BLASTX nr result
ID: Rheum21_contig00000058
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00000058
(246 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004294267.1| PREDICTED: chlorophyll a-b binding protein 4... 75 1e-11
gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum... 73 3e-11
gb|AAA33396.1| light-harvesting chlorophyll a/b protein precurso... 73 3e-11
ref|XP_006356073.1| PREDICTED: chlorophyll a-b binding protein 3... 72 6e-11
gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum ... 72 6e-11
emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [S... 72 8e-11
ref|XP_006356077.1| PREDICTED: chlorophyll a-b binding protein 3... 72 1e-10
ref|XP_006356075.1| PREDICTED: chlorophyll a-b binding protein 3... 72 1e-10
ref|XP_004234241.1| PREDICTED: uncharacterized protein LOC101245... 72 1e-10
gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum l... 72 1e-10
sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding pro... 72 1e-10
emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [S... 72 1e-10
ref|XP_006356080.1| PREDICTED: chlorophyll a-b binding protein 3... 71 1e-10
ref|XP_006356078.1| PREDICTED: chlorophyll a-b binding protein 3... 71 1e-10
ref|XP_006356076.1| PREDICTED: chlorophyll a-b binding protein 3... 71 1e-10
sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding pro... 71 2e-10
emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [So... 71 2e-10
ref|XP_006361530.1| PREDICTED: chlorophyll a-b binding protein 3... 71 2e-10
ref|XP_004303878.1| PREDICTED: chlorophyll a-b binding protein 4... 71 2e-10
dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein... 70 2e-10
>ref|XP_004294267.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 267
Score = 74.7 bits (182), Expect = 1e-11
Identities = 37/53 (69%), Positives = 39/53 (73%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
G+AVKLSPSTS +FGEGRVTMR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GQAVKLSPSTSTLFGEGRVTMRKTAAKSKNVSSGSPWYGPDRVKYLGPFSGEA 67
>gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 73.2 bits (178), Expect = 3e-11
Identities = 35/53 (66%), Positives = 39/53 (73%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKL+P+TS+I GEGR+TMR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GKAVKLNPTTSQILGEGRITMRKTAGKTKNVSSDSPWYGPDRVKYLGPFSGEA 67
>gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 73.2 bits (178), Expect = 3e-11
Identities = 35/53 (66%), Positives = 39/53 (73%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKL+P+ SE+FGEGRV+MR PWYGPDRVKYLGPFSGEA
Sbjct: 14 GKAVKLAPAASEVFGEGRVSMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEA 66
>ref|XP_006356073.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Solanum tuberosum]
Length = 267
Score = 72.4 bits (176), Expect = 6e-11
Identities = 36/53 (67%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GR+TMR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GKAVKLSPSSSEITGNGRITMRKTAAKAKPASSGSPWYGPDRVKYLGPFSGEA 67
>gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 72.4 bits (176), Expect = 6e-11
Identities = 36/53 (67%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GR+TMR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GKAVKLSPSSSEITGNGRITMRKSVAKAKPASSGSPWYGPDRVKYLGPFSGEA 67
>emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 72.0 bits (175), Expect = 8e-11
Identities = 35/53 (66%), Positives = 37/53 (69%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKA+KL P+ SEI GEGRVTMR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYLGPFSGEA 67
>ref|XP_006356077.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Solanum tuberosum]
Length = 267
Score = 71.6 bits (174), Expect = 1e-10
Identities = 36/53 (67%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GRVTMR PWYGPDRVKYLGPFSGE+
Sbjct: 15 GKAVKLSPSSSEITGNGRVTMRKTAAKAKPASSGSPWYGPDRVKYLGPFSGES 67
>ref|XP_006356075.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform X1 [Solanum tuberosum]
Length = 267
Score = 71.6 bits (174), Expect = 1e-10
Identities = 36/53 (67%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GRVTMR PWYGPDRVKYLGPFSGE+
Sbjct: 15 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGES 67
>ref|XP_004234241.1| PREDICTED: uncharacterized protein LOC101245729 [Solanum
lycopersicum]
