BLASTX nr result
ID: Rehmannia32_contig00024152
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia32_contig00024152
(836 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|OMO90520.1| reverse transcriptase [Corchorus capsularis] 71 3e-17
gb|OMO54692.1| reverse transcriptase [Corchorus capsularis] 69 5e-17
gb|OMO57964.1| reverse transcriptase [Corchorus capsularis] 73 2e-16
gb|OMO54874.1| reverse transcriptase [Corchorus capsularis] 66 7e-16
gb|OMO96399.1| reverse transcriptase [Corchorus capsularis] 68 7e-16
gb|OMO90460.1| putative ribonuclease H protein [Corchorus capsul... 68 9e-16
gb|OMO67876.1| reverse transcriptase [Corchorus capsularis] 64 2e-15
gb|OMO70912.1| reverse transcriptase [Corchorus capsularis] 62 3e-15
gb|OMO91484.1| reverse transcriptase [Corchorus capsularis] 58 4e-15
gb|OMO64639.1| reverse transcriptase [Corchorus capsularis] 59 1e-12
gb|OMO96348.1| reverse transcriptase [Corchorus capsularis] 61 2e-12
gb|AAR07121.1| NdhC, partial (chloroplast) [Acmella radicans] >g... 71 3e-12
gb|OTG29063.1| putative NADH:ubiquinone/plastoquinone oxidoreduc... 72 3e-12
gb|AFU94035.1| NdhC, partial (chloroplast) [Medusagyne oppositif... 72 4e-12
gb|ALI89793.1| NdhC, partial (chloroplast) [Phytocrene racemosa] 70 4e-12
gb|ALI89792.1| NdhC, partial (chloroplast) [Phytocrene borneensis] 70 4e-12
gb|AFS89605.1| NADH-plastoquinone oxidoreductase subunit 3, part... 70 4e-12
gb|AAR07162.1| NdhC, partial (chloroplast) [Dahlia coccinea] 70 4e-12
gb|AAR07202.1| NdhC, partial (chloroplast) [Galeana pratensis] 70 4e-12
gb|AAR07333.1| NdhC, partial (chloroplast) [Tetragonotheca repanda] 70 4e-12
>gb|OMO90520.1| reverse transcriptase [Corchorus capsularis]
Length = 2372
Score = 70.9 bits (172), Expect(2) = 3e-17
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYG 264
RI + Q W GK +S AGKA++IQ+ AQ+IP MSCF+ P TFL DLNM IA FW+G
Sbjct: 1124 RIWKRVQQWRGKILSGAGKAVMIQAVAQSIPTYLMSCFRFPKTFLNDLNMIIANFWWG 1181
Score = 46.6 bits (109), Expect(2) = 3e-17
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKS---VLRRIKEGLYQKI 419
I+ S NTP IR IM+ L V +V+D+ KYLGLP+ G+S L+ I++ +++++
Sbjct: 1074 ILFSNNTPDCIRVSIMAKLGVQQVLDKNKYLGLPIMIGRSKRAELQMIRDRIWKRV 1129
>gb|OMO54692.1| reverse transcriptase [Corchorus capsularis]
Length = 1036
Score = 68.6 bits (166), Expect(2) = 5e-17
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYG 264
R+ S+ W GK +S AGKA++IQS AQ+IP+ MSCF+ P +F+ +LNM IA+FW+G
Sbjct: 494 RLWSRVNTWKGKLLSIAGKAVMIQSIAQSIPLYLMSCFQFPKSFIHELNMVIADFWWG 551
Score = 48.1 bits (113), Expect(2) = 5e-17
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKS---VLRRIKEGLYQKIN 416
IM S NT +R IM L V K+M+ ++YLGLP+ G+S LR IK+ L+ ++N
Sbjct: 444 IMFSYNTTSGLRDSIMQRLGVEKIMENDRYLGLPIMIGRSRTRELRLIKDRLWSRVN 500
>gb|OMO57964.1| reverse transcriptase [Corchorus capsularis]
Length = 1620
Score = 72.8 bits (177), Expect(2) = 2e-16
Identities = 34/58 (58%), Positives = 43/58 (74%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYG 264
R++ + Q W GK +S AGKA+LIQ+ AQAIP MSCFK P TFL +LNM +A FW+G
Sbjct: 1094 RLIKRVQGWQGKLLSIAGKAVLIQAVAQAIPTYLMSCFKFPKTFLHELNMVMARFWWG 1151
Score = 42.0 bits (97), Expect(2) = 2e-16
Identities = 17/40 (42%), Positives = 29/40 (72%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKS 458
I+ S NT ++R IM+ L V +++DR+KYLG+P+ G++
Sbjct: 1044 ILFSKNTLEDLRSMIMNYLGVQRILDRDKYLGMPILIGRA 1083
>gb|OMO54874.1| reverse transcriptase [Corchorus capsularis]
Length = 1515
Score = 65.9 bits (159), Expect(2) = 7e-16
Identities = 31/62 (50%), Positives = 42/62 (67%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYGIY 258
R+ + Q W G+ +S A KA++IQ+ AQ IP MSCFK P +FL +LNM IA FW+G
Sbjct: 1024 RLWKRIQSWSGRLLSIASKAVMIQAVAQVIPTYLMSCFKFPKSFLHELNMLIARFWWGST 1083
Query: 257 ET 252
