BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00026530
         (547 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]     270   1e-80
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]   257   3e-76
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   256   3e-76
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   256   6e-76
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   255   2e-75
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   248   3e-75
gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposo...   246   4e-73
gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposo...   238   9e-73
gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinen...   246   5e-72
gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposo...   240   3e-71
gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]   243   5e-71
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   231   2e-70
ref|XP_020421230.1| uncharacterized protein LOC18775571 [Prunus ...   239   4e-70
gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]   223   9e-70
gb|KYP33374.1| Retrovirus-related Pol polyprotein from transposo...   226   9e-70
gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposo...   228   2e-69
dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subt...   237   6e-69
emb|CAN76379.1| hypothetical protein VITISV_017862 [Vitis vinifera]   229   2e-68
dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   233   8e-68
dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subt...   233   9e-68

>emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]
          Length = 3048

 Score =  270 bits (690), Expect = 1e-80
 Identities = 125/182 (68%), Positives = 150/182 (82%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M+SNRMF+L +  QP +   C N++TED  +LWHCRYGHLSF GL+ LQQ+ MV GLPQ 
Sbjct: 423 MSSNRMFMLYALSQP-ISSTCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQF 481

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           +  SK+C+DCL GKQ R + PK+S WRA+E+LQLVH+DICGPINP+SNSKKRYL TF DD
Sbjct: 482 QPPSKLCKDCLVGKQHRSSIPKKSNWRAAEILQLVHADICGPINPISNSKKRYLLTFTDD 541

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           FSRKTWVYFL+EKSEAF +FKS+K+ VEKET S+L+CLRTDRGGEFTS EF  FC  +GI
Sbjct: 542 FSRKTWVYFLVEKSEAFAVFKSFKTYVEKETSSFLRCLRTDRGGEFTSQEFAIFCDVHGI 601

Query: 6   RR 1
           RR
Sbjct: 602 RR 603


>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
          Length = 1265

 Score =  257 bits (657), Expect = 3e-76
 Identities = 122/182 (67%), Positives = 146/182 (80%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M+SNRMF+L +  QP +   C N++TED   LWHCRYGHLSF GL+ LQQK MV GLPQL
Sbjct: 382 MSSNRMFMLHAISQP-IASTCFNAITEDIVHLWHCRYGHLSFKGLKTLQQKKMVNGLPQL 440

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           K   ++C+DCL GKQ+R +FP +STWRAS++L LVH+DI GPI P+SNSKKRYL TF DD
Sbjct: 441 KSPLRLCKDCLVGKQQRYSFPWKSTWRASQILXLVHADIXGPIKPISNSKKRYLITFTDD 500

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           FSRKTWVYFLIEKSEAF++FK +K  VEKET S+++ L TDRGGEFTS EF +FC  NGI
Sbjct: 501 FSRKTWVYFLIEKSEAFVVFKRFKIHVEKETNSFIRALXTDRGGEFTSXEFTNFCDVNGI 560

Query: 6   RR 1
           RR
Sbjct: 561 RR 562


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  256 bits (653), Expect = 3e-76
 Identities = 116/182 (63%), Positives = 144/182 (79%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M++NRMF++ + + P+    C  +++ED T LWHCRYGHLSF GL+ LQ + MVKGLP  
Sbjct: 121 MSANRMFVIRANMLPQASA-CFQTVSEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGLPDF 179

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           K SSK+C+DC+ GKQ R++ PK+S WRAS  LQL+HSDICGPI P+SNS+KRYL +FIDD
Sbjct: 180 KMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLISFIDD 239

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           +SRKTWVYFL EKS+AF  FKS+K  VEKETG Y++CLRTDRGGEFTS EF  FC  +GI
Sbjct: 240 YSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGI 299

Query: 6   RR 1
            R
Sbjct: 300 SR 301


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  256 bits (655), Expect = 6e-76
 Identities = 116/182 (63%), Positives = 145/182 (79%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M++NRMF++L+ + P+    C  +++ED T LWHCRYGHLSF GL+ LQ +NMVKGLP  
Sbjct: 400 MSANRMFVILANMLPQASA-CFQTVSEDNTHLWHCRYGHLSFKGLKTLQYRNMVKGLPDF 458

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           K  SK+C+DC+ GKQ R++ PK+S WRAS  LQL+HSDICGPI P+SN++KRYL +FIDD
Sbjct: 459 KMPSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNNRKRYLISFIDD 518

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           +SRKTWVYFL EKS+AF  FKS+K  VEKETG Y++CLRTDRGGEFTS EF  FC  +GI
Sbjct: 519 YSRKTWVYFLNEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGI 578

Query: 6   RR 1
            R
Sbjct: 579 SR 580


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  255 bits (652), Expect = 2e-75
 Identities = 116/182 (63%), Positives = 144/182 (79%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M++NRMF++ + + P+    C  +++ED T LWHCRYGHLSF GL+ LQ + MVKGLP  
Sbjct: 402 MSANRMFVIRANMLPQASA-CFQTVSEDNTHLWHCRYGHLSFKGLRSLQYRKMVKGLPDF 460

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           K SSK+C+DC+ GKQ R++ PK+S WRAS  LQL+HSDICGPI P+SNS+KRYL +FIDD
Sbjct: 461 KMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLISFIDD 520

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           +SRKTWVYFL EKS+AF  FKS+K  VEKETG Y++CLRTDRGGEFTS EF  FC  +GI
Sbjct: 521 YSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGI 580

Query: 6   RR 1
            R
Sbjct: 581 SR 582


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  248 bits (633), Expect = 3e-75
 Identities = 114/182 (62%), Positives = 141/182 (77%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           MT+NRMF+LL+ +       C+ + ++D + LWHCRY HL++ GL+ L  + MVKGLPQ+
Sbjct: 412 MTANRMFVLLANVVVTDFSTCMQASSDDLSHLWHCRYSHLNYKGLKTLHYRKMVKGLPQI 471

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           K S++VC DCL GKQ RD+ PK S WRAS+ LQLVH+DICGPI P SNS KRY+ +FIDD
Sbjct: 472 KASARVCHDCLVGKQSRDSIPKSSQWRASQRLQLVHADICGPITPTSNSDKRYVLSFIDD 531

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           FSRK WVYFL EKS+AF MFK YKS VEKE G  + CLRTDRGGEFTS+EF +FC+ NGI
Sbjct: 532 FSRKMWVYFLTEKSQAFTMFKRYKSLVEKEIGFPICCLRTDRGGEFTSNEFNEFCQSNGI 591

Query: 6   RR 1
           +R
Sbjct: 592 KR 593


>gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 930

 Score =  246 bits (628), Expect = 4e-73
 Identities = 121/182 (66%), Positives = 143/182 (78%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M+SNRMFIL +   P V   C N++TED  +LWHCR+GHLSF GLQ LQQK MV+GL  L
Sbjct: 378 MSSNRMFILHAISLP-VAPTCFNTVTEDVAQLWHCRFGHLSFKGLQTLQQKGMVEGLAML 436

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           K  SK+C+D L GKQ RD+FP +S+WRAS++LQLVH+DICGPI P+SNSKKRYL TFIDD
Sbjct: 437 KPPSKLCKDYLIGKQHRDSFPMKSSWRASQILQLVHADICGPIKPVSNSKKRYLLTFIDD 496

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           FSRKTWVYFL EKSEAF +FKS+K  VEK T   LK LRTD GGEFTS EF +F   +G+
Sbjct: 497 FSRKTWVYFLAEKSEAFTVFKSFKLHVEKATNMSLKGLRTDLGGEFTSREFNNFFHAHGV 556

Query: 6   RR 1
           +R
Sbjct: 557 QR 558


>gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 560

 Score =  238 bits (607), Expect = 9e-73
 Identities = 109/182 (59%), Positives = 139/182 (76%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           MT+NRMF+L +   P+ +  CL++  ++   LWHCRYGHLS  GL+ LQ K MV GLP L
Sbjct: 371 MTTNRMFVLTAVPMPQ-KPTCLHTTVQEIAHLWHCRYGHLSHKGLRTLQYKKMVHGLPPL 429

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           K  + VC  C+ GKQ RD  PK++ WRA++ LQL+H+DICGPI+P SNSKKRYL  FIDD
Sbjct: 430 KSPTDVCTVCMIGKQHRDPIPKKANWRATQKLQLIHADICGPISPTSNSKKRYLICFIDD 489

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           F+ KTW+YF++EKSEA ++FK YK+ VEKE+G  +KCLRTD+GGEF S EF DFCKE GI
Sbjct: 490 FTMKTWIYFMVEKSEALVIFKHYKNYVEKESGCSIKCLRTDQGGEFVSLEFNDFCKEQGI 549

Query: 6   RR 1
           +R
Sbjct: 550 KR 551


>gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1363

 Score =  246 bits (627), Expect = 5e-72
 Identities = 115/186 (61%), Positives = 142/186 (76%), Gaps = 4/186 (2%)
 Frame = -2

