BLASTX nr result

ID: Rehmannia32_contig00025173 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00025173
         (384 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_022871882.1| collagen alpha-2(IV) chain-like [Olea europa...    56   4e-07

>ref|XP_022871882.1| collagen alpha-2(IV) chain-like [Olea europaea var. sylvestris]
          Length = 169

 Score = 56.2 bits (134), Expect = 4e-07
 Identities = 31/55 (56%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
 Frame = -1

Query: 243 IDQTYLEGGGE--SKLGMEGILGMEGIFGSPVGSEGIGGIENFGMPGIVGIVGNV 85
           +   YLEGGG+    +GMEGILGMEG       +EGIGG E  GMPG+ GIVG V
Sbjct: 82  LPMVYLEGGGDRTGMVGMEGILGMEG-------NEGIGGNETLGMPGMAGIVGCV 129


Top