BLASTX nr result
ID: Rehmannia32_contig00024826
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia32_contig00024826
(620 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009424774.1| RNA polymerase beta'' subunit (chloroplast) ... 86 6e-16
gb|KHG12104.1| DNA-directed RNA polymerase subunit beta'' [Gossy... 80 1e-15
gb|AFS35535.1| RNA polymerase beta subunit, partial (plastid) [F... 80 2e-15
emb|CAP11904.1| RNA polymerase beta subunit, partial (chloroplas... 80 2e-15
emb|CAP11916.1| RNA polymerase beta subunit, partial (chloroplas... 80 3e-15
ref|YP_358566.2| RNA polymerase beta'' subunit [Phalaenopsis aph... 84 3e-15
ref|YP_009444292.1| RNA polymerase beta'' subunit (chloroplast) ... 84 3e-15
ref|YP_009424701.1| RNA polymerase beta'' subunit (chloroplast) ... 84 3e-15
sp|Q3BAQ2.1|RPOC2_PHAAO RecName: Full=DNA-directed RNA polymeras... 84 3e-15
ref|YP_009107553.1| RNA polymerase beta' subunit (chloroplast) [... 84 3e-15
ref|YP_006073258.1| RNA polymerase beta'' subunit (chloroplast) ... 84 3e-15
emb|CAP11909.1| RNA polymerase beta subunit, partial (chloroplas... 80 3e-15
emb|CAP11908.1| RNA polymerase beta subunit, partial (chloroplas... 80 3e-15
ref|YP_009424848.1| RNA polymerase beta'' subunit (chloroplast) ... 84 4e-15
ref|YP_009424627.1| RNA polymerase beta'' subunit (chloroplast) ... 84 4e-15
ref|YP_009027960.1| RNA polymerase beta subunit (chloroplast) (c... 84 5e-15
gb|AFU94782.1| RpoC2, partial (chloroplast) [Chrysobalanus icaco] 84 5e-15
ref|YP_009108918.1| RNA polymerase beta' subunit (plastid) [Cora... 83 7e-15
emb|CAP11906.1| RNA polymerase beta subunit, partial (chloroplas... 79 7e-15
emb|CAP11921.1| RNA polymerase beta subunit, partial (chloroplas... 80 7e-15
>ref|YP_009424774.1| RNA polymerase beta'' subunit (chloroplast) [Oberonia japonica]
gb|ASU93303.1| RNA polymerase beta'' subunit (chloroplast) [Oberonia japonica]
Length = 1382
Score = 86.3 bits (212), Expect = 6e-16
Identities = 43/54 (79%), Positives = 46/54 (85%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP +R D+GL +P
Sbjct: 319 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPANGKIRFDEGLVQP 372
>gb|KHG12104.1| DNA-directed RNA polymerase subunit beta'' [Gossypium arboreum]
Length = 130
Score = 80.1 bits (196), Expect = 1e-15
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP 61
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP
Sbjct: 40 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAP 79
>gb|AFS35535.1| RNA polymerase beta subunit, partial (plastid) [Fragaria moschata]
Length = 156
Score = 80.1 bits (196), Expect = 2e-15
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP 61
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP
Sbjct: 17 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAP 56
>emb|CAP11904.1| RNA polymerase beta subunit, partial (chloroplast) [Acorus calamus]
emb|CAP11905.1| RNA polymerase beta subunit, partial (chloroplast) [Acorus
gramineus]
Length = 161
Score = 80.1 bits (196), Expect = 2e-15
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP 61
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP
Sbjct: 73 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAP 112
>emb|CAP11916.1| RNA polymerase beta subunit, partial (chloroplast) [Hieracium
leyianum]
emb|CAP11917.1| RNA polymerase beta subunit, partial (chloroplast) [Hieracium
pellucidum]
Length = 170
Score = 80.1 bits (196), Expect = 3e-15
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP 61
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP
Sbjct: 74 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAP 113
>ref|YP_358566.2| RNA polymerase beta'' subunit [Phalaenopsis aphrodite subsp.