Length = 554
Score = 71.6 bits (174), Expect = 1e-10
Identities = 36/53 (67%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GRVTMR PWYGPDRVKYLGPFSGE+
Sbjct: 302 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGES 354
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/53 (66%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GR+TMR PWYGPDRVKYLGPFSGE+
Sbjct: 15 GKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPWYGPDRVKYLGPFSGES 67
>gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 71.6 bits (174), Expect = 1e-10
Identities = 36/53 (67%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GRVTMR PWYGPDRVKYLGPFSGE+
Sbjct: 15 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGES 67
>sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor gi|224932|prf||1204205G protein 3C,chlorophyll
binding
Length = 267
Score = 71.6 bits (174), Expect = 1e-10
Identities = 36/53 (67%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GRVTMR PWYGPDRVKYLGPFSGE+
Sbjct: 15 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGES 67
>emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b
binding protein LHCb1.1 precursor [Spinacia oleracea]
Length = 267
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKL+PSTS++ GEGR++MR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GKAVKLNPSTSDMIGEGRISMRKSAGKPKNVSSGSPWYGPDRVKYLGPFSGEA 67
>ref|XP_006356080.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Solanum tuberosum]
Length = 267
Score = 71.2 bits (173), Expect = 1e-10
Identities = 36/53 (67%), Positives = 37/53 (69%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GK VKLSPS+SEI G GRVTMR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GKTVKLSPSSSEITGNGRVTMRKSAAKAKPASFGSPWYGPDRVKYLGPFSGEA 67
>ref|XP_006356078.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Solanum tuberosum]
Length = 267
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/53 (66%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SE+ G GRVTMR PWYGPDRVKYLGPFSGE+
Sbjct: 15 GKAVKLSPSSSEVTGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGES 67
>ref|XP_006356076.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform X2 [Solanum tuberosum]
Length = 267
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/53 (66%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SE+ G GRVTMR PWYGPDRVKYLGPFSGE+
Sbjct: 15 GKAVKLSPSSSEVTGNGRVTMRKSVAKAKPASSGSPWYGPDRVKYLGPFSGES 67
>sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor gi|14240|emb|CAA32526.1| chlorophyll a/b
binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b
binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 70.9 bits (172), Expect = 2e-10
Identities = 34/53 (64%), Positives = 37/53 (69%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKL P+ SEI GEGR+TMR PWYGPDRVKYLGPFSGE+
Sbjct: 15 GKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGES 67
>emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/53 (67%), Positives = 37/53 (69%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GR TMR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GKAVKLSPSSSEITGNGRFTMRKTAAKAKPVSSGSPWYGPDRVKYLGPFSGEA 67
>ref|XP_006361530.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform X1 [Solanum tuberosum]
gi|565391644|ref|XP_006361531.1| PREDICTED: chlorophyll
a-b binding protein 3C, chloroplastic-like isoform X2
[Solanum tuberosum]
Length = 267
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/53 (67%), Positives = 37/53 (69%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G GR TMR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GKAVKLSPSSSEITGNGRFTMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEA 67
>ref|XP_004303878.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 267
Score = 70.9 bits (172), Expect = 2e-10
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
G+AV+LSP+ S IFGEGR+TMR PWYGPDRVKYLGPFSGEA
Sbjct: 15 GQAVQLSPAASNIFGEGRITMRKTGAKSKAVSSGSPWYGPDRVKYLGPFSGEA 67
>dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 70.5 bits (171), Expect = 2e-10
Identities = 35/53 (66%), Positives = 38/53 (71%)
Frame = -3
Query: 160 GKAVKLSPSTSEIFGEGRVTMRXXXXXXXXXXXXXPWYGPDRVKYLGPFSGEA 2
GKAVKLSPS+SEI G G+VTMR PWYGPDRVKYLGPFSGE+
Sbjct: 15 GKAVKLSPSSSEITGNGKVTMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGES 67