKC PD+FSI+ +     ++ C     K SV  + QC VST+P++    T++LD
Sbjct: 3    SCLLPQFKCPPDSFSIHFR-----TSFCAPKHNKGSVFFQPQCAVSTSPALL---TSMLD 54

Query: 1694 RMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXXXXXXX 1536
              KL++PS D  S+ L ++   TY R    +T       +A+ETL+   E          
Sbjct: 55   VAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEA 114

Query: 1535 XXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSL 1356
                              +        + +A+  S  + F  K        + AGI   L
Sbjct: 115  VALARAAVKVAKDATLFKNSNYTNLLTSSTADKRSKWDQFTEK--------ERAGILGHL 166

Query: 1355 E-SETSPLAGFSTCYETNEHD--DLEPTVXXXXXXXXXXXXXI-AVRSTRQVXXXXXXXX 1188
              S+   ++   T   +N+    DLE                  AVRSTRQ         
Sbjct: 167  AVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVGLAVRSTRQTERKARRAK 226

Query: 1187 XXXXXAISIP-VKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQ 1014
                 A  IP VKT S+ +KKR   QEV ++DPLRYLR +TS S+LLT  EE ELS G+Q
Sbjct: 227  GLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQ 286

Query: 1013 DLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVIS 834
            DLLKLERL   L ER   +PTFAQWA+AA +DQK LRQR+++G  CKDKMIKSNIRLVIS
Sbjct: 287  DLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVIS 346

Query: 833  IAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRT 654
            IAK YQG+GM+LQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWIKQAVRKSL++QSR 
Sbjct: 347  IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRM 406

Query: 653  IRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQ 474
            IRLPFHMVEA+YRV+EARKQLYSE G+HP NEE+AEA GLSMKRL  VLL+PK PRSLDQ
Sbjct: 407  IRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQ 466

Query: 473  KFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGR 294
            K G+N++LKPSEVIADP+A T ED+LIK+FM+ D++KVLD+L  REKQV++WRFGM+DGR
Sbjct: 467  KIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGR 526

Query: 293  TKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168
             KTLQEIGE+MGVSRER+RQIESSAFRKL NKKR  HLQQYL
Sbjct: 527  MKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568


>ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max]
          Length = 564

 Score =  541 bits (1394), Expect = e-151
 Identities = 309/574 (53%), Positives = 386/574 (67%), Gaps = 6/574 (1%)
 Frame = -2

Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVS-TAPSISNAETAVLD 1695
            MSCL+P F C  DTF  +    P + +   K + ++C + QC++S T+PS      ++  
Sbjct: 1    MSCLLPHFNCHLDTFRTHPYALPTHLS---KTRPNLCFQPQCVLSATSPSTL---LSLEK 54

Query: 1694 RMKLQIPSLDGGS-NVLAAEGPLTYLRMSNEATIATETLINCKEXXXXXXXXXXXXXXXX 1518
            ++ L  PS    S   +AA  P   L+ + ++T++ E+L+  +E                
Sbjct: 55   KLALDAPSDPNTSWPYIAAVSPP--LQANFKSTLSAESLLTNEEAVIVAAASEALALAKA 112

Query: 1517 XXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIG--KNSQLLESGQAAGITDSLESET 1344
                          +   ++E KS  +    ++ +   K  + +E G A    +S+ +  
Sbjct: 113  AAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDGVAE---ESMGAGA 169

Query: 1343 SPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAIS 1164
              + G      + E  DLEP+              IAVRS RQ                +
Sbjct: 170  EIMEGVDVS-PSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKATTN 228

Query: 1163 IPV--KTISTRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERL 990
                    S+R+KR S+QEV YSDPLRYLR +TS SRLLT +EE +LS G+QDLLKLE++
Sbjct: 229  FTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKI 288

Query: 989  YKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGS 810
             + L ER   +PTFAQWA  A +DQK LR+RLNYGI CKDKMIKSNIRLVISIAK YQGS
Sbjct: 289  QEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGS 348

Query: 809  GMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMV 630
            GM+LQDLVQEGCRGLV+G EKFD +KGFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMV
Sbjct: 349  GMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 408

Query: 629  EASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESL 450
            EA+YRV+EARKQLYSENGR PD+EEVAEA GLSMKRLN VL+TPKAPRSL+QK GIN++L
Sbjct: 409  EATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNL 468

Query: 449  KPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIG 270
            KPSEVI+DPDAET E+ L+KQFMK D+E+ LD+L  RE+QVV+WRFGMDDGRTKTLQEIG
Sbjct: 469  KPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIG 528

Query: 269  ELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168
            E++GVSRERIRQIESSAF+KL NKKRT HLQQYL
Sbjct: 529  EMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYL 562