BLASTX nr result

ID: Rehmannia32_contig00026260 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00026260
         (369 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OIS99663.1| hypothetical protein A4A49_09365 [Nicotiana atten...    48   1e-10

>gb|OIS99663.1| hypothetical protein A4A49_09365 [Nicotiana attenuata]
          Length = 509

 Score = 47.8 bits (112), Expect(2) = 1e-10
 Identities = 24/50 (48%), Positives = 27/50 (54%)
 Frame = +2

Query: 218 LNESSFGEAYXXXXXXXXXXXXXXPARPSYMGNSYNSYEGHTQNRGGMRT 367
           L  SSF EAY              PARP+YM NSY SY+GH Q RG  R+
Sbjct: 287 LTHSSFDEAYGNDGARGRSSQSKSPARPAYMSNSYYSYDGHGQGRGIYRS 336



 Score = 45.8 bits (107), Expect(2) = 1e-10
 Identities = 28/74 (37%), Positives = 37/74 (50%)
 Frame = +3

Query: 6   RARGKFLGSSVMFDSDITFVVVLN*KGWSPKMNFFIESISSLVCPRWIH*ADLRLCHDKA 185
           +ARGKF  SS++FDSD+TF+V+L                                CH KA
Sbjct: 249 QARGKFF-SSILFDSDVTFLVIL--------------------------------CHVKA 275

Query: 186 ATILRDLEWKCLTN 227
           A I+R L+WKCLT+
Sbjct: 276 AIIVRVLQWKCLTH 289


Top