formosana]
Length = 1384
Score = 84.3 bits (207), Expect = 3e-15
Identities = 42/54 (77%), Positives = 45/54 (83%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP ++ D+GL P
Sbjct: 315 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFDEGLVHP 368
>ref|YP_009444292.1| RNA polymerase beta'' subunit (chloroplast) [Neofinetia falcata]
ref|YP_009444366.1| RNA polymerase beta'' subunit (chloroplast) [Neofinetia
richardsiana]
gb|ANG07760.1| RNA polymerase beta'' subunit (chloroplast) [Neofinetia falcata]
gb|ANG07834.1| RNA polymerase beta'' subunit (chloroplast) [Neofinetia
richardsiana]
gb|ANG07908.1| RNA polymerase beta'' subunit (chloroplast) [Neofinetia falcata]
Length = 1385
Score = 84.3 bits (207), Expect = 3e-15
Identities = 42/54 (77%), Positives = 45/54 (83%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP ++ D+GL P
Sbjct: 319 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFDEGLVHP 372
>ref|YP_009424701.1| RNA polymerase beta'' subunit (chloroplast) [Thrixspermum
japonicum]
gb|ASU93230.1| RNA polymerase beta'' subunit (chloroplast) [Thrixspermum
japonicum]
Length = 1385
Score = 84.3 bits (207), Expect = 3e-15
Identities = 42/54 (77%), Positives = 45/54 (83%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP ++ D+GL P
Sbjct: 319 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFDEGLVHP 372
>sp|Q3BAQ2.1|RPOC2_PHAAO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gb|AAW82493.1| RNA polymerase beta'' chain (chloroplast) [Phalaenopsis aphrodite
subsp. formosana]
Length = 1388
Score = 84.3 bits (207), Expect = 3e-15
Identities = 42/54 (77%), Positives = 45/54 (83%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP ++ D+GL P
Sbjct: 319 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFDEGLVHP 372
>ref|YP_009107553.1| RNA polymerase beta' subunit (chloroplast) [Phalaenopsis hybrid
cultivar]
gb|AIU44761.1| RNA polymerase beta' subunit (chloroplast) [Phalaenopsis hybrid
cultivar]
Length = 1388
Score = 84.3 bits (207), Expect = 3e-15
Identities = 42/54 (77%), Positives = 45/54 (83%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP ++ D+GL P
Sbjct: 319 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFDEGLVHP 372
>ref|YP_006073258.1| RNA polymerase beta'' subunit (chloroplast) [Phalaenopsis
equestris]
gb|AEB96313.1| RNA polymerase beta'' subunit (chloroplast) [Phalaenopsis
equestris]
Length = 1388
Score = 84.3 bits (207), Expect = 3e-15
Identities = 42/54 (77%), Positives = 45/54 (83%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP ++ D+GL P
Sbjct: 319 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFDEGLVHP 372
>emb|CAP11909.1| RNA polymerase beta subunit, partial (chloroplast) [Begonia
plagioneura]
Length = 159
Score = 79.7 bits (195), Expect = 3e-15
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP 61
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEH+RAP
Sbjct: 73 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP 112
>emb|CAP11908.1| RNA polymerase beta subunit, partial (chloroplast) [Begonia
conchifolia]
Length = 159
Score = 79.7 bits (195), Expect = 3e-15
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP 61
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEH+RAP
Sbjct: 73 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP 112
>ref|YP_009424848.1| RNA polymerase beta'' subunit (chloroplast) [Gastrochilus
japonicus]
gb|ASU93377.1| RNA polymerase beta'' subunit (chloroplast) [Gastrochilus
japonicus]
Length = 1385
Score = 84.0 bits (206), Expect = 4e-15
Identities = 41/54 (75%), Positives = 45/54 (83%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEH+RAP ++ D+GL P
Sbjct: 319 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGRIKFDEGLVHP 372
>ref|YP_009424627.1| RNA polymerase beta'' subunit (chloroplast) [Gastrochilus
fuscopunctatus]
gb|ASU93156.1| RNA polymerase beta'' subunit (chloroplast) [Gastrochilus
fuscopunctatus]
Length = 1385
Score = 84.0 bits (206), Expect = 4e-15
Identities = 41/54 (75%), Positives = 45/54 (83%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEH+RAP ++ D+GL P
Sbjct: 319 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGRIKFDEGLVHP 372
>ref|YP_009027960.1| RNA polymerase beta subunit (chloroplast) (chloroplast)
[Chrysobalanus icaco]
gb|AHX80693.1| RNA polymerase beta subunit (chloroplast) [Chrysobalanus icaco]
Length = 1380
Score = 83.6 bits (205), Expect = 5e-15
Identities = 42/58 (72%), Positives = 47/58 (81%), Gaps = 4/58 (6%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEPQPIK 19
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP ++ ++GL P I+
Sbjct: 316 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEGLVHPTRIR 373
>gb|AFU94782.1| RpoC2, partial (chloroplast) [Chrysobalanus icaco]
Length = 1630
Score = 83.6 bits (205), Expect = 5e-15
Identities = 42/58 (72%), Positives = 47/58 (81%), Gaps = 4/58 (6%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEPQPIK 19
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP ++ ++GL P I+
Sbjct: 331 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEGLVHPTRIR 388
>ref|YP_009108918.1| RNA polymerase beta' subunit (plastid) [Corallorhiza bulbosa]
gb|AIW51197.1| RNA polymerase beta' subunit (plastid) [Corallorhiza bulbosa]
Length = 1383
Score = 83.2 bits (204), Expect = 7e-15
Identities = 42/54 (77%), Positives = 44/54 (81%), Gaps = 4/54 (7%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP----VRRDQGLYEP 31
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP +R D+ L P
Sbjct: 315 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIRFDENLVHP 368
>emb|CAP11906.1| RNA polymerase beta subunit, partial (chloroplast) [Aglaia
korthalsii]
emb|CAP11907.1| RNA polymerase beta subunit, partial (chloroplast) [Aglaia
odoratissima]
Length = 169
Score = 79.0 bits (193), Expect = 7e-15
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP 61
EAVGII+GQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP
Sbjct: 74 EAVGIISGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAP 113
>emb|CAP11921.1| RNA polymerase beta subunit, partial (chloroplast) [Sophora
toromiro]
Length = 221
Score = 80.1 bits (196), Expect = 7e-15
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = -3
Query: 180 EAVGIIAGQSIGEPGTQLTLRTFHAGGVFMGGTAEHVRAP 61
EAVGIIAGQSIGEPGTQLTLRTFH GGVF GGTAEHVRAP
Sbjct: 133 EAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAP 172