BLASTX nr result
ID: Rheum21_contig00008056
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Rheum21_contig00008056 (2007 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI40014.3| unnamed protein product [Vitis vinifera] 627 e-177 ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-... 625 e-176 ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-... 619 e-174 ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr... 616 e-173 gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao] 605 e-170 ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ... 596 e-167 gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis] 583 e-163 emb|CAD20831.2| sigma factor [Spinacia oleracea] 581 e-163 ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-... 568 e-159 ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-... 566 e-158 ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich... 564 e-158 ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps... 557 e-156 ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutr... 553 e-154 ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-... 551 e-154 ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A... 546 e-152 ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-... 545 e-152 ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-... 545 e-152 ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha... 544 e-152 dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SI... 543 e-151 ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-... 541 e-151 >emb|CBI40014.3| unnamed protein product [Vitis vinifera] Length = 575 Score = 627 bits (1617), Expect = e-177 Identities = 348/578 (60%), Positives = 414/578 (71%), Gaps = 10/578 (1%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVST-APSISNAETAVLD 1695 MSCL+PQFKC PDTFS + K+ I K + ++ RVQC +ST +P +S + TAVLD Sbjct: 1 MSCLLPQFKCPPDTFSTHPKLH-----ILSKNREAIYFRVQCALSTTSPPLSTSTTAVLD 55 Query: 1694 RMKLQIPSLDGGSNVLAAEGPLTYLRMSN-------EATIATETLINCKEXXXXXXXXXX 1536 KL++PSL+ SN +AA P TY+ + EAT+A ETL+ +E Sbjct: 56 IEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEA 115 Query: 1535 XXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSL 1356 KSE K A+ SG + + Q E+ + + DS+ Sbjct: 116 VALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSV 175 Query: 1355 ESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXX 1176 +ET + S T + DDLEPT+ I VRS RQV Sbjct: 176 GAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEK 235 Query: 1175 XAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLLK 1002 + + V++ ST R+KR SLQEV YSDPLRYLRG+TS SRLLTA+EE ELS G+QDLLK Sbjct: 236 ASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLK 295 Query: 1001 LERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAKK 822 LE+L + L+ER +PTFAQWA AA +DQK LR+R NYGI+CKDKMIKSNIRLVISIAK Sbjct: 296 LEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKN 355 Query: 821 YQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLP 642 YQG+GM++QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSRTIRLP Sbjct: 356 YQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415 Query: 641 FHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGI 462 FHMVEA+YRV+EARKQLYSENGRHP+NEEVAEA GLSMKRLN VLLTPKAPRSLDQK GI Sbjct: 416 FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGI 475 Query: 461 NESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTL 282 N++LKPSEVIADPDAET E+LLIKQFM+ D+EKVL++L REKQV++WR+G++DGRTKTL Sbjct: 476 NQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTL 535 Query: 281 QEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168 QEIGELMGVSRERIRQIES AFRKL NK+RTKHLQQYL Sbjct: 536 QEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL 573 >ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera] Length = 578 Score = 625 bits (1611), Expect = e-176 Identities = 348/580 (60%), Positives = 415/580 (71%), Gaps = 12/580 (2%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICF--KYKSSVCIRVQCIVST-APSISNAETAV 1701 MSCL+PQFKC PDTFS + K+ +C K + ++ RVQC +ST +P +S + TAV Sbjct: 1 MSCLLPQFKCPPDTFSTHPKLH----ILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAV 56 Query: 1700 LDRMKLQIPSLDGGSNVLAAEGPLTYLRMSN-------EATIATETLINCKEXXXXXXXX 1542 LD KL++PSL+ SN +AA P TY+ + EAT+A ETL+ +E Sbjct: 57 LDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAA 116 Query: 1541 XXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITD 1362 KSE K A+ SG + + Q E+ + + D Sbjct: 117 EAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGD 176 Query: 1361 SLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXX 1182 S+ +ET + S T + DDLEPT+ I VRS RQV Sbjct: 177 SVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAA 236 Query: 1181 XXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDL 1008 + + V++ ST R+KR SLQEV YSDPLRYLRG+TS SRLLTA+EE ELS G+QDL Sbjct: 237 EKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDL 296 Query: 1007 LKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIA 828 LKLE+L + L+ER +PTFAQWA AA +DQK LR+R NYGI+CKDKMIKSNIRLVISIA Sbjct: 297 LKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIA 356 Query: 827 KKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIR 648 K YQG+GM++QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSRTIR Sbjct: 357 KNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 416 Query: 647 LPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKF 468 LPFHMVEA+YRV+EARKQLYSENGRHP+NEEVAEA GLSMKRLN VLLTPKAPRSLDQK Sbjct: 417 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKI 476 Query: 467 GINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTK 288 GIN++LKPSEVIADPDAET E+LLIKQFM+ D+EKVL++L REKQV++WR+G++DGRTK Sbjct: 477 GINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTK 536 Query: 287 TLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168 TLQEIGELMGVSRERIRQIES AFRKL NK+RTKHLQQYL Sbjct: 537 TLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL 576 >ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus sinensis] Length = 605 Score = 619 bits (1597), Expect = e-174 Identities = 352/586 (60%), Positives = 411/586 (70%), Gaps = 13/586 (2%) Frame = -2 Query: 1880 NQKMSCLVPQFKCQPDTFSIYSKI---RPPNSAICFKYKSSVCIRVQCIVST-APSISNA 1713 N+ MSCL+PQFKCQPDTFSI+ + +S+ K K +C R C++ST +PS S A Sbjct: 21 NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTA 80 Query: 1712 ETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXX 1554 T VLD KL++PSL+ SN +AA TY +T +ATETL + + Sbjct: 81 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 140 Query: 1553 XXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAA 1374 H K ++K A + S + +QL E +A+ Sbjct: 141 ASAEAVALARAAVKVAKDAALMVNH-HNSAKPKSKPAISLSA-DTNTSMWAQLTERERAS 198 Query: 1373 GITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXX 1194 I DS+ E +P +S N+ DLEPT IAVRS RQ Sbjct: 199 IIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258 Query: 1193 XXXXXXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVG 1020 A ++ VK+ ST R+KRPS+QEV YSDPLRYLR +TS SRLLTA+EE +LS G Sbjct: 259 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318 Query: 1019 VQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLV 840 +QDLLKLE L + L ER G PTFAQWA AA +DQ+ LR+RLNYGI CKDKMI SNIRLV Sbjct: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378 Query: 839 ISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQS 660 ISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QS Sbjct: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438 Query: 659 RTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSL 480 RTIRLPFHMVEA+YRV+EARKQLYSENGRHP+NEEVAEA GLSMKRL+ VLLTPKAPRSL Sbjct: 439 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSL 498 Query: 479 DQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDD 300 DQKFGIN++LKPSEVIADP+AET EDLLIK+FMK D+EKVLDTL RE+QVV+WRFG++D Sbjct: 499 DQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 558 Query: 299 GRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162 GR KTLQEIGELMGVSRERIRQIESSAFRKL NKKRTKHL QY T Sbjct: 559 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604 >ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina] gi|557539534|gb|ESR50578.1| hypothetical protein CICLE_v10030998mg [Citrus clementina] Length = 605 Score = 616 bits (1589), Expect = e-173 Identities = 350/586 (59%), Positives = 410/586 (69%), Gaps = 13/586 (2%) Frame = -2 Query: 1880 NQKMSCLVPQFKCQPDTFSIYSKI---RPPNSAICFKYKSSVCIRVQCIVST-APSISNA 1713 N+ MSCL+PQFKCQPDTFSI+ + +S+ K K +C R C++ST +PS S A Sbjct: 21 NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTA 80 Query: 1712 ETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXX 1554 T VLD KL++PSL+ SN +AA TY +T +ATETL + + Sbjct: 81 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA 140 Query: 1553 XXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAA 1374 H K ++K A + S + +QL E +A+ Sbjct: 141 ASAEAVALARAAVKVAKDAALMVNH-HNSAKPKSKPAISLSA-DTSTSMWAQLTERERAS 198 Query: 1373 GITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXX 1194 I DS+ E +P +S N+ DLEPT IAVRS RQ Sbjct: 199 IIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258 Query: 1193 XXXXXXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVG 1020 A ++ VK+ ST R+KRPS+QEV YSDPLRYLR +TS SRLLTA+EE +LS G Sbjct: 259 TRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318 Query: 1019 VQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLV 840 +QDLLKLE L + L ER G PTFAQWA AA +DQ+ LR+RLNYGI CKDKMI SNIRLV Sbjct: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378 Query: 839 ISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQS 660 ISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QS Sbjct: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438 Query: 659 RTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSL 480 RTIRLPFHMVEA+YRV+EARKQLYSENGRHP+NEEVA+A GLSMKRL+ VLL PKAPRSL Sbjct: 439 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAPRSL 498 Query: 479 DQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDD 300 DQKFGIN++LKPSEVIADP+AET EDLLIK+FMK D+EKVLDTL RE+QVV+WRFG++D Sbjct: 499 DQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLED 558 Query: 299 GRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162 GR KTLQEIGELMGVSRERIRQIESSAFRKL NKKRTKHL QY T Sbjct: 559 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604 >gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao] Length = 623 Score = 605 bits (1559), Expect = e-170 Identities = 353/621 (56%), Positives = 411/621 (66%), Gaps = 51/621 (8%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIR-----------------------------PPNSAICF- 1782 MSCL+PQFKCQPDTFSI + P S + F Sbjct: 1 MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60 Query: 1781 ---KYKSSVCIRVQCIVST-APSISNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYL-- 1620 K+K +C R QC++ST + S S TAVLD KL++PS + N +A + P TY+ Sbjct: 61 VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGA 120 Query: 1619 -----RMSNEATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSE 1455 S AT+AT+ L+ E A K+E Sbjct: 121 TGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTE 180 Query: 1454 AKSANACSGGEIFIGKNSQLLESGQAAGITDSLESETSPLAGFSTCYETNEHDDLEPTVX 1275 KS + + + F K + E+ +A I DS E+ S T E D+LEPT Sbjct: 181 MKSGVSFAT-DSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNE 239 Query: 1274 XXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAISI-PVKTIST-RKKRPSLQEVKYS 1101 IAVRS RQ A ++ VK+ ST RK+R +LQ+V YS Sbjct: 240 ELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYS 299 Query: 1100 DPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARL 921 DPLRYLRG+TS SRLLTA+EE ELS G+QDLLKLERL + L ER G+PTFAQWA AA + Sbjct: 300 DPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGV 359 Query: 920 DQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFD 741 DQK LR RLNYG+ CKDKMIKSNIRLVISIAK YQG+GM+LQDLVQEGCRGLVRG EKFD Sbjct: 360 DQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 419 Query: 