BLASTX nr result
ID: Rheum21_contig00001961
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00001961
(686 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002879729.1| plastid-specific ribosomal protein 4 [Arabid... 70 6e-10
ref|XP_006411016.1| hypothetical protein EUTSA_v10017376mg [Eutr... 69 1e-09
ref|XP_006296531.1| hypothetical protein CARUB_v10025723mg [Caps... 69 1e-09
ref|NP_181349.1| plastid-specific ribosomal protein 4 [Arabidop... 69 1e-09
gb|ESW05912.1| hypothetical protein PHAVU_010G003200g [Phaseolus... 69 2e-09
sp|P47910.2|RR31_SPIOL RecName: Full=30S ribosomal protein S31, ... 68 3e-09
gb|ESW24913.1| hypothetical protein PHAVU_004G171400g [Phaseolus... 67 5e-09
emb|CAN83819.1| hypothetical protein VITISV_030951 [Vitis vinifera] 66 1e-08
gb|EOY07263.1| Plastid-specific ribosomal protein 4 [Theobroma c... 65 3e-08
ref|XP_003516947.1| PREDICTED: 30S ribosomal protein S31, chloro... 62 1e-07
ref|XP_002274396.2| PREDICTED: 30S ribosomal protein S31, chloro... 62 2e-07
ref|XP_003604650.1| 30S ribosomal protein S31 [Medicago truncatu... 62 2e-07
ref|XP_006355664.1| PREDICTED: 30S ribosomal protein S31, chloro... 61 4e-07
ref|XP_004239932.1| PREDICTED: 30S ribosomal protein S31, chloro... 60 5e-07
ref|XP_002531346.1| structural constituent of ribosome, putative... 60 5e-07
ref|XP_006848174.1| hypothetical protein AMTR_s00029p00235620 [A... 60 8e-07
ref|XP_004147884.1| PREDICTED: 30S ribosomal protein S31, chloro... 60 8e-07
gb|ABR17141.1| unknown [Picea sitchensis] gi|224285069|gb|ACN402... 60 8e-07
gb|ABK23830.1| unknown [Picea sitchensis] 60 8e-07
gb|ABK21808.1| unknown [Picea sitchensis] 60 8e-07
>ref|XP_002879729.1| plastid-specific ribosomal protein 4 [Arabidopsis lyrata subsp.
lyrata] gi|297325568|gb|EFH55988.1| plastid-specific
ribosomal protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 114
Score = 70.1 bits (170), Expect = 6e-10
Identities = 43/114 (37%), Positives = 52/114 (45%)
Frame = +3
Query: 63 MASLILGTSSMAVQXXXXXXXXXXXKCISGVSLSIPLRNLAIXXXXXXXXXXXIYCGRGD 242
MASLILG +GVSLS ++ +YCGRGD
Sbjct: 1 MASLILGAPPRVTVALSSSRLSSSHSETAGVSLSCSTHQFSLSTSSSSSIPL-VYCGRGD 59
Query: 243 RKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIND 404
RKTAKGKRF HSFGNARP + FEN EK+KI+I++
Sbjct: 60 RKTAKGKRFNHSFGNARPRNKNKGRGPERVPVPPAPPRKDKFENDEKIKIDIDE 113
>ref|XP_006411016.1| hypothetical protein EUTSA_v10017376mg [Eutrema salsugineum]
gi|557112185|gb|ESQ52469.1| hypothetical protein
EUTSA_v10017376mg [Eutrema salsugineum]
Length = 149
Score = 69.3 bits (168), Expect = 1e-09
Identities = 46/119 (38%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Frame = +3
Query: 63 MASLILG-----TSSMAVQXXXXXXXXXXXKCISGVSLSIPLRNLAIXXXXXXXXXXXIY 227
MASL+LG T ++++ K ISGVSLS L++ +Y
Sbjct: 28 MASLLLGAPPRVTVALSLSTSSSRLSSSHSK-ISGVSLSCFTHQLSLSDSSSSSIPL-VY 85
Query: 228 CGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIND 404
CGRGDRKTAKGKRF HSFGNARP + FEN +K+KI+I++
Sbjct: 86 CGRGDRKTAKGKRFNHSFGNARPRNKNKGRGPQRVPVPPAPPRKDKFENDDKIKIDIDE 144
>ref|XP_006296531.1| hypothetical protein CARUB_v10025723mg [Capsella rubella]
gi|482565239|gb|EOA29429.1| hypothetical protein
CARUB_v10025723mg [Capsella rubella]
Length = 118
Score = 69.3 bits (168), Expect = 1e-09
Identities = 43/114 (37%), Positives = 53/114 (46%)
Frame = +3
Query: 63 MASLILGTSSMAVQXXXXXXXXXXXKCISGVSLSIPLRNLAIXXXXXXXXXXXIYCGRGD 242
MASLILG +GVSLS + ++ +YCGRGD
Sbjct: 1 MASLILGAPPRVTVAISSSRLSSSQSETAGVSLSCFTQQFSLSASSSSSIPL-VYCGRGD 59
Query: 243 RKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIND 404
RKTAKGKRF HSFGNARP + FEN EK+KI+I++
Sbjct: 60 RKTAKGKRFNHSFGNARPRNKNKGRGPERVPVPPAPPRKDKFENDEKIKIDIDE 113
>ref|NP_181349.1| plastid-specific ribosomal protein 4 [Arabidopsis thaliana]
gi|75275034|sp|O80439.1|RR31_ARATH RecName: Full=30S
ribosomal protein S31, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 4;
Short=PSRP-4; Flags: Precursor
gi|7578852|gb|AAF64153.1|AF236826_1 plastid-specific
ribosomal protein 4 precursor [Arabidopsis thaliana]
gi|3335362|gb|AAC27163.1| 30S ribosomal protein S31
[Arabidopsis thaliana] gi|15529182|gb|AAK97685.1|
At2g38140/F16M14.7 [Arabidopsis thaliana]
gi|16974357|gb|AAL31104.1| At2g38140/F16M14.7
[Arabidopsis thaliana] gi|21618289|gb|AAM67339.1| 30S
ribosomal protein S31 [Arabidopsis thaliana]
gi|330254400|gb|AEC09494.1| plastid-specific ribosomal
protein 4 [Arabidopsis thaliana]
Length = 118
Score = 68.9 bits (167), Expect = 1e-09
Identities = 43/114 (37%), Positives = 52/114 (45%)
Frame = +3
Query: 63 MASLILGTSSMAVQXXXXXXXXXXXKCISGVSLSIPLRNLAIXXXXXXXXXXXIYCGRGD 242
MASLILG +GVSLS ++ +YCGRGD
Sbjct: 1 MASLILGAPPRVTVALPSSRLSSSHSETAGVSLSCFTHQFSLSTSSSSSIPL-VYCGRGD 59
Query: 243 RKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIND 404
RKTAKGKRF HSFGNARP + FEN EK+KI+I++
Sbjct: 60 RKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDE 113
>gb|ESW05912.1| hypothetical protein PHAVU_010G003200g [Phaseolus vulgaris]
Length = 121
Score = 68.6 bits (166), Expect = 2e-09
Identities = 37/83 (44%), Positives = 43/83 (51%)
Frame = +3
Query: 156 SLSIPLRNLAIXXXXXXXXXXXIYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXX 335
SLS P +L+ +YCGRGDRKTAKGKRFAHSFGNARP
Sbjct: 34 SLSTPFPSLSASATSNLSLTPSVYCGRGDRKTAKGKRFAHSFGNARPKDKKKGRGPPRIY 93
Query: 336 XXXXXXXXXXFENTEKVKIEIND 404
FE+ E VKIEI++
Sbjct: 94 APPAPSKKNRFEDNEVVKIEIDE 116
>sp|P47910.2|RR31_SPIOL RecName: Full=30S ribosomal protein S31, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 4;
Short=PSRP-4; Flags: Precursor
gi|7578854|gb|AAF64154.1|AF236825_1 plastid-specific
ribosomal protein 4 precursor [Spinacia oleracea]
Length = 101
Score = 67.8 bits (164), Expect = 3e-09
Identities = 40/78 (51%), Positives = 44/78 (56%)
Frame = +3
Query: 63 MASLILGTSSMAVQXXXXXXXXXXXKCISGVSLSIPLRNLAIXXXXXXXXXXXIYCGRGD 242
MASL+LGT SMA + ++GVSLS P IYCGRGD
Sbjct: 1 MASLLLGTPSMACHSVSFSFSHS--QSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGD 58
Query: 243 RKTAKGKRFAHSFGNARP 296
RKTAKGKRF HSFGNARP
Sbjct: 59 RKTAKGKRFNHSFGNARP 76
>gb|ESW24913.1| hypothetical protein PHAVU_004G171400g [Phaseolus vulgaris]
Length = 121
Score = 67.0 bits (162), Expect = 5e-09
Identities = 36/82 (43%), Positives = 42/82 (51%)
Frame = +3
Query: 159 LSIPLRNLAIXXXXXXXXXXXIYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXX 338
LS P +L+ +YCGRGDRKTAKGKRFAHSFGNARP
Sbjct: 35 LSTPFPSLSASATSTLSPTPSVYCGRGDRKTAKGKRFAHSFGNARPKDKKKGRGPPRIYA 94
Query: 339 XXXXXXXXXFENTEKVKIEIND 404
FE+ E VKIEI++
Sbjct: 95 PPAPSKRDRFEDNEVVKIEIDE 116
>emb|CAN83819.1| hypothetical protein VITISV_030951 [Vitis vinifera]
Length = 117
Score = 65.9 bits (159), Expect = 1e-08
Identities = 40/114 (35%), Positives = 57/114 (50%)
Frame = +3
Query: 63 MASLILGTSSMAVQXXXXXXXXXXXKCISGVSLSIPLRNLAIXXXXXXXXXXXIYCGRGD 242
MA+LILG ++A Q + + +++S R +++ +YCGRGD
Sbjct: 1 MAALILGAPAIAPQSLNLSSRFSFSQSET-LAVSFDTRFVSLSISATSPPIPSVYCGRGD 59
Query: 243 RKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIND 404
+KTAKGKRF HSFGNARP + FE+ E VKIEI++
Sbjct: 60 KKTAKGKRFNHSFGNARPRNKKKGRGPPRAPIPPSPPKKDRFEDDEVVKIEIDE 113
>gb|EOY07263.1| Plastid-specific ribosomal protein 4 [Theobroma cacao]
Length = 121
Score = 64.7 bits (156), Expect = 3e-08
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 63 MASLILGTSSMAVQXXXXXXXXXXXKCIS---GVSLSIPLRNLAIXXXXXXXXXXXIYCG 233
MASL+LG + + Q S G SLS+ ++++ +YCG
Sbjct: 1 MASLLLGAAPVPAQSVNLSSLSRISSSHSQTLGTSLSVSTSSVSLSTASSPSIPY-VYCG 59
Query: 234 RGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIND 404
RGD+KT KGKRF HSFGNARP + F++ EK+KIEI++
Sbjct: 60 RGDKKTKKGKRFNHSFGNARPRNKKKGRGPPRVPIPPSPPRKDKFDDDEKIKIEIDE 116
>ref|XP_003516947.1| PREDICTED: 30S ribosomal protein S31, chloroplastic-like [Glycine
max]
Length = 121
Score = 62.4 bits (150), Expect = 1e-07
Identities = 31/61 (50%), Positives = 35/61 (57%)
Frame = +3
Query: 222 IYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIN 401
+YCGRGDRKTAKGKRFAHSFGNARP E+ E VKIEI+
Sbjct: 56 VYCGRGDRKTAKGKRFAHSFGNARPKDKKKGRGPLRPYAPPAPSKKDRLEDNEVVKIEID 115
Query: 402 D 404
+
Sbjct: 116 E 116
>ref|XP_002274396.2| PREDICTED: 30S ribosomal protein S31, chloroplastic-like [Vitis
vinifera] gi|297740225|emb|CBI30407.3| unnamed protein
product [Vitis vinifera]
Length = 118
Score = 62.0 bits (149), Expect = 2e-07
Identities = 42/115 (36%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +3
Query: 63 MASLILGTSSMAVQXXXXXXXXXXXKCIS-GVSLSIPLRNLAIXXXXXXXXXXXIYCGRG 239
MA+LILG ++A Q + + VS +L+I +YCGRG
Sbjct: 1 MAALILGAPAIAPQSLNLSSRFSFSQSETLAVSFDTRFVSLSISATSPPPIPS-VYCGRG 59
Query: 240 DRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIND 404
D+KTAKGKRF HSFGNARP + FE+ E VKIEI++
Sbjct: 60 DKKTAKGKRFNHSFGNARPRNKKKGRGPPRAPIPPSPPKKDRFEDDEVVKIEIDE 114
>ref|XP_003604650.1| 30S ribosomal protein S31 [Medicago truncatula]
gi|355505705|gb|AES86847.1| 30S ribosomal protein S31
[Medicago truncatula]
Length = 123
Score = 61.6 bits (148), Expect = 2e-07
Identities = 29/61 (47%), Positives = 36/61 (59%)
Frame = +3
Query: 222 IYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIN 401
+YCGRGDRKTAKGKRF+HSFGNARP + E+ E ++IEIN
Sbjct: 58 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGTGPPRIYAPPDATKKEKLEDKEVIEIEIN 117
Query: 402 D 404
+
Sbjct: 118 E 118
>ref|XP_006355664.1| PREDICTED: 30S ribosomal protein S31, chloroplastic-like [Solanum
tuberosum]
Length = 121
Score = 60.8 bits (146), Expect = 4e-07
Identities = 30/61 (49%), Positives = 36/61 (59%)
Frame = +3
Query: 222 IYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIN 401
IYCGRGD+KTAKGKRF HSFGNARP + F++ + VKIEI+
Sbjct: 60 IYCGRGDKKTAKGKRFNHSFGNARPRNKKKGRGPPRVAAPPAAPKRDPFDDGQVVKIEIH 119
Query: 402 D 404
D
Sbjct: 120 D 120
>ref|XP_004239932.1| PREDICTED: 30S ribosomal protein S31, chloroplastic-like [Solanum
lycopersicum]
Length = 121
Score = 60.5 bits (145), Expect = 5e-07
