BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00000229
         (1593 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262798.2| PREDICTED: transcription initiation factor I...   433   e-118
emb|CBI33123.3| unnamed protein product [Vitis vinifera]              433   e-118
emb|CAN65486.1| hypothetical protein VITISV_003680 [Vitis vinifera]   430   e-117
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|...   409   e-111
ref|XP_002322538.2| transcription initiation factor IIF alpha su...   408   e-111
gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus...   405   e-110
ref|XP_002308775.1| transcription initiation factor IIF alpha su...   403   e-109
ref|XP_006467340.1| PREDICTED: transcription initiation factor I...   400   e-108
ref|XP_006449856.1| hypothetical protein CICLE_v10014841mg [Citr...   400   e-108
ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr...   400   e-108
ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Popu...   389   e-105
gb|EOY28871.1| Transcription activators,DNA binding,RNA polymera...   388   e-105
gb|EOY28870.1| Transcription activators,DNA binding,RNA polymera...   388   e-105
gb|EOY28869.1| Transcription activators,DNA binding,RNA polymera...   388   e-105
gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus...   387   e-105
ref|XP_006352367.1| PREDICTED: transcription initiation factor I...   385   e-104
ref|XP_006352364.1| PREDICTED: transcription initiation factor I...   385   e-104
ref|XP_002529600.1| tfiif-alpha, putative [Ricinus communis] gi|...   383   e-103
ref|XP_004250258.1| PREDICTED: transcription initiation factor I...   382   e-103
gb|EMJ12738.1| hypothetical protein PRUPE_ppa003970mg [Prunus pe...   379   e-102

>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Vitis vinifera]
          Length = 534

 Score =  433 bits (1113), Expect = e-118
 Identities = 247/421 (58%), Positives = 275/421 (65%), Gaps = 9/421 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q QYHGQLEG+QSATYYLLM+Q KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 118  ETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 177

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEV-XXXXXXXXXXXXXXEDEEGNASDKG 358
            RRRTADGY+RWMMKAANNGPAAFGE  K+ + E                ++EEGN SDK 
Sbjct: 178  RRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKA 237

Query: 359  XXXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAV 538
                     RK+RLGLNK                            WEHEEIFTDDDEAV
Sbjct: 238  EEDEEEEAERKNRLGLNK-RSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAV 296

Query: 539  GNDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXX 718
            GNDPEEREDLAPEVPAPPEIKQD                            +  GMN   
Sbjct: 297  GNDPEEREDLAPEVPAPPEIKQD--EEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSD 354

Query: 719  XXXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSDSSPVKPA---GKGTPSTSKSAKGKRK 889
                            SPVLAPK KD PKEEP+D+SP+K A    + TP TSKS+KGKRK
Sbjct: 355  AEDDDDDEEEDEIG-LSPVLAPKQKDVPKEEPADNSPMKSATASARSTPPTSKSSKGKRK 413

Query: 890  INGDDTKVASSA-HKKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGS-SSQGPV 1054
             NGDD K  +    KKVKTENE K S KDE   P K +A P+GTP S+ KTGS SS GPV
Sbjct: 414  SNGDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPV 473

Query: 1055 SEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNGQNHIVLRD 1234
            +EDEIRAVLLQ+APVTTQDLV++FKARL+S EDKKAFA+IL+RISKI KTNG N++VLRD
Sbjct: 474  TEDEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVLRD 533

Query: 1235 R 1237
            +
Sbjct: 534  K 534


>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  433 bits (1113), Expect = e-118
 Identities = 247/421 (58%), Positives = 275/421 (65%), Gaps = 9/421 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q QYHGQLEG+QSATYYLLM+Q KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 123  ETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 182

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEV-XXXXXXXXXXXXXXEDEEGNASDKG 358
            RRRTADGY+RWMMKAANNGPAAFGE  K+ + E                ++EEGN SDK 
Sbjct: 183  RRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKA 242

Query: 359  XXXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAV 538
                     RK+RLGLNK                            WEHEEIFTDDDEAV
Sbjct: 243  EEDEEEEAERKNRLGLNK-RSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAV 301

Query: 539  GNDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXX 718
            GNDPEEREDLAPEVPAPPEIKQD                            +  GMN   
Sbjct: 302  GNDPEEREDLAPEVPAPPEIKQD--EEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSD 359

Query: 719  XXXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSDSSPVKPA---GKGTPSTSKSAKGKRK 889
                            SPVLAPK KD PKEEP+D+SP+K A    + TP TSKS+KGKRK
Sbjct: 360  AEDDDDDEEEDEIG-LSPVLAPKQKDVPKEEPADNSPMKSATASARSTPPTSKSSKGKRK 418

Query: 890  INGDDTKVASSA-HKKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGS-SSQGPV 1054
             NGDD K  +    KKVKTENE K S KDE   P K +A P+GTP S+ KTGS SS GPV
Sbjct: 419  SNGDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPV 478

Query: 1055 SEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNGQNHIVLRD 1234
            +EDEIRAVLLQ+APVTTQDLV++FKARL+S EDKKAFA+IL+RISKI KTNG N++VLRD
Sbjct: 479  TEDEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVLRD 538

Query: 1235 R 1237
            +
Sbjct: 539  K 539


>emb|CAN65486.1| hypothetical protein VITISV_003680 [Vitis vinifera]
          Length = 435

 Score =  430 bits (1105), Expect = e-117
 Identities = 246/421 (58%), Positives = 274/421 (65%), Gaps = 9/421 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q QYHGQLEG+QSATYYLLM+Q KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 19   ETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 78

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEV-XXXXXXXXXXXXXXEDEEGNASDKG 358
            RRRTADGY+RWMMKAANNGPAAFGE  K+ + E                ++EEGN SDK 
Sbjct: 79   RRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKA 138

Query: 359  XXXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAV 538
                     RK+RLGLNK                            WEHEEIFTDDDEAV
Sbjct: 139  EEDEEEEAERKNRLGLNK-RSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAV 197

Query: 539  GNDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXX 718
            GNDPEEREDLAPEVPAPPEIKQD                            +  GMN   
Sbjct: 198  GNDPEEREDLAPEVPAPPEIKQD--EEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSD 255

Query: 719  XXXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSDSSPVKPA---GKGTPSTSKSAKGKRK 889
                            SPVLAPK KD PKEEP+D+SP+K A    + TP TSKS+KGKRK
Sbjct: 256  AEDDDDDEEEDEIG-LSPVLAPKQKDVPKEEPADNSPMKSAPASARSTPPTSKSSKGKRK 314

Query: 890  INGDDTKVASSA-HKKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGS-SSQGPV 1054
             NGDD K  +    KKVKTENE K S KDE   P K +A  +GTP S+ KTGS SS GPV
Sbjct: 315  SNGDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATAKGTPSSSVKTGSTSSAGPV 374

Query: 1055 SEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNGQNHIVLRD 1234
            +EDEIRAVLLQ+APVTTQDLV++FKARL+S EDKKAFA+IL+RISKI KTNG N++VLRD
Sbjct: 375  TEDEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVLRD 434

Query: 1235 R 1237
            +
Sbjct: 435  K 435


>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|223541454|gb|EEF43004.1|
            tfiif-alpha, putative [Ricinus communis]
          Length = 533

 Score =  409 bits (1050), Expect = e-111
 Identities = 238/420 (56%), Positives = 270/420 (64%), Gaps = 8/420 (1%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q QY G LEG+QSATYYLL+LQ KEF AIPA SWYNFNKVAQYKQLTLEEAEEKM+N
Sbjct: 124  ETGQFQYQGHLEGSQSATYYLLILQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMRN 183

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGYERWMMKAANNGPAAFGE  K L+ +               +DEEGN SD+G 
Sbjct: 184  RRKTADGYERWMMKAANNGPAAFGEVEK-LDDKDSGAASGRGRKKAAGDDEEGNVSDRGD 242

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGLNK                            WEHEEIFTDDDEAVG
Sbjct: 243  EDEEEEAARKNRLGLNKRGGDDDEEGPRGGDHDIDDDDIEKGDD-WEHEEIFTDDDEAVG 301

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            ND EEREDLAPEVPAPPEIKQD                            R  G+N    
Sbjct: 302  NDREEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLG---RAGGLNDSDA 358

Query: 722  XXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSDSSPVKP----AGKGTPSTSKSAKGKRK 889
                           SPVLAPK    PKEEP+D+SP KP    + KGTPSTSKSAKGKRK
Sbjct: 359  EDDDDDDDMDEDVSISPVLAPK--QTPKEEPADNSPAKPMTSASSKGTPSTSKSAKGKRK 416

Query: 890  INGDDTKVASSA-HKKVKTENEQKPSVKDEPP---KSSAAPRGTPQSAAKTGSSSQGPVS 1057
            +N D+ K  + A  KKVKTENE KP+VK+E     KSSA P+  P SA KTGS+S  PV+
Sbjct: 417  LNSDEAKQTNVAPQKKVKTENELKPTVKEESAPTSKSSATPKAAPPSA-KTGSTS--PVT 473

Query: 1058 EDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNGQNHIVLRDR 1237
            E+EIRAVLLQ  PVTTQDLV+RFK+RL+S EDKKAFA+IL+RISKI KT+G +++VLRD+
Sbjct: 474  EEEIRAVLLQNGPVTTQDLVARFKSRLKSSEDKKAFADILRRISKIQKTSGSSYVVLRDK 533


>ref|XP_002322538.2| transcription initiation factor IIF alpha subunit family protein
            [Populus trichocarpa] gi|550320589|gb|EEF04299.2|
            transcription initiation factor IIF alpha subunit family
            protein [Populus trichocarpa]
          Length = 540

 Score =  408 bits (1049), Expect = e-111
 Identities = 241/425 (56%), Positives = 273/425 (64%), Gaps = 13/425 (3%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWY--NFNKVAQYKQLTLEEAEEKM 175
            E  QSQY G LEG+QSATYYLLM+  KEF AIPAGSWY  NFNKVA YKQLTLEEAEEKM
Sbjct: 123  ETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYVYNFNKVAHYKQLTLEEAEEKM 182

Query: 176  KNRRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDK 355
            KNRR+TADGYERWMMKAANNG AAFGE  KV + E               +D+EGN SD+
Sbjct: 183  KNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVSDR 242

Query: 356  GXXXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEA 535
            G         RKSRLGLNK                            WEHEEIFTDDDEA
Sbjct: 243  GEEDEEEEAGRKSRLGLNK-QGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEA 301

Query: 536  VGNDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXX 715
            V  DPEEREDLAPEVPAPPEIKQD                            + NG+N  
Sbjct: 302  VAIDPEEREDLAPEVPAPPEIKQD---EDDEDEENEEGGLSKSGKELKKLLGKANGLNES 358

Query: 716  XXXXXXXXXXXXXXXRTSPVLAPKVKD-APKEEPSDSSPVKP----AGKGTPSTSKSAKG 880
                             SPVLAPK KD  PKEE +D SP KP    + KGTPSTSKSAKG
Sbjct: 359  DVEDDDDDEDMDDD--ISPVLAPKQKDVVPKEEAADISPAKPTPSGSAKGTPSTSKSAKG 416

Query: 881  KRKINGDDTKVASSAH-KKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGSS--S 1042
            KRK+NG+D K ++ A  KKVKTENE KP+VK+E     K +A P+ TP S +KTGS+  S
Sbjct: 417  KRKLNGEDAKSSNGAPVKKVKTENEVKPAVKEESSPATKGTATPKVTPPS-SKTGSTSGS 475

Query: 1043 QGPVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNGQNHI 1222
             GPV+E+EIRAVLLQ  PVTTQDLV+RFK+RLR+PEDKKAFA+IL+RISKI KT+G N++
Sbjct: 476  TGPVTEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNYV 535

Query: 1223 VLRDR 1237
            VLRD+
Sbjct: 536  VLRDK 540


>gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus vulgaris]
          Length = 540

 Score =  405 bits (1042), Expect = e-110
 Identities = 233/424 (54%), Positives = 270/424 (63%), Gaps = 12/424 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  QSQ+ G LEGAQSATYYLLM++ KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 123  ETGQSQFQGHLEGAQSATYYLLMMERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 182

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            R++TADGYERWMMKAANNGPAAFGE  +  E E               EDEEG+ SDKG 
Sbjct: 183  RKKTADGYERWMMKAANNGPAAFGERGRFDEKE-SNVGGGGKNRKKTDEDEEGHVSDKGE 241

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    R+SRLGLNK                            WEHEEIFTDDDEAVG
Sbjct: 242  EDEDDEVARRSRLGLNK-KGGDDDEEGPRGGDLDQDDDDIEKGDDWEHEEIFTDDDEAVG 300

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            NDPEEREDLAPEVPAPPEIKQD                            RT+G+N    
Sbjct: 301  NDPEEREDLAPEVPAPPEIKQD---DEDEDEDNEEGGGLSKSGKELKKLLRTSGLNESDA 357

Query: 722  XXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSDSSPVKPA----GKGTPSTSKSAKGKRK 889
                            PV+A K KDAPKEEP+D+SP KPA     +GT STSK +KGKRK
Sbjct: 358  EDDDDDDDVDDEAGVPPVIASKPKDAPKEEPADNSPSKPAVTGTARGTLSTSKPSKGKRK 417

Query: 890  INGDDTKVASSA-HKKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGSSS----Q 1045
            +N ++TK A+ A  KKVK ENE K +VKDE     K++   +G P + +  G SS     
Sbjct: 418  LN-EETKAANGAPPKKVKIENEPKSTVKDENGSTSKNNTPSKGVPPTPSSKGGSSSPIAS 476

Query: 1046 GPVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNGQNHIV 1225
            GPVSE+EIRAVL+Q+ P+TTQDLV++F+ARLR PEDKKAFA+ILKRISKI KTN  ++++
Sbjct: 477  GPVSEEEIRAVLMQKTPLTTQDLVAKFRARLRCPEDKKAFADILKRISKIQKTNASSYVI 536

Query: 1226 LRDR 1237
            LRDR
Sbjct: 537  LRDR 540


>ref|XP_002308775.1| transcription initiation factor IIF alpha subunit family protein
            [Populus trichocarpa] gi|222854751|gb|EEE92298.1|
            transcription initiation factor IIF alpha subunit family
            protein [Populus trichocarpa]
          Length = 541

 Score =  403 bits (1035), Expect = e-109
 Identities = 238/425 (56%), Positives = 271/425 (63%), Gaps = 13/425 (3%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWY--NFNKVAQYKQLTLEEAEEKM 175
            E  Q QY G LEG+QSATYYLLM+  KEF AIPAGSWY  NFNKVA YKQLTLEEAEEKM
Sbjct: 123  ETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEEKM 182

Query: 176  KNRRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDK 355
            KNRR+TADGYERWMMKAA+NG AAFGE  K  + +               +D+EGN SDK
Sbjct: 183  KNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVSDK 242

Query: 356  GXXXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEA 535
            G         RKSRLGLNK                            WEHEEIFTDDDEA
Sbjct: 243  GEEDEEEEAGRKSRLGLNK-GGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEA 301

Query: 536  VGNDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXX 715
            V  DPEEREDLAPEVPAPPEIKQD                            + NG+N  
Sbjct: 302  VAIDPEEREDLAPEVPAPPEIKQD---EEDEDEENEEGGLSKSGKELKKLLGKANGLNES 358

Query: 716  XXXXXXXXXXXXXXXRTSPVLAPKVKDA-PKEEPSDSSPVKP----AGKGTPSTSKSAKG 880
                             SPVLAPK KDA PKEEP+D+SP KP    + KGTPSTSKSAKG
Sbjct: 359  DAEDDDDDDDMDDD--ISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKG 416

Query: 881  KRKINGDDTKVASSAH-KKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGSSS-- 1042
            KRK+N DD K ++ A  KKVKTENE KP+VK+E     K +A P+  P S++KTG +S  
Sbjct: 417  KRKLNADDAKTSNGAPVKKVKTENEVKPTVKEESSPATKGTATPKIMP-SSSKTGPTSGP 475

Query: 1043 QGPVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNGQNHI 1222
             GPV+E+EIRAVLLQ  PVTTQDLV+RFK+RLR+PEDKKAFA+IL+RISKI KT+G N +
Sbjct: 476  TGPVTEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNFV 535

Query: 1223 VLRDR 1237
            VLRD+
Sbjct: 536  VLRDK 540


>ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Citrus sinensis]
            gi|568825955|ref|XP_006467341.1| PREDICTED: transcription
            initiation factor IIF subunit alpha-like isoform X2
            [Citrus sinensis]
          Length = 538

 Score =  400 bits (1027), Expect = e-108
 Identities = 239/424 (56%), Positives = 271/424 (63%), Gaps = 12/424 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q+QY G LEG+QSATYYLL++ +KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 123  ETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 182

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGYERWMMKAANNG AAFGE  K  + E               ED EGN SD+G 
Sbjct: 183  RRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDED-EGNVSDRGE 241

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGLNK                            WEHEEIFTDDDEAVG
Sbjct: 242  EDEDEEAKRKNRLGLNK-RGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVG 300

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMN-XXX 718
            NDPEEREDLAPEVPAPPEIKQD                            R NG+N    
Sbjct: 301  NDPEEREDLAPEVPAPPEIKQD----EEDEDEEEEGGLSKSGKELKKLLGRANGLNESDA 356

Query: 719  XXXXXXXXXXXXXXRTSPVLAPKVKDAP-KEEPSDSSPVKPA----GKGTPSTSKSAKGK 883
                            SP+LAPK KD P KEEP+D+SP KPA    G+ TPSTSKSAKGK
Sbjct: 357  EDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGK 416

Query: 884  RKINGDDTKVASSAH-KKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGS-SSQG 1048
            RK NGDD +  S A  KKVKTENE K S +DE     KSSA  +G   S+++TGS S+ G
Sbjct: 417  RKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGA--SSSRTGSTSASG 474

Query: 1049 PVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNG-QNHIV 1225
            PV+ +EIRAVLLQ+APVTTQDLV++FK RLRS ED+ AFA+ILKRISKI KTNG  N++V
Sbjct: 475  PVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVV 534

Query: 1226 LRDR 1237
            LR++
Sbjct: 535  LREK 538


>ref|XP_006449856.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
            gi|557552467|gb|ESR63096.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
          Length = 420

 Score =  400 bits (1027), Expect = e-108
 Identities = 239/424 (56%), Positives = 271/424 (63%), Gaps = 12/424 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q+QY G LEG+QSATYYLL++ +KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 5    ETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 64

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGYERWMMKAANNG AAFGE  K  + E               ED EGN SD+G 
Sbjct: 65   RRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDED-EGNVSDRGE 123

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGLNK                            WEHEEIFTDDDEAVG
Sbjct: 124  EDEDEEAKRKNRLGLNK-RGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVG 182

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMN-XXX 718
            NDPEEREDLAPEVPAPPEIKQD                            R NG+N    
Sbjct: 183  NDPEEREDLAPEVPAPPEIKQD----EEDEDEEEEGGLSKSGKELKKLLGRANGLNESDA 238

Query: 719  XXXXXXXXXXXXXXRTSPVLAPKVKDAP-KEEPSDSSPVKPA----GKGTPSTSKSAKGK 883
                            SP+LAPK KD P KEEP+D+SP KPA    G+ TPSTSKSAKGK
Sbjct: 239  EDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGK 298

Query: 884  RKINGDDTKVASSAH-KKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGS-SSQG 1048
            RK NGDD +  S A  KKVKTENE K S +DE     KSSA  +G   S+++TGS S+ G
Sbjct: 299  RKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGA--SSSRTGSTSASG 356

Query: 1049 PVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNG-QNHIV 1225
            PV+ +EIRAVLLQ+APVTTQDLV++FK RLRS ED+ AFA+ILKRISKI KTNG  N++V
Sbjct: 357  PVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVV 416

Query: 1226 LRDR 1237
            LR++
Sbjct: 417  LREK 420


>ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
            gi|567915083|ref|XP_006449855.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
            gi|557552465|gb|ESR63094.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
            gi|557552466|gb|ESR63095.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
          Length = 538

 Score =  400 bits (1027), Expect = e-108
 Identities = 239/424 (56%), Positives = 271/424 (63%), Gaps = 12/424 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q+QY G LEG+QSATYYLL++ +KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 123  ETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 182

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGYERWMMKAANNG AAFGE  K  + E               ED EGN SD+G 
Sbjct: 183  RRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDED-EGNVSDRGE 241

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGLNK                            WEHEEIFTDDDEAVG
Sbjct: 242  EDEDEEAKRKNRLGLNK-RGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVG 300

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMN-XXX 718
            NDPEEREDLAPEVPAPPEIKQD                            R NG+N    
Sbjct: 301  NDPEEREDLAPEVPAPPEIKQD----EEDEDEEEEGGLSKSGKELKKLLGRANGLNESDA 356

Query: 719  XXXXXXXXXXXXXXRTSPVLAPKVKDAP-KEEPSDSSPVKPA----GKGTPSTSKSAKGK 883
                            SP+LAPK KD P KEEP+D+SP KPA    G+ TPSTSKSAKGK
Sbjct: 357  EDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGK 416

Query: 884  RKINGDDTKVASSAH-KKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGS-SSQG 1048
            RK NGDD +  S A  KKVKTENE K S +DE     KSSA  +G   S+++TGS S+ G
Sbjct: 417  RKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKGA--SSSRTGSTSASG 474

Query: 1049 PVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNG-QNHIV 1225
            PV+ +EIRAVLLQ+APVTTQDLV++FK RLRS ED+ AFA+ILKRISKI KTNG  N++V
Sbjct: 475  PVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKTNGPSNYVV 534

Query: 1226 LRDR 1237
            LR++
Sbjct: 535  LREK 538


>ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Populus trichocarpa]
            gi|550335193|gb|ERP58675.1| hypothetical protein
            POPTR_0006s01070g [Populus trichocarpa]
          Length = 536

 Score =  389 bits (1000), Expect = e-105
 Identities = 232/424 (54%), Positives = 265/424 (62%), Gaps = 12/424 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWY--NFNKVAQYKQLTLEEAEEKM 175
            E  Q QY G LEG+QSATYYLLM+  KEF AIPAGSWY  NFNKVA YKQLTLEEAEEKM
Sbjct: 123  ETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEEKM 182

Query: 176  KNRRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDK 355
            KNRR+TADGYERWMMKAA+NG AAFGE  K  + +               +D+EGN SDK
Sbjct: 183  KNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVSDK 242

Query: 356  GXXXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEA 535
            G         RKSRLGLNK                            WEHEEIFTDDDEA
Sbjct: 243  GEEDEEEEAGRKSRLGLNK-GGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEA 301

Query: 536  VGNDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXX 715
            V  DPEEREDLAPEVPAPPEIKQD                            + NG+N  
Sbjct: 302  VAIDPEEREDLAPEVPAPPEIKQD---EEDEDEENEEGGLSKSGKELKKLLGKANGLNES 358

Query: 716  XXXXXXXXXXXXXXXRTSPVLAPKVKDA-PKEEPSDSSPVKP----AGKGTPSTSKSAKG 880
                             SPVLAPK KDA PKEEP+D+SP KP    + KGTPSTSKSAKG
Sbjct: 359  DAEDDDDDDDMDDD--ISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKG 416

Query: 881  KRKINGDDTKVASSAHKKVKTENEQKPSVKDE---PPKSSAAPRGTPQSAAKTGSSS--Q 1045
            KRK+N DD K ++ A  K     E KP+VK+E     K +A P+  P S++KTG +S   
Sbjct: 417  KRKLNADDAKTSNGAPVK----KEVKPTVKEESSPATKGTATPKIMP-SSSKTGPTSGPT 471

Query: 1046 GPVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNGQNHIV 1225
            GPV+E+EIRAVLLQ  PVTTQDLV+RFK+RLR+PEDKKAFA+IL+RISKI KT+G N +V
Sbjct: 472  GPVTEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNFVV 531

Query: 1226 LRDR 1237
            LRD+
Sbjct: 532  LRDK 535


>gb|EOY28871.1| Transcription activators,DNA binding,RNA polymerase II transcription
            factors,catalytics,transcription initiation factors
            isoform 3 [Theobroma cacao]
          Length = 496

 Score =  388 bits (996), Expect = e-105
 Identities = 231/435 (53%), Positives = 271/435 (62%), Gaps = 23/435 (5%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q+QY G LEG+QSATYYLLM+Q KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 70   ETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 129

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGYERWMMKAANNG AAFGE  K  + +               +D+EG+ SD+G 
Sbjct: 130  RRKTADGYERWMMKAANNGAAAFGEVEK-FDDKDNSVAGGKGRKKPTGDDDEGHVSDRGE 188

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGL+K                            WEHEEIFTDDDEAVG
Sbjct: 189  EDEEEEAARKNRLGLDK-KGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVG 247

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            N+PEER DLAPEVPAPPEIK+D                            +  G+N    
Sbjct: 248  NEPEER-DLAPEVPAPPEIKED----EDEEDEEQEGGLSKSGKELKKLLGKAGGLN-DSD 301

Query: 722  XXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSDSSPVKPA----GKGTPSTSKSAKGKRK 889
                           +P  A K KDAPKEEP+D+SP+KPA     +GT + SKSAKGKRK
Sbjct: 302  ADDDDDDDDDDDMSFNPAPASKQKDAPKEEPADNSPMKPASSASARGTSTASKSAKGKRK 361

Query: 890  INGDDTKVASSAH-KKVKTENEQKPSVKDE---PPKSSAAPRGTPQSA------------ 1021
             NGDDTK ++    KKVK+E + K SVK+E     K S  P+GTP SA            
Sbjct: 362  ANGDDTKASNGTPLKKVKSETDSKSSVKEESASASKGSVPPKGTPSSAKAGSTSSAVTSS 421

Query: 1022 -AKTGS-SSQGPVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKI 1195
             AK GS S+ GPV+E+EIRAVLLQ+APVTT DLV++FKARL+SPEDKKAFA+IL+RISKI
Sbjct: 422  SAKAGSASTAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFADILRRISKI 481

Query: 1196 SKTNG-QNHIVLRDR 1237
             KTNG  N++VLRD+
Sbjct: 482  QKTNGPNNYVVLRDK 496


>gb|EOY28870.1| Transcription activators,DNA binding,RNA polymerase II transcription
            factors,catalytics,transcription initiation factors
            isoform 2 [Theobroma cacao]
          Length = 473

 Score =  388 bits (996), Expect = e-105
 Identities = 231/435 (53%), Positives = 271/435 (62%), Gaps = 23/435 (5%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q+QY G LEG+QSATYYLLM+Q KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 47   ETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 106

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGYERWMMKAANNG AAFGE  K  + +               +D+EG+ SD+G 
Sbjct: 107  RRKTADGYERWMMKAANNGAAAFGEVEK-FDDKDNSVAGGKGRKKPTGDDDEGHVSDRGE 165

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGL+K                            WEHEEIFTDDDEAVG
Sbjct: 166  EDEEEEAARKNRLGLDK-KGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVG 224

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            N+PEER DLAPEVPAPPEIK+D                            +  G+N    
Sbjct: 225  NEPEER-DLAPEVPAPPEIKED----EDEEDEEQEGGLSKSGKELKKLLGKAGGLN-DSD 278

Query: 722  XXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSDSSPVKPA----GKGTPSTSKSAKGKRK 889
                           +P  A K KDAPKEEP+D+SP+KPA     +GT + SKSAKGKRK
Sbjct: 279  ADDDDDDDDDDDMSFNPAPASKQKDAPKEEPADNSPMKPASSASARGTSTASKSAKGKRK 338

Query: 890  INGDDTKVASSAH-KKVKTENEQKPSVKDE---PPKSSAAPRGTPQSA------------ 1021
             NGDDTK ++    KKVK+E + K SVK+E     K S  P+GTP SA            
Sbjct: 339  ANGDDTKASNGTPLKKVKSETDSKSSVKEESASASKGSVPPKGTPSSAKAGSTSSAVTSS 398

Query: 1022 -AKTGS-SSQGPVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKI 1195
             AK GS S+ GPV+E+EIRAVLLQ+APVTT DLV++FKARL+SPEDKKAFA+IL+RISKI
Sbjct: 399  SAKAGSASTAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFADILRRISKI 458

Query: 1196 SKTNG-QNHIVLRDR 1237
             KTNG  N++VLRD+
Sbjct: 459  QKTNGPNNYVVLRDK 473


>gb|EOY28869.1| Transcription activators,DNA binding,RNA polymerase II transcription
            factors,catalytics,transcription initiation factors
            isoform 1 [Theobroma cacao]
          Length = 549

 Score =  388 bits (996), Expect = e-105
 Identities = 231/435 (53%), Positives = 271/435 (62%), Gaps = 23/435 (5%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q+QY G LEG+QSATYYLLM+Q KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 123  ETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 182

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGYERWMMKAANNG AAFGE  K  + +               +D+EG+ SD+G 
Sbjct: 183  RRKTADGYERWMMKAANNGAAAFGEVEK-FDDKDNSVAGGKGRKKPTGDDDEGHVSDRGE 241

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGL+K                            WEHEEIFTDDDEAVG
Sbjct: 242  EDEEEEAARKNRLGLDK-KGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVG 300

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            N+PEER DLAPEVPAPPEIK+D                            +  G+N    
Sbjct: 301  NEPEER-DLAPEVPAPPEIKED----EDEEDEEQEGGLSKSGKELKKLLGKAGGLN-DSD 354

Query: 722  XXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSDSSPVKPA----GKGTPSTSKSAKGKRK 889
                           +P  A K KDAPKEEP+D+SP+KPA     +GT + SKSAKGKRK
Sbjct: 355  ADDDDDDDDDDDMSFNPAPASKQKDAPKEEPADNSPMKPASSASARGTSTASKSAKGKRK 414

Query: 890  INGDDTKVASSAH-KKVKTENEQKPSVKDE---PPKSSAAPRGTPQSA------------ 1021
             NGDDTK ++    KKVK+E + K SVK+E     K S  P+GTP SA            
Sbjct: 415  ANGDDTKASNGTPLKKVKSETDSKSSVKEESASASKGSVPPKGTPSSAKAGSTSSAVTSS 474

Query: 1022 -AKTGS-SSQGPVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKI 1195
             AK GS S+ GPV+E+EIRAVLLQ+APVTT DLV++FKARL+SPEDKKAFA+IL+RISKI
Sbjct: 475  SAKAGSASTAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFADILRRISKI 534

Query: 1196 SKTNG-QNHIVLRDR 1237
             KTNG  N++VLRD+
Sbjct: 535  QKTNGPNNYVVLRDK 549


>gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus vulgaris]
          Length = 540

 Score =  387 bits (994), Expect = e-105
 Identities = 231/424 (54%), Positives = 265/424 (62%), Gaps = 12/424 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  QSQY G LEG+QSATYYLLM + KEF AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 123  ETGQSQYQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 182

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            R++TADGY+RWMMKAANNGPAAFG+  K  E E               E+EEG+ SDKG 
Sbjct: 183  RKKTADGYQRWMMKAANNGPAAFGDHGKFDEKE--SNTGGGRSRKKTGEEEEGHVSDKGE 240

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGL K                            WEHEEIFTDDDEAVG
Sbjct: 241  EDEDDESERKNRLGLYK-RPADDDEEGPRGGDHDLEDDDVEKGDDWEHEEIFTDDDEAVG 299

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMN-XXX 718
            NDPEEREDLAPEVPAPPEIKQD                            + +G+N    
Sbjct: 300  NDPEEREDLAPEVPAPPEIKQD--EEEEDEDNEEGGGLSKSGKELKKLLGKASGLNESDA 357

Query: 719  XXXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSDSSPVKPA----GKGTPSTSKSAKGKR 886
                             PV+A K KDAPKEEP D+SP KP      +GTPS SKS+KGKR
Sbjct: 358  EDEDDDDDDMDDEVGNPPVIATKTKDAPKEEPVDNSPSKPTATGPARGTPS-SKSSKGKR 416

Query: 887  KINGDDTKVASSAHKKVKTENEQKPSVKD---EPPKSSAAPRGT-PQSAAKTGSS--SQG 1048
            K N +     ++  KKVK ENE K S KD      KS+A P+GT P S++K GSS  + G
Sbjct: 417  KSNEEVKPTNTATPKKVKQENEPKSSAKDVNGSASKSNAPPKGTPPSSSSKPGSSATASG 476

Query: 1049 PVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKT-NGQNHIV 1225
            PVSE+EIRAVL Q+ PVTTQDLV++FKARLRS EDK+AFAEILKRISKI KT NG ++++
Sbjct: 477  PVSEEEIRAVLRQKTPVTTQDLVAKFKARLRSSEDKQAFAEILKRISKIQKTANGSSYVI 536

Query: 1226 LRDR 1237
            LRD+
Sbjct: 537  LRDK 540


>ref|XP_006352367.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X4 [Solanum tuberosum]
          Length = 535

 Score =  385 bits (990), Expect = e-104
 Identities = 231/422 (54%), Positives = 265/422 (62%), Gaps = 10/422 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q Q+HG LEGAQSA YYLLM+Q +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 122  ETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGY+RWMMKAANNGPAAFGE  +  + E               ED EGNASD G 
Sbjct: 182  RRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKTSGDED-EGNASDHGD 240

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGLNK                            WEHEEIFTDDDEAVG
Sbjct: 241  EDEEEEAARKNRLGLNK-RGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG 299

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            NDPEEREDLAPE+PAPPEIKQD                            + NG+N    
Sbjct: 300  NDPEEREDLAPEIPAPPEIKQD--EDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDA 357

Query: 722  XXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSD-SSPVKPA----GKGTPSTSKSAKGKR 886
                           SPVLAPK K+APKEEP + +SP+KPA     +GTP TSKSAK KR
Sbjct: 358  EDDDDDDDTEED--ISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTP-TSKSAKTKR 414

Query: 887  KINGDDTKVASSAH-KKVKTENEQKPSVKDEPP---KSSAAPRGTPQSAAKTGSSSQGPV 1054
            K NGD++K  S A  KKVKTE + KP  KDE P   K+SA P+G   S+    S + GPV
Sbjct: 415  KANGDESKPTSGAPLKKVKTETDAKPG-KDETPSSAKNSALPKGASSSSKTAPSPATGPV 473

Query: 1055 SEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISK-TNGQNHIVLR 1231
            +EDEIRAVLLQR PVTTQDLVS+FK+RL+  EDK AFAE+L++ISKI K T G +++VLR
Sbjct: 474  TEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLR 533

Query: 1232 DR 1237
            +R
Sbjct: 534  ER 535


>ref|XP_006352364.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Solanum tuberosum]
            gi|565371548|ref|XP_006352365.1| PREDICTED: transcription
            initiation factor IIF subunit alpha-like isoform X2
            [Solanum tuberosum] gi|565371550|ref|XP_006352366.1|
            PREDICTED: transcription initiation factor IIF subunit
            alpha-like isoform X3 [Solanum tuberosum]
          Length = 538

 Score =  385 bits (990), Expect = e-104
 Identities = 231/422 (54%), Positives = 265/422 (62%), Gaps = 10/422 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q Q+HG LEGAQSA YYLLM+Q +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 122  ETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGY+RWMMKAANNGPAAFGE  +  + E               ED EGNASD G 
Sbjct: 182  RRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKTSGDED-EGNASDHGD 240

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGLNK                            WEHEEIFTDDDEAVG
Sbjct: 241  EDEEEEAARKNRLGLNK-RGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG 299

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            NDPEEREDLAPE+PAPPEIKQD                            + NG+N    
Sbjct: 300  NDPEEREDLAPEIPAPPEIKQD--EDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDA 357

Query: 722  XXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSD-SSPVKPA----GKGTPSTSKSAKGKR 886
                           SPVLAPK K+APKEEP + +SP+KPA     +GTP TSKSAK KR
Sbjct: 358  EDDDDDDDTEED--ISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTP-TSKSAKTKR 414

Query: 887  KINGDDTKVASSAH-KKVKTENEQKPSVKDEPP---KSSAAPRGTPQSAAKTGSSSQGPV 1054
            K NGD++K  S A  KKVKTE + KP  KDE P   K+SA P+G   S+    S + GPV
Sbjct: 415  KANGDESKPTSGAPLKKVKTETDAKPG-KDETPSSAKNSALPKGASSSSKTAPSPATGPV 473

Query: 1055 SEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISK-TNGQNHIVLR 1231
            +EDEIRAVLLQR PVTTQDLVS+FK+RL+  EDK AFAE+L++ISKI K T G +++VLR
Sbjct: 474  TEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLR 533

Query: 1232 DR 1237
            +R
Sbjct: 534  ER 535


>ref|XP_002529600.1| tfiif-alpha, putative [Ricinus communis] gi|223530933|gb|EEF32792.1|
            tfiif-alpha, putative [Ricinus communis]
          Length = 584

 Score =  383 bits (984), Expect = e-103
 Identities = 223/423 (52%), Positives = 260/423 (61%), Gaps = 11/423 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q QYHG LEG+QSATYYLL+LQ KEF AIPA SWYNFNKVAQYK LTLEEAEEKMKN
Sbjct: 167  ETGQYQYHGHLEGSQSATYYLLILQGKEFVAIPAASWYNFNKVAQYKMLTLEEAEEKMKN 226

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGYERWMMKAANNGPAAFGE  K  + +V              +D+EG  SDKG 
Sbjct: 227  RRKTADGYERWMMKAANNGPAAFGEMEKPDDKDVRTTSGRGRRKTAGDDDDEGKISDKGE 286

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGLN+                            WEHEEIFTDDDEAVG
Sbjct: 287  EDEEEEMSRKNRLGLNR-QGGGDDDEGPRGGDHDMDDDDVEKGDDWEHEEIFTDDDEAVG 345

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            NDPEER+DL PE+PAPPEIKQD                            R+ G++    
Sbjct: 346  NDPEERQDLGPELPAPPEIKQD---EDDEDEENEEGGLSKSGKELKALLGRSGGLDDTDA 402

Query: 722  XXXXXXXXXXXXXRTSPVLAPKVKDAP-KEEPSDSSPVKP----AGKGTPSTSKSAKGKR 886
                           SPVLA K KDAP KEEP D+SP KP    + KG  S SKSAKGKR
Sbjct: 403  EDDDDDDMDEDTG-LSPVLAQKQKDAPIKEEPGDNSPAKPMHSSSAKGALSASKSAKGKR 461

Query: 887  KINGDDTKVAS-SAHKKVKTENEQKPSVKDE-----PPKSSAAPRGTPQSAAKTGSSSQG 1048
            K NGDD K ++ S  KKVKTENE K  VK+E       KSSA P+G   S     +SS G
Sbjct: 462  KTNGDDGKTSNVSPQKKVKTENESKHIVKEENVPTSKSKSSANPKGAAASLRTESTSSTG 521

Query: 1049 PVSEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISKTNGQNHIVL 1228
             V+++EI+AVLLQ  PVTTQDLV++FK+RL++ EDK+AF   LKRIS+I KT+G +++VL
Sbjct: 522  FVTDEEIKAVLLQNGPVTTQDLVAKFKSRLKTREDKEAFTHTLKRISRIQKTSGGSYVVL 581

Query: 1229 RDR 1237
            RD+
Sbjct: 582  RDK 584


>ref|XP_004250258.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Solanum lycopersicum]
          Length = 534

 Score =  382 bits (982), Expect = e-103
 Identities = 230/422 (54%), Positives = 265/422 (62%), Gaps = 10/422 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  Q Q+HG LEGAQSA YYLLM+Q +E  AIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 122  ETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            RR+TADGY+RWMMKAANNGPAAFGE  +  + E               ED EGNASD G 
Sbjct: 182  RRKTADGYQRWMMKAANNGPAAFGELERFDDKEGGSGGTRGRKKTSGDED-EGNASDHGD 240

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+RLGLNK                            WEHEEIFTDDDEAVG
Sbjct: 241  EDEEEEAARKNRLGLNK-RGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG 299

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            NDPEEREDLAPE+PAPPEIKQD                            + NG+N    
Sbjct: 300  NDPEEREDLAPEIPAPPEIKQD--EDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDE 357

Query: 722  XXXXXXXXXXXXXRTSPVLAPKVKDAPKEEPSD-SSPVKPA----GKGTPSTSKSAKGKR 886
                           SPVLAPK K+APKEEP + +SP+K A     +GTP TSKSAK KR
Sbjct: 358  DDDDDDDTEED---ISPVLAPKPKEAPKEEPVETNSPLKAAASGSNRGTP-TSKSAKTKR 413

Query: 887  KINGDDTKVASSAH-KKVKTENEQKPSVKDEPP---KSSAAPRGTPQSAAKTGSSSQGPV 1054
            K NGD++K  S A  KKVKTE + KP  KDE P   K++A P+G   S+    SS+ GPV
Sbjct: 414  KANGDESKPTSGAPLKKVKTEADAKPG-KDETPSSAKNTALPKGASSSSKTAPSSATGPV 472

Query: 1055 SEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISK-TNGQNHIVLR 1231
            +EDEIRAVLLQR PVTTQDLVS+FK+RL+  EDK AFAE+L++ISKI K T G +++VLR
Sbjct: 473  TEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLR 532

Query: 1232 DR 1237
            +R
Sbjct: 533  ER 534


>gb|EMJ12738.1| hypothetical protein PRUPE_ppa003970mg [Prunus persica]
          Length = 537

 Score =  379 bits (973), Expect = e-102
 Identities = 226/422 (53%), Positives = 262/422 (62%), Gaps = 10/422 (2%)
 Frame = +2

Query: 2    EVNQSQYHGQLEGAQSATYYLLMLQAKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 181
            E  QSQY G LEGAQ+ATYYLLM Q KEF+AIPAGSW+NFNKVAQYKQLTLEEAEEK+KN
Sbjct: 123  ETGQSQYQGHLEGAQTATYYLLMRQGKEFSAIPAGSWFNFNKVAQYKQLTLEEAEEKIKN 182

Query: 182  RRRTADGYERWMMKAANNGPAAFGESSKVLEIEVXXXXXXXXXXXXXXEDEEGNASDKGX 361
            R++TADGYERWMMKAANNG AAFGE  +  + +               +D EGN SDKG 
Sbjct: 183  RKKTADGYERWMMKAANNGAAAFGEVER-FDKDNSVTSGKGRKKAGDDDDGEGNVSDKGE 241

Query: 362  XXXXXXXXRKSRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 541
                    RK+R  LNK                            WEHEEIFTDDDEAVG
Sbjct: 242  EDEEEELARKNR--LNKKGGDDDDDDGARGADADLDDDDVEKGDDWEHEEIFTDDDEAVG 299

Query: 542  NDPEEREDLAPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTNGMNXXXX 721
            N+PEEREDL  EVPAPPEIKQD                            RT G++    
Sbjct: 300  NNPEEREDLELEVPAPPEIKQD---DEDEDEDDKEGGLSKSGKELKKLLGRTGGLDDSDA 356

Query: 722  XXXXXXXXXXXXXRTSP-VLAPKVKDAPKEEPSDSSPVKP----AGKGTPSTSKSAKGKR 886
                            P   APK KDA KEEPSD+SP KP    + +GTPST+KSAKGKR
Sbjct: 357  EDDDDDDDDMDDDIGFPQAAAPKQKDASKEEPSDNSPSKPVPSGSARGTPSTAKSAKGKR 416

Query: 887  KINGDDTKVASSA-HKKVKTENEQKPSVKDEP---PKSSAAPRGTPQSAAKTGSSSQGPV 1054
            K++ DD K ++SA  KKVK+ENEQK S K+EP    KSS   +GTP S     +SS GPV
Sbjct: 417  KLSADDAKTSNSAPPKKVKSENEQKVSTKEEPASASKSSTPSKGTP-SVKVEPTSSSGPV 475

Query: 1055 SEDEIRAVLLQRAPVTTQDLVSRFKARLRSPEDKKAFAEILKRISKISK-TNGQNHIVLR 1231
            +E+EIR VL+QR PVTTQDLV+RFKARLR  EDK AFA IL++ISKI K TNG +++VLR
Sbjct: 476  TEEEIRTVLVQRTPVTTQDLVARFKARLRLQEDKTAFAAILRKISKIQKTTNGSSYVVLR 535

Query: 1232 DR 1237
            D+
Sbjct: 536  DK 537