740 ASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDN 561 ASKGFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMVEA+YRV+EARKQLYSENGRHPDN Sbjct: 420 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDN 479 Query: 560 EEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPS--------EVIADPDAETTE 405 EEVAEA GLSMKRL VLLTPKAPRSLDQK GIN++LKPS EVIADP+AET E Sbjct: 480 EEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAE 539 Query: 404 DLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIES 225 D+LIKQFM+ D+EKVLD+L+QRE+QV++WRFGM+DGR KTLQEIGELMGVSRERIRQIES Sbjct: 540 DMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIES 599 Query: 224 SAFRKLTNKKRTKHLQQYLFT 162 AFRKL NKKRTKHLQQYL + Sbjct: 600 CAFRKLKNKKRTKHLQQYLLS 620 >ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis] gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis] Length = 569 Score = 596 bits (1536), Expect = e-167 Identities = 346/574 (60%), Positives = 398/574 (69%), Gaps = 6/574 (1%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIRP---PNSAICFKYKSSVCIRVQCIVST-APSISNAETA 1704 MSCL+PQFKCQPDTFSI+ + N K + + R QCI+ST +PS S TA Sbjct: 2 MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTS---TA 58 Query: 1703 VLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEATIATETLINCKEXXXXXXXXXXXXXX 1524 VLD KL++PS + S+ +A P TY + T+ATETLI E Sbjct: 59 VLDLEKLRLPSFEAPSDSIAPNSPWTYATFGS--TLATETLITSDEAVIAAAAAEAVALA 116 Query: 1523 XXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSLESET 1344 ++E+K S I + Q E+ +A I DS+ +ET Sbjct: 117 RAAVKVAKDAALLVKNFPSAETESKLT---SPSTIDASRWPQFTETERARIIGDSVATET 173 Query: 1343 SPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAIS 1164 P S E D LE T IAVRS RQ A S Sbjct: 174 GPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVEKAASS 233 Query: 1163 I-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERL 990 + VK ST +KKR SLQEV YSDPLRYLRG+TS SRLLTASEE ELS +QDLLKLERL Sbjct: 234 VVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLLKLERL 293 Query: 989 YKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGS 810 + L ER G+PTFAQWA AA +DQ+ LR+R+N+G CKDKMIKSNIRLVISIAK YQG+ Sbjct: 294 QEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGA 353 Query: 809 GMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMV 630 GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMV Sbjct: 354 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 413 Query: 629 EASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESL 450 EA+YRV+EARKQLYSENGRHPD+EEVAEAAGLSMKRL+ VLLTPKAPRSLDQK G+N L Sbjct: 414 EATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDL 473 Query: 449 KPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIG 270 KPSEVIADP+AET E+LL+KQFMK D+EKVL+TL RE QVV+WRFG++DGR KTLQEIG Sbjct: 474 KPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIG 533 Query: 269 ELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168 E+MGVSRERIRQIESSAFRKL NKKRTK L+QYL Sbjct: 534 EIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYL 567 >gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis] Length = 574 Score = 583 bits (1502), Expect = e-163 Identities = 335/586 (57%), Positives = 401/586 (68%), Gaps = 16/586 (2%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIRP-----PNSAICFKYKSSVCIRVQCIVST-APSISNAE 1710 MSCL+PQF C+PDTFS R PNS + + QC++ST +PS S Sbjct: 1 MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHL--PKARDINSLAQCVLSTTSPSTSVGA 58 Query: 1709 TAVLDRMKLQIPSLDGGSNVLAAEGPLTY-------LRMSNEATIATETLINCKEXXXXX 1551 T VL KL+ PSLD S + + P TY + + EAT+ATETL+ +E Sbjct: 59 TYVLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAA 118 Query: 1550 XXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAG 1371 V ++E+ S + ++ +++ QAA Sbjct: 119 AAAEAVTLAKAAVKVAKDAALL--VRPSTRAESIS---------LVSSEARNIKTAQAAS 167 Query: 1370 -ITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXX 1194 + DSL +E + + E +DL+PT IAVRS RQ Sbjct: 168 RVRDSLRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKR 227 Query: 1193 XXXXXXXAISI-PVKTIS-TRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVG 1020 A ++ VK+ S +RKKR S+Q+V +SDPLRYLR +TS SRLLTA+EE ELS G Sbjct: 228 DRAAEKAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEG 287 Query: 1019 VQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLV 840 +QDLLKLE+L + L ER G PTFAQWA AA +DQK LR+R+NYGI CKDKMIKSN+RLV Sbjct: 288 IQDLLKLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLV 347 Query: 839 ISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQS 660 ISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QS Sbjct: 348 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 407 Query: 659 RTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSL 480 RTIRLPFHMVEA+YRV+EARKQLYSENGR P++EEVAEA GLSMKRL VLLTPKAPRSL Sbjct: 408 RTIRLPFHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSL 467 Query: 479 DQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDD 300 +QK GIN++LKPSE+IADPDAET ED+L +QFMK D++KVLD+L QREKQV++WRFGMDD Sbjct: 468 EQKIGINQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDD 527 Query: 299 GRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162 GR KTLQEIGELMGVSRERIRQIES AFRKL NKKRTKHLQQYL + Sbjct: 528 GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573 >emb|CAD20831.2| sigma factor [Spinacia oleracea] Length = 575 Score = 581 bits (1497), Expect = e-163 Identities = 328/584 (56%), Positives = 398/584 (68%), Gaps = 15/584 (2%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAIC----FKYKSSVCIRVQCIVSTAPS-ISNAET 1707 M+CL+PQFKCQPDTFSI S + PP+++ + + VC R QC VST P + AET Sbjct: 1 MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAET 60 Query: 1706 AVLDRMKLQIPSLDGGSNVLAAEGPLTYL-------RMSNEATIATETLINCKEXXXXXX 1548 ++ D KL++P ++ SN L+A T+L + + + + LI +E Sbjct: 61 SIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAAA 120 Query: 1547 XXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGI 1368 A Q K +K G+ +QLLE+ Q + Sbjct: 121 AAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLE-----GQSLHFSGAQLLENEQVGSM 175 Query: 1367 TDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQ---VXXXXX 1197 + SE S G + +E D+EPT+ I VRSTRQ Sbjct: 176 RNFEGSENSLREGDTV----SEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRAR 231 Query: 1196 XXXXXXXXAISIPVKTISTRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGV 1017 +S+ V + ++RKKR S+QEV YSDPLRYLRG+T+ SRLLT+SEE ELS G+ Sbjct: 232 AAEKVASNVVSVKVGS-NSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGI 290 Query: 1016 QDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVI 837 QDLLKLE+L+ LK R P+F QWA AA +DQ+ LR+RLN+G CKDKMIKSN+RLVI Sbjct: 291 QDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVI 350 Query: 836 SIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSR 657 SIAK YQGSGM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSR Sbjct: 351 SIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 410 Query: 656 TIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLD 477 TIRLPFHMVEA+YRV+EARKQL SENG+ P+NEEVAEA GLSMKRL VL+TPKAPRSLD Sbjct: 411 TIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLD 470 Query: 476 QKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDG 297 QK G N +LKPSEVIADP+AET EDLL KQFM+ D+EKVLDTL+ REKQV++WRFG++DG Sbjct: 471 QKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDG 530 Query: 296 RTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLF 165 R KTLQEIGELMGVSRERIRQIESSAFRKL NKK+T +LQQY+F Sbjct: 531 RMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYMF 574 >ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus sinensis] Length = 525 Score = 568 bits (1465), Expect = e-159 Identities = 323/525 (61%), Positives = 372/525 (70%), Gaps = 9/525 (1%) Frame = -2 Query: 1709 TAVLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXX 1551 T VLD KL++PSL+ SN +AA TY +T +ATETL + + Sbjct: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 61 Query: 1550 XXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAG 1371 H K ++K A + S + +QL E +A+ Sbjct: 62 SAEAVALARAAVKVAKDAALMVNH-HNSAKPKSKPAISLSA-DTNTSMWAQLTERERASI 119 Query: 1370 ITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXX 1191 I DS+ E +P +S N+ DLEPT IAVRS RQ Sbjct: 120 IGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 179 Query: 1190 XXXXXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGV 1017 A ++ VK+ ST R+KRPS+QEV YSDPLRYLR +TS SRLLTA+EE +LS G+ Sbjct: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239 Query: 1016 QDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVI 837 QDLLKLE L + L ER G PTFAQWA AA +DQ+ LR+RLNYGI CKDKMI SNIRLVI Sbjct: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299 Query: 836 SIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSR 657 SIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL++QSR Sbjct: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359 Query: 656 TIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLD 477 TIRLPFHMVEA+YRV+EARKQLYSENGRHP+NEEVAEA GLSMKRL+ VLLTPKAPRSLD Sbjct: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLD 419 Query: 476 QKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDG 297 QKFGIN++LKPSEVIADP+AET EDLLIK+FMK D+EKVLDTL RE+QVV+WRFG++DG Sbjct: 420 QKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDG 479 Query: 296 RTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162 R KTLQEIGELMGVSRERIRQIESSAFRKL NKKRTKHL QY T Sbjct: 480 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524 >ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus] gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus] Length = 580 Score = 566 bits (1459), Expect = e-158 Identities = 324/594 (54%), Positives = 397/594 (66%), Gaps = 24/594 (4%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSI---------------------YSKIRPPNSAICFKYKSSVCIR 1755 MSCL+PQFKC P+TFSI Y+K+R P+S +R Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHS-----------LR 49 Query: 1754 VQCIVSTA-PSISNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLRMSNEATIATETLI 1578 QCI+S A P S LD +L++P D ++ ++ E +YL + E+++A+ TL+ Sbjct: 50 TQCILSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLG-AVESSLAS-TLL 107 Query: 1577 NCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQ 1398 +E A+ ++ KS ++ + K +Q Sbjct: 108 TSEEASIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHF-KWAQ 166 Query: 1397 LLESGQAAGITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTR 1218 +ES +A I + + P+ G + T E DD+EPT I V+S R Sbjct: 167 FMESERADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKR 226 Query: 1217 QVXXXXXXXXXXXXXAISIPV--KTISTRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTAS 1044 Q S+ S+RKKR S+QEV YSDPLRYLR +T+ SRLLTA+ Sbjct: 227 QTERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTAT 286 Query: 1043 EEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKM 864 EE ELS G+QDLLKLERL + L ER EPTFAQWA AA ++Q+ LR+RLNYG CKDKM Sbjct: 287 EELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKM 346 Query: 863 IKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAV 684 IKSNIRLVISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAV Sbjct: 347 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 406 Query: 683 RKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLL 504 RK L++QSRTIRLPFHMVEA+YRV+EARKQL ENGRHPD++E+AEAAGLSMKRL VL+ Sbjct: 407 RKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLM 466 Query: 503 TPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVV 324 TPKAPRSL+QK GIN++LKPSEVI+DP+AET ED+LIKQFMK D+EKVLD+L REKQV+ Sbjct: 467 TPKAPRSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVI 526 Query: 323 KWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYLFT 162 +WRFGM+DGR KTLQEIGE+MGVSRERIRQIES AFRKL NKKRTKHLQQY+ + Sbjct: 527 RWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580 >ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa] gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein [Populus trichocarpa] Length = 567 Score = 564 bits (1454), Expect = e-158 Identities = 329/577 (57%), Positives = 393/577 (68%), Gaps = 9/577 (1%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTAPSISNAETAVLDR 1692 MSCL+PQFKCQPDTFS++ + + + QC++S+A + TAVLD Sbjct: 1 MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLP-------QCVLSSA----SPSTAVLDL 49 Query: 1691 MKLQIPSLDGGSNVLAAEGPLTYL-------RMSNEATIATETLINCKEXXXXXXXXXXX 1533 KL++PSL+ S+ ++A P TY+ + ++A ETLI E Sbjct: 50 EKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAV 109 Query: 1532 XXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSLE 1353 A K E K A S + F S L E +A I DS+ Sbjct: 110 ALARAAVKVAKDAAEMAKNYSFMKKETKIPIA-STTDSFSSMWSLLTEKERADIIGDSVS 168 Query: 1352 SETSPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXX 1173 +ET +S Y T E+D LEPT IAVRS RQ Sbjct: 169 AETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEKA 228 Query: 1172 AISI-PVKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKL 999 A ++ VK+ ST +KKR LQEV SDPLR+ RG++S SRLL+A+EE ELS G+QDLLKL Sbjct: 229 AANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKL 288 Query: 998 ERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKY 819 ER+ + LKER GEP+FAQWA AA +DQ LR+RLNYGI CKDKMIKSN+RLVISIAK Y Sbjct: 289 ERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNY 348 Query: 818 QGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPF 639 QG+GM+LQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL+++SRTIRLPF Sbjct: 349 QGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPF 408 Query: 638 HMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGIN 459 HMV+A+YRV+EARKQLYSENGRHPD++EVAEAAGLSMKRL+ VLLTPKAPRSLDQK G N Sbjct: 409 HMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFN 468 Query: 458 ESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQ 279 LK SEV ADP+AET EDLL+K+FMK D+ KVL +L+ RE QVV+WRFGM+DGR KTLQ Sbjct: 469 MDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQ 528 Query: 278 EIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168 EIGELMGVSRER+RQIE SAFRKL NK RTK L+QY+ Sbjct: 529 EIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYM 565 >ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella] gi|482575837|gb|EOA40024.1| hypothetical protein CARUB_v10008711mg [Capsella rubella] Length = 571 Score = 557 bits (1435), Expect = e-156 Identities = 320/579 (55%), Positives = 394/579 (68%), Gaps = 12/579 (2%) Frame = -2 Query: 1868 SCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTAPSISNAETAVLDRM 1689 SCL+PQFKCQPD+FSI+ + + ++ + K V + QC V+T+P++ T+ LD Sbjct: 3 SCLLPQFKCQPDSFSIHFRT---SFSVSKQNKGPVFFQPQCAVTTSPALL---TSTLDVA 56 Query: 1688 KLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXXXXXXXXX 1530 KL++PS D S+ ++ TY +T +A+ETL+ E Sbjct: 57 KLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVA 116 Query: 1529 XXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSLE- 1353 + + +A+ S + F K + AGI L Sbjct: 117 LARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFTEK--------ERAGILGHLAV 168 Query: 1352 SETSPLAGFSTCYETNEHD--DLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXX 1179 S+T ++ ST +N+ DL + +AVRSTRQ Sbjct: 169 SDTGIVSDKSTAPASNKESSADLISEIQEVELVEEQPAASLAVRSTRQTERKARRAKGLE 228 Query: 1178 XXAISIP-VKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLL 1005 A +IP VKT S+ RKKR QEV ++DPLRYLR +TS S+LLT EE ELS G+QDLL Sbjct: 229 KSASAIPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLL 288 Query: 1004 KLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAK 825 KLERL L ER +PTF+QWA+AA +DQK LR+R+NYG QCKDKMIKSNIRLVISIAK Sbjct: 289 KLERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAK 348 Query: 824 KYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRL 645 YQG+GM+LQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWIKQAVRKSL++QSR IRL Sbjct: 349 NYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRL 408 Query: 644 PFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFG 465 PFHMVEA+YRV+EARKQLY+E GRHP+NEEVAEA GLSMKRL VLL+PK PRSLDQK G Sbjct: 409 PFHMVEATYRVKEARKQLYTEKGRHPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIG 468 Query: 464 INESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKT 285 +N++LKPSEVIADP+AET+ED+LIKQFM+ D++KVLD+L REKQV++WRFGM+DGR KT Sbjct: 469 MNQNLKPSEVIADPEAETSEDILIKQFMREDLDKVLDSLGTREKQVIRWRFGMEDGRMKT 528 Query: 284 LQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168 LQEIGELMGVSRER+RQIESSAFRKL NKKR+ HLQQYL Sbjct: 529 LQEIGELMGVSRERVRQIESSAFRKLKNKKRSNHLQQYL 567 >ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum] gi|557095448|gb|ESQ36030.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum] Length = 579 Score = 553 bits (1425), Expect = e-154 Identities = 318/581 (54%), Positives = 389/581 (66%), Gaps = 14/581 (2%) Frame = -2 Query: 1868 SCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTAPSISNAETAVLDRM 1689 SCL+PQFKCQPD+FSI+ K + ++ K SV + QC VST+P + T++LD Sbjct: 3 SCLLPQFKCQPDSFSIHFKT---SYSLSKHNKGSVFFQPQCAVSTSPPLL---TSMLDVA 56 Query: 1688 KLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXXXXXXXXX 1530 KL++PS D S+ ++ TY +T +A+ETL+ E Sbjct: 57 KLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVA 116 Query: 1529 XXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAA---GITDS 1359 + + + +A+ S + F K + A G+ Sbjct: 117 LARAAVKVAKDATSFRNSYNTKVVVSSAADKRSKWDQFTEKERAGILGHLAVSDTGVVSD 176 Query: 1358 LESETSPLAGFSTCYETNEHD--DLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXX 1185 + +P + + N DL+ AVRSTRQ Sbjct: 177 KSTAPAPAPAPAPAPDCNNESSGDLKSEKQEVELLEEQLSVSSAVRSTRQTERKARRAKG 236 Query: 1184 XXXXAISIP-VKT-ISTRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQD 1011 A S+ VKT S+RKKR QEV ++DPLRYLR +TS S+LLTA EEQELS G+QD Sbjct: 237 LEKTASSMQSVKTGSSSRKKRAPSQEVDHNDPLRYLRMTTSSSKLLTAREEQELSEGIQD 296 Query: 1010 LLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISI 831 LLKLERL L ER +PTFAQWA+AA +DQK LR+R+NYG QCKD+MIKSNIRLVISI Sbjct: 297 LLKLERLQAELTERCGHQPTFAQWASAAGVDQKSLRKRINYGTQCKDRMIKSNIRLVISI 