BLASTX nr result

ID: Rheum21_contig00000043 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00000043
         (249 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004294267.1| PREDICTED: chlorophyll a-b binding protein 4...    63   4e-08
gb|AAA33396.1| light-harvesting chlorophyll a/b protein precurso...    60   3e-07
ref|XP_006356077.1| PREDICTED: chlorophyll a-b binding protein 3...    60   4e-07
ref|XP_006356075.1| PREDICTED: chlorophyll a-b binding protein 3...    60   4e-07
ref|XP_004234241.1| PREDICTED: uncharacterized protein LOC101245...    60   4e-07
gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum l...    60   4e-07
sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding pro...    60   4e-07
ref|XP_006356078.1| PREDICTED: chlorophyll a-b binding protein 3...    59   5e-07
ref|XP_006356073.1| PREDICTED: chlorophyll a-b binding protein 3...    59   5e-07
emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [S...    59   7e-07
gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding prot...    59   7e-07
dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein...    59   9e-07
dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein...    59   9e-07
dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein...    59   9e-07
ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, ...    59   9e-07
sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding pro...    59   9e-07
sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding pro...    59   9e-07
sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding pro...    58   1e-06
sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding pro...    58   1e-06
emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [S...    58   1e-06

>ref|XP_004294267.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
           [Fragaria vesca subsp. vesca]
          Length = 267

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 30/40 (75%), Positives = 31/40 (77%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           G+AVKLSPSTS LFGEGRVTMRKT        SGSPWYGP
Sbjct: 15  GQAVKLSPSTSTLFGEGRVTMRKTAAKSKNVSSGSPWYGP 54


>gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
          Length = 266

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 27/40 (67%), Positives = 31/40 (77%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKL+P+ SE+FGEGRV+MRKT        SGSPWYGP
Sbjct: 14  GKAVKLAPAASEVFGEGRVSMRKTAGKPKPVSSGSPWYGP 53


>ref|XP_006356077.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
           [Solanum tuberosum]
          Length = 267

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/40 (70%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G GRVTMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEITGNGRVTMRKTAAKAKPASSGSPWYGP 54


>ref|XP_006356075.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
           isoform X1 [Solanum tuberosum]
          Length = 267

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/40 (70%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G GRVTMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGP 54


>ref|XP_004234241.1| PREDICTED: uncharacterized protein LOC101245729 [Solanum
           lycopersicum]
          Length = 554

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/40 (70%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G GRVTMRKT        SGSPWYGP
Sbjct: 302 GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGP 341



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G GR+TMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPWYGP 54


>gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
          Length = 267

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/40 (70%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G GRVTMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGP 54


>sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
           AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
           Precursor gi|224932|prf||1204205G protein 3C,chlorophyll
           binding
          Length = 267

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/40 (70%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G GRVTMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGP 54


>ref|XP_006356078.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
           [Solanum tuberosum]
          Length = 267

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/40 (70%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G GRVTMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEVTGNGRVTMRKTATKAKPASSGSPWYGP 54


>ref|XP_006356073.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
           [Solanum tuberosum]
          Length = 267

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G GR+TMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEITGNGRITMRKTAAKAKPASSGSPWYGP 54


>emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
          Length = 267

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 26/40 (65%), Positives = 29/40 (72%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKA+KL P+ SE+ GEGRVTMRKT        SGSPWYGP
Sbjct: 15  GKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGP 54


>gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
           cathayensis]
          Length = 267

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 26/40 (65%), Positives = 31/40 (77%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           G+A+KL+PS+S+L GEGRVTMRKT        SGSPWYGP
Sbjct: 15  GQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGP 54


>dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
           sylvestris]
          Length = 267

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G G+VTMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTATKAKPVSSGSPWYGP 54


>dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
           [Lactuca sativa]
          Length = 266

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           G+AVK SPS+SELFG GRV+MRKT        SGSPWYGP
Sbjct: 14  GQAVKTSPSSSELFGNGRVSMRKTAAAKKAAPSGSPWYGP 53


>dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
           sylvestris]
          Length = 267

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G G+VTMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSGSPWYGP 54


>ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
           [Cucumis sativus] gi|449525484|ref|XP_004169747.1|
           PREDICTED: chlorophyll a-b binding protein,
           chloroplastic-like [Cucumis sativus]
          Length = 267

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           G+AVKLSP+ S+L GEGR+TMRKT        SGSPWYGP
Sbjct: 15  GQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGP 54


>sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
           AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
           Precursor gi|19833|emb|CAA36956.1| unnamed protein
           product [Nicotiana tabacum]
          Length = 267

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G G+VTMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGP 54


>sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
           AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
           Precursor gi|19829|emb|CAA36958.1| unnamed protein
           product [Nicotiana tabacum]
          Length = 267

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G G+VTMRKT        SGSPWYGP
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGP 54


>sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
           AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
           Precursor gi|19819|emb|CAA36955.1| unnamed protein
           product [Nicotiana tabacum]
          Length = 266

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G G+VTMRKT        SGSPWYGP
Sbjct: 14  GKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGP 53


>sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
           AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
           Precursor gi|170212|gb|AAA34056.1| chlorophyll
           a/b-binding protein-E [Nicotiana plumbaginifolia]
          Length = 266

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKLSPS+SE+ G G+VTMRKT        SGSPWYGP
Sbjct: 14  GKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGP 53


>emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
           gi|283549607|emb|CAX64457.1| major chlorophyll a/b
           binding protein LHCb1.1 precursor [Spinacia oleracea]
          Length = 267

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = +1

Query: 130 GKAVKLSPSTSELFGEGRVTMRKTXXXXXXXXSGSPWYGP 249
           GKAVKL+PSTS++ GEGR++MRK+        SGSPWYGP
Sbjct: 15  GKAVKLNPSTSDMIGEGRISMRKSAGKPKNVSSGSPWYGP 54


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