Identities = 29/61 (47%), Positives = 36/61 (59%)
Frame = +3
Query: 222 IYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIN 401
+YCGRGD+KTAKGKRF HSFGNARP + F++ + VKIEI+
Sbjct: 60 VYCGRGDKKTAKGKRFNHSFGNARPRNKKKGRGPPRVAAPPAAPKRDPFDDGQVVKIEIH 119
Query: 402 D 404
D
Sbjct: 120 D 120
>ref|XP_002531346.1| structural constituent of ribosome, putative [Ricinus communis]
gi|223529044|gb|EEF31030.1| structural constituent of
ribosome, putative [Ricinus communis]
Length = 116
Score = 60.5 bits (145), Expect = 5e-07
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 150 GVSLSIPLRNLAIXXXXXXXXXXX-IYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXX 326
G+S S + +L++ +YCGRGD+KTAKGKRF HSFGNARP +
Sbjct: 28 GISFSYSIPSLSVSTTTASTSPIPFVYCGRGDKKTAKGKRFNHSFGNARPRNKNKGRGPP 87
Query: 327 XXXXXXXXXXXXXFENTEKVKIEIND 404
FE+ E VKI+I++
Sbjct: 88 RIPVPSSPPTNDIFEDGEVVKIDIDE 113
>ref|XP_006848174.1| hypothetical protein AMTR_s00029p00235620 [Amborella trichopoda]
gi|548851479|gb|ERN09755.1| hypothetical protein
AMTR_s00029p00235620 [Amborella trichopoda]
Length = 120
Score = 59.7 bits (143), Expect = 8e-07
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +3
Query: 222 IYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIN 401
++CGRGDRKTAKGKRF+HSFGNARP + F++ E VKI+I+
Sbjct: 55 VFCGRGDRKTAKGKRFSHSFGNARPRNKKKGRGPPRVPAPPLPPKKDRFDDGEVVKIQID 114
Query: 402 D 404
+
Sbjct: 115 E 115
>ref|XP_004147884.1| PREDICTED: 30S ribosomal protein S31, chloroplastic-like [Cucumis
sativus] gi|449520074|ref|XP_004167059.1| PREDICTED: 30S
ribosomal protein S31, chloroplastic-like [Cucumis
sativus]
Length = 118
Score = 59.7 bits (143), Expect = 8e-07
Identities = 30/76 (39%), Positives = 39/76 (51%)
Frame = +3
Query: 177 NLAIXXXXXXXXXXXIYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXX 356
+LAI IYCGRGD+KT +GKRF HS+GNARP
Sbjct: 38 SLAISTPSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPR 97
Query: 357 XXXFENTEKVKIEIND 404
F++ EK+KIEI++
Sbjct: 98 KDKFDDNEKIKIEIDE 113
>gb|ABR17141.1| unknown [Picea sitchensis] gi|224285069|gb|ACN40262.1| unknown
[Picea sitchensis] gi|224287004|gb|ACN41203.1| unknown
[Picea sitchensis]
Length = 112
Score = 59.7 bits (143), Expect = 8e-07
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +3
Query: 222 IYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIN 401
+YCGRGD++TAKGKRF HSFGNARP F++ EK++IEI+
Sbjct: 48 VYCGRGDKRTAKGKRFKHSFGNARPRDNKKGRGLPITPLPPGAPKKDLFDDGEKIEIEID 107
Query: 402 D 404
+
Sbjct: 108 E 108
>gb|ABK23830.1| unknown [Picea sitchensis]
Length = 112
Score = 59.7 bits (143), Expect = 8e-07
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +3
Query: 222 IYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIN 401
+YCGRGD++TAKGKRF HSFGNARP F++ EK++IEI+
Sbjct: 48 VYCGRGDKRTAKGKRFKHSFGNARPRDNKKGRGLPITPLPPGAPKKDLFDDGEKIEIEID 107
Query: 402 D 404
+
Sbjct: 108 E 108
>gb|ABK21808.1| unknown [Picea sitchensis]
Length = 112
Score = 59.7 bits (143), Expect = 8e-07
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +3
Query: 222 IYCGRGDRKTAKGKRFAHSFGNARPHSXXXXXXXXXXXXXXXXXXXXXFENTEKVKIEIN 401
+YCGRGD++TAKGKRF HSFGNARP F++ EK++IEI+
Sbjct: 48 VYCGRGDKRTAKGKRFKHSFGNARPRDNKKGRGLPITPLPPGAPKKDLFDDGEKIEIEID 107
Query: 402 D 404
+
Sbjct: 108 E 108