356 Query: 830 AKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTI 651 AK YQG+GM+LQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWIKQAVRKSL++QSR I Sbjct: 357 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMI 416 Query: 650 RLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQK 471 RLPFHMVEA+YRV+EARKQLYSE G+ P+NEEVAEA GLSMKRL VLL+PK PRSLDQK Sbjct: 417 RLPFHMVEATYRVKEARKQLYSETGKQPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQK 476 Query: 470 FGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRT 291 GIN++LKPSEVIADP+AET+ED+LIKQFM+ D++KVLD+L+ REKQV++WRFGM+DGR Sbjct: 477 IGINQNLKPSEVIADPEAETSEDILIKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRM 536 Query: 290 KTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168 KTLQEIGE MGVSRER+RQIESSAFRKL NKKR+ HLQQYL Sbjct: 537 KTLQEIGETMGVSRERVRQIESSAFRKLKNKKRSNHLQQYL 577 >ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca subsp. vesca] Length = 616 Score = 551 bits (1419), Expect = e-154 Identities = 328/608 (53%), Positives = 390/608 (64%), Gaps = 9/608 (1%) Frame = -2 Query: 1958 HPLSSPALRPSYVEIQGILATCDRENNQKMSCLVPQFKCQPDTFSIYSKIRPPNSAICFK 1779 H SS + S++ + + N K + Q +K R P S C + Sbjct: 20 HASSSSVICCSFLTPLSVPHPKPKNKNNKKKKKLTQICTDHIAVGFQAKARYPIS-FCAQ 78 Query: 1778 YKSSVCIRVQCIVSTAPSISNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYL------- 1620 Y SS ST+ S S +LD + +PSL S+ L P TY Sbjct: 79 YMSS---------STSHSTSTPTATLLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPT 129 Query: 1619 RMSNEATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSAN 1440 + A +ATETL+ +E K E S Sbjct: 130 EANYGAALATETLLTSEEAVIAAAAAEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPV 189 Query: 1439 ACSGGEIFIGKNSQLLESGQAAGITDSLESETSPLAGFSTCYETNEHDDLEPTVXXXXXX 1260 +C G F +Q LE+ I DS+ SET+ + NE +++EP Sbjct: 190 SC-GTSAFHINWAQHLETEPTLRIGDSMASETALVEDHFLQIAINESENVEPANEEFELL 248 Query: 1259 XXXXXXXIAVRSTRQVXXXXXXXXXXXXXAISI-PVKTIST-RKKRPSLQEVKYSDPLRY 1086 IA RS+RQ A SI VK+ ST RKKR SLQ+V +SDPLRY Sbjct: 249 QEQLSNGIAARSSRQTERKARRTRAAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRY 308 Query: 1085 LRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARLDQKIL 906 LR +T SRLLTA+EE ELS G+Q+LLKLE+L + L +R +PTFAQWA AA +DQK L Sbjct: 309 LRATTHTSRLLTANEEIELSEGIQELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTL 368 Query: 905 RQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGF 726 R+R+NYGI CKDKMIKSNIRLVISIAK YQG+GM+LQDLVQEGCRGLVRG EKFDASKGF Sbjct: 369 RKRVNYGIMCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 428 Query: 725 KFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAE 546 KFSTYAHWWIKQAVRKSL++QSRTIRLPFHMVEA+YRVREA+KQLYS NGRHP++EEVAE Sbjct: 429 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAE 488 Query: 545 AAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIE 366 A GLSMKRL VLLTPKAPRSL+QK GIN++LKPS+VIADPDAET EDLL+K+FMK D+E Sbjct: 489 ATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLE 548 Query: 365 KVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTK 186 KVLD+L REKQV++WRFGM+DGR KTLQEIGELMGVSRERIRQIES AFRKL NKKRTK Sbjct: 549 KVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 608 Query: 185 HLQQYLFT 162 HLQQY+ + Sbjct: 609 HLQQYVLS 616 >ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda] gi|548831956|gb|ERM94758.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda] Length = 570 Score = 546 bits (1408), Expect = e-152 Identities = 308/550 (56%), Positives = 375/550 (68%), Gaps = 12/550 (2%) Frame = -2 Query: 1775 KSSVCIRVQCIVSTAPSISNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYL-------R 1617 + + C + QC+ STA T V+D K+++PSL G S ++ GPLTY+ + Sbjct: 29 REATCFQTQCVSSTA-------TVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTIGSQKK 81 Query: 1616 MSNEATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANA 1437 EA + TE+L+ +E +S+ K + Sbjct: 82 TDFEAALVTESLLKSEEAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSD-KVDDF 140 Query: 1436 CSGGEIFIGKNSQLLESGQAAGITDSLESETSPLAGFSTCYET--NEHDDLEPTVXXXXX 1263 S +I + ++L E + + S + P + + NE D + Sbjct: 141 PSEADILRLQRARLTEMERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRENILEA 200 Query: 1262 XXXXXXXXIAVRSTRQVXXXXXXXXXXXXXA---ISIPVKTISTRKKRPSLQEVKYSDPL 1092 +AVRS RQ A I++ + T S RK+ P LQE+ YSDPL Sbjct: 201 LQLQHSQRVAVRSRRQTERRARRAKGVEKAAANAITVKLGTTSRRKRAP-LQEIDYSDPL 259 Query: 1091 RYLRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARLDQK 912 RYLRG+T+ ++LLTA+EE ELS G+QDLLKLE+L+K L ER GEPTF QWA AA +DQK Sbjct: 260 RYLRGTTNSTKLLTATEELELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQK 319 Query: 911 ILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASK 732 LR+RL+YG CKDKMIKSNIRLVISIAK YQG G+S+QDLVQEGCRGLVRG EKFDASK Sbjct: 320 ALRRRLSYGTHCKDKMIKSNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKFDASK 379 Query: 731 GFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDNEEV 552 GFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMV+A+YRVREA KQLYSENGRHP++EEV Sbjct: 380 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPNDEEV 439 Query: 551 AEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFMKLD 372 AEA GLSMKRL VLLTPKAPRSLDQK GIN++LKPSEVI+DP+AET EDLL+KQFMK D Sbjct: 440 AEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQFMKQD 499 Query: 371 IEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTNKKR 192 +EKVL+TL REKQVV+WRFG++DGR KTLQEIGELMGVSRERIRQIESSAFRKL NKKR Sbjct: 500 LEKVLNTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKR 559 Query: 191 TKHLQQYLFT 162 TK+L+QYL + Sbjct: 560 TKNLRQYLLS 569 >ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum lycopersicum] Length = 613 Score = 545 bits (1405), Expect = e-152 Identities = 325/611 (53%), Positives = 384/611 (62%), Gaps = 43/611 (7%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTA------------- 1731 MS L+PQF PD F I +K + + K + S+ +R QCI+ST Sbjct: 1 MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDSIHLRTQCILSTTSAVTSTATSTVLG 60 Query: 1730 ------PSI----------------SNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLR 1617 PSI S A T V KL++PS + + +A + P TY Sbjct: 61 IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPGIQKLKLPSFEANPDSVAPDRPWTYTG 120 Query: 1616 MSN---EATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKS 1446 EA E + +E + S+ Sbjct: 121 AVGPPAEANTKPEDSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLKDSDNVG 180 Query: 1445 ANACSGGEIFIGKNSQLLESGQAAGITDSLESETSPL--AGFSTCYET-NEHDDLEPTVX 1275 S ++ L + G+ G+ E S + G S +T + DDLEP+ Sbjct: 181 RGTLSEARTAPFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDLEPSHE 240 Query: 1274 XXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAISI-PVKTIST-RKKRPSLQEVKYS 1101 IAV+S RQ A ++ VK+ ST RKKR S+Q+V YS Sbjct: 241 ELEILQSQLSNVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQDVDYS 300 Query: 1100 DPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARL 921 DPLRYLRG+T SRLLTASEEQELS G+QDLLKLERL L ER G+PTF QWA AA + Sbjct: 301 DPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGV 360 Query: 920 DQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFD 741 DQ LR+RLNYGI CKDKMIKSN+RLVISIAK YQG GM+LQDLVQEGCRGLVRG EKFD Sbjct: 361 DQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFD 420 Query: 740 ASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDN 561 A+KGFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMVEA+YRV+EARKQL +ENGRHP++ Sbjct: 421 ATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGRHPND 480 Query: 560 EEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFM 381 EVAEA GLSMKRL V+LTPKAPRSLDQK G NESLKPSEV+ADPDAET+E++L KQFM Sbjct: 481 AEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILTKQFM 540 Query: 380 KLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTN 201 + D+EKVLDTL REKQVV+WRFG++DGR KTLQEIGELMGVSRERIRQIES AFRKL N Sbjct: 541 RQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 600 Query: 200 KKRTKHLQQYL 168 KKRTK LQQY+ Sbjct: 601 KKRTKFLQQYI 611 >ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum] Length = 613 Score = 545 bits (1404), Expect = e-152 Identities = 324/611 (53%), Positives = 381/611 (62%), Gaps = 43/611 (7%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVSTA------------- 1731 MS L+PQF PD F I +K + + K + + +R QCI+ST Sbjct: 1 MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDHIHLRTQCILSTTSAVTSTATSTVLG 60 Query: 1730 ------PSI----------------SNAETAVLDRMKLQIPSLDGGSNVLAAEGPLTYLR 1617 PSI S A T V D KL++PS + + +A + P TY Sbjct: 61 IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPDIQKLKLPSFEANPDSVAPDRPWTYTG 120 Query: 1616 MSN---EATIATETLINCKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVEQDEKSEAKS 1446 EA E + +E S+ Sbjct: 121 AVGPPAEANTKPENSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLNDSDNVG 180 Query: 1445 ANACSGGEIFIGKNSQLLESGQA--AGITDSLESETSPLAGFSTCYET-NEHDDLEPTVX 1275 S ++ L + G+ G+ L G S ET + DDLEP+ Sbjct: 181 RGTLSEARTAPFESVHLAQPGETRRVGVCAELNGSEMKWTGSSLFRETLTDSDDLEPSPE 240 Query: 1274 XXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAISI-PVKTIST-RKKRPSLQEVKYS 1101 IAV+S RQ A ++ VK+ ST RKKR S+Q+V YS Sbjct: 241 ELEILQSQLSNVIAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSRKKRASVQDVDYS 300 Query: 1100 DPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERLYKALKERGHGEPTFAQWATAARL 921 DPLRYLRG+T SRLLTASEEQELS G+QDLLKLERL L ER G+PTF QWA AA + Sbjct: 301 DPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAAAAGV 360 Query: 920 DQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGSGMSLQDLVQEGCRGLVRGTEKFD 741 DQ LR+RLNYGI CKDKMIKSN+RLVISIAK YQG GM+LQDLVQEGCRGLVRG EKFD Sbjct: 361 DQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFD 420 Query: 740 ASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMVEASYRVREARKQLYSENGRHPDN 561 A+KGFKFSTYAHWWIKQAVRKSL++QSR IRLPFHMVEA+YRV+EARKQL +ENGRHP++ Sbjct: 421 ATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTENGRHPND 480 Query: 560 EEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESLKPSEVIADPDAETTEDLLIKQFM 381 EVAEAAGLSMKRL V+LTPKAPRSLDQK G NESLKPSEV+ADP+AET+E++L KQFM Sbjct: 481 AEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEILTKQFM 540 Query: 380 KLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIGELMGVSRERIRQIESSAFRKLTN 201 + D+EKVLDTL REKQVV+WRFG++DGR KTLQEIGELMGVSRERIRQIES AFRKL N Sbjct: 541 RQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 600 Query: 200 KKRTKHLQQYL 168 KKRTK LQQY+ Sbjct: 601 KKRTKFLQQYI 611 >ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana] gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor B; Short=Sigma-B; AltName: Full=Protein ABERRANT CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor sig1; Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA polymerase sigma factor sig2; Short=Atsig2; Short=Sigma factor 2; AltName: Full=RNA polymerase sigma factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags: Precursor gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana] gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana] gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana] gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana] gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana] gi|332190182|gb|AEE28303.