BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00007544
         (1739 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   644   0.0  
gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus pe...   634   e-179
gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]     617   e-174
gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao] gi|508...   616   e-173
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   612   e-172
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   611   e-172
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   603   e-170
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   600   e-169
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   593   e-167
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,...   592   e-166
ref|XP_002333134.1| predicted protein [Populus trichocarpa]           590   e-166
ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glyci...   590   e-166
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...   584   e-164
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   584   e-164
ref|XP_002331841.1| predicted protein [Populus trichocarpa]           584   e-164
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...   581   e-163
ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,...   578   e-162
ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,...   577   e-162
ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplas...   575   e-161
gb|ESW33340.1| hypothetical protein PHAVU_001G061400g [Phaseolus...   574   e-161

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  644 bits (1662), Expect = 0.0
 Identities = 342/519 (65%), Positives = 404/519 (77%), Gaps = 4/519 (0%)
 Frame = -2

Query: 1735 MGVVTASSSAS--RTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIE 1562
            MGVVT SSSAS  RTP GL+ +FS+HQ+  + P +LAFK +K +  A  +P +P+PL IE
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 1561 TTGEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXX 1382
            T+ ++HKKRL   ++PSK ++AVS    SP + ELD NEAAAKLE+IY L  A       
Sbjct: 61   TS-KDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAE 119

Query: 1381 XXXXXXXXXXXXXRNN--ADDDELEKVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKKTP 1208
                         +    ADD   ++VS  VVR   KK KRLSL+KRI L +  +EK   
Sbjct: 120  DLERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVA 179

Query: 1207 LSKKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSL 1028
              +K R  K+EDE +  L REYS STDLVSLDWKKMKIPPVL  SEHAWLFKLMQPMK L
Sbjct: 180  SIQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGL 239

Query: 1027 VQLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKY 848
            +++K+NLQ++LGREPTDGEL EA++M+  QV RHMEVGQAARNKLIKHNLRLVLF +NKY
Sbjct: 240  LEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKY 299

Query: 847  FQEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRV 668
            FQEFA+ P FQDLCQAGV GLITAIDRFEPKR  RLSTY LFWIRHAI+RSMTLSSFTRV
Sbjct: 300  FQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRV 359

Query: 667  SFGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHA 488
            SFGLESVRVEIQ+ KL L+F+L+R+PTEEEII++VG+SP+RY EVMRASKSV+SL++RHA
Sbjct: 360  SFGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHA 419

Query: 487  TTQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 308
            TTQEE             D+ +Q ALLRLA+DDVLDSLKPKESLV+RQRYGLDGKGDRTL
Sbjct: 420  TTQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTL 479

Query: 307  GEIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYIY 191
            GEIAGNL+ISREMVRKHE+KALMKLKHP R+DY+RQYI+
Sbjct: 480  GEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYIF 518


>gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  634 bits (1635), Expect = e-179
 Identities = 333/520 (64%), Positives = 406/520 (78%), Gaps = 6/520 (1%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT SSSASRTPLGL  + +  +S  + P I+AFKT++  K+A  +P + +PL IET 
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLK-----SAXXXX 1391
             ++H+KRL    + +K +++ +  VASP T E+D NEAAAKLE++Y        ++    
Sbjct: 61   -KKHQKRLGKARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVED 119

Query: 1390 XXXXXXXXXXXXXXXXRNNADDDELEKVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKK- 1214
                             ++AD DE  + S  VVR++ KKAKRLSL+KR+ LK + +EK  
Sbjct: 120  VDGLMRRGRKRRKKTSESDADKDE-NRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVI 178

Query: 1213 TPLSKKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMK 1034
            + + +K ++ K+E+EK+ +L REYS STDLVSLDWKKMKIPPVL+SSEHAWLFKLMQPMK
Sbjct: 179  SSIVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMK 238

Query: 1033 SLVQLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMN 854
             L+++KENLQ++LGREPT+GEL EA NM+V QV +H+EVG+AAR+KLIKHNLRLVLF MN
Sbjct: 239  GLLEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMN 298

Query: 853  KYFQEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFT 674
            KYFQ+FA+ P FQDLCQAGV GLITAIDRFEPKR  RLSTY LFWIRHAIIRSMTLSSFT
Sbjct: 299  KYFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFT 358

Query: 673  RVSFGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSR 494
            RVSFGLESVR EIQK KL ++F LKRMPTE+EII++VG+SP+RY EVMRASK V SL+SR
Sbjct: 359  RVSFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSR 418

Query: 493  HATTQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDR 314
            H TTQEE             D R++PALLRLA+DDVLDSLKPKESLVIRQRYGLDGKGDR
Sbjct: 419  HTTTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDR 478

Query: 313  TLGEIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            TLGEIAGNLNISREMVRKHE+KALMKLKHP R+DY+R+Y+
Sbjct: 479  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 518


>gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 517

 Score =  617 bits (1590), Expect = e-174
 Identities = 334/517 (64%), Positives = 389/517 (75%), Gaps = 3/517 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQS-VSKSPFILAFKTNKPRKSASGSPCKPVPLRIET 1559
            MGVVT SSSASRTPLGL  +FSS++S V K P I+AFK +K  K+   +P   + L +ET
Sbjct: 1    MGVVTVSSSASRTPLGLSLKFSSNRSSVLKKPLIVAFKGDKSNKTVLVAPQDQIILPVET 60

Query: 1558 TGEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXX 1379
              +E K R+    + S  ++AV+   AS  T E+D NEAAAKLE+I+ L SA        
Sbjct: 61   R-KEVKSRVGKAKKSSNRVKAVATDEASTSTMEVDYNEAAAKLENIFKLSSADVEDAVGL 119

Query: 1378 XXXXXXXXXXXXRNNADD-DELEKVSGEVVRSKIKKAKRLSLDKRIELKRHSEEK-KTPL 1205
                          + +   +    S  VVR++ KKAKRLSL KR+ELKR  EE     L
Sbjct: 120  TSRGRRRRSKVIGESDERAGKKSTTSDTVVRNRKKKAKRLSLHKRVELKRDKEENVAVVL 179

Query: 1204 SKKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLV 1025
             +K R   +E+EK+ KL REYS STDLVSLDWKKMKIPPVL SSEH WLFKLMQP+K L 
Sbjct: 180  VRKRRESLNEEEKIEKLVREYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPLKQLF 239

Query: 1024 QLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYF 845
            Q+ E+LQ+ LGREPT+ EL EA N++V QV RH+E G+AARNKLIKHNLRLVLF MNKYF
Sbjct: 240  QVGEDLQKTLGREPTENELAEATNISVVQVKRHLEAGRAARNKLIKHNLRLVLFVMNKYF 299

Query: 844  QEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVS 665
            Q+F + P FQDLCQAGV GLITAIDRFEPKR+ RLSTY LFWIRHAIIRSMT+SSFTRVS
Sbjct: 300  QDFTNGPKFQDLCQAGVRGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVS 359

Query: 664  FGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHAT 485
            FGLESVR EIQK K+ L FELKR+PTEEEII++VG+SP+RY EVMRASK VISLNSRH T
Sbjct: 360  FGLESVRAEIQKAKIELTFELKRLPTEEEIIEKVGISPERYHEVMRASKPVISLNSRHVT 419

Query: 484  TQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 305
            TQEE             D R++PALLRLA+DDVLDSLKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  TQEEFINAITDVDGVDGDDRRKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 479

Query: 304  EIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            EIAGNLNISREMVRKHE+KALMKLKHP R+DY+R+Y+
Sbjct: 480  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYM 516


>gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  616 bits (1588), Expect = e-173
 Identities = 325/516 (62%), Positives = 391/516 (75%), Gaps = 2/516 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVV+ SSSA+RTPLGL  +FS+ +  S+ P  +AFK +K   +A  +P + + L IET 
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
             +EH KR     +  K +  V     SP T E+D NEAAAKLE+IY L  A         
Sbjct: 61   -KEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEV 119

Query: 1375 XXXXXXXXXXXRNNADDDELEKVSGE--VVRSKIKKAKRLSLDKRIELKRHSEEKKTPLS 1202
                       + + + DE    S +  VVR++  + KRLSLD RI LK++ EEK     
Sbjct: 120  EGKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSV 179

Query: 1201 KKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLVQ 1022
            ++ ++ ++E EK+ +L R+YS STDLVSLDW+KMKIPPVL S EH WLFKLMQPMK+L+Q
Sbjct: 180  RRKKSSENESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQ 239

Query: 1021 LKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYFQ 842
             KENLQ++LGR+PT+ EL EA NM+ AQV +H+EVGQAARNKLIKHNLRLVLFS+NKYFQ
Sbjct: 240  AKENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQ 299

Query: 841  EFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVSF 662
            +FA+ P FQDLCQAGV GLITAIDRFEP+R+ RLSTYSLFWIRHAIIRSMTLSSFTRVSF
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSF 359

Query: 661  GLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHATT 482
            GLESVRVEIQ+ KL L+FEL R PTEEEII++VG+SP+RY+EVMRASK V SL+SRH+ T
Sbjct: 360  GLESVRVEIQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVT 419

Query: 481  QEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 302
            QEE             D R+QPALLRLA+DDVLDSLKPKESLVIRQRYGLDGKGDRTLGE
Sbjct: 420  QEEFINGITDIDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 479

Query: 301  IAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            IAGNLNISREMVRKHE+KALMKLKHP R+DY+R+Y+
Sbjct: 480  IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYV 515


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 520

 Score =  612 bits (1577), Expect = e-172
 Identities = 333/520 (64%), Positives = 389/520 (74%), Gaps = 6/520 (1%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRF-SSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIET 1559
            MGVVT SSS SRTPLGL     SS +S  + P I+AF+T+K  K A  +P + VPL IET
Sbjct: 1    MGVVTVSSSVSRTPLGLSTNLVSSQRSTLRKPLIVAFRTDKSDKKALVAPQEKVPLPIET 60

Query: 1558 TGEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXX 1379
             G++ +KRL    +  K ++A     A     ELD NEAAAKLE++Y             
Sbjct: 61   -GKKVQKRLGKARKLPKSVKAALIEEAPTCDLELDYNEAAAKLENLYKRSPETEASDVEN 119

Query: 1378 XXXXXXXXXXXXRNNAD--DDELEKVSGE--VVRSKIKKAKRLSLDKRIELKRHSEEK-K 1214
                        R      DD++EK + +  VVRS  KKAKRLSLDKR+ LK + +EK  
Sbjct: 120  VDGLMIKRGRKRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVA 179

Query: 1213 TPLSKKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMK 1034
              + +K +  + E+E M +L REYS STDLVSLDWKKM+IPPVLSSSEH WLFKLMQPMK
Sbjct: 180  ASVVRKRKDKRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMK 239

Query: 1033 SLVQLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMN 854
             L+++KE LQ++LGREP  GEL EA NMTV QV RH+EVG+AARNKLIKHNLRLVLF +N
Sbjct: 240  GLLEVKEILQKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVIN 299

Query: 853  KYFQEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFT 674
            KYFQ+FA+ P FQDLCQAGV GLITAIDRFEP+R+ RLSTY LFWIRHAIIRSMTLSSFT
Sbjct: 300  KYFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFT 359

Query: 673  RVSFGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSR 494
            RVSFGLESVR EIQK KL ++ +LKRMPTE+EII++VG+SP+RY EVMRASK V SLNSR
Sbjct: 360  RVSFGLESVRAEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSR 419

Query: 493  HATTQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDR 314
            H+ TQEE             D R++PALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDR
Sbjct: 420  HSVTQEEFINGITDVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDR 479

Query: 313  TLGEIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            TLGEIAGNLNISREMVRKHE+KALMKLKHP R+DY+R+YI
Sbjct: 480  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYI 519