+T
Sbjct: 1084 DT 1085
Score = 47.0 bits (110), Expect(2) = 7e-16
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKS---VLRRIKEGLYQKI 419
++ S NTP ++R I L V K++ R+KYLG+P+ GKS L IK+ L+++I
Sbjct: 974 VLFSKNTPEDLRKAIQHHLGVQKILSRDKYLGMPIMIGKSKRAELEVIKDRLWKRI 1029
>gb|OMO96399.1| reverse transcriptase [Corchorus capsularis]
Length = 1446
Score = 67.8 bits (164), Expect(2) = 7e-16
Identities = 32/58 (55%), Positives = 42/58 (72%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYG 264
R+ + + W GK +S AGKA++IQS AQAIP SCF+ P TFL +LNM IA+FW+G
Sbjct: 708 RLWKQLRSWSGKLLSIAGKAVMIQSIAQAIPTYLRSCFRFPKTFLYELNMLIAKFWWG 765
Score = 45.1 bits (105), Expect(2) = 7e-16
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKS---VLRRIKEGLYQKI 419
+M S NTP +++ IM L + KV+DR++YLGLP+ G+S IK+ L++++
Sbjct: 658 VMFSCNTPGDLQEIIMHHLGIQKVLDRDRYLGLPIMIGRSKSVEFHLIKDRLWKQL 713
>gb|OMO90460.1| putative ribonuclease H protein [Corchorus capsularis]
Length = 423
Score = 68.2 bits (165), Expect(2) = 9e-16
Identities = 32/58 (55%), Positives = 42/58 (72%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYG 264
R+ + Q W G+ +S AGK++LIQS AQAIP MSCF+ P TF+ DLN IA+FW+G
Sbjct: 121 RLWKRLQSWSGRLLSIAGKSVLIQSVAQAIPTYLMSCFRFPKTFVHDLNKLIAKFWWG 178
Score = 44.3 bits (103), Expect(2) = 9e-16
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKS---VLRRIKEGLYQKI 419
+M S N P +R IM L + KV+DR++YLGLP+ G+S L+ IK L++++
Sbjct: 71 VMFSGNVPDCLRDSIMQHLGIHKVLDRDRYLGLPIMIGRSKRVELQLIKYRLWKRL 126
>gb|OMO67876.1| reverse transcriptase [Corchorus capsularis]
Length = 1293
Score = 63.5 bits (153), Expect(2) = 2e-15
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYG 264
R+++K + W+ + +S AGK+ILIQS AQ+IP MS FK P TFL +LNM +A +W+G
Sbjct: 1057 RLLAKIRGWNCRFLSIAGKSILIQSTAQSIPQYLMSVFKFPQTFLHELNMAVANYWWG 1114
Score = 48.1 bits (113), Expect(2) = 2e-15
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKS---VLRRIKEGLYQKI 419
+ S NTP R IM L V K++DR+KYLGLP+ G+S L+ IK L KI
Sbjct: 1007 VFFSSNTPENTRSSIMELLGVRKILDRDKYLGLPIMLGRSKKRELQYIKNRLLAKI 1062
>gb|OMO70912.1| reverse transcriptase [Corchorus capsularis]
Length = 1910
Score = 61.6 bits (148), Expect(2) = 3e-15
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -1
Query: 419 QCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYGI 261
Q W+ + S AGKAI+IQS AQAIP+ MS F+ P +F+ +LNM IA FW+G+
Sbjct: 1336 QRWNNRLFSIAGKAIMIQSIAQAIPVYLMSVFRFPRSFIHELNMVIANFWWGM 1388
Score = 49.3 bits (116), Expect(2) = 3e-15
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKSVLRR---IKEGLYQ 425
++ S NTP +R IMS L V ++++R+KYLGLP+ GKS R IK+ L Q
Sbjct: 1280 VLFSANTPPLVRVSIMSHLGVQRILERDKYLGLPIMIGKSKSREFLYIKDRLQQ 1333
>gb|OMO91484.1| reverse transcriptase [Corchorus capsularis]
Length = 955
Score = 58.2 bits (139), Expect(2) = 4e-15
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYG 264
R++ Q W K AGKA++IQS AQAIP+ MS F+ P +F+ +LN IA+FW+G
Sbjct: 403 RLIQCVQRWSSKLFFIAGKAVMIQSVAQAIPVYLMSIFRFPKSFIQELNGVIAKFWWG 460
Score = 52.0 bits (123), Expect(2) = 4e-15
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKSVLRR---IKEGLYQ 425
I S NTPV ++ +IM++L V K++D++KYLGLP+ G+S +R IK+ L Q
Sbjct: 353 IFFSANTPVRLQADIMNSLGVHKILDKDKYLGLPIMIGRSKVREFRYIKDRLIQ 406
>gb|OMO64639.1| reverse transcriptase [Corchorus capsularis]
Length = 1602
Score = 58.5 bits (140), Expect(2) = 1e-12
Identities = 27/58 (46%), Positives = 39/58 (67%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYG 264
R++ + W K S GKAI+I S AQ+IP+ MS F+ P +F+ +LNM IA+FW+G
Sbjct: 1163 RLLQRVASWRNKLFSIVGKAIMIHSIAQSIPVYLMSVFRFPKSFIHELNMIIAKFWWG 1220
Score = 43.5 bits (101), Expect(2) = 1e-12
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFGKS---VLRRIKEGLYQKI 419
I+ S N ++ IM L VS+V++R+KYLGLP+ GK+ L IKE L Q++
Sbjct: 1113 ILFSSNