BLASTX nr result
ID: Rheum21_contig00000043
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00000043
(249 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004294267.1| PREDICTED: chlorophyll a-b binding protein 4... 63 4e-08
gb|AAA33396.1| light-harvesting chlorophyll a/b protein precurso... 60 3e-07
ref|XP_006356077.1| PREDICTED: chlorophyll a-b binding protein 3... 60 4e-07
ref|XP_006356075.1| PREDICTED: chlorophyll a-b binding protein 3... 60 4e-07
ref|XP_004234241.1| PREDICTED: uncharacterized protein LOC101245... 60 4e-07
gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum l... 60 4e-07
sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding pro... 60 4e-07
ref|XP_006356078.1| PREDICTED: chlorophyll a-b binding protein 3... 59 5e-07
ref|XP_006356073.1| PREDICTED: chlorophyll a-b binding protein 3... 59 5e-07
emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [S... 59 7e-07
gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding prot... 59 7e-07
dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein... 59 9e-07
dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein... 59 9e-07
dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein... 59 9e-07
ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, ... 59 9e-07
sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding pro... 59 9e-07
sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding pro... 59 9e-07
sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding pro... 58 1e-06
sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding pro... 58 1e-06
emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [S... 58 1e-06
>ref|XP_004294267.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 267
Score = 63.2 bits (152), Expect = 4e-08
Identities = 30/40 (75%), Positives = 31/40 (77%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
G+AVKLSPSTS LFGEGRVTMRKT SGSPWYGP
Sbjct: 15 GQAVKLSPSTSTLFGEGRVTMRKTAAKSKNVSSGSPWYGP 54
>gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/40 (67%), Positives = 31/40 (77%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKL+P+ SE+FGEGRV+MRKT SGSPWYGP
Sbjct: 14 GKAVKLAPAASEVFGEGRVSMRKTAGKPKPVSSGSPWYGP 53
>ref|XP_006356077.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Solanum tuberosum]
Length = 267
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/40 (70%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G GRVTMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEITGNGRVTMRKTAAKAKPASSGSPWYGP 54
>ref|XP_006356075.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform X1 [Solanum tuberosum]
Length = 267
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/40 (70%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G GRVTMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGP 54
>ref|XP_004234241.1| PREDICTED: uncharacterized protein LOC101245729 [Solanum
lycopersicum]
Length = 554
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/40 (70%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G GRVTMRKT SGSPWYGP
Sbjct: 302 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGP 341
Score = 59.3 bits (142), Expect = 5e-07
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G GR+TMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPWYGP 54
>gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/40 (70%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G GRVTMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGP 54
>sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor gi|224932|prf||1204205G protein 3C,chlorophyll
binding
Length = 267
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/40 (70%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G GRVTMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGP 54
>ref|XP_006356078.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Solanum tuberosum]
Length = 267
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/40 (70%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G GRVTMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEVTGNGRVTMRKTATKAKPASSGSPWYGP 54
>ref|XP_006356073.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Solanum tuberosum]
Length = 267
Score = 59.3 bits (142), Expect = 5e-07
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G GR+TMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEITGNGRITMRKTAAKAKPASSGSPWYGP 54
>emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 58.9 bits (141), Expect = 7e-07
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKA+KL P+ SE+ GEGRVTMRKT SGSPWYGP
Sbjct: 15 GKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGP 54
>gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 58.9 bits (141), Expect = 7e-07
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
G+A+KL+PS+S+L GEGRVTMRKT SGSPWYGP
Sbjct: 15 GQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGP 54
>dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G G+VTMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEITGNGKVTMRKTATKAKPVSSGSPWYGP 54
>dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
G+AVK SPS+SELFG GRV+MRKT SGSPWYGP
Sbjct: 14 GQAVKTSPSSSELFGNGRVSMRKTAAAKKAAPSGSPWYGP 53
>dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G G+VTMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSGSPWYGP 54
>ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus] gi|449525484|ref|XP_004169747.1|
PREDICTED: chlorophyll a-b binding protein,
chloroplastic-like [Cucumis sativus]
Length = 267
Score = 58.5 bits (140), Expect = 9e-07
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
G+AVKLSP+ S+L GEGR+TMRKT SGSPWYGP
Sbjct: 15 GQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGP 54
>sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor gi|19833|emb|CAA36956.1| unnamed protein
product [Nicotiana tabacum]
Length = 267
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G G+VTMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGP 54
>sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor gi|19829|emb|CAA36958.1| unnamed protein
product [Nicotiana tabacum]
Length = 267
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G G+VTMRKT SGSPWYGP
Sbjct: 15 GKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGP 54
>sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor gi|19819|emb|CAA36955.1| unnamed protein
product [Nicotiana tabacum]
Length = 266
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G G+VTMRKT SGSPWYGP
Sbjct: 14 GKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGP 53
>sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor gi|170212|gb|AAA34056.1| chlorophyll
a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKLSPS+SE+ G G+VTMRKT SGSPWYGP
Sbjct: 14 GKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGP 53
>emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b
binding protein LHCb1.1 precursor [Spinacia oleracea]
Length = 267
Score = 58.2 bits (139), Expect = 1e-06
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +1
Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
GKAVKL+PSTS++ GEGR++MRK+ SGSPWYGP
Sbjct: 15 GKAVKLNPSTSDMIGEGRISMRKSAGKPKNVSSGSPWYGP 54