Query: 546  MTSNRMFILLSKIQPKV----EEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKG 379
            MT+NRMF+L+++I+P +    +EIC N+ T+D T LWHCR GH+S  GLQ LQ+K MV G
Sbjct: 458  MTANRMFVLVARIEPTLSDSNQEICFNTTTQDLTHLWHCRLGHISNTGLQTLQRKKMVHG 517

Query: 378  LPQLKDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFT 199
            LPQL     VC DCLKGKQ R+  PK STWRA++ L+L+H+D+CGPI+P+SNS K+Y+  
Sbjct: 518  LPQLPALDVVCVDCLKGKQHREPIPKRSTWRATQRLELIHADLCGPISPISNSGKKYVLC 577

Query: 198  FIDDFSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCK 19
             IDD+SRK W YFL EKSE F +FK +K  VEKET   +KCLRTDRGGEFTS EF  FCK
Sbjct: 578  LIDDYSRKAWSYFLNEKSETFAVFKFFKILVEKETSLAIKCLRTDRGGEFTSAEFNSFCK 637

Query: 18   ENGIRR 1
            ENGIRR
Sbjct: 638  ENGIRR 643


>gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 884

 Score =  240 bits (613), Expect = 3e-71
 Identities = 112/182 (61%), Positives = 141/182 (77%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           MT+NRMF +   IQ  +++ C ++  +D T LWH RYGHLSF GL+ L +KNMV+GLP++
Sbjct: 379 MTANRMFPM--HIQYDIQK-CFSTRVQDPTWLWHLRYGHLSFKGLKTLHEKNMVEGLPKI 435

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
              +++CEDC+ GKQ RD+FP    WRA ++LQLVHSDICGPINP SN  KRY   FIDD
Sbjct: 436 NCPTEICEDCIVGKQHRDSFPHGKAWRAQQILQLVHSDICGPINPTSNGNKRYFIIFIDD 495

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
            SRKTWVYFL EKSEAF++FKS+KSRVEKE+G Y++ LRTDRGGEF SH F  FC+ +GI
Sbjct: 496 HSRKTWVYFLQEKSEAFLIFKSFKSRVEKESGKYIQILRTDRGGEFNSHNFASFCELHGI 555

Query: 6   RR 1
           +R
Sbjct: 556 QR 557


>gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]
          Length = 1321

 Score =  243 bits (619), Expect = 5e-71
 Identities = 115/182 (63%), Positives = 141/182 (77%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M+ NRMF L  K +    + CL +   D + LWH R+GHL+FNGL++LQQK MVKGLPQ+
Sbjct: 403 MSGNRMFQL--KPESFDNQTCLKASISDPSWLWHYRFGHLNFNGLRVLQQKEMVKGLPQI 460

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           +  S VCE+CL  KQ R++FP+ESTWRAS VLQLVHSDICGP+NP SNS KRY  TF DD
Sbjct: 461 ETPSHVCEECLIAKQHRNSFPQESTWRASHVLQLVHSDICGPMNPTSNSNKRYFITFTDD 520

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           FSRKTWVYFL EKSEA  MF+ +K+RVEKE    ++CLRTDRGGE+TS EF++ C+ NGI
Sbjct: 521 FSRKTWVYFLKEKSEALEMFRKFKARVEKEKNQPIQCLRTDRGGEYTSSEFVNLCESNGI 580

Query: 6   RR 1
           +R
Sbjct: 581 KR 582


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  231 bits (590), Expect = 2e-70
 Identities = 109/183 (59%), Positives = 139/183 (75%), Gaps = 1/183 (0%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQ- 370
           MT+NRMFIL ++   K ++ C +  T+D + LWH RY HLS  GL+ILQ K MV+GLP  
Sbjct: 94  MTTNRMFILFAQSATK-KDSCFHISTQDLSSLWHRRYAHLSHKGLRILQSKGMVRGLPSS 152

Query: 369 LKDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFID 190
           L  + KVCEDC+KGKQ RD  PK+S WRA + L+L+H+DICGPI P SNS+KRY   FID
Sbjct: 153 LSTTEKVCEDCMKGKQHRDPIPKKSQWRAKQKLELIHADICGPIIPSSNSQKRYFLCFID 212

Query: 189 DFSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENG 10
           D++RK W+YFL EKSEAF  F+ +K+ VEKE+G  +KCLRTDRGGEFTS EF +FC++ G
Sbjct: 213 DYTRKAWIYFLTEKSEAFHYFQCFKNLVEKESGLMIKCLRTDRGGEFTSSEFNEFCQKTG 272