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  611 bits (1576), Expect = e-172
 Identities = 326/518 (62%), Positives = 400/518 (77%), Gaps = 3/518 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT SSSASR+PLGL  RFS+     K P I++FK +K + +   +P + + L IET+
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSTRLCPLKRPVIVSFKKDKTKNTTLIAPKESISLSIETS 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIY--NLKSAXXXXXXX 1382
             +E++KR   V++ S+ + AV+   ASP T ELD +EAAAKLESIY  +L++A       
Sbjct: 61   -KENEKRSRRVSKRSERVHAVAIE-ASPSTLELDYSEAAAKLESIYKRSLETASSNTEVQ 118

Query: 1381 XXXXXXXXXXXXXRNNADDDELEKVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKKTPLS 1202
                             D++  ++V+  VV+++ K +KRL+LD+RI L ++ E +    S
Sbjct: 119  DHLVKRRPRTRKRIVEGDEEAKKEVADNVVKNRRKTSKRLNLDQRIALLKNKEGEMVASS 178

Query: 1201 KKNRAVKD-EDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLV 1025
            ++ +  +D EDEK+ KL REYSG+TDL SLDWKKMKIPPVL SSEH WLFKLMQPMK+++
Sbjct: 179  ERRKLKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAIL 238

Query: 1024 QLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYF 845
            Q+KENLQ +LGREPTDGE+ EA NM  +++ + +EVG+AARNKLIKHNLRLVLF MNKYF
Sbjct: 239  QVKENLQNDLGREPTDGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYF 298

Query: 844  QEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVS 665
            Q+FA+   FQDLCQAGV GLITAIDRFEP RK RLSTY LFWIRHAIIRSMT SSFT+V 
Sbjct: 299  QDFANGSRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVP 358

Query: 664  FGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHAT 485
            FGLES+RVEIQK KL L+FEL+R+PT+EEII+RVGLSP+RY EVM+ SK V SL++R+ T
Sbjct: 359  FGLESIRVEIQKAKLELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKT 418

Query: 484  TQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 305
            TQEEL            DKRKQPALLRLA+DDVLDSLKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 419  TQEELINGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 304  EIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYIY 191
            EIAGNLNISREMVRKHE+KALMKLKHPTR+DYVR+YI+
Sbjct: 479  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
            gi|567858878|ref|XP_006422122.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Citrus
            sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Citrus
            sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Citrus
            sinensis] gi|557523994|gb|ESR35361.1| hypothetical
            protein CICLE_v10004760mg [Citrus clementina]
            gi|557523995|gb|ESR35362.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
          Length = 513

 Score =  603 bits (1556), Expect = e-170
 Identities = 324/516 (62%), Positives = 393/516 (76%), Gaps = 2/516 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT SSS +R+P+GL     SH+S SK P I+AFK +K    A  SP + +PL IET 
Sbjct: 1    MGVVTISSSPARSPIGLST--ISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETP 58

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
             + H+KR     +  + ++ V +  ASP T ++D NEAAAKLE+IY L  A         
Sbjct: 59   -KRHQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYA 117

Query: 1375 XXXXXXXXXXXRNNAD-DDELEKVSGE-VVRSKIKKAKRLSLDKRIELKRHSEEKKTPLS 1202
                       +   + + + + VSG+ VVR+++K+ KRLSLDKRIEL+++ +EK    +
Sbjct: 118  DGVVKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKT 177

Query: 1201 KKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLVQ 1022
            +K  + KDE EK+ KL REYS STDLVSLDWKKMKIPPVLSS+EH WLFKLMQPMK  VQ
Sbjct: 178  RKTDS-KDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQ 236

Query: 1021 LKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYFQ 842
            +KE LQ++LGREPTD EL EA NM+ AQV + +EVG+AARNKLIKHNLRLVLF + KYFQ
Sbjct: 237  VKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQ 296

Query: 841  EFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVSF 662
            +FA+ P FQDLCQAGV GLITAIDRFEPKR+ RLSTY LFWIRHAIIRSMT+SSFTRV F
Sbjct: 297  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPF 356

Query: 661  GLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHATT 482
            GLESVR EIQ+ KL L+FELKR+PT+EEIIQ V +SP+RYREVM+ASK ++SL+SRH  T
Sbjct: 357  GLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVT 416

Query: 481  QEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 302
            QEE             + ++QPALLRLA+DDVLDSLKPKESLVIRQR+GLDGKGDRTLGE
Sbjct: 417  QEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGE 476

Query: 301  IAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            IAGNLNISREMVRKHE+K LMKLKHPTR+DY+RQ++
Sbjct: 477  IAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHM 512


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 1 [Solanum
            lycopersicum]
          Length = 516

 Score =  600 bits (1548), Expect = e-169
 Identities = 320/518 (61%), Positives = 396/518 (76%), Gaps = 3/518 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT SSSASR+PLGL  RFS+     K P I++FK +  + +   SP + +   IET+
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDITKNTTLVSPKESISSPIETS 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIY--NLKSAXXXXXXX 1382
             +E++KR   V++ ++ + AV+   A P T ELD +EAAAKLESIY  +L++A       
Sbjct: 61   -KENEKRSRRVSKRTERVHAVTIE-APPSTLELDYSEAAAKLESIYKRSLETASPNTEVK 118

Query: 1381 XXXXXXXXXXXXXRNNADDDELEKVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKKTPLS 1202
                            +D++  ++V   VV+++ KK+KRL+LD+RI L ++ E K    S
Sbjct: 119  DHLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASS 178

Query: 1201 KKNRAVKD-EDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLV 1025
            ++ +  +D EDEK+ KL REYSG+TDL SLDWKKMKIPPVL SSEH WLFKLMQPMK+++
Sbjct: 179  ERRKLNEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAIL 238

Query: 1024 QLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYF 845
            Q+KENLQ +LGREPTDGE+ EA NM  +++ + +E G+AARNKLIKHNLRLVLF MNKYF
Sbjct: 239  QVKENLQNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYF 298

Query: 844  QEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVS 665
            Q+FA++  FQDLCQAGV GLITAIDRFEP RK RLSTY LFWIRHAIIR MT SSFT+V 
Sbjct: 299  QDFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVP 358

Query: 664  FGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHAT 485
            FGLES+RVEIQK KL L+FEL+R+PT++EII+RVG SP+RY EVM+ SK + SL++R+ T
Sbjct: 359  FGLESIRVEIQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKT 418

Query: 484  TQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 305
            TQEEL            DKRKQPALLRLA+DDVLDSLKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 419  TQEELINGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 478

Query: 304  EIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYIY 191
            EIAGNLNISREMVRKHE+KALMKLKHPTR+DYVR+YI+
Sbjct: 479  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
            sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  593 bits (1530), Expect = e-167
 Identities = 324/516 (62%), Positives = 387/516 (75%), Gaps = 2/516 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVV+ SSSASRTPLGL  +FS++ S +K P I+AFK NK   ++  +P + +PL +ETT
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKANKSNNTSLVAPHEQIPLPVETT 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
              + KKRL    + S  ++AV   V SP T  +D NEAAAKLE+IY L            
Sbjct: 61   --KGKKRLGKSKKSSNRLKAVRTEV-SPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDA 117

Query: 1375 XXXXXXXXXXXRNNADDD-ELEKVSGEV-VRSKIKKAKRLSLDKRIELKRHSEEKKTPLS 1202
                       R  ++ D E E  +G++ VR++ KKAKRLSL+KRI L+  +EEK    +
Sbjct: 118  SGVIRRGRQRKRKISEGDKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSA 177

Query: 1201 KKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLVQ 1022
             K +  K+E+EK+  L REYS STDLVSLDWKKMKIPPVL+SSEH WLFKLMQPMK+L+Q
Sbjct: 178  GKRKDRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQ 237

Query: 1021 LKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYFQ 842
            +KE+LQ  LG EPTD EL +A NM V QV + + VG+AARNKLIKHNLRLVLF + KYFQ
Sbjct: 238  VKEHLQENLGGEPTDVELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQ 297

Query: 841  EFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVSF 662
            +FA+   FQD CQAGV GLITAIDRFEPKR+ RLSTY LFWIRHAIIRSMTLSSFTRVSF
Sbjct: 298  DFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 357

Query: 661  GLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHATT 482
            GLES+R EIQK KL L F+LKR P E+EII++V +SP+RY EV RASK V+SL+SRH TT
Sbjct: 358  GLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTT 417

Query: 481  QEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 302
            QEE             D R+Q ALLRLA+DDVLDSLKPKESLV+RQRYGLDGKGDRTLGE
Sbjct: 418  QEEF--IGGIADVDGGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGE 475

Query: 301  IAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            IAGNLNISREMVRKHE+KALMKLKHPTR+DY+R+Y+
Sbjct: 476  IAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYV 511


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Glycine max]
            gi|571496981|ref|XP_006593757.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
          Length = 512

 Score =  592 bits (1526), Expect = e-166
 Identities = 314/514 (61%), Positives = 390/514 (75%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGV+T S+SA+RTPL L+ R  SHQ V K P ILAFK NK  K+   SP + +PL +ET 
Sbjct: 1    MGVITVSTSAARTPLRLNTRLISHQQVHKRPIILAFKGNKSNKTTLVSPQEKIPLPLETA 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
             ++H+KR+   ++  K ++AVS    SP T ++D NEAAAKLE+IY L S          
Sbjct: 61   -KKHQKRVGKTSESLKRVRAVSTVETSPCTLDVDYNEAAAKLENIYKL-SPVSDTCNVED 118

Query: 1375 XXXXXXXXXXXRNNADDDELEKVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKKTPLSKK 1196
                       R    ++  +     VVR++ KKAKRLSLDKRI LK +++E+    ++K
Sbjct: 119  IDSKIERVLRRRKKVSEERDDGNCDNVVRNQNKKAKRLSLDKRIALKNNAKEEVIDQTQK 178

Query: 1195 NRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLVQLK 1016
             R VK+  + +  L R+YS STDLVS+DWKKMKIPPVL SSEHAWLFKLMQPMK+L+Q K
Sbjct: 179  KRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQAK 238

Query: 1015 ENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYFQEF 836
            E+L +E+ +E T GEL +A NM++ QV + +EVG+AARNKLIKHNLRLVLF +NKYFQ+F
Sbjct: 239  EDL-KEVDKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQDF 297

Query: 835  ASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVSFGL 656
            AS P FQDLCQAGV GLITAIDRFEPKR+L+LSTYSLFWIRH+I+RS+TLSSFTRV FGL
Sbjct: 298  ASGPRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGL 357

Query: 655  ESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHATTQE 476
            E VRV+IQ+ KL L FEL+R PTEEE+++R+G+S +RY EVM+ASK ++SL+SRH TTQE
Sbjct: 358  ERVRVDIQRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILSLHSRHITTQE 417

Query: 475  ELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 296
            E             D R+Q A+LRLA+DDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA
Sbjct: 418  EYINGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 477

Query: 295  GNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            GNLNISRE+VRKHE+KALMKLKHP R+DY+R+Y+
Sbjct: 478  GNLNISREIVRKHEVKALMKLKHPARLDYLRRYV 511


>ref|XP_002333134.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  590 bits (1521), Expect = e-166
 Identities = 322/516 (62%), Positives = 387/516 (75%), Gaps = 2/516 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVV+ SSSASRTPLGL  +FS++ S +K P I+AFK +K   ++  +P + +PL +ETT
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSNNTSLVAPHEQIPLPVETT 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
              + KKRL    + S  ++AV   V SP T  +D NEAAAKLE+IY L            
Sbjct: 61   --KGKKRLGKSKKSSNRLKAVRTEV-SPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDA 117

Query: 1375 XXXXXXXXXXXRNNADDD-ELEKVSGEV-VRSKIKKAKRLSLDKRIELKRHSEEKKTPLS 1202
                       R  ++   E E  +G++ VR++ KKAKRLSL+KRI L+  +EEK    +
Sbjct: 118  SGVIRRGRQRKRKISEGGKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSA 177

Query: 1201 KKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLVQ 1022
             K +  K+E+EK+  L REYS STDLVSLDWKKMKIPPVL+SSEH WLFKLMQPMK+L+Q
Sbjct: 178  GKRKDRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQ 237

Query: 1021 LKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYFQ 842
            +KE+LQ  LG EPTD EL +A+NM V QV + + VG+AARNKLIKHNLRLVLF + KYFQ
Sbjct: 238  VKEHLQENLGGEPTDVELAKAINMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQ 297

Query: 841  EFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVSF 662
            +FA+   FQD CQAGV GLITAIDRFEPKR+ RLSTY LFWIRHAIIRSMTLSSFTRVSF
Sbjct: 298  DFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 357

Query: 661  GLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHATT 482
            GLES+R EIQK KL L F+LKR P E+EII++V +SP+RY EV RASK V+SL+SRH TT
Sbjct: 358  GLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTT 417

Query: 481  QEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 302
            QEE             D R+Q ALLRLA+DDVLDSLKPKESLV+RQRYGLDGKGDRTLGE
Sbjct: 418  QEEF--IGGIADVDGGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGE 475

Query: 301  IAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            IAGNLNISREMVRKHE+KALMKLKHPTR+DY+R+Y+
Sbjct: 476  IAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYV 511


>ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glycine max]
            gi|382365028|dbj|BAM05477.1| sigma-like factor 5A
            [Glycine max]
          Length = 512

 Score =  590 bits (1520), Expect = e-166
 Identities = 318/516 (61%), Positives = 391/516 (75%), Gaps = 2/516 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT S+ A+RTPL L+ R +SHQ V K P I+AFK NK  K+A  SP + +PL IET 
Sbjct: 1    MGVVTVSTLAARTPLRLNTRLTSHQQVHKRPLIVAFKGNKLNKAALVSPQEQIPLPIETA 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLK--SAXXXXXXX 1382
             ++ +KR+   ++  K ++AVS    SP T ++D NEAAAKLE+IY L   S        
Sbjct: 61   KKD-QKRVGKTSESLKRVRAVSIVETSPCTLDMDYNEAAAKLENIYKLSPVSDTCNMEDI 119

Query: 1381 XXXXXXXXXXXXXRNNADDDELEKVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKKTPLS 1202
                           N  DDE   +   VVR++ KKAKRLSLDKRI LK +++E+    +
Sbjct: 120  DSKVERVLWRRRKVGNEHDDENCDI---VVRNQNKKAKRLSLDKRITLKNNAKEEVIDQT 176

Query: 1201 KKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLVQ 1022
            +K R VK+  + +  L R+YS STDLVS+DWKKMKIP VL SSEHAWLFKLMQPMK+L+Q
Sbjct: 177  QKIRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPAVLPSSEHAWLFKLMQPMKALLQ 236

Query: 1021 LKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYFQ 842
             KE+LQ  +G+E TDGEL +A NM++ QV + +EVG+AARNKLIKHNLRLVLF ++KYFQ
Sbjct: 237  AKEDLQ-SVGKEITDGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVISKYFQ 295

Query: 841  EFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVSF 662
            +FAS   FQDLCQAGV GLITAIDRFEPKR+L+LSTYSLFWIRH+I+RS+TLSSFTRV F
Sbjct: 296  DFASGRRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPF 355

Query: 661  GLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHATT 482
            GLE VRV+IQ+ KL L FEL+R PTEEE+++R+G+SP+RY EVM+ASK ++SL+SRH TT
Sbjct: 356  GLERVRVDIQRTKLKLTFELQRSPTEEELVERIGISPERYYEVMKASKPILSLHSRHITT 415

Query: 481  QEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 302
            QEE             D R+Q A+LRLA+DDVLDSLKPKESLVIRQRYGLDGKGDRTLGE
Sbjct: 416  QEEYINGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 475

Query: 301  IAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            IAGNLNISREMVRKHE+KALMKLKHP R+DY+R+Y+
Sbjct: 476  IAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYV 511


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score =  584 bits (1506), Expect = e-164
 Identities = 315/520 (60%), Positives = 382/520 (73%), Gaps = 6/520 (1%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT SS+A+RTP  L  +FS+H S  K P I+AFK +K   +   SP + V L +E+ 
Sbjct: 1    MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
                KKR    ++P K ++AV    A+P + +LD NEAAAKLE+I+ L            
Sbjct: 61   NRR-KKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECK 119

Query: 1375 XXXXXXXXXXXRNNADDDELEKVSGEVVRSKIKKAKRLSLDKRIELK------RHSEEKK 1214
                       + +A+     +    +VR++ K+ KRL LDKRI LK      R+ E K 
Sbjct: 120  DGRSKRGQKRSKKSAN-----RPGDGIVRNQTKRIKRLDLDKRIALKNKRKAKRNKEGKA 174

Query: 1213 TPLSKKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMK 1034
             P  +K +  K+ED+++ +L R+YS STDLVSLDWKKMKIPPVL SSEH  LFKL+QPMK
Sbjct: 175  VPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMK 234

Query: 1033 SLVQLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMN 854
            +LV+++E LQ+ LGREPT+GEL  A NM V QV R +EVG+AARNKLIKHNLRLVLF +N
Sbjct: 235  ALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVIN 294

Query: 853  KYFQEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFT 674
            KYF++FAS P FQDLCQAGV GLITAIDRFEPKRK RLSTY+LFWIRHAIIRSMTLSSFT
Sbjct: 295  KYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFT 354

Query: 673  RVSFGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSR 494
            RVSFGL+SVRVEIQ+ KL L+ EL R+PTE EI  +VG+S +RY EVMRA+K V SL+SR
Sbjct: 355  RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSR 414

Query: 493  HATTQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDR 314
            H+TT EEL            D R+QPALLRLA+DDVLDSLKPKESLVIRQRYGLDGKG+R
Sbjct: 415  HSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNR 474

Query: 313  TLGEIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            TLGEIAGNLNISREMVRKHE+KALMKLKHP R+DY+R+Y+
Sbjct: 475  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 514


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  584 bits (1505), Expect = e-164
 Identities = 314/515 (60%), Positives = 383/515 (74%), Gaps = 1/515 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVTASSSA+RTPLGL  +FS+++S  K   ++AFK +K        P +  PL IET+
Sbjct: 1    MGVVTASSSAARTPLGLSLKFSTYRSTVKRSLVVAFKEDKANDIILVPPRERTPLPIETS 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
             +  K+R     + S G            T E+D NEAAAKLE+IY L  A         
Sbjct: 61   -KGKKRRGKTNREVSSG------------TLEVDYNEAAAKLENIYKLSPATDTSDVDIN 107

Query: 1375 XXXXXXXXXXXRNNADDDELE-KVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKKTPLSK 1199
                       +    D++ E + S  +VR++ KK KRLSLDKRI LK++ EE+     +
Sbjct: 108  GLIRKGRQRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIR 167

Query: 1198 KNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLVQL 1019
            K +  KD++EK+ +L R YS ST+LVSLDW+KMKIPPVL S+EHAWLFKLMQPMK+L+ +
Sbjct: 168  KKKDSKDDNEKIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPV 227

Query: 1018 KENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYFQE 839
            K +LQ+ LGR+PTDGEL EA NM V +V + +EVG+AARNKLIKHNLRLV+F MNKYFQ+
Sbjct: 228  KADLQKNLGRDPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQD 287

Query: 838  FASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVSFG 659
            FA+ P FQDLCQAGV GLITAIDRFEP+R+ +LSTYSLFWIRHAIIRSMTLSSFT+VSFG
Sbjct: 288  FANGPRFQDLCQAGVKGLITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTKVSFG 347

Query: 658  LESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHATTQ 479
            LESVR EIQK KL L+ EL+R PTEEEII+RVG+S +RY EV+RA+K  +SL++RHA TQ
Sbjct: 348  LESVRTEIQKAKLELLIELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQ 407

Query: 478  EELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 299
            EE             D R+QPALLRLA+DDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI
Sbjct: 408  EEF--INGITDIDGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 465

Query: 298  AGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            AGNLNISREMVRK+E+KALMKLKHP R+DY+R+Y+
Sbjct: 466  AGNLNISREMVRKYEVKALMKLKHPARVDYLRRYV 500


>ref|XP_002331841.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  584 bits (1505), Expect = e-164
 Identities = 318/516 (61%), Positives = 386/516 (74%), Gaps = 2/516 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MG+V+ SSSAS TPLG   +FS+ +S +K P I+AFK +K  ++A  +P + +PL IETT
Sbjct: 1    MGIVSVSSSASWTPLGFSTKFSTCRSTAKRPLIVAFKADKSNETALVAPHEQIPLPIETT 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
             E  KKR     + S  ++AV   V SP T  +D NEAAAKLE+IY L            
Sbjct: 61   KE--KKRRGKSKKSSDRLKAVRTEV-SPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDV 117

Query: 1375 XXXXXXXXXXXRNNADDDELE--KVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKKTPLS 1202
                       R  ++ ++ +  + S  +VR++ KKAKRLSL KRI L+  S+EK     
Sbjct: 118  NGVIRRCRQRKRKTSECEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIKSDEKLVTSV 177

Query: 1201 KKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLVQ 1022
             K +  K+E+EK+ +L REYS STDL SLDWKKMKIPPVL+S+EHAWLFKLMQPMK+ +Q
Sbjct: 178  GKRKGRKNENEKIDELVREYSSSTDLASLDWKKMKIPPVLTSAEHAWLFKLMQPMKASLQ 237

Query: 1021 LKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYFQ 842
            +KE+LQ   GREPT+GEL EA +M V QV + +EVG+AARNKLIKHNLRLVLF +NKYFQ
Sbjct: 238  VKEHLQENSGREPTEGELAEATDMDVLQVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQ 297

Query: 841  EFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVSF 662
            ++A+ P +QDLCQAGV GL+TAIDRFEPKR+ RLSTY LFWIRHAIIRSMTLSSFTRVSF
Sbjct: 298  DYANGPRYQDLCQAGVKGLMTAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 357

Query: 661  GLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHATT 482
            GLES+R EIQK KL L F+L R PT EEII++VG+S +RY EVMRASK V+SL+SRH TT
Sbjct: 358  GLESIRSEIQKAKLELWFQLLRKPTGEEIIEKVGISIERYHEVMRASKPVLSLHSRHKTT 417

Query: 481  QEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 302
            QEEL            D R+Q ALLRLA+DDVLDSLKPKESLV+RQR+GLDGKGDRTLGE
Sbjct: 418  QEEL--ISGVADVNGGDDRRQSALLRLALDDVLDSLKPKESLVVRQRFGLDGKGDRTLGE 475

Query: 301  IAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            IAGNLNISREMVRKHE KALMKLKHPTR+DY+ +Y+
Sbjct: 476  IAGNLNISREMVRKHEAKALMKLKHPTRVDYLCRYV 511


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  581 bits (1497), Expect = e-163
 Identities = 314/519 (60%), Positives = 380/519 (73%), Gaps = 5/519 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT SS+A+RTP  L  +FS+H S  K P I+AFK +K   +   SP + V L +E+ 
Sbjct: 1    MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
                KKR    ++P K ++AV    A+P + +LD NEAAAKLE+I+ L            
Sbjct: 61   NRR-KKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECK 119

Query: 1375 XXXXXXXXXXXRNNADDDELEKVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKKTPLSKK 1196
                       + +A+     +    +VR++ K+ KRL LDKRI LK   E K   L +K
Sbjct: 120  DGRSKRGQKRSKKSAN-----RPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRK 174

Query: 1195 NRAVKDE-----DEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKS 1031
             +  K+E     D+++ +L R+YS STDLVSLDWKKMKIPPVL SSEH  LFKL+QPMK+
Sbjct: 175  QKDTKNEADEIDDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKA 234

Query: 1030 LVQLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNK 851
            LV+++E LQ+ LGREPT+GEL  A NM V QV R +EVG+AARNKLIKHNLRLVLF +NK
Sbjct: 235  LVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINK 294

Query: 850  YFQEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTR 671
            YF++FAS P FQDLCQAGV GLITAIDRFEPKRK RLSTY+LFWIRHAIIRSMTLSSFTR
Sbjct: 295  YFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTR 354

Query: 670  VSFGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRH 491
            VSFGL+SVRVEIQ+ KL L+ EL R+PTE EI  +VG+S +RY EVMRA+K V SL+SRH
Sbjct: 355  VSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRH 414

Query: 490  ATTQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRT 311
            +TT EEL            D R+QPALLRLA+DDVLDSLKPKESLVIRQRYGLDGKG+RT
Sbjct: 415  STTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRT 474

Query: 310  LGEIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            LGEIAGNLNISREMVRKHE+KALMKLKHP R+DY+R+Y+
Sbjct: 475  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYL 513


>ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Glycine max]
          Length = 509

 Score =  578 bits (1491), Expect = e-162
 Identities = 307/517 (59%), Positives = 380/517 (73%), Gaps = 3/517 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT S SASRTPLG + +FS+H+   K P I+AFK +K   SA  +  + +P+ +ET 
Sbjct: 1    MGVVTVSGSASRTPLGFNTKFSTHRL--KRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
             +  KKR+    +  K         +SP + ++D NEAAA LE+IY L  A         
Sbjct: 59   KKTQKKRIGKSNKLPK-------RESSPSSMDVDYNEAAAMLENIYKLSPASHTGNAECI 111

Query: 1375 XXXXXXXXXXXRNNADDDELEKVSGEVV---RSKIKKAKRLSLDKRIELKRHSEEKKTPL 1205
                       +   D+ E +++ G+ V   ++K KKAKRL+LD+RI LK +    +   
Sbjct: 112  DDKIKRVSRRGKKVVDESEEKELKGDRVVRRQNKNKKAKRLTLDQRISLKNNKRGDEVIP 171

Query: 1204 SKKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLV 1025
            ++K R  ++  EK+ +L REYS S D +S+DWK+M+IPPVLSSSEHAWLFKLMQPMK+L+
Sbjct: 172  TRKKRNFRNRIEKIEELIREYSVSNDFISMDWKRMRIPPVLSSSEHAWLFKLMQPMKALL 231

Query: 1024 QLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYF 845
            Q+KE+LQ+EL REP DGEL +A NM++ QV + ++VGQAARNKLIKHNLRLVLF +NKYF
Sbjct: 232  QVKEDLQKELAREPADGELADATNMSITQVKKAIDVGQAARNKLIKHNLRLVLFVINKYF 291

Query: 844  QEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVS 665
             +FAS P FQDLCQAGV GLITAIDRFEP R+ RLSTYSLFWIRHAIIRSMTLSSF RV 
Sbjct: 292  TDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFIRVP 351

Query: 664  FGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHAT 485
            FGLESVR EIQK K  L F+L+R PTEEEII+RV +SP+RY ++++ASKS++SLNSRH T
Sbjct: 352  FGLESVRAEIQKAKTELTFKLQRSPTEEEIIERVHISPERYHDIIKASKSILSLNSRHTT 411

Query: 484  TQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 305
            TQEE             D RKQPALLRLA+DDVLDSLKPKESLVIRQR+GLDGKGDRTLG
Sbjct: 412  TQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLG 471

Query: 304  EIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            EIAGNLNISREMVRKHE+KALMKL H  R+DY+R+Y+
Sbjct: 472  EIAGNLNISREMVRKHEVKALMKLNHSARLDYLRRYV 508


>ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
          Length = 507

 Score =  577 bits (1487), Expect = e-162
 Identities = 310/517 (59%), Positives = 383/517 (74%), Gaps = 3/517 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT SSSA+RTPLGL+ +F +++   K P I+AFK +K   SA  +  + +P+ +ET 
Sbjct: 1    MGVVTVSSSAARTPLGLNTKFCNNRL--KRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
             +  KKR+    +  K         +SP + ++D NEAAA LE++Y L  A         
Sbjct: 59   KKTQKKRIGKTNKLPK-------RESSPSSMDVDYNEAAAMLENLYKLSPASDNAECIDG 111

Query: 1375 XXXXXXXXXXXRNNADDDELEKVSGEVV---RSKIKKAKRLSLDKRIELKRHSEEKKTPL 1205
                           D+ E +++ G+ V   ++K KK KRL+LD+RI LK +    +   
Sbjct: 112  KIKRVSRRGKKV--VDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSGDEVIP 169

Query: 1204 SKKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLV 1025
            ++K R V ++ EK+ +L REYS STD VS+DWK+M+IPPVLSSSEHAWLFKLMQPMK+L+
Sbjct: 170  TRKKRNVGNKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALL 229

Query: 1024 QLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYF 845
            Q+KE+LQ+EL REP DGEL +A NM++ QV + ++VGQAARNKLIKHNLRLVLF +NKYF
Sbjct: 230  QVKEDLQQELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFVINKYF 289

Query: 844  QEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVS 665
             +FAS P FQDLCQAGV GLITAIDRFEP R+ RLSTYSLFWIRHAIIRSMTLS+FTRV 
Sbjct: 290  TDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVP 349

Query: 664  FGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHAT 485
            FGLESVR EIQK K  L FEL+R PTEEEII+RV +SP+RY +V++ASKS++SLNSRH T
Sbjct: 350  FGLESVRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTT 409

Query: 484  TQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 305
            TQEE             D RKQPALLRLA+DDVLDSLKPKESLVIRQR+GLDGKGDRTLG
Sbjct: 410  TQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLG 469

Query: 304  EIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            EIAGNLNISREMVRKHE+KALMKLKH  R+DY+R+Y+
Sbjct: 470  EIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYV 506


>ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            [Glycine max] gi|382365034|dbj|BAM05478.1| sigma-like
            factor 5B [Glycine max]
          Length = 507

 Score =  575 bits (1481), Expect = e-161
 Identities = 309/517 (59%), Positives = 382/517 (73%), Gaps = 3/517 (0%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT SSSA+RTPLGL+ +F +++   K P I+AFK +K   SA  +  + +P+ +ET 
Sbjct: 1    MGVVTVSSSAARTPLGLNTKFCNNRL--KRPLIVAFKGDKHNDSALVATQEKIPVPVETA 58

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
             +  KKR+    +  K         +SP + ++D NEAAA LE++Y L  A         
Sbjct: 59   KKTQKKRIGKTNKLPK-------RESSPSSMDVDYNEAAAMLENLYKLSPASDNAECIDG 111

Query: 1375 XXXXXXXXXXXRNNADDDELEKVSGEVV---RSKIKKAKRLSLDKRIELKRHSEEKKTPL 1205
                           D+ E +++ G+ V   ++K KK KRL+LD+RI LK +    +   
Sbjct: 112  KIKRVSRRGKKV--VDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSGDEVIP 169

Query: 1204 SKKNRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLV 1025
            ++K R V ++ EK+ +L REYS STD VS+DWK+M+IPPVLSSSEHAWLFKLMQPMK+L+
Sbjct: 170  TRKKRNVGNKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALL 229

Query: 1024 QLKENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYF 845
            Q+KE+LQ+EL REP DGEL +A NM++ QV + ++VGQAARNKLIKHNLRLVLF +NKYF
Sbjct: 230  QVKEDLQQELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFVINKYF 289

Query: 844  QEFASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVS 665
             +FAS P FQDLCQAGV GLITAIDRFEP R+ RLSTYSLFWIRHAIIRSMTLS+FTRV 
Sbjct: 290  TDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVP 349

Query: 664  FGLESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHAT 485
            FGLESVR EIQK K  L FEL+R PTEEEII+RV +SP+RY +V++ASKS++SLNSRH T
Sbjct: 350  FGLESVRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTT 409

Query: 484  TQEELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 305
            TQEE             D RKQPALLRLA+DDVLDSLKPKESLVIR R+GLDGKGDRTLG
Sbjct: 410  TQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRXRFGLDGKGDRTLG 469

Query: 304  EIAGNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            EIAGNLNISREMVRKHE+KALMKLKH  R+DY+R+Y+
Sbjct: 470  EIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYV 506


>gb|ESW33340.1| hypothetical protein PHAVU_001G061400g [Phaseolus vulgaris]
          Length = 511

 Score =  574 bits (1479), Expect = e-161
 Identities = 304/514 (59%), Positives = 386/514 (75%)
 Frame = -2

Query: 1735 MGVVTASSSASRTPLGLDKRFSSHQSVSKSPFILAFKTNKPRKSASGSPCKPVPLRIETT 1556
            MGVVT S+SA+RTPL L  +  S Q   K   I+AFK NK  K+   SP + +PL +ET 
Sbjct: 1    MGVVTVSTSAARTPLRLSTKLISLQQAHKRLLIVAFKGNKLNKTTLVSPKEQIPLPLETA 60

Query: 1555 GEEHKKRLAVVAQPSKGIQAVSAHVASPYTSELDLNEAAAKLESIYNLKSAXXXXXXXXX 1376
             ++H+KR+       K ++AVS    +P+T ++D NEAAAKLE+IY L S          
Sbjct: 61   -KKHRKRIGKTNDSVKRVRAVSTDETTPFTLDVDYNEAAAKLENIYKLSSVSSTCDTEDI 119

Query: 1375 XXXXXXXXXXXRNNADDDELEKVSGEVVRSKIKKAKRLSLDKRIELKRHSEEKKTPLSKK 1196
                       +N  D+ + ++  G VVR++ KKAKRLSLDKRI LKR+ +++    ++K
Sbjct: 120  DSKTKRVLRRRKNVGDEHD-DRNDGSVVRNQNKKAKRLSLDKRIALKRNPKQEVIVQAQK 178

Query: 1195 NRAVKDEDEKMTKLAREYSGSTDLVSLDWKKMKIPPVLSSSEHAWLFKLMQPMKSLVQLK 1016
             R V +  E +  L REYS STDLVS+DWKK+KIPPVL SSEHAWLFKLM+PMK L+Q++
Sbjct: 179  KRDV-NRIENIDALIREYSASTDLVSMDWKKIKIPPVLPSSEHAWLFKLMEPMKELLQVR 237

Query: 1015 ENLQRELGREPTDGELGEAVNMTVAQVTRHMEVGQAARNKLIKHNLRLVLFSMNKYFQEF 836
            E+LQ E+G+E +DGEL +A +++V QV + +EVGQAARNKLIKHNLRLVLF +NKYFQ+F
Sbjct: 238  EDLQ-EVGKEISDGELADANSISVIQVRKALEVGQAARNKLIKHNLRLVLFVINKYFQDF 296

Query: 835  ASSPNFQDLCQAGVSGLITAIDRFEPKRKLRLSTYSLFWIRHAIIRSMTLSSFTRVSFGL 656
            AS P FQDLCQAGV GLITAIDRFE KR+L+LSTYSLFWIRH+I+RS+TLSS TRV FGL
Sbjct: 297  ASGPRFQDLCQAGVKGLITAIDRFESKRRLQLSTYSLFWIRHSIVRSITLSSLTRVPFGL 356

Query: 655  ESVRVEIQKVKLHLMFELKRMPTEEEIIQRVGLSPQRYREVMRASKSVISLNSRHATTQE 476
            + VR +I + KL L FEL+R PTE+E+++R+G+SP+RY +V++ASK +ISL+SRH  TQE
Sbjct: 357  DRVRADIHRAKLELRFELQRSPTEKEVVERIGISPERYYDVLKASKPIISLHSRHIVTQE 416

Query: 475  ELXXXXXXXXXXXXDKRKQPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 296
            E             D R+Q A+LRLA+DDVLDSLKPKESLV+RQRYGLDGKGDRTLGEIA
Sbjct: 417  EFINGITDLDGVDGDNRRQLAVLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIA 476

Query: 295  GNLNISREMVRKHEMKALMKLKHPTRMDYVRQYI 194
            GNLNISREMVRKHE+KALMKLKHP R+DY+R+Y+
Sbjct: 477  GNLNISREMVRKHEVKALMKLKHPARLDYLRRYV 510