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana] Length = 572 Score = 544 bits (1401), Expect = e-152 Identities = 317/582 (54%), Positives = 388/582 (66%), Gaps = 15/582 (2%) Frame = -2 Query: 1868 SCLVPQFKCQPDTFSIYSKIRPPNSAICFKY--KSSVCIRVQCIVSTAPSISNAETAVLD 1695 SCL+PQFKC PD+FSI+ + ++ C K SV + QC VST+P++ T++LD Sbjct: 3 SCLLPQFKCPPDSFSIHFR-----TSFCAPKHNKGSVFFQPQCAVSTSPALL---TSMLD 54 Query: 1694 RMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXXXXXXX 1536 KL++PS D S+ L ++ TY R +T +A+ETL+ E Sbjct: 55 VAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEA 114 Query: 1535 XXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSL 1356 + + +A+ S + F K + AGI L Sbjct: 115 VALARAAVKVAKDATLFKNSNNTNLLTSSTADKRSKWDQFTEK--------ERAGILGHL 166 Query: 1355 E-SETSPLAGFSTCYETNEHD--DLEPTVXXXXXXXXXXXXXI-AVRSTRQVXXXXXXXX 1188 S+ ++ T +N+ DLE AVRSTRQ Sbjct: 167 AVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAK 226 Query: 1187 XXXXXAISIP-VKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQ 1014 A IP VKT S+ +KKR QEV ++DPLRYLR +TS S+LLT EE ELS G+Q Sbjct: 227 GLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQ 286 Query: 1013 DLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVIS 834 DLLKLERL L ER +PTFAQWA+AA +DQK LRQR+++G CKDKMIKSNIRLVIS Sbjct: 287 DLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVIS 346 Query: 833 IAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRT 654 IAK YQG+GM+LQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWIKQAVRKSL++QSR Sbjct: 347 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRM 406 Query: 653 IRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQ 474 IRLPFHMVEA+YRV+EARKQLYSE G+HP NEE+AEA GLSMKRL VLL+PK PRSLDQ Sbjct: 407 IRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQ 466 Query: 473 KFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGR 294 K G+N++LKPSEVIADP+A T+ED+LIK+FM+ D++KVLD+L REKQV++WRFGM+DGR Sbjct: 467 KIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGR 526 Query: 293 TKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168 KTLQEIGE+MGVSRER+RQIESSAFRKL NKKR HLQQYL Sbjct: 527 MKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568 >dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana] Length = 572 Score = 543 bits (1398), Expect = e-151 Identities = 317/582 (54%), Positives = 387/582 (66%), Gaps = 15/582 (2%) Frame = -2 Query: 1868 SCLVPQFKCQPDTFSIYSKIRPPNSAICFKY--KSSVCIRVQCIVSTAPSISNAETAVLD 1695 SCL+PQFKC PD+FSI+ + ++ C K SV + QC VST+P++ T++LD Sbjct: 3 SCLLPQFKCPPDSFSIHFR-----TSFCAPKHNKGSVFFQPQCAVSTSPALL---TSMLD 54 Query: 1694 RMKLQIPSLDGGSNVLAAEGPLTYLRMSNEAT-------IATETLINCKEXXXXXXXXXX 1536 KL++PS D S+ L ++ TY R +T +A+ETL+ E Sbjct: 55 VAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEA 114 Query: 1535 XXXXXXXXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIGKNSQLLESGQAAGITDSL 1356 + + +A+ S + F K + AGI L Sbjct: 115 VALARAAVKVAKDATLFKNSNYTNLLTSSTADKRSKWDQFTEK--------ERAGILGHL 166 Query: 1355 E-SETSPLAGFSTCYETNEHD--DLEPTVXXXXXXXXXXXXXI-AVRSTRQVXXXXXXXX 1188 S+ ++ T +N+ DLE AVRSTRQ Sbjct: 167 AVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVGLAVRSTRQTERKARRAK 226 Query: 1187 XXXXXAISIP-VKTIST-RKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQ 1014 A IP VKT S+ +KKR QEV ++DPLRYLR +TS S+LLT EE ELS G+Q Sbjct: 227 GLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQ 286 Query: 1013 DLLKLERLYKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVIS 834 DLLKLERL L ER +PTFAQWA+AA +DQK LRQR+++G CKDKMIKSNIRLVIS Sbjct: 287 DLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVIS 346 Query: 833 IAKKYQGSGMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRT 654 IAK YQG+GM+LQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWIKQAVRKSL++QSR Sbjct: 347 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRM 406 Query: 653 IRLPFHMVEASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQ 474 IRLPFHMVEA+YRV+EARKQLYSE G+HP NEE+AEA GLSMKRL VLL+PK PRSLDQ Sbjct: 407 IRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQ 466 Query: 473 KFGINESLKPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGR 294 K G+N++LKPSEVIADP+A T ED+LIK+FM+ D++KVLD+L REKQV++WRFGM+DGR Sbjct: 467 KIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGR 526 Query: 293 TKTLQEIGELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168 KTLQEIGE+MGVSRER+RQIESSAFRKL NKKR HLQQYL Sbjct: 527 MKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568 >ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max] Length = 564 Score = 541 bits (1394), Expect = e-151 Identities = 309/574 (53%), Positives = 386/574 (67%), Gaps = 6/574 (1%) Frame = -2 Query: 1871 MSCLVPQFKCQPDTFSIYSKIRPPNSAICFKYKSSVCIRVQCIVS-TAPSISNAETAVLD 1695 MSCL+P F C DTF + P + + K + ++C + QC++S T+PS ++ Sbjct: 1 MSCLLPHFNCHLDTFRTHPYALPTHLS---KTRPNLCFQPQCVLSATSPSTL---LSLEK 54 Query: 1694 RMKLQIPSLDGGS-NVLAAEGPLTYLRMSNEATIATETLINCKEXXXXXXXXXXXXXXXX 1518 ++ L PS S +AA P L+ + ++T++ E+L+ +E Sbjct: 55 KLALDAPSDPNTSWPYIAAVSPP--LQANFKSTLSAESLLTNEEAVIVAAASEALALAKA 112 Query: 1517 XXXXXXXXXXXAHVEQDEKSEAKSANACSGGEIFIG--KNSQLLESGQAAGITDSLESET 1344 + ++E KS + ++ + K + +E G A +S+ + Sbjct: 113 AAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDGVAE---ESMGAGA 169 Query: 1343 SPLAGFSTCYETNEHDDLEPTVXXXXXXXXXXXXXIAVRSTRQVXXXXXXXXXXXXXAIS 1164 + G + E DLEP+ IAVRS RQ + Sbjct: 170 EIMEGVDVS-PSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKATTN 228 Query: 1163 IPV--KTISTRKKRPSLQEVKYSDPLRYLRGSTSGSRLLTASEEQELSVGVQDLLKLERL 990 S+R+KR S+QEV YSDPLRYLR +TS SRLLT +EE +LS G+QDLLKLE++ Sbjct: 229 FTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKI 288 Query: 989 YKALKERGHGEPTFAQWATAARLDQKILRQRLNYGIQCKDKMIKSNIRLVISIAKKYQGS 810 + L ER +PTFAQWA A +DQK LR+RLNYGI CKDKMIKSNIRLVISIAK YQGS Sbjct: 289 QEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGS 348 Query: 809 GMSLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLTEQSRTIRLPFHMV 630 GM+LQDLVQEGCRGLV+G EKFD +KGFKFSTYAHWWIKQAVRKSL++QSRTIRLPFHMV Sbjct: 349 GMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 408 Query: 629 EASYRVREARKQLYSENGRHPDNEEVAEAAGLSMKRLNDVLLTPKAPRSLDQKFGINESL 450 EA+YRV+EARKQLYSENGR PD+EEVAEA GLSMKRLN VL+TPKAPRSL+QK GIN++L Sbjct: 409 EATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNL 468 Query: 449 KPSEVIADPDAETTEDLLIKQFMKLDIEKVLDTLTQREKQVVKWRFGMDDGRTKTLQEIG 270 KPSEVI+DPDAET E+ L+KQFMK D+E+ LD+L RE+QVV+WRFGMDDGRTKTLQEIG Sbjct: 469 KPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIG 528 Query: 269 ELMGVSRERIRQIESSAFRKLTNKKRTKHLQQYL 168 E++GVSRERIRQIESSAF+KL NKKRT HLQQYL Sbjct: 529 EMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYL 562