Query: 9   IRR 1
           I+R
Sbjct: 273 IKR 275


>ref|XP_020421230.1| uncharacterized protein LOC18775571 [Prunus persica]
          Length = 1135

 Score =  239 bits (611), Expect = 4e-70
 Identities = 111/181 (61%), Positives = 142/181 (78%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           MT+NRMF L   IQ   ++ CL++  +D T LWH RYGHLSF GL+ L +KNM++GLP++
Sbjct: 340 MTTNRMFPL--HIQYDAQK-CLSTRVQDPTWLWHLRYGHLSFKGLKTLHEKNMMEGLPKI 396

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
              +++CEDC+ GKQ RD+FP+   WRA ++LQLVHSDICGPINP SN  KRY  TFIDD
Sbjct: 397 NCPTEMCEDCIVGKQHRDSFPQGKAWRAEQILQLVHSDICGPINPTSNGNKRYFITFIDD 456

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           +SRKTW+YFL EKSEAF++FKS+K+RVEKE+G Y++ LRTD GGEF SH F  FC+ +GI
Sbjct: 457 YSRKTWIYFLQEKSEAFVVFKSFKARVEKESGKYIQILRTDSGGEFNSHNFASFCELHGI 516

Query: 6   R 4
           R
Sbjct: 517 R 517


>gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 298

 Score =  223 bits (567), Expect = 9e-70
 Identities = 105/182 (57%), Positives = 132/182 (72%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           MT+NRM++LL+   P +   CL +  ED   +WHCRYGHL+F GL  L ++ MVKGLP L
Sbjct: 68  MTANRMYVLLA---PVMMPQCLVAKHEDIEHIWHCRYGHLNFKGLVTLAKRTMVKGLPIL 124

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           KDS+++C DC+  K  RD+ PK ++WRAS  L+L+HSDICGPINP SN   RY  TF DD
Sbjct: 125 KDSAELCPDCVISKHHRDSIPKTASWRASSKLELIHSDICGPINPSSNGGCRYFITFTDD 184

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           FSRKTW Y L  KS AF +F+ +K+ VEKE    +KCLRTDRGGEFTS +F DFC E+GI
Sbjct: 185 FSRKTWTYPLKNKSSAFEVFRKFKALVEKELDHQIKCLRTDRGGEFTSSQFNDFCSEHGI 244

Query: 6   RR 1
           +R
Sbjct: 245 KR 246


>gb|KYP33374.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 421

 Score =  226 bits (577), Expect = 9e-70
 Identities = 105/170 (61%), Positives = 131/170 (77%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           +++NRM+ LL    P  +  C +S+T+D+  LWHCRYGHLSF GL  L Q+ MV GLP +
Sbjct: 235 ISANRMY-LLHVSSPPAKSTCFHSVTKDKMHLWHCRYGHLSFQGLNTLYQQYMVYGLPMM 293

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           K  + +C+DCL GKQ RD+FPK+S WRA++VLQL+H+DICGPI P+SNSKKRYL TFIDD
Sbjct: 294 KAPTNLCQDCLIGKQSRDSFPKKSNWRATQVLQLIHADICGPITPISNSKKRYLLTFIDD 353

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHE 37
           FSRKTW+YFLI KSEA  +FK +K  VEKE  S ++ LRTDRGGEFT  E
Sbjct: 354 FSRKTWIYFLIAKSEALSIFKIFKVHVEKEANSLIRSLRTDRGGEFTLQE 403


>gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 508

 Score =  228 bits (581), Expect = 2e-69
 Identities = 106/182 (58%), Positives = 133/182 (73%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M +NRMF + +K+    E  C+ +   D T +WH RYGHLS+ GL++L QK MVKGLP+L
Sbjct: 65  MANNRMFPIKAKLVI-TEAACIQTSNVDSTEMWHKRYGHLSYGGLKLLNQKAMVKGLPEL 123

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           K+  KVC +C  GKQ RDA  K+STWRA+  L+L+HSDICGP  P SNS +RY  TFIDD
Sbjct: 124 KEMDKVCPECAVGKQHRDAISKQSTWRATRRLELIHSDICGPSTPTSNSNRRYFITFIDD 183

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           FSRKTWV+FL EK+EAF  FK ++  VEKE+   + CLRTDRGGEF S++F +FC  NGI
Sbjct: 184 FSRKTWVFFLCEKAEAFETFKRFRLMVEKESNCVISCLRTDRGGEFNSNDFNEFCTMNGI 243

Query: 6   RR 1
           RR
Sbjct: 244 RR 245


>dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subterraneum]
          Length = 1302

