BLASTX nr result
ID: Rheum21_contig00000972
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00000972
(3392 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca... 972 0.0
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata] 961 0.0
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus] 960 0.0
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata] 931 0.0
ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis... 924 0.0
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ... 923 0.0
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica] 923 0.0
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr... 918 0.0
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr... 914 0.0
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g... 912 0.0
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata] 911 0.0
dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa] 911 0.0
dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila] 908 0.0
dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis] 907 0.0
dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana] 907 0.0
ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinife... 901 0.0
dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35] 897 0.0
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v... 896 0.0
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr... 895 0.0
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom... 894 0.0
>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
isoform 1 [Theobroma cacao]
Length = 904
Score = 973 bits (2514), Expect = 0.0
Identities = 545/947 (57%), Positives = 630/947 (66%), Gaps = 17/947 (1%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRDVS--RQNQLDSALKGLST-RLDKPPGKHLP 515
MAVEA A K ++ G P+VF+R + S +QNQL+S +K S+ R D G+ +
Sbjct: 1 MAVEAPA-KHVYDFDDDDDDG-PVVFKRNNTSSSKQNQLNSEVKKASSQRSDGQSGRQVS 58
Query: 516 DTSNSNDRASGNSKGKVIHASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXXXP 695
D + N ++S K K I +SK S P+ KSP LS K+S
Sbjct: 59 DVRSPNGQSSNAPKNKSISSSK---SPPV---KSPILSPKAS------------------ 94
Query: 696 TSTASLVSHPEKDATV--KVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDI 869
T+S + P K V K S D + + K N +KE + + D
Sbjct: 95 --TSSTKALPVKSPVVNFKASTSLNDQSKQALKQNMTTAVKEGRSPIKGTTEPNSDDDD- 151
Query: 870 AIXXXXXXXXXXXXXXPLSSRLSIGMKNANQATKGHDTXXXXXXXXXXXXXXXXXXXXXX 1049
PLS+RL G+ +NQ KG T
Sbjct: 152 -----------DDDSLPLSARLK-GI--SNQGNKGASTSAPAQSRRLVPKTEVKVSAEDP 197
Query: 1050 ---------FQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFG 1202
F + NTG SSS+L+ D KPL SK QQNG I + QQN++++ +
Sbjct: 198 DDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQNSSTLSGKRPLD 257
Query: 1203 TDAVSGHXXXXXXXXXXXXXXXXDKQVSKKSEH-DDENDHIPISQRMKNSIPVK-KSTPM 1376
S H KQV+ K+E D+++DH+PI+QRMK S K + M
Sbjct: 258 KGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKADEDDDHMPIAQRMKKSTASNSKLSSM 317
Query: 1377 KQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDGQK-WSTLVHSGVIFPPSYE 1553
KQ TKV SS F + Y S+K PP+SGDGQK WSTLVH+GVIFP Y
Sbjct: 318 KQKTTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLVHNGVIFPSPYT 377
Query: 1554 PHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQA 1733
PHGVKMLYDGRPVDLTPE EEVATM+AVM D+DY+ K +F +NF+ DW KLLGKNHTI+
Sbjct: 378 PHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWSKLLGKNHTIKD 437
Query: 1734 LSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVE 1913
L +CDFTPI +WHL+ +MWAIVDGVKEKVGNFRVE
Sbjct: 438 LDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEEKLKQEEKFMWAIVDGVKEKVGNFRVE 497
Query: 1914 PPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAF 2093
PPGLFRGRGEHPKMGKLK+RI PSDITINIGKDAPIPEC IPG +WKDIKHDNTVTWLAF
Sbjct: 498 PPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGERWKDIKHDNTVTWLAF 557
Query: 2094 WNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQ 2273
WNDPINPKEFKYVFLAASS+LKGQSDKEKYEK+RMLKDYI+ IRAAYTKDF +KD+ KRQ
Sbjct: 558 WNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRAAYTKDFTTKDVMKRQ 617
Query: 2274 IAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQ 2453
IAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV+ +PPN L+FDFLGKDSI+Y
Sbjct: 618 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNT 677
Query: 2454 FEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDN 2633
E E VYKA+ QF+ GK SDDLFD LDTSKLNAHLKELMPGLTAKVFRTYNASITLD
Sbjct: 678 VEVELPVYKAIGQFQTGKSKSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDE 737
Query: 2634 MLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSEL 2813
ML K KDGD A KV Y ANKEVAIICNHQRS+SKSHSAQM RLTEKI ELK L EL
Sbjct: 738 MLNKETKDGDVAEKVVVYQRANKEVAIICNHQRSISKSHSAQMSRLTEKITELKGVLKEL 797
Query: 2814 ETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALG 2993
+ D+ RAKKGKPPLK DGK+KRNLTP+AI+KK+ QT AKIEKMERDM+TKED+K +ALG
Sbjct: 798 KIDLDRAKKGKPPLKDADGKQKRNLTPQAIQKKIDQTNAKIEKMERDMQTKEDLKTVALG 857
Query: 2994 TSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
TS+INYLDPRITVAWCKR+EVPIEKIFNKSLLAKFAWAMD DP FRF
Sbjct: 858 TSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPDFRF 904
>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
Length = 894
Score = 961 bits (2484), Expect = 0.0
Identities = 534/945 (56%), Positives = 623/945 (65%), Gaps = 15/945 (1%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRDV-SRQNQLDSALKGLSTRLDKPPGKHLPDT 521
MAV+AC +KM P+VF+R + S+ NQL+S K S R D G+ + D
Sbjct: 1 MAVQACVKEKMMDEIDEDDE--PLVFKRSNATSKHNQLNSDTKKSSQRYDGQSGRQVSDV 58
Query: 522 SNSNDRASGNSKGKVIHASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXXXPTS 701
++N ++S SKGK S S PIA+ K+ T K
Sbjct: 59 PSTNGQSSSASKGKTTKLS--SMKSPIASPKASTSFAK---------------------- 94
Query: 702 TASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDIAIXX 881
AS V++P KV S D + K N +KEEK + A + D
Sbjct: 95 -ASPVANP------KVSSSSDDRSKHSSKQNTINVVKEEKELVNPAAEPYGDSED----- 142
Query: 882 XXXXXXXXXXXXPLSSRLSIGMK--NANQATKGHDTXXXXXXXXXXXXXXXXXXXXXX-- 1049
PLS+RL G+ ++N A KG
Sbjct: 143 ----------EKPLSARLFTGLTKGSSNNANKGLINSSPASLPVPKPEINRYSDDSDDEI 192
Query: 1050 -----FQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKR-FGTDA 1211
F+L N G S+ K Y+ D +K L S QQNG I R S+ +S+ KR G
Sbjct: 193 PLSSKFRLKANAGTSTVKSYESDDNKTLVSNFQQNGSINRGSK---SSIKVNKRPLGEVK 249
Query: 1212 VSGHXXXXXXXXXXXXXXXXDKQVSKKSE---HDDENDHIPISQRMKNSIPV-KKSTPMK 1379
S +KQ SKK+E D ++DH+PISQRMK S KS+ K
Sbjct: 250 SSVQSSVKKPKLSDASTPVNNKQASKKAEPKADDSDDDHVPISQRMKKSATSGNKSSTAK 309
Query: 1380 QTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDGQKWSTLVHSGVIFPPSYEPH 1559
Q VTKV SS + YS SSK PP+SG+G+KW+TLVH+GVIFPP Y+PH
Sbjct: 310 QKVTKVVSSSMKKASKKFKKVVKKSKYSKSSKVPPSSGEGKKWNTLVHNGVIFPPPYKPH 369
Query: 1560 GVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQALS 1739
GVKMLY G+PVDLTPE EEVATM+AVMLD+DY+ K+KF ENF +DW+K+LGKNH IQ L
Sbjct: 370 GVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMTKSKFKENFMDDWRKILGKNHVIQNLE 429
Query: 1740 KCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPP 1919
CDFTPI +WH R YMWAIV+GVKEKVGNFRVEPP
Sbjct: 430 DCDFTPIYEWHQREKEKKKKMTAEEKKVLKEERLKQEEKYMWAIVNGVKEKVGNFRVEPP 489
Query: 1920 GLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAFWN 2099
LFRGRGEHPKMGKLKK I PSDITINIGKDAPIPEC IPG WK+I+HDNTVTWLAFWN
Sbjct: 490 SLFRGRGEHPKMGKLKKCIRPSDITINIGKDAPIPECPIPGESWKEIRHDNTVTWLAFWN 549
Query: 2100 DPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQIA 2279
DPI P+EFKYVFLAASS+LKGQSDKEKYEK+R+LKD+IQGIRAAYTKDFASKD+TKRQIA
Sbjct: 550 DPIKPREFKYVFLAASSSLKGQSDKEKYEKARLLKDFIQGIRAAYTKDFASKDITKRQIA 609
Query: 2280 VATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQFE 2459
VATYLID+LALRAGNEKDDDEADTVGCCTLKVENV+P PP+IL+FDFLGKDSIRY + E
Sbjct: 610 VATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPKPPSILKFDFLGKDSIRYQNEVE 669
Query: 2460 AEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNML 2639
E VYKA++QFR GK+G DDLFD LDTSKLNAHLK LMPGLTAKVFRTYNASITLD ML
Sbjct: 670 VELPVYKAIQQFRTGKRGGDDLFDKLDTSKLNAHLKGLMPGLTAKVFRTYNASITLDEML 729
Query: 2640 VKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSELET 2819
+ K G+ A K+ Y ANKEVAIICNHQR+VSKSH AQM RL KI+ELK L L+T
Sbjct: 730 SRETKGGNVAEKIVVYQHANKEVAIICNHQRTVSKSHPAQMTRLNGKIDELKGILDGLQT 789
Query: 2820 DMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALGTS 2999
D+ RAKKGKPPL+ DGK KRNLTPEA+E+K+ QT AKIEKMERD +TKE +K IALGTS
Sbjct: 790 DLARAKKGKPPLEDADGKPKRNLTPEALERKIGQTNAKIEKMERDKETKEGLKTIALGTS 849
Query: 3000 RINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
+I+YLDPRITVAWCKR+EVPIEK+FNKSLLAKFAW+MD DPSFRF
Sbjct: 850 KISYLDPRITVAWCKRHEVPIEKVFNKSLLAKFAWSMDVDPSFRF 894
>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 960 bits (2481), Expect = 0.0
Identities = 531/944 (56%), Positives = 622/944 (65%), Gaps = 14/944 (1%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRD-VSRQNQLDSALKGLST-RLDKPPGKHLPD 518
MAVEAC T + PIVF+R + S+Q+Q +S + +S+ + D + + D
Sbjct: 1 MAVEACPTPNL--RDDMDEDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYD 58
Query: 519 TSNSNDRASGNSKGKVIHASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXXXPT 698
+ +N +S KG+++ SKPS K SP S PP+ P+
Sbjct: 59 SRPANGESSSGQKGRMVPPSKPSQVK------SPLSS------PPSK-----------PS 95
Query: 699 STASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEE---KRKRDMAVKEEKPKRDI 869
S +S P K +T + S + + KP+ + K + + K +KEEK
Sbjct: 96 QVKSPLSSP-KVSTSSAKKSPVSSLPANSKPSTSGSFKVKPFNQHKSATVIKEEKSSPLR 154
Query: 870 AIXXXXXXXXXXXXXXPLSSRLSIGMK--NANQATKGHDTXXXXXXXXXXXXXXXXXXXX 1043
PLS R S N NQ +K
Sbjct: 155 LASAIINDSEDSDDGKPLSLRHSASSSKGNTNQVSK-------EGSKPENEDSDDEKPLS 207
Query: 1044 XXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVSGH 1223
F L G S+SK Y D DKPL K Q NG RD Q N S + KR D S +
Sbjct: 208 SRFPLKSGVGESTSKAYDSDDDKPLAKKLQHNGSAMRDGQPNKYSNMSNKRPPGDIKSSN 267
Query: 1224 XXXXXXXXXXXXXXXXDK-QVSKKSE---HDDENDHIPISQRMKNS-IPVKKSTPMKQTV 1388
+K Q S K E DD++DH+PISQR+K S KS+ +K+T
Sbjct: 268 QLSVKKPKLSSVTAPTNKKQASVKPEPKAEDDDDDHLPISQRIKKSPTSESKSSSIKKT- 326
Query: 1389 TKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDGQKWSTLVHSGVIFPPSYEPHGVK 1568
TKV SS + YS SSK PP+SG+G+KW+ L H+GVIFPP Y+PHG+K
Sbjct: 327 TKVVSSSVKKVNKKSKKVMKNSKYSKSSKVPPSSGEGKKWNKLEHNGVIFPPPYKPHGIK 386
Query: 1569 MLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQALSKCD 1748
MLY G+PVDLTPE EEVATM+AVMLD+DY+ K +F ENFF DWKK+LGKNH IQ L CD
Sbjct: 387 MLYKGKPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENFFGDWKKILGKNHVIQNLENCD 446
Query: 1749 FTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLF 1928
F+PI +WH YMWA VDG KEKVGNFRVEPPGLF
Sbjct: 447 FSPIYEWHQSEKEKKKQMTTEEKKALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPPGLF 506
Query: 1929 RGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAFWNDPI 2108
RGRGEHPKMGKLKKRI P DITINIGKDAPIPEC +PG +WK+++HDNTVTWLAFWNDPI
Sbjct: 507 RGRGEHPKMGKLKKRIRPCDITINIGKDAPIPECPVPGERWKEVRHDNTVTWLAFWNDPI 566
Query: 2109 NPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQIAVAT 2288
NPKEFKYVFLAASSTLKG SDKEKYEK+R+LKDYIQGIRAAYTKDFASKD TK+QIAVAT
Sbjct: 567 NPKEFKYVFLAASSTLKGLSDKEKYEKARLLKDYIQGIRAAYTKDFASKDPTKKQIAVAT 626
Query: 2289 YLIDRLALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQFEAEP 2468
YLID+LALRAGNEKDDDEADTVGCCTLKVENV+P+PPNIL+FDFLGKDSIRY + E E
Sbjct: 627 YLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEA 686
Query: 2469 LVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNMLVKA 2648
V+KA++QFR GK+GS DLFD+LDTSKLNAHLKELMPGLTAKVFRTYNASITLD+ML +
Sbjct: 687 AVFKAIQQFRSGKEGSSDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRE 746
Query: 2649 AKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSELETDMV 2828
K GD A KV Y ANKEVAIICNHQR+VSKSHSAQM RL EKI ELK + EL++D+
Sbjct: 747 TKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMLRLNEKIEELKAVVEELKSDLS 806
Query: 2829 RAKKGKPPLKS--PDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALGTSR 3002
R KKGKPPLKS DGK KRNL PE++EKK+ QT AKIEKMERD +TKED+K +ALGTS+
Sbjct: 807 RVKKGKPPLKSKNADGKPKRNLNPESLEKKIAQTNAKIEKMERDKETKEDLKTVALGTSK 866
Query: 3003 INYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
INYLDPRITVAWCKR+EVPIEKIFNKSLLAKF WAMD DPSFRF
Sbjct: 867 INYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPSFRF 910
>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
Length = 925
Score = 931 bits (2407), Expect = 0.0
Identities = 519/967 (53%), Positives = 612/967 (63%), Gaps = 37/967 (3%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRR-RDVSRQNQLDSALKGLST-RLDKPPGKHLPD 518
MAVEAC T M G P++F+R + +QNQ +S K LS + D H D
Sbjct: 1 MAVEACTTNLM---EDMEDDGGPVIFKRSKPAPKQNQANSEKKKLSLQKQDGQSAVHTSD 57
Query: 519 TSNSNDRASGNSKGKVIHASK-PSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXXXP 695
+N +S KG++ ++K P P+++ K+ S K+S P
Sbjct: 58 VRPANGESSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKAS-----------------P 100
Query: 696 TSTASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDIAI 875
++ S P AT +TAK + +K + E PK +
Sbjct: 101 ITSPGANSKPSASAT---------STAKQQNHHKSSAAFIE------------PKPSVPA 139
Query: 876 XXXXXXXXXXXXXXPLSSRL----SIGMKNANQATKGHDTXXXXXXXXXXXXXXXXXXXX 1043
PLS+R S G N G
Sbjct: 140 AKANSNSESSDDEKPLSARTFGCSSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLS 199
Query: 1044 XXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS-G 1220
F + G S+SK Y D KPL +K QQNG RD N ++ + KR +A S
Sbjct: 200 CRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRDGPMNKSASLSNKRPPGEAKSLN 259
Query: 1221 HXXXXXXXXXXXXXXXXDKQVSKKSE--------------------------HDDENDHI 1322
+KQ + K E DD++D++
Sbjct: 260 QSSVKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQSATSKPKDDDDDNV 319
Query: 1323 PISQRMKNS--IPVKKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASGD 1496
PISQR+K S K S P+K+ T V SSL + Y+ SSK PP SG+
Sbjct: 320 PISQRIKKSPASVSKSSVPVKKASTVVSSSL-KKVNKNSKKVIKKTAYTKSSKVPPGSGE 378
Query: 1497 GQKWSTLVHSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFN 1676
GQKW+TLVH+GVIFPP Y+PHGVKMLY +P+ LTPE EEVATM+AVMLD+DY+ K F
Sbjct: 379 GQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPCFK 438
Query: 1677 ENFFNDWKKLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXX 1856
ENFF+DWKK+LGKNH IQ L CDF PI +WH +
Sbjct: 439 ENFFSDWKKILGKNHMIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEK 498
Query: 1857 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECHI 2036
YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI P DITINIGKDAPIPEC I
Sbjct: 499 YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPI 558
Query: 2037 PGAKWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQ 2216
PG +WK++++ NTVTWLA+WNDPIN KEFKYVFLAASSTLKGQSDKEKYEK+R+LKDYI
Sbjct: 559 PGERWKEVRNGNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIH 618
Query: 2217 GIRAAYTKDFA-SKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVKPL 2393
GIRAAYTKDF +KD K+QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV+P+
Sbjct: 619 GIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPV 678
Query: 2394 PPNILEFDFLGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKEL 2573
PPNIL+FDFLGKDSIRY + + EP V+KA++QFR GK+GS+DLFD LDTSKLNAHLKEL
Sbjct: 679 PPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKEL 738
Query: 2574 MPGLTAKVFRTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSHS 2753
MPGLTAKVFRTYNASITLD+ML K K G+ A V Y ANKEVAIICNHQR+VSKSHS
Sbjct: 739 MPGLTAKVFRTYNASITLDDMLSKETKGGEVAENVVVYQHANKEVAIICNHQRTVSKSHS 798
Query: 2754 AQMERLTEKINELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKAK 2933
AQM RL EKI+ELK AL EL+TD+ RAKKGKPP K DGK KRNL PEA+E+K+ QT AK
Sbjct: 799 AQMSRLNEKIDELKTALEELKTDLSRAKKGKPPTKGADGKAKRNLNPEALERKITQTNAK 858
Query: 2934 IEKMERDMKTKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMD 3113
IEKMERD +TKED+K +ALGTS+INYLDPRITVAWCKR+EVPIEKIFNKSLLAKFAW+MD
Sbjct: 859 IEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMD 918
Query: 3114 ADPSFRF 3134
DPSFRF
Sbjct: 919 VDPSFRF 925
>ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
gi|449503189|ref|XP_004161878.1| PREDICTED: DNA
topoisomerase 1-like [Cucumis sativus]
Length = 889
Score = 924 bits (2387), Expect = 0.0
Identities = 521/940 (55%), Positives = 609/940 (64%), Gaps = 10/940 (1%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRDVSRQNQLDSALK-GLSTRLDKPPGKHLPDT 521
MAVE MF PIVF+R SRQNQLDS +K + RL K PG+ D
Sbjct: 1 MAVETFGKAPMFDDDDED--NMPIVFKRTSASRQNQLDSEIKHSQAQRLSKLPGRQGSDL 58
Query: 522 SNSNDRASGNSKGKVIHASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXXXPTS 701
++N ++S N K S P +S + S S S + P
Sbjct: 59 CSTNGQSSNNQKRMT---SLPKTSPMRSEIGSQKASRSSPIPEPLTKSLG---------- 105
Query: 702 TASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDIAIXX 881
SL + D+ K S ++A K E + +I + D +++KP
Sbjct: 106 -TSLKASHSMDSRPK---SLVNAVVKEE----NVSINPSQENSDS--EDDKP-------- 147
Query: 882 XXXXXXXXXXXXPLSSRLSIGMK-NANQATKGH-DTXXXXXXXXXXXXXXXXXXXXXXFQ 1055
LSI +K N NQ KG T FQ
Sbjct: 148 -----------------LSIRLKGNPNQPNKGLVSTVPKNKVKKSLADSDDEVPLSSKFQ 190
Query: 1056 LNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKR--FGTDAVSGHXX 1229
+ +G SK + D KPL K QNG RD Q A V+ +KR D+ S
Sbjct: 191 MKHASGVLGSKQHGFDEKKPLVPKVHQNGSTSRDKLQKPA-VLSSKRPLPNEDSHSPSQF 249
Query: 1230 XXXXXXXXXXXXXXDKQ---VSKKSEHDDENDHIPISQRMKN-SIPVKKSTPMKQTVTKV 1397
+ + + K E DD++D IPISQRMK S V KS+ K T++KV
Sbjct: 250 PTKKPKLTDSSSPLNSKLVSLKAKQEVDDDDDDIPISQRMKKVSATVNKSSSSKPTISKV 309
Query: 1398 KSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDGQ-KWSTLVHSGVIFPPSYEPHGVKML 1574
SS + Y S+K P++GDGQ KW+TLVH+GVIFPP Y+ HGVKML
Sbjct: 310 VSSSIKKTFKKSKKPVKKSKYVKSTKLLPSAGDGQKKWTTLVHNGVIFPPPYQTHGVKML 369
Query: 1575 YDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQALSKCDFT 1754
Y G+PVDLTP EEVATM+AVM D+DY+ K KF ENF+NDW+KLLGKNH IQ L CDFT
Sbjct: 370 YKGKPVDLTPPQEEVATMFAVMKDTDYMLKPKFKENFWNDWRKLLGKNHVIQNLDDCDFT 429
Query: 1755 PIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRG 1934
PI W+ YMWAI+DGVKEKVGNFRVEPPGLFRG
Sbjct: 430 PIYDWYQMEKEKKKQMTTEEKKAVKEEKLKQEEKYMWAILDGVKEKVGNFRVEPPGLFRG 489
Query: 1935 RGEHPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAFWNDPINP 2114
RGEHPKMGKLK+RI PSDITINIGK APIPEC IPG +WK+++HDNTVTWLAFWNDPIN
Sbjct: 490 RGEHPKMGKLKRRICPSDITINIGKGAPIPECPIPGERWKEVRHDNTVTWLAFWNDPINQ 549
Query: 2115 KEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQIAVATYL 2294
KEFKYVFLAASS+LKGQSDKEKYEK+RMLKDYI+ IR AYTKDF SKD T+RQIAVATYL
Sbjct: 550 KEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRNAYTKDFTSKDPTRRQIAVATYL 609
Query: 2295 IDRLALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQFEAEPLV 2474
ID+LALRAGNEKDDDEADTVGCCTLKVENVK +PPN+LEF+FLGKDSIRY E E V
Sbjct: 610 IDKLALRAGNEKDDDEADTVGCCTLKVENVKAVPPNLLEFNFLGKDSIRYENTVEVELPV 669
Query: 2475 YKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNMLVKAAK 2654
+KA+ QF+ GK G+DDLFD LDTSKLNAHLK+LMPGLTAKVFRTYNASITLD+ML + K
Sbjct: 670 FKAITQFQSGKSGTDDLFDKLDTSKLNAHLKDLMPGLTAKVFRTYNASITLDDMLNRGTK 729
Query: 2655 DGDAAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSELETDMVRA 2834
+G+ + K+ Y ANKEVAIICNHQR+VSKSH AQM RL EKI+EL+D L EL+ D+ RA
Sbjct: 730 NGEVSEKIVTYQHANKEVAIICNHQRTVSKSHGAQMTRLNEKISELRDILKELKIDLDRA 789
Query: 2835 KKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALGTSRINYL 3014
KKGKPPLK DGK+KRNLTPEA+EKK+ QT AKIEK+ERDMKTKED+K +ALGTS+INYL
Sbjct: 790 KKGKPPLKGSDGKQKRNLTPEALEKKISQTNAKIEKIERDMKTKEDLKTVALGTSKINYL 849
Query: 3015 DPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
DPRITVAWCKR+EVPIEKIFNKSLLAKFAWAMD DP FRF
Sbjct: 850 DPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPDFRF 889
>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
topoisomerase 1-like isoform X2 [Citrus sinensis]
gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
topoisomerase 1-like isoform X3 [Citrus sinensis]
gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
topoisomerase 1-like isoform X4 [Citrus sinensis]
Length = 902
Score = 923 bits (2386), Expect = 0.0
Identities = 522/939 (55%), Positives = 593/939 (63%), Gaps = 9/939 (0%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRDVSRQNQLDSALKGLSTRLDKPPGKHLPDTS 524
MAVEA + G + R SRQN + +K S+ + P
Sbjct: 1 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKRPSSSTANGQNSNAPKDK 60
Query: 525 NSNDRASGNSKGKVIHASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXXXPTST 704
+ S KV+ P S+ + KS +R P
Sbjct: 61 TTV------SSSKVLPVKSPPPSQKATTSSAKASPSKSPMRSPVK--------------- 99
Query: 705 ASLVSHPEKDATVKV-EMSKIDATAK-GEKPNKDATIKEEKRKRDMAVKEEKPKRDIAIX 878
S V P K E S +D K + N A +K+E+ K +K + +
Sbjct: 100 -SPVRSPVKSPVANSKESSPLDDRLKQSPQHNALAVVKKEEIKDGNGLKSDDNDSE---- 154
Query: 879 XXXXXXXXXXXXXPLSSRLSIGMKNANQ---ATKGHDTXXXXXXXXXXXXXXXXXXXXXX 1049
PLS+RL KN NQ A+K
Sbjct: 155 ----------DDKPLSARLKGNSKNVNQGIGASKADAAISEVNVKTDPEDSDDEVPLSSR 204
Query: 1050 FQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVSGHXX 1229
F + N G S +K D KPL SK QQNG R++QQ ++SV + + SG
Sbjct: 205 FPKS-NAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASS 263
Query: 1230 XXXXXXXXXXXXXXDKQVSKKSEHD-DENDHIPISQRMKNSIP-VKKSTPMKQTVTKVKS 1403
KQV+ K E D++DHIPISQRMKNS P VKKS TK S
Sbjct: 264 AKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATKSVS 323
Query: 1404 SLFNRDXXXXXXXXXXXXYSISSKAPPASGDGQK-WSTLVHSGVIFPPSYEPHGVKMLYD 1580
S N+ YS S+K P SGDGQK W+TLVH+GVIFPP Y PHGVKMLY
Sbjct: 324 SSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYK 383
Query: 1581 GRPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQALSKCDFTPI 1760
G+ V+LTPE EEVATM+AVMLD+DY+QK KF ENF+NDW+KLLGKNH IQ L CDF PI
Sbjct: 384 GKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPI 443
Query: 1761 QQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRG 1940
WH YMWAIVDGVKEKVGNFRVEPPGLFRGRG
Sbjct: 444 YDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRG 503
Query: 1941 EHPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAFWNDPINPKE 2120
EHPKMGKLKKRI PSDITINIGKD PIPEC IPG WK++KHDNTVTWLAFWNDPINPKE
Sbjct: 504 EHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKE 563
Query: 2121 FKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQIAVATYLID 2300
FKYVFLAASS+LKGQSDKEKYEK+R LKDYI IRAAYTKDF S+D T+RQIAVATYLID
Sbjct: 564 FKYVFLAASSSLKGQSDKEKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLID 623
Query: 2301 RLALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQFEAEPLVYK 2480
+LALRAGNEKDDDEADTVGCCTLKV NV+ +PPN L+FDFLGKDSI+Y E E VYK
Sbjct: 624 KLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYK 683
Query: 2481 AVEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNMLVKAAKDG 2660
A+ QF+ GKK +DDLFD LDT+KLNAHLKELMPGLTAKVFRTYNASITLD ML K DG
Sbjct: 684 AIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDG 743
Query: 2661 DAAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSELETDMVRAKK 2840
D A K+ Y ANKEVAIICNHQR+VSK+HSAQM RLTEKI +LK L +L D+ RAKK
Sbjct: 744 DVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLDRAKK 803
Query: 2841 GKPPL-KSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALGTSRINYLD 3017
GKPPL K DGKRKRNL PEA+E+K+ QT AKIEKMERDMKTKED+K +ALGTS+INYLD
Sbjct: 804 GKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLD 863
Query: 3018 PRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
PRITVAWCKR+EVPIEKIFNKSLLAKFAWAMD DP FRF
Sbjct: 864 PRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 902
>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
Length = 927
Score = 923 bits (2386), Expect = 0.0
Identities = 518/971 (53%), Positives = 614/971 (63%), Gaps = 41/971 (4%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRD-VSRQNQLDSALKGLSTRLDKPPGK---HL 512
MAVEAC M P++F+R + S+QNQ +S K LS L K G+ H
Sbjct: 1 MAVEACTPNLMEDMEDDEG---PVIFKRSNPASKQNQANSEKKKLS--LQKHVGQSAVHT 55
Query: 513 PDTSNSNDRASGNSKGKVIHASK-PSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXX 689
D +N +S KG++ ++K P P+++ K+ S K+S
Sbjct: 56 SDVRPANGESSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKAS---------------- 99
Query: 690 XPTSTASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDI 869
P ++ S P AT +TAK + +K + E PK +
Sbjct: 100 -PITSPGANSKPSASAT---------STAKQQNHHKSSAAFIE------------PKPSV 137
Query: 870 AIXXXXXXXXXXXXXXPLSSRL----SIGMKNANQATKGHDTXXXXXXXXXXXXXXXXXX 1037
PLS+R S G N G
Sbjct: 138 PAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANKEGGDSCSIRRRVIEESEDSEDEKP 197
Query: 1038 XXXXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS 1217
F + G S+SK Y D KPL +K QQNG + RD N ++ + KR + S
Sbjct: 198 LSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSVSRDGPMNKSASLSNKRPPGEVKS 257
Query: 1218 -GHXXXXXXXXXXXXXXXXDKQVSKKSE----HDDENDHIPISQRMKNS----------- 1349
+KQ + K E +D++D+IP+SQR K S
Sbjct: 258 LNQSSVKKPKLSSPITSISNKQAAVKPEPEPKAEDDDDNIPLSQRGKKSQAATSKPKDED 317
Query: 1350 ---IPV------------KKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPP 1484
+P+ K S P+K+ T V SL + Y+ SSK PP
Sbjct: 318 DDNVPIAQRIKKSPASVSKSSAPVKKASTVVSPSL-KKVNKNSKKVIKKTAYTKSSKVPP 376
Query: 1485 ASGDGQKWSTLVHSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQK 1664
SG+GQKW+TLVH+GVIFPP Y PHGVKMLY +P+ LTPE EEVATM+AVMLD+DY+ K
Sbjct: 377 GSGEGQKWTTLVHNGVIFPPPYNPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNK 436
Query: 1665 AKFNENFFNDWKKLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXX 1844
+F ENFF+DWKK+LGKNHTIQ L CDF PI +WH +
Sbjct: 437 PRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEDKLQ 496
Query: 1845 XXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIP 2024
YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI P DITINIGKDAPIP
Sbjct: 497 QEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIP 556
Query: 2025 ECHIPGAKWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLK 2204
EC IPG +WK++++DNTVTWLAFW DPIN KEFKYVFLAASSTLKGQSDKEKYEK+R+LK
Sbjct: 557 ECPIPGERWKEVRNDNTVTWLAFWIDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLK 616
Query: 2205 DYIQGIRAAYTKDFA-SKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVEN 2381
DYI GIRAAYTKDF +KD K+QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVEN
Sbjct: 617 DYIHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVEN 676
Query: 2382 VKPLPPNILEFDFLGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAH 2561
V+P+PPNIL+FDFLGKDSIRY + + EP V+KA++QFR GK+GS+DLFD LDTSKLNAH
Sbjct: 677 VEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAH 736
Query: 2562 LKELMPGLTAKVFRTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVS 2741
LKELMPGLTAKVFRTYNASITLD+ML K K G+ A KV Y ANKEVAIICNHQR+VS
Sbjct: 737 LKELMPGLTAKVFRTYNASITLDDMLSKETKGGEVAEKVVVYQHANKEVAIICNHQRTVS 796
Query: 2742 KSHSAQMERLTEKINELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQ 2921
KSHSAQM RL EKI+ELK A+ EL+TD+ R KKGKPP K DGK KRNL PEA+E+K+ Q
Sbjct: 797 KSHSAQMSRLNEKIDELKTAMEELKTDLSRVKKGKPPSKGADGKPKRNLNPEALERKMAQ 856
Query: 2922 TKAKIEKMERDMKTKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFA 3101
AKIEKMERD +TKED+K +ALGTS+INYLDPRITVAWCKR+EVPIEKIFNKSLLAKFA
Sbjct: 857 INAKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFA 916
Query: 3102 WAMDADPSFRF 3134
W+MD DPSFRF
Sbjct: 917 WSMDVDPSFRF 927
>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
gi|567920950|ref|XP_006452481.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555705|gb|ESR65719.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555707|gb|ESR65721.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
Length = 902
Score = 918 bits (2373), Expect = 0.0
Identities = 526/943 (55%), Positives = 600/943 (63%), Gaps = 13/943 (1%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRDVSRQNQLDSALKGLSTRLDKPPGKHLPDTS 524
MAVEA + G + R SRQN + +K P +S
Sbjct: 1 MAVEASSKPSRVYDFDDDEDGPAVFKRNTAASRQNLANPEVKR-------------PSSS 47
Query: 525 NSNDRASGNSKGKVIHASK---PSSSKPIANHKSPTLSGKSS-LRPPAXXXXXXXXXXXX 692
+N + S K K +S P S P + K+ T S K+S L+ P
Sbjct: 48 TANGQNSNAPKDKTTVSSSKVLPVKSPP-PSQKATTSSAKASPLKSPMR----------- 95
Query: 693 PTSTASLVSHPEKDATVKV-EMSKIDATAKG-EKPNKDATIKEEKRKRDMAVKEEKPKRD 866
+ S V P K E S +D K + N A +K+E+ K +K + +
Sbjct: 96 -SPVKSPVRSPVKSPVANSKESSPLDDRLKQLPQHNALAVVKKEEIKDGNGLKSDDNDSE 154
Query: 867 IAIXXXXXXXXXXXXXXPLSSRLSIGMKNANQ---ATKGHDTXXXXXXXXXXXXXXXXXX 1037
PLS+RL KN NQ A+K
Sbjct: 155 --------------DDKPLSARLKGNTKNVNQGIGASKADAAISEVNVKTDPEDSDDEVP 200
Query: 1038 XXXXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS 1217
F + N G S +K D KPL SK QQNG R++QQ ++SV + + S
Sbjct: 201 LSSRFPKS-NAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSS 259
Query: 1218 GHXXXXXXXXXXXXXXXXDKQVSKKSEHD-DENDHIPISQRMKNSIP-VKKSTPMKQTVT 1391
G KQV+ K E D++DHIPISQRMKNS P VKKS T
Sbjct: 260 GASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKAT 319
Query: 1392 KVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDGQK-WSTLVHSGVIFPPSYEPHGVK 1568
K SS + YS S+K P SGDGQK W+TLVH+GVIFPP Y PHGVK
Sbjct: 320 KSVSSSSKKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVK 379
Query: 1569 MLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQALSKCD 1748
MLY G+ V+LTPE EEVATM+AVMLD+DY+QK KF ENF+NDW+KLLGKNH IQ L CD
Sbjct: 380 MLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCD 439
Query: 1749 FTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLF 1928
F PI WH YMWAIVDGVKEKVGNFRVEPPGLF
Sbjct: 440 FKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLF 499
Query: 1929 RGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAFWNDPI 2108
RGRGEHPKMGKLKKRI PSDITINIGKD PIPEC IPG WK++KHDNTVTWLAFWNDPI
Sbjct: 500 RGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPI 559
Query: 2109 NPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQIAVAT 2288
NPKEFKYVFLAASS+LKGQSD+EKYEK+R LKDYI IRAAYTKDF S+D T+RQIAVAT
Sbjct: 560 NPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVAT 619
Query: 2289 YLIDRLALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQFEAEP 2468
YLID+LALRAGNEKDDDEADTVGCCTLKV NV+ +PPN L+FDFLGKDSI+Y E E
Sbjct: 620 YLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVEL 679
Query: 2469 LVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNMLVKA 2648
VYKA+ QF+ GKK +DDLFD LDT+KLNAHLKELMPGLTAKVFRTYNASITLD ML K
Sbjct: 680 PVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKG 739
Query: 2649 AKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSELETDMV 2828
DGD A K+ Y ANKEVAIICNHQR+VSK+HSAQM RLTEKI +LK L +L D+
Sbjct: 740 TGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLKGVLKDLRVDLD 799
Query: 2829 RAKKGKPPL-KSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALGTSRI 3005
RAKKGKPPL K DGKRKRNL PEA+E+K+ QT AKIEKMERDMKTKED+K +ALGTS+I
Sbjct: 800 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKI 859
Query: 3006 NYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
NYLDPRITVAWCKR+EVPIEKIFNKSLLAKFAWAMD DP FRF
Sbjct: 860 NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 902
>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
gi|222847602|gb|EEE85149.1| DNA topoisomerase family
protein [Populus trichocarpa]
Length = 877
Score = 914 bits (2363), Expect = 0.0
Identities = 505/898 (56%), Positives = 582/898 (64%), Gaps = 19/898 (2%)
Frame = +3
Query: 498 PGKHLPDTSNSND---------RASGNSKGKVIH----ASKPSSSKPIANHKSPTLSGKS 638
P K +P+ N +D + GNS K A KPSSS +N +S L
Sbjct: 6 PPKLIPNNFNDDDDDDDGPIVFKRGGNSTSKQNQLNPEAKKPSSSSQNSNGQSLNLQKGK 65
Query: 639 SLRPPAXXXXXXXXXXXXPTSTASLVSHPEKDATV--KVEMSKIDATAKGEKPNKDATIK 812
S P + S +S + P K + S D + K +K
Sbjct: 66 SPIPSSNASPMKSSTGSPKASASSAKASPLKSPLTYTRALTSSNDQLKQASKQVVSNAVK 125
Query: 813 EEKRKRDMAVKEEKPKRDIAIXXXXXXXXXXXXXXPLSSRLSIGMKNANQATKGHDTXXX 992
EE + V +E + D PLSSR+ N N+
Sbjct: 126 EETKS---IVDDEDSEDD----------------KPLSSRIKGSTNNVNKGVTA------ 160
Query: 993 XXXXXXXXXXXXXXXXXXXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNN 1172
F + N G SSSK + +P SK Q NG K D QQ +
Sbjct: 161 PAHVKDEPSDDDEVPLSSRFAMKSNAGTSSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKS 220
Query: 1173 ASVIPAKRFGTDAV-SGHXXXXXXXXXXXXXXXXDKQVSKKSEHD-DENDHIPISQRMKN 1346
SV+P KR + V S H KQV+ K E D++DH+ ISQRMK
Sbjct: 221 -SVVPTKRPMDNKVPSNHSSAKKPKLLDACTTTKVKQVTVKVEQKADDDDHLTISQRMKK 279
Query: 1347 S-IPVKKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDGQK-WSTLV 1520
+ KS+ K+ VTKV SS + YS S+K P S DGQK W+TLV
Sbjct: 280 ADSSANKSSFAKKKVTKVVSSSLKKTTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLV 339
Query: 1521 HSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWK 1700
H+GVIFPP Y+PHGVK+LY G+P+DLTPE EEVATM+AVM D+DYVQK +F +NF+NDW+
Sbjct: 340 HNGVIFPPPYKPHGVKILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWR 399
Query: 1701 KLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDG 1880
KLLGKNH IQ L CDF PI +WH + YMWAIV+G
Sbjct: 400 KLLGKNHVIQKLDDCDFNPIYEWHQQEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNG 459
Query: 1881 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDI 2060
VKEKVGNFRVEPPGLFRGRGEHPKMGKLK RI PSDITINIGKDAPIPEC IPG +WK++
Sbjct: 460 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPECPIPGERWKEV 519
Query: 2061 KHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTK 2240
KHDNTVTWLAFWNDPINPKEFKYVFLAASS+LKGQSDKEKYEK+R LKDYI IRAAYTK
Sbjct: 520 KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYTK 579
Query: 2241 DFASKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDF 2420
DFASKD+TKRQIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV+ +PPN L+FDF
Sbjct: 580 DFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFDF 639
Query: 2421 LGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVF 2600
LGKDSIRY E E VYKA+ F+ KK +DDLFD LDTSKLNAHLKELMPGLTAKVF
Sbjct: 640 LGKDSIRYENTVEVELPVYKAIGHFQVAKKQTDDLFDSLDTSKLNAHLKELMPGLTAKVF 699
Query: 2601 RTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEK 2780
RTYNASITLD L + +DGD A K+ Y +ANK+VAIICNHQR++SKSH AQM RLTEK
Sbjct: 700 RTYNASITLDEKLYEETEDGDVAEKIVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEK 759
Query: 2781 INELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMK 2960
I ELK L EL+TD+ RAKKGKPPLK DGK+KR+LTPEAIEKK+ T KIEKME MK
Sbjct: 760 IEELKSTLKELKTDLDRAKKGKPPLKGADGKQKRSLTPEAIEKKIATTNQKIEKMEMAMK 819
Query: 2961 TKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
TKED+K +ALGTS+INYLDPRITVAWCKR+EVPI+KIFNKSLLAKF WAMD DP FRF
Sbjct: 820 TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIDKIFNKSLLAKFTWAMDVDPQFRF 877
>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
Length = 920
Score = 912 bits (2358), Expect = 0.0
Identities = 513/962 (53%), Positives = 610/962 (63%), Gaps = 39/962 (4%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRD-VSRQNQLDSALKGLSTRLDKPPGK---HL 512
MAVEAC T + P++F+R + S+QNQ +S K LS L + G+ H
Sbjct: 1 MAVEACTTTNLMEDMEDDEG--PVIFKRSNPASKQNQANSEKKKLS--LQRHVGQSAVHT 56
Query: 513 PDTSNSNDRASGNSKGKVIHASK-PSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXX 689
D +N S KG++ ++K P P+++ K+ S K+S
Sbjct: 57 SDVRPANGENSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKAS---------------- 100
Query: 690 XPTSTASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDI 869
P ++A S P AT +TAK + +K + E PK +
Sbjct: 101 -PITSAGANSKPSASAT---------STAKQQNHHKSSAAFIE------------PKPSV 138
Query: 870 AIXXXXXXXXXXXXXXPLSSRL----SIGMKNANQATKGHDTXXXXXXXXXXXXXXXXXX 1037
PLS+R S G N G
Sbjct: 139 PAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKP 198
Query: 1038 XXXXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS 1217
F + G S+SK Y D KPL +K Q NG RDS N ++ + KR + S
Sbjct: 199 LSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVKS 258
Query: 1218 -GHXXXXXXXXXXXXXXXXDKQVSKKSE--HDDENDHIPISQRMKNS------------- 1349
+KQ + K E +D++D+IP+SQR K S
Sbjct: 259 LNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTATSKPKDEDDD 318
Query: 1350 -IPV------------KKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPAS 1490
+P+ K S P+K+ T V SL + Y+ SSK PP S
Sbjct: 319 NVPISQRIKKSPASVSKSSAPVKKASTVVSPSL-KKVNKKSKKVIKKTAYTKSSKVPPGS 377
Query: 1491 GDGQKWSTLVHSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAK 1670
G+GQKW+TLVH+GVIFPP Y+PHGVKMLY +P+ LTPE EEVATM+AVMLD+DY+ K +
Sbjct: 378 GEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPR 437
Query: 1671 FNENFFNDWKKLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXX 1850
F ENFF+DWKK+LGKNHTIQ L CDF PI +WH +
Sbjct: 438 FKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQE 497
Query: 1851 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPEC 2030
YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI P DITINIGKDAPIPEC
Sbjct: 498 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPEC 557
Query: 2031 HIPGAKWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDY 2210
IPG +WK++++DNTVTWLA+WNDPIN KEFKYVFLAASSTLKGQSDKEKYEK+R+LKDY
Sbjct: 558 PIPGERWKEVRNDNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDY 617
Query: 2211 IQGIRAAYTKDFA-SKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVK 2387
I GIRAAYTKDF +KD K+QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV+
Sbjct: 618 IHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
Query: 2388 PLPPNILEFDFLGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLK 2567
P+PPNIL+FDFLGKDSIRY + + EP V+KA++QFR GK+GS+DLFD LDTSKLNAHLK
Sbjct: 678 PVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLK 737
Query: 2568 ELMPGLTAKVFRTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKS 2747
ELMPGLTAKVFRTYNASITLD+ML K G+ A KV Y ANKEVAIICNHQR+VSKS
Sbjct: 738 ELMPGLTAKVFRTYNASITLDDMLSKKTNGGEVAEKVVVYQHANKEVAIICNHQRTVSKS 797
Query: 2748 HSAQMERLTEKINELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTK 2927
HSAQM RL EKI+ELK AL EL+TD+ RAKKGKP K DGK KRNL PEA+E+K+ QT
Sbjct: 798 HSAQMSRLNEKIDELKTALEELKTDLSRAKKGKPLSKGADGKPKRNLNPEALERKIAQTN 857
Query: 2928 AKIEKMERDMKTKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWA 3107
AKIEKMERD +TKED+K +ALGTS+INYLDPRITVAWCKR+EVPIEKIFNKSLLAKFAWA
Sbjct: 858 AKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWA 917
Query: 3108 MD 3113
M+
Sbjct: 918 MN 919
>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
Length = 920
Score = 911 bits (2354), Expect = 0.0
Identities = 513/962 (53%), Positives = 608/962 (63%), Gaps = 39/962 (4%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRD-VSRQNQLDSALKGLSTRLDKPPGK---HL 512
MAVEAC T + P++F+R + S+QNQ +S K LS L K G+ H
Sbjct: 1 MAVEACTTTNLMEDMEDDEG--PVIFKRSNPASKQNQANSEKKKLS--LQKHVGQSAVHT 56
Query: 513 PDTSNSNDRASGNSKGKVIHASK-PSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXX 689
D +N S KG++ ++K P P+++ K+ S K+S
Sbjct: 57 SDVRPANGENSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKAS---------------- 100
Query: 690 XPTSTASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDI 869
P ++ S P AT +TAK + +K + E PK +
Sbjct: 101 -PITSPGANSKPSASAT---------STAKQQNHHKSSAAFIE------------PKPSV 138
Query: 870 AIXXXXXXXXXXXXXXPLSSRL----SIGMKNANQATKGHDTXXXXXXXXXXXXXXXXXX 1037
PLS+R S G N G
Sbjct: 139 PAAKANSNSESSDDEKPLSARTFGCSSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKP 198
Query: 1038 XXXXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS 1217
F + G S+SK Y D KPL +K Q NG RDS N ++ + KR + S
Sbjct: 199 LSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVKS 258
Query: 1218 -GHXXXXXXXXXXXXXXXXDKQVSKKSE--HDDENDHIPISQRMKNS------------- 1349
+KQ + K E +D++D+IP+SQR K S
Sbjct: 259 LNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTATSKPKDEDDD 318
Query: 1350 -IPV------------KKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPAS 1490
+P+ K S P+K+ T V SL + Y+ SSK PP S
Sbjct: 319 NVPISQRIKKSPASVSKSSAPVKKASTVVSPSL-KKVNKKSKKVIKKTAYTKSSKVPPGS 377
Query: 1491 GDGQKWSTLVHSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAK 1670
G+GQKW+TLVH+GVIFPP Y+PHGVKMLY +P+ LTPE EEVATM+AVMLD+DY+ K +
Sbjct: 378 GEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPR 437
Query: 1671 FNENFFNDWKKLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXX 1850
F ENFF+DWKK+LGKNHTIQ L CDF PI +WH +
Sbjct: 438 FKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQE 497
Query: 1851 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPEC 2030
YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI P DITINIGKDAPIPEC
Sbjct: 498 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPEC 557
Query: 2031 HIPGAKWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDY 2210
IPG +WK++++DNTVTWLA+WNDPIN KEFKYVFLAASSTLKGQSDKEKYEK+R+LKDY
Sbjct: 558 PIPGERWKEVRNDNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDY 617
Query: 2211 IQGIRAAYTKDFA-SKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVK 2387
I GIRAAYTKDF +KD K+QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV+
Sbjct: 618 IHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
Query: 2388 PLPPNILEFDFLGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLK 2567
P+PPNIL+FDFLGKDSIRY + + EP V+KA+ QFR GK+GS+DLFD LDTSKLNAHLK
Sbjct: 678 PVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIHQFRSGKEGSEDLFDRLDTSKLNAHLK 737
Query: 2568 ELMPGLTAKVFRTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKS 2747
ELMPGLTAKVFRTYNASITLD+ML K G+ A KV Y ANKEVAIICNHQR+VSKS
Sbjct: 738 ELMPGLTAKVFRTYNASITLDDMLSKKTNGGEVAEKVVVYQHANKEVAIICNHQRTVSKS 797
Query: 2748 HSAQMERLTEKINELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTK 2927
HSAQM RL EKI+ELK AL EL+TD+ RAKKGKP K DGK KRNL PEA+E+K+ QT
Sbjct: 798 HSAQMSRLNEKIDELKTALEELKTDLSRAKKGKPLSKGADGKPKRNLNPEALERKIAQTN 857
Query: 2928 AKIEKMERDMKTKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWA 3107
AKIEKMERD +TKED+K +ALGTS+INYLDPRITVAWCKR+EVPIEKIFNKSLLAKFAWA
Sbjct: 858 AKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWA 917
Query: 3108 MD 3113
M+
Sbjct: 918 MN 919
>dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
Length = 926
Score = 911 bits (2354), Expect = 0.0
Identities = 511/966 (52%), Positives = 607/966 (62%), Gaps = 36/966 (3%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRD-VSRQNQLDSALKGLSTRLDKPPGK---HL 512
MAVEAC T + P++F+R + S+QNQ +S K LS L K G+ H
Sbjct: 1 MAVEACTTTNLMEDMEDDEG--PVIFKRSNPASKQNQANSEKKKLS--LQKHVGQSAVHT 56
Query: 513 PDTSNSNDRASGNSKGKVI-HASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXX 689
D +N +S KG++ A P P+++ K+ S K+S P
Sbjct: 57 SDVRPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKAS---PITSPGANSKLSA 113
Query: 690 XPTSTASLVSHPEKDAT-VKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRD 866
TSTA +H + A ++ + S A A + D +EKP
Sbjct: 114 SATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSD---------------DEKP--- 155
Query: 867 IAIXXXXXXXXXXXXXXPLSSRLSIGMKNANQATKGHDTXXXXXXXXXXXXXXXXXXXXX 1046
S S G N G
Sbjct: 156 --------------LIARTSGCSSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSR 201
Query: 1047 XFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS-GH 1223
F + G S+SK Y D KPL +K QQNG RD N ++ + KR + S
Sbjct: 202 RFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQ 261
Query: 1224 XXXXXXXXXXXXXXXXDKQVSKKSE--HDDENDHIPISQRMKNS--------------IP 1355
+KQ + K E +D++D+IP+SQR K S P
Sbjct: 262 SSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAP 321
Query: 1356 V------------KKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDG 1499
+ K S P+K+ T V SL + Y+ SSK PP SG+G
Sbjct: 322 ISQRIKKSPASVSKSSAPVKKASTVVSPSL-KKVNKKSKKVIKKTAYTKSSKVPPGSGEG 380
Query: 1500 QKWSTLVHSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNE 1679
QKW+TLVH+GV+FPP Y+PHGVKMLY +P+ LTPE EEVATM+A MLD+DY+ K +F E
Sbjct: 381 QKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAAMLDTDYMNKPRFKE 440
Query: 1680 NFFNDWKKLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXY 1859
NFF+DWKK+LGKNHTIQ L CDF PI +WH + Y
Sbjct: 441 NFFSDWKKILGKNHTIQNLEDCDFGPIYEWHQQEREKKKQMTTEEKKALKDERLQLEEKY 500
Query: 1860 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECHIP 2039
MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK+GKLKKRIHP DITINIGKDAPIPEC IP
Sbjct: 501 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIHPRDITINIGKDAPIPECPIP 560
Query: 2040 GAKWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQG 2219
G +WK++++DNTVTWLA+WNDP+N KE KYVFLA SSTLKGQSDKEKYEK+R+LKDYI G
Sbjct: 561 GERWKEVRNDNTVTWLAYWNDPVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHG 620
Query: 2220 IRAAYTKDFA-SKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVKPLP 2396
IRAAYTKDF +KD K+QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV+P+P
Sbjct: 621 IRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVP 680
Query: 2397 PNILEFDFLGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELM 2576
PNIL+ DF+GKDSIRY + + EP V+KA++QFR GK+GS+DLFD LDTSKLNAHLKELM
Sbjct: 681 PNILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELM 740
Query: 2577 PGLTAKVFRTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSHSA 2756
PGLTAKVFRTYNASITLD+ML K K G A KV Y ANKEVAIICNHQR+VSKSHSA
Sbjct: 741 PGLTAKVFRTYNASITLDDMLSKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSA 800
Query: 2757 QMERLTEKINELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKAKI 2936
QM RL EKI+ELK AL EL+TD+ RAKKGKPP K DG+ KRNL PEA+E+K+ QT AKI
Sbjct: 801 QMSRLNEKIDELKTALEELKTDLSRAKKGKPPSKGDDGEPKRNLNPEALERKIAQTNAKI 860
Query: 2937 EKMERDMKTKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDA 3116
EKMERD KTKED+K +AL TS+I+YLDPRITVAWCKR EVPIEK+FNKSLLAKFAWAMD
Sbjct: 861 EKMERDKKTKEDLKAVALSTSKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWAMDV 920
Query: 3117 DPSFRF 3134
DPSFRF
Sbjct: 921 DPSFRF 926
>dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]
Length = 926
Score = 908 bits (2347), Expect = 0.0
Identities = 512/968 (52%), Positives = 614/968 (63%), Gaps = 38/968 (3%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRD-VSRQNQLDSALKGLSTRLDKPPGK---HL 512
MAVEAC T + P++F+R + S+QNQ +S K LS L K G+ H
Sbjct: 1 MAVEACTTPNLMEDMEDDEG--PVIFKRSNPASKQNQANSEKKKLS--LQKHVGQSAVHT 56
Query: 513 PDTSNSNDRASGNSKGKVIHASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXXX 692
D +N +S KG++ +PS+ P KSP S K+S
Sbjct: 57 SDVRPANGESSSAQKGRI----QPSAETPPV--KSPLSSPKAS----------------N 94
Query: 693 PTSTASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDIA 872
++ AS ++ P + SK+ A+A +T K++ + A E PK +
Sbjct: 95 SSAKASPITSPGAN-------SKLSASAT-------STAKQQNHHKSSAAFIE-PKPSVP 139
Query: 873 IXXXXXXXXXXXXXXPLSSRLS----IGMKNANQATKGHDTXXXXXXXXXXXXXXXXXXX 1040
PL +R S G N G
Sbjct: 140 AAKANSNSESSDDEKPLIARTSGCSSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPL 199
Query: 1041 XXXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS- 1217
F + G S+SK + D KPL +K QQNG RD N ++ + KR + S
Sbjct: 200 SRRFPSKSSLGESTSKSHDSDEKKPLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSL 259
Query: 1218 GHXXXXXXXXXXXXXXXXDKQVSKKSE--HDDENDHIPISQRMKNS-------------- 1349
+KQ + K E +D++D+IP+SQR K S
Sbjct: 260 NQSSLKKPKLSSTITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDN 319
Query: 1350 IPV------------KKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASG 1493
P+ K S P+K+ T V SL + Y+ SSK PP SG
Sbjct: 320 APISQRIKKSPASVSKSSAPVKKASTVVSPSL-KKVNKKSKKVIKKTAYTKSSKVPPGSG 378
Query: 1494 DGQKWSTLVHSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKF 1673
+GQKW+TLVH+GV+FPP Y+PHGVKMLY +P+ LTPE EEVATM+A MLD+DY+ K +F
Sbjct: 379 EGQKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAAMLDTDYMNKPRF 438
Query: 1674 NENFFNDWKKLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXX 1853
ENFF+DWKK+LGKNHTIQ L CDF PI +WH +
Sbjct: 439 KENFFSDWKKILGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEERLQLEE 498
Query: 1854 XYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECH 2033
YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK+GKLKKRI P DITINIGKDAPIPEC
Sbjct: 499 KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIRPRDITINIGKDAPIPECP 558
Query: 2034 IPGAKWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYI 2213
IPG +WK++++DNTVTWLA+WNDP+N KE KYVFLAASSTLKGQSDKEKYEK+R+LKDYI
Sbjct: 559 IPGERWKEVRNDNTVTWLAYWNDPVNLKECKYVFLAASSTLKGQSDKEKYEKARLLKDYI 618
Query: 2214 QGIRAAYTKDFA-SKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVKP 2390
GIRAAYTKDF +KD K+Q+AVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV+P
Sbjct: 619 HGIRAAYTKDFTNNKDPMKKQVAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEP 678
Query: 2391 LPPNILEFDFLGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKE 2570
+PPNIL+ DF+GKDSIRY + + EP V+KA++QFR GK+GS+DLFD LDTSKLNAHLKE
Sbjct: 679 VPPNILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKE 738
Query: 2571 LMPGLTAKVFRTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSH 2750
LMPGLTAKVFRTYNASITLD+ML K K G A KV Y ANKEVAIICNHQR+VSKSH
Sbjct: 739 LMPGLTAKVFRTYNASITLDDMLSKETKGGKVAEKVGVYQRANKEVAIICNHQRTVSKSH 798
Query: 2751 SAQMERLTEKINELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKA 2930
SAQM RL EKI+ELK AL EL+TD+ RAKKGKPP K DG+ KRNL PEA+E+K+ QT A
Sbjct: 799 SAQMSRLNEKIDELKTALEELKTDLSRAKKGKPPSKGDDGEPKRNLNPEALERKIAQTNA 858
Query: 2931 KIEKMERDMKTKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAM 3110
KIEKMERD KTKED+K +AL TS+I+YLDPRITVAWCKR EVPIEK+FNKSLLAKFAWAM
Sbjct: 859 KIEKMERDKKTKEDLKAVALSTSKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWAM 918
Query: 3111 DADPSFRF 3134
D DPSFRF
Sbjct: 919 DVDPSFRF 926
>dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
Length = 926
Score = 907 bits (2344), Expect = 0.0
Identities = 514/968 (53%), Positives = 613/968 (63%), Gaps = 38/968 (3%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRD-VSRQNQLDSALKGLSTRLDKPPGK---HL 512
MAVEAC T + P++F+R + S+QNQ +S K LS L K G+ H
Sbjct: 1 MAVEACTTPNLMEDMEDDEG--PVIFKRSNPASKQNQANSEKKKLS--LQKHVGQSAVHT 56
Query: 513 PDTSNSNDRASGNSKGKVIHASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXXX 692
D +N +S KG++ +PS+ P KSP S K+S
Sbjct: 57 SDVRPANGESSSAQKGRI----QPSAETPPV--KSPLSSPKAS----------------N 94
Query: 693 PTSTASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDIA 872
++ AS ++ P + SK+ A+A +T K++ + A E PK +
Sbjct: 95 SSAKASPITSPGAN-------SKLSASAT-------STAKQQNHHKSSAAFIE-PKPSVP 139
Query: 873 IXXXXXXXXXXXXXXPLSSRLS----IGMKNANQATKGHDTXXXXXXXXXXXXXXXXXXX 1040
PL +R S G N G
Sbjct: 140 AAKANSNSESSDDEKPLIARTSGCSSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPL 199
Query: 1041 XXXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS- 1217
F + G S+SK Y D KPL +K QQNG RD N ++ + KR + S
Sbjct: 200 SRRFPSKSSLGESTSKSYDSDEKKPLATKVQQNGSASRDGPMNKSASLLNKRAPGEVKSL 259
Query: 1218 GHXXXXXXXXXXXXXXXXDKQVSKKSE--HDDENDHIPISQRMKNS-------------- 1349
+KQ + K E +D++D+IP+SQR K S
Sbjct: 260 NQSSLKKAKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDN 319
Query: 1350 IPV------------KKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASG 1493
P+ K S P+K+ T V SL + Y+ SSK PP SG
Sbjct: 320 APISQRIKKSPASVSKSSAPVKKASTVVSPSL-KKVNKKSKKVIKKTAYTKSSKVPPGSG 378
Query: 1494 DGQKWSTLVHSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKF 1673
+GQKW+TLVH+GV+F P Y+PHGVKMLY +P+ LTPE EEVATM+AVMLD+DY+ K +F
Sbjct: 379 EGQKWTTLVHNGVMFLPPYKPHGVKMLYKXQPLTLTPEQEEVATMFAVMLDTDYMTKPRF 438
Query: 1674 NENFFNDWKKLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXX 1853
ENFF+DWKK+LGKNHT+Q L CDF PI +WH +
Sbjct: 439 KENFFSDWKKMLGKNHTVQNLEDCDFGPIYEWHQQEKEKRKQMTTEEKKALKEERLQQEE 498
Query: 1854 XYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECH 2033
YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI P DITINIGKDAPIPEC
Sbjct: 499 KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECP 558
Query: 2034 IPGAKWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYI 2213
IPG +WK++++DNTVTWLAFWNDPIN KE KYVFLAASSTLKGQSDKEKYEK+R+LKDYI
Sbjct: 559 IPGERWKEVRNDNTVTWLAFWNDPINQKECKYVFLAASSTLKGQSDKEKYEKARLLKDYI 618
Query: 2214 QGIRAAYTKDFA-SKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVKP 2390
GIRAAYTKDF +KD K+QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV+P
Sbjct: 619 HGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEP 678
Query: 2391 LPPNILEFDFLGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKE 2570
+PPNIL+ DF+GKDSIRY + + EP V+KA++QFR GK+G DLFD LDTSKLNAHLKE
Sbjct: 679 VPPNILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGCADLFDRLDTSKLNAHLKE 738
Query: 2571 LMPGLTAKVFRTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSH 2750
LMPGLTAKVFRTYNASITLD+ML K K G A KV Y ANKEVAIICNHQR+VSKSH
Sbjct: 739 LMPGLTAKVFRTYNASITLDDMLSKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSH 798
Query: 2751 SAQMERLTEKINELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKA 2930
SAQM RL EKI+ELK AL EL+TD+ RAKKGKPP K DG+ KRNL PE++E+K+ QT A
Sbjct: 799 SAQMSRLNEKIDELKTALEELKTDLSRAKKGKPPAKGADGEPKRNLNPESLERKIAQTNA 858
Query: 2931 KIEKMERDMKTKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAM 3110
KIEKMERD KTKED+K +AL TS+I+YLDPRITVAWCKR+EVPIEKIFNKSLLAKFAW+M
Sbjct: 859 KIEKMERDKKTKEDLKAVALSTSKISYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSM 918
Query: 3111 DADPSFRF 3134
D DPSFRF
Sbjct: 919 DVDPSFRF 926
>dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
Length = 926
Score = 907 bits (2343), Expect = 0.0
Identities = 515/969 (53%), Positives = 617/969 (63%), Gaps = 39/969 (4%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRD-VSRQNQLDSALKGLSTRLDKPPGK---HL 512
MAVEAC T + P++F+R + S+QNQ ++ K LS L K G+ H
Sbjct: 1 MAVEACTTTNLMEDMEDDEG--PVIFKRSNPTSKQNQANAEKKKLS--LQKHVGQSAVHT 56
Query: 513 PDTSNSNDRASGNSKGKVIHASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXXX 692
D +N +S KG++ +PS+ P KSP S K+S
Sbjct: 57 SDVRPANGESSSAQKGRI----QPSAETPPV--KSPLSSPKAS----------------N 94
Query: 693 PTSTASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDIA 872
++ AS ++ P + SK+ A+A +T K++ + A E PK +
Sbjct: 95 SSAKASPITSPGAN-------SKLSASAT-------STAKQQNHHKSSAAFIE-PKPSVP 139
Query: 873 IXXXXXXXXXXXXXXPLSSRLS--IGMKNANQATK--GHDTXXXXXXXXXXXXXXXXXXX 1040
PL +R S M +N A K G
Sbjct: 140 AAKANSNSESSDDEKPLIARTSGCSSMGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPL 199
Query: 1041 XXXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS- 1217
F + G S+SK Y D KPL +K QQNG + N ++ + KR + S
Sbjct: 200 SRRFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASPEGPMNKSASLSNKRAPGEVKSL 259
Query: 1218 GHXXXXXXXXXXXXXXXXDKQVS----KKSEHDDEN----------------------DH 1319
+KQ + K+E DD+N DH
Sbjct: 260 NQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDH 319
Query: 1320 IPISQRMKNSIPV---KKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPAS 1490
PISQR+K S PV K S P+K+ T V +SL + Y+ SSK PP S
Sbjct: 320 APISQRIKKS-PVSVSKSSAPVKKASTVVSTSL-KKVNKKSKKVIRKTAYTKSSKVPPGS 377
Query: 1491 GDGQKWSTLVHSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAK 1670
G+GQKW+TLVH+GV+FPP Y+PHGVKMLY +P+ LTPE EEVATM+AVMLD+DY+ K +
Sbjct: 378 GEGQKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAVMLDTDYMNKPR 437
Query: 1671 FNENFFNDWKKLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXX 1850
F ENFF+DWKK+LGKNHTIQ L CDF PI +WH +
Sbjct: 438 FKENFFSDWKKILGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEERLQQE 497
Query: 1851 XXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPEC 2030
YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK+GKLKKRI P DITINIGKDAPIPEC
Sbjct: 498 EKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIRPRDITINIGKDAPIPEC 557
Query: 2031 HIPGAKWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDY 2210
IPG +WK++++DNTVTWLA+WNDP+N KE KYVFLAASSTLKGQS KEKYEK+R+LKDY
Sbjct: 558 PIPGERWKEVRNDNTVTWLAYWNDPVNIKECKYVFLAASSTLKGQSVKEKYEKARVLKDY 617
Query: 2211 IQGIRAAYTKDFA-SKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVK 2387
I GIRAAYTK F +KD K+QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV+
Sbjct: 618 IHGIRAAYTKGFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
Query: 2388 PLPPNILEFDFLGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLK 2567
P+PPNIL+ DF+GKDSIRY + + EP V+KA++QFR GK+GS+DLFD LDTSKLNAHLK
Sbjct: 678 PVPPNILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLK 737
Query: 2568 ELMPGLTAKVFRTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKS 2747
ELMPGLTAKVFRTYNASITLD+ML K K G A KV Y ANKEVAIICNHQR+VSKS
Sbjct: 738 ELMPGLTAKVFRTYNASITLDDMLSKETKGGKIAEKVAVYQHANKEVAIICNHQRTVSKS 797
Query: 2748 HSAQMERLTEKINELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTK 2927
HSAQM RL EKI+ELK AL EL+TD+ RAKKGKPP K DG+ KRNL PE++E+K+ QT
Sbjct: 798 HSAQMSRLNEKIDELKTALEELKTDLSRAKKGKPPSKDADGEPKRNLNPESLERKIAQTN 857
Query: 2928 AKIEKMERDMKTKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWA 3107
AKIEKMERD KTKED+K +AL TS+I+YLDPRITVAWCKR EVPIEK+FNKSLLAKFAWA
Sbjct: 858 AKIEKMERDKKTKEDLKAVALSTSKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWA 917
Query: 3108 MDADPSFRF 3134
MD DPSFRF
Sbjct: 918 MDVDPSFRF 926
>ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinifera]
gi|296082698|emb|CBI21703.3| unnamed protein product
[Vitis vinifera]
Length = 857
Score = 901 bits (2329), Expect = 0.0
Identities = 468/697 (67%), Positives = 523/697 (75%), Gaps = 11/697 (1%)
Frame = +3
Query: 1077 SSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKR--FGTDAVSGHXXXXXXXXX 1250
SS K D KPL K QNG D + + +V+ KR G ++ G
Sbjct: 164 SSKFQLKSDEKKPLPLKVNQNG--GTDKRDKSPTVLNKKRPLDGVNSSLGQSSLVKKPKI 221
Query: 1251 XXXXXXXDK--QVSKKSE---HDDENDHIPISQRMKNS--IPVKKSTPMKQTVTKVKSSL 1409
K + K+E DD++D +PISQRMK S K P KQ VTKV SS
Sbjct: 222 SGQSAQPFKVTHATAKAEPKVEDDDDDDMPISQRMKKSGASSGNKPVPAKQKVTKVVSST 281
Query: 1410 FNRDXXXXXXXXXXXX--YSISSKAPPASGDGQKWSTLVHSGVIFPPSYEPHGVKMLYDG 1583
+ YS S+K PP+SG+GQKW+TLVH+GVIFPP Y+PHGVKMLY G
Sbjct: 282 SFKKTKDIKSKKMEKNSKYSKSTKVPPSSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKG 341
Query: 1584 RPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQALSKCDFTPIQ 1763
+PVDLTPE EEVATM+AVMLD+DY+QK KF ENF DW+K+LGKNH IQ L CDFTPI
Sbjct: 342 KPVDLTPEQEEVATMFAVMLDTDYMQKEKFKENFMADWRKILGKNHVIQRLDDCDFTPIY 401
Query: 1764 QWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 1943
+WH YMWAIVDGVKEKVGNFRVEPPGLFRGRGE
Sbjct: 402 EWHQEEKEKKKQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 461
Query: 1944 HPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAFWNDPINPKEF 2123
HPKMGKLK+RIHPSDITINIGK++ IPEC IPG WK++KHDNTVTWLAFWNDPINPKEF
Sbjct: 462 HPKMGKLKRRIHPSDITINIGKNSQIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEF 521
Query: 2124 KYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQIAVATYLIDR 2303
KYVFLAASS+LKGQSDKEKYEK+R LK+YI+ IRA YTKDF SKD+TKRQIAVATYLID+
Sbjct: 522 KYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKDITKRQIAVATYLIDK 581
Query: 2304 LALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQFEAEPLVYKA 2483
LALRAGNEKDDDEADTVGCCTLKVENV P PPN L+FDFLGKDSIRY K E E VYKA
Sbjct: 582 LALRAGNEKDDDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSIRYEKTVEVELPVYKA 641
Query: 2484 VEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNMLVKAAKDGD 2663
+EQFR GK GSDDLFD LDTSKLNAHLKELMPGLTAKVFRTYNASITLD ML K K+GD
Sbjct: 642 IEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKDTKEGD 701
Query: 2664 AAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSELETDMVRAKKG 2843
A KV Y ANKEVAIICNHQR++SKSH+AQM RLTEKI+E+K L+ L+TD+ RAKKG
Sbjct: 702 VAQKVVVYQHANKEVAIICNHQRTISKSHTAQMTRLTEKIDEMKGVLNGLKTDLARAKKG 761
Query: 2844 KPPLKSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALGTSRINYLDPR 3023
KPPLK DGKR RNLTPEA+E+K+ QT AKIEKMERD TKED+K +ALGTS+INYLDPR
Sbjct: 762 KPPLKDADGKR-RNLTPEALERKIAQTNAKIEKMERDKDTKEDLKTVALGTSKINYLDPR 820
Query: 3024 ITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
I+VAWCKR EVPIEK+FNKSLLAKFAWAMD P FRF
Sbjct: 821 ISVAWCKRQEVPIEKVFNKSLLAKFAWAMDVPPDFRF 857
>dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
Length = 920
Score = 897 bits (2319), Expect = 0.0
Identities = 505/959 (52%), Positives = 602/959 (62%), Gaps = 36/959 (3%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRD-VSRQNQLDSALKGLSTRLDKPPGK---HL 512
MAVEAC T + P++F+R + S+QNQ +S K LS L K G+ H
Sbjct: 1 MAVEACTTTNLMEDMEDDEG--PVIFKRSNPASKQNQANSEKKKLS--LQKHVGQSAVHT 56
Query: 513 PDTSNSNDRASGNSKGKVI-HASKPSSSKPIANHKSPTLSGKSSLRPPAXXXXXXXXXXX 689
D +N +S KG++ A P P+++ K+ S K+S P
Sbjct: 57 SDVRPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKAS---PITSPGANSKLSA 113
Query: 690 XPTSTASLVSHPEKDAT-VKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRD 866
TSTA +H + A ++ + S A A + D +EKP
Sbjct: 114 SATSTAKQQNHHKSSAAFIEPKPSVPPAKANSNSESSD---------------DEKP--- 155
Query: 867 IAIXXXXXXXXXXXXXXPLSSRLSIGMKNANQATKGHDTXXXXXXXXXXXXXXXXXXXXX 1046
S S G N G
Sbjct: 156 --------------LIARTSGCSSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSR 201
Query: 1047 XFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVS-GH 1223
F + G S+SK Y D KPL +K QQNG RD N ++ + KR + S
Sbjct: 202 RFPSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQ 261
Query: 1224 XXXXXXXXXXXXXXXXDKQVSKKSE--HDDENDHIPISQRMKNS--------------IP 1355
+KQ + K E +D++D+IP+SQR K S P
Sbjct: 262 SSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAP 321
Query: 1356 V------------KKSTPMKQTVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDG 1499
+ K S P+K+ T V SL + Y+ SSK PP SG+G
Sbjct: 322 ISQRIKKSPASVSKSSAPVKKASTVVSPSL-KKVNKKSKKVIKKTAYTKSSKVPPGSGEG 380
Query: 1500 QKWSTLVHSGVIFPPSYEPHGVKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNE 1679
QKW+TLVH+GVIFPP Y+PHGVKMLY +P+ LTPE EEVATM+AVMLD+DY+ K +F E
Sbjct: 381 QKWTTLVHNGVIFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAVMLDTDYMNKPRFKE 440
Query: 1680 NFFNDWKKLLGKNHTIQALSKCDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXY 1859
NFF+DWKK+LGKNHTIQ L CDF PI +WH + Y
Sbjct: 441 NFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEREKKKQMTTEEKKALKDERLQQEEKY 500
Query: 1860 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECHIP 2039
MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK+GKLKKRIHP DITINIGKDAPIPEC IP
Sbjct: 501 MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKVGKLKKRIHPRDITINIGKDAPIPECPIP 560
Query: 2040 GAKWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQG 2219
G +WK++++DNTVTWLA+WNDP+N KE KYVFLA SSTLKGQSDKEKYEK+R+LKDYI G
Sbjct: 561 GERWKEVRNDNTVTWLAYWNDPVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHG 620
Query: 2220 IRAAYTKDFA-SKDMTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVKPLP 2396
IRAAYTKDF +KD K+QIAVATYLID+LALRAGNEKDDDEADTVGCCTL+VENV+P+P
Sbjct: 621 IRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLRVENVEPVP 680
Query: 2397 PNILEFDFLGKDSIRYYKQFEAEPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELM 2576
PNIL+ DF+GKDSIRY + + EP V+KA++QFR GK+GS+DLFD LDTSKLNAHLKELM
Sbjct: 681 PNILKIDFIGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELM 740
Query: 2577 PGLTAKVFRTYNASITLDNMLVKAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSHSA 2756
PGLTAKVFRTYNASITLD+ML K K G A KV Y ANKEVAIICNHQR+VSKSHSA
Sbjct: 741 PGLTAKVFRTYNASITLDDMLSKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSA 800
Query: 2757 QMERLTEKINELKDALSELETDMVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKAKI 2936
QM RL EKI+ELK AL EL+TD+ RAKKGKPP K DG+ KRNL PEA+E+K+ QT AKI
Sbjct: 801 QMSRLNEKIDELKTALEELKTDLSRAKKGKPPSKGDDGEPKRNLNPEALERKIAQTNAKI 860
Query: 2937 EKMERDMKTKEDMKEIALGTSRINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMD 3113
EKMERD KTKED+K +AL TS+I+YLDPRITVAWCKR EVPIEK+FNKSLLAKFAWAM+
Sbjct: 861 EKMERDKKTKEDLKAVALSTSKISYLDPRITVAWCKRQEVPIEKMFNKSLLAKFAWAMN 919
>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
Length = 883
Score = 896 bits (2315), Expect = 0.0
Identities = 452/704 (64%), Positives = 514/704 (73%), Gaps = 9/704 (1%)
Frame = +3
Query: 1050 FQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKR-FGTDAVSGHX 1226
F+L GAS KL D KPLTS + NG K+D ++ + KR G S H
Sbjct: 180 FRLKTGMGASLDKLDNFDEKKPLTSTLKPNGISKKDDERVKSPKGQNKRPLGQANTSHHS 239
Query: 1227 XXXXXXXXXXXXXXXDKQVSKKSE--------HDDENDHIPISQRMKNSIPVKKSTPMKQ 1382
KQVS K+E +DD++++ P +R+K S+ K
Sbjct: 240 SSKKPKLLDGSVKGKVKQVSVKAEQKDDDDDDNDDDDEYTPTVKRLKKSVSSDNKKASKT 299
Query: 1383 TVTKVKSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDGQKWSTLVHSGVIFPPSYEPHG 1562
V + YS S+K PP SG+GQKW+TL H+GVIFPP Y+PHG
Sbjct: 300 KVIPSSRKKATKKAKKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYKPHG 359
Query: 1563 VKMLYDGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQALSK 1742
VKMLY+GRPVDLTPE EEVATM+AVM D+DY K +F ENF NDW+ LGKNH I+
Sbjct: 360 VKMLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKKFEL 419
Query: 1743 CDFTPIQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPG 1922
CDFTPI +WH + YMWA+VDGVKEKVGNFRVEPPG
Sbjct: 420 CDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPG 479
Query: 1923 LFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAFWND 2102
LFRGRGEHPKMGKLKKRI PSDITINIGK+AP+PEC IPG +WK+++HDNTVTWLAFWND
Sbjct: 480 LFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAFWND 539
Query: 2103 PINPKEFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQIAV 2282
PINPKEFKYVFLAASS+LKGQSDKEKYEK+R+LKDYIQ IRA YTKDF +KD KRQIAV
Sbjct: 540 PINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAV 599
Query: 2283 ATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQFEA 2462
ATYLID+LALRAGNEKDDDEADTVGCCTLKVENV +PPN LEFDFLGKDSIRY+ E
Sbjct: 600 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSIRYFNTVEV 659
Query: 2463 EPLVYKAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNMLV 2642
E VYKA+ QF+ GK G DDLFD LDTSKLNAHLKELMPGLTAKVFRTYNASITLD ML
Sbjct: 660 ELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLN 719
Query: 2643 KAAKDGDAAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSELETD 2822
+ A+ GDA K+ Y ANKEVAIICNHQRSVSKSH QM RL+EK+ EL+ L EL+TD
Sbjct: 720 REARGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMRELQGVLDELKTD 779
Query: 2823 MVRAKKGKPPLKSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALGTSR 3002
+ RAKKGKPPLK DGK K+N+TPE +E+K+ QT KIEKMERDMKTKED+K +ALGTS+
Sbjct: 780 LARAKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSK 839
Query: 3003 INYLDPRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
INYLDPRI+VAWCKR EVPIEKIFNKSLLAKFAWAMD DPSFRF
Sbjct: 840 INYLDPRISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 883
>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
gi|222860420|gb|EEE97967.1| DNA topoisomerase family
protein [Populus trichocarpa]
Length = 860
Score = 895 bits (2314), Expect = 0.0
Identities = 500/875 (57%), Positives = 567/875 (64%), Gaps = 9/875 (1%)
Frame = +3
Query: 537 RASGNSKGKV----IHASKPSSSKPIANHKSPTL-SGKSSLRPPAXXXXXXXXXXXXPTS 701
+ GNS K + A KPSSS +N +S GKS + +S
Sbjct: 27 KRGGNSTSKQNQPNLEAKKPSSSSQNSNGQSLNAHKGKSPIS----------------SS 70
Query: 702 TASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEE-KPKRDIAIX 878
AS V P + K A++ P K +AVKEE KP D
Sbjct: 71 NASPVKSP-------IGSPKASASSAKASPMKPPVTYSRVPSSSIAVKEETKPIVD---- 119
Query: 879 XXXXXXXXXXXXXPLSSRLSIGMKNANQATKGHDTXXXXXXXXXXXXXXXXXXXXXXFQL 1058
PLSSR NAN+ F
Sbjct: 120 -----DDDSEDDKPLSSRFKGSTNNANKGVT------VPARVKDEHSDDDEVPLSSRFAA 168
Query: 1059 NPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVSGHXXXXX 1238
N G+SS K L SK Q NG +D QQ + S +P KR + V +
Sbjct: 169 KSNAGSSSCKTISSSEKILLVSKIQLNGSTAKDKQQKS-SAVPTKRPMDNKVPSNQSFAK 227
Query: 1239 XXXXXXXXXXXDKQVSKKSE-HDDENDHIPISQRMKN-SIPVKKSTPMKQTVTKVKSSLF 1412
KQV+ K+E D++DH+ ISQRMK S KS +KQ VTKV S
Sbjct: 228 KPKLSDASTT--KQVTVKAELKADDDDHLTISQRMKKASSSSNKSLSVKQNVTKVVSFSS 285
Query: 1413 NRDXXXXXXXXXXXXYSISSKAPPASGDGQK-WSTLVHSGVIFPPSYEPHGVKMLYDGRP 1589
+ YS S+K P S DGQK W TLVH+GVIFPP Y+PHGVKMLY G+P
Sbjct: 286 KKTTKNNKKQMQNSKYSKSTKVQPGSSDGQKKWKTLVHNGVIFPPPYKPHGVKMLYKGKP 345
Query: 1590 VDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQALSKCDFTPIQQW 1769
VDLTPE EEVATM+AVM D++YVQK +F +NF+NDW+ LLGKNH IQ L CDF PI +W
Sbjct: 346 VDLTPEQEEVATMFAVMKDTEYVQKPQFLQNFWNDWRTLLGKNHVIQKLEACDFNPIYEW 405
Query: 1770 HLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 1949
H + YMWAIV+GVKEKVGNFRVEPPGLFRGRGEHP
Sbjct: 406 HQKEKEKKKQMSTEEKKAVREEKLKQEEMYMWAIVNGVKEKVGNFRVEPPGLFRGRGEHP 465
Query: 1950 KMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAFWNDPINPKEFKY 2129
KMGKLK RI PSDITINIGKDAPIP+C IPG +WK++KHDNTVTWLAFWNDPINPKEFKY
Sbjct: 466 KMGKLKSRIRPSDITINIGKDAPIPKCPIPGERWKEVKHDNTVTWLAFWNDPINPKEFKY 525
Query: 2130 VFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQIAVATYLIDRLA 2309
VFLAASS+LKGQSDKEKYEK+R LKDYI IR AYTKDFASKD+TKRQIAVATYLID+LA
Sbjct: 526 VFLAASSSLKGQSDKEKYEKARKLKDYIHNIRTAYTKDFASKDITKRQIAVATYLIDKLA 585
Query: 2310 LRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQFEAEPLVYKAVE 2489
LRAGNEKDDDEADTVGCCTLKV NV+ +PPN L+FDFLGKDSIRY E E VYKA+
Sbjct: 586 LRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFDFLGKDSIRYENTVEVELPVYKAIR 645
Query: 2490 QFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNMLVKAAKDGDAA 2669
QF+ KK +DDLFD LDTSKLNAHLKELMPGLTAKVFRTYNASITLD L + +DGD A
Sbjct: 646 QFQVAKKPTDDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEKLYEETEDGDVA 705
Query: 2670 HKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSELETDMVRAKKGKP 2849
K Y +ANK+VAIICNHQR++SKSH AQM RLTEK+ ELK L E +TD+ RAKKGKP
Sbjct: 706 EKFVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKLEELKGTLKEFKTDLDRAKKGKP 765
Query: 2850 PLKSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALGTSRINYLDPRIT 3029
PLK DGK+KRNLTPEAIEKK+ T KIEKME MKTKED+K +ALGTS+INYLDPRIT
Sbjct: 766 PLKDADGKQKRNLTPEAIEKKIATTNQKIEKMELSMKTKEDLKTVALGTSKINYLDPRIT 825
Query: 3030 VAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
VAWCKR+EVPIEKIFNKSLLAKF WAMD DP FRF
Sbjct: 826 VAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPQFRF 860
>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
tuberosum]
Length = 905
Score = 894 bits (2310), Expect = 0.0
Identities = 484/939 (51%), Positives = 598/939 (63%), Gaps = 9/939 (0%)
Frame = +3
Query: 345 MAVEACATKKMFXXXXXXXXGTPIVFRRRDV-SRQNQLDSALKGLSTRLDKPPGKHLPDT 521
MAVEA A K P+VF+R S+QNQ +S+ S + D G+ +PD
Sbjct: 1 MAVEAFA-KTNLMEDIDDDDDMPLVFKRSSTTSKQNQSNSS----SQKQDGRSGRQVPDV 55
Query: 522 SNSNDRASGNSKGKVIHASKPSSS-KPIANHKSPTLSGKSSLRPP-AXXXXXXXXXXXXP 695
+ N ++S K K +SK S + P+ + K+ LS ++S P P
Sbjct: 56 RSPNGQSSSTHKVKTAASSKASPAVSPLTSPKAAPLSSRTSPAPNFRTSPAPNSRTPPAP 115
Query: 696 TSTASLVSHPEKDATVKVEMSKIDATAKGEKPNKDATIKEEKRKRDMAVKEEKPKRDIAI 875
S S + ++ + ++ + I+ + D A E K
Sbjct: 116 NSRTSPAPNSRPSSSAGNQAKNVNQQSNIAPKESKQAIEPKSEPNDEAEDSEDDK----- 170
Query: 876 XXXXXXXXXXXXXXPLSSRLSIGMKNANQA----TKGHDTXXXXXXXXXXXXXXXXXXXX 1043
PLS+R+ G+ +N G T
Sbjct: 171 --------------PLSARVPSGLSKSNSIHANNVLGTSTSVQKSRPPKKEDSDDEIPLA 216
Query: 1044 XXFQLNPNTGASSSKLYKLDVDKPLTSKPQQNGFIKRDSQQNNASVIPAKRFGTDAVSGH 1223
FQ+ + GAS+SK + KP K +QNG +A+V+ + G ++
Sbjct: 217 SRFQMKSSAGASTSKFSSSEEVKP---KIRQNGL-------PSATVLSKRPPGEVSLLLR 266
Query: 1224 XXXXXXXXXXXXXXXXDKQVSKKSEH--DDENDHIPISQRMKNSIPVKKSTPMKQTVTKV 1397
S K+E +D++D +P+SQR+K ++ ++ K + K
Sbjct: 267 LQLKSLDFLMHLHLFLVSNXSVKTEKKTEDDDDEVPLSQRIKKAVASASASASKVSSVKK 326
Query: 1398 KSSLFNRDXXXXXXXXXXXXYSISSKAPPASGDGQKWSTLVHSGVIFPPSYEPHGVKMLY 1577
+ + + YS SSK P+SGDGQKW+TL H+GVIFPP Y+PHGVKMLY
Sbjct: 327 ATKVVSSSMKKTKKKLKKPKYSKSSKLQPSSGDGQKWTTLEHNGVIFPPPYKPHGVKMLY 386
Query: 1578 DGRPVDLTPELEEVATMYAVMLDSDYVQKAKFNENFFNDWKKLLGKNHTIQALSKCDFTP 1757
G+PVDLTPE EEVATMYAVMLD++Y+ K +F ENF NDW+K+LGKNH IQ L +C+FTP
Sbjct: 387 KGKPVDLTPEQEEVATMYAVMLDTEYLTKQQFKENFMNDWRKILGKNHVIQKLEECNFTP 446
Query: 1758 IQQWHLRXXXXXXXXXXXXXXXXXXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGR 1937
I +WH YMWAIVDGVKEKVGNFRVEPPGLFRGR
Sbjct: 447 IYEWHQSEKEKKKQMSSEEKKALREEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGR 506
Query: 1938 GEHPKMGKLKKRIHPSDITINIGKDAPIPECHIPGAKWKDIKHDNTVTWLAFWNDPINPK 2117
GEHPKMGKLK+RI P+DITINIGK P+PEC IPG +WK+++HDNTVTWLAFWNDPINP+
Sbjct: 507 GEHPKMGKLKRRIRPNDITINIGKGVPVPECPIPGQRWKEVRHDNTVTWLAFWNDPINPR 566
Query: 2118 EFKYVFLAASSTLKGQSDKEKYEKSRMLKDYIQGIRAAYTKDFASKDMTKRQIAVATYLI 2297
EFKYVFLAASS+LKGQSDKEKYEK+R LKDYI+GIR+AYTKDF SKD KRQIAVATYLI
Sbjct: 567 EFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFTSKDPVKRQIAVATYLI 626
Query: 2298 DRLALRAGNEKDDDEADTVGCCTLKVENVKPLPPNILEFDFLGKDSIRYYKQFEAEPLVY 2477
D+LALRAGNEKDDDEADTVGCCTLKVENV+P+PPNIL+FDFLGKDSIRY + V+
Sbjct: 627 DKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVAVYEPVF 686
Query: 2478 KAVEQFRKGKKGSDDLFDMLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNMLVKAAKD 2657
KA++QFR GKKG DDLFD LDTSKLNAHLKELMPGLTAKVFRTYNAS TL+ L K +
Sbjct: 687 KAIQQFRSGKKGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASFTLEQQLTKLTQG 746
Query: 2658 GDAAHKVCGYLEANKEVAIICNHQRSVSKSHSAQMERLTEKINELKDALSELETDMVRAK 2837
G+ A KV Y ANKEVAIICNHQR+VSKSHS Q+ RL EKI+ELK L E + D+ RAK
Sbjct: 747 GELADKVAVYNVANKEVAIICNHQRTVSKSHSVQISRLNEKIDELKAILEEFKVDLARAK 806
Query: 2838 KGKPPLKSPDGKRKRNLTPEAIEKKVVQTKAKIEKMERDMKTKEDMKEIALGTSRINYLD 3017
KGKPP+K DGK KRNLTPEA++KK+ QT KI+ +ER ++TKE++K +ALGTS+INYLD
Sbjct: 807 KGKPPVKGADGKAKRNLTPEALQKKIDQTNVKIDNIERQIETKEELKTVALGTSKINYLD 866
Query: 3018 PRITVAWCKRNEVPIEKIFNKSLLAKFAWAMDADPSFRF 3134
PRITVAWCKR+EVPIEK+FNKSLLAKFAWAMD +PSF F
Sbjct: 867 PRITVAWCKRHEVPIEKMFNKSLLAKFAWAMDVEPSFTF 905