 Score =  237 bits (604), Expect = 6e-69
 Identities = 107/182 (58%), Positives = 141/182 (77%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M SN++F ++++     +++CL + TED T+LWHCRYGHL+  GLQ LQQKNMV GLP+ 
Sbjct: 397 MASNKLFPIMAE----AKQVCLQANTEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKF 452

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           ++S+ VC DCL+GKQ R++ PK S W++S+ L+L+HSDICGPI P+SNS KRY+ TFIDD
Sbjct: 453 EESNHVCADCLRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFIDD 512

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           +SRK WVY+L  KS+AF  FK +K  VEKET   + CLRTDRGGEF S EF +FC+ NGI
Sbjct: 513 YSRKIWVYYLSNKSDAFECFKKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGI 572

Query: 6   RR 1
           +R
Sbjct: 573 KR 574


>emb|CAN76379.1| hypothetical protein VITISV_017862 [Vitis vinifera]
          Length = 639

 Score =  229 bits (583), Expect = 2e-68
 Identities = 102/162 (62%), Positives = 125/162 (77%)
 Frame = -2

Query: 486 CLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQLKDSSKVCEDCLKGKQRRDAF 307
           C ++  ED + LW+CRYGHLS  GL+ LQ   MV GLPQ + S  VC DC+ G Q R+  
Sbjct: 404 CFHTTIEDLSHLWYCRYGHLSHKGLRTLQNNKMVNGLPQFEASKTVCTDCMVGTQHRNPI 463

Query: 306 PKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDDFSRKTWVYFLIEKSEAFMMF 127
           PK+STWRA   LQL+H+DICGPI P+ NSKKRYL +FIDDFSRK W+Y L+EKS+A ++F
Sbjct: 464 PKKSTWRACSKLQLIHADICGPITPILNSKKRYLISFIDDFSRKAWIYLLVEKSKALVIF 523

Query: 126 KSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGIRR 1
           K YKS VEKET SY+KCLR +RGGEFTS +F +FCKENGI+R
Sbjct: 524 KQYKSCVEKETSSYIKCLRINRGGEFTSQDFNEFCKENGIKR 565


>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  233 bits (594), Expect = 8e-68
 Identities = 105/182 (57%), Positives = 139/182 (76%)
 Frame = -2

Query: 546 MTSNRMFILLSKIQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGLPQL 367
           M SN++F ++++     +++CL +  ED T+LWHCRYGHL+  GLQ LQQKNMV GLP+ 
Sbjct: 397 MASNKLFPIMAE----AKQVCLQANIEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKF 452

Query: 366 KDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTFIDD 187
           ++S+ VC DCL+GKQ R++ PK S W++S+ L+L+HSDICGPI P+SNS KRY+ TFIDD
Sbjct: 453 EESNHVCADCLRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFIDD 512

Query: 186 FSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKENGI 7
           +SRK W Y+L  KS+AF  FK +K  VEKET   + CLRTDRGGEF S EF +FC+ NGI
Sbjct: 513 YSRKIWAYYLSNKSDAFECFKKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGI 572

Query: 6   RR 1
           +R
Sbjct: 573 KR 574


>dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  233 bits (595), Expect = 9e-68
 Identities = 111/185 (60%), Positives = 135/185 (72%), Gaps = 3/185 (1%)
 Frame = -2

Query: 546 MTSNRMFILLSK---IQPKVEEICLNSLTEDQTRLWHCRYGHLSFNGLQILQQKNMVKGL 376
           MT+NRMF+LLS    I+ + +E C    T+D   LWH R+GHLS+ GL+ LQ KNMV+GL
Sbjct: 398 MTANRMFVLLSSTQSIKKENKEECFQVTTDDVAHLWHRRFGHLSYKGLKTLQTKNMVRGL 457

Query: 375 PQLKDSSKVCEDCLKGKQRRDAFPKESTWRASEVLQLVHSDICGPINPMSNSKKRYLFTF 196
           P       VC +CLKGKQ RD   + STWRASE L+LVH+DICGPI+P S   KRY   F
Sbjct: 458 PSFSVGEIVCTNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICF 517

Query: 195 IDDFSRKTWVYFLIEKSEAFMMFKSYKSRVEKETGSYLKCLRTDRGGEFTSHEFMDFCKE 16
           IDD+SRK WVYFL  KS+AF  FK +K+ VEKETG  +KCLRTDRGGEFTS+EF ++CK 
Sbjct: 518 IDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKM 577

Query: 15  NGIRR 1
           NGI+R
Sbjct: 578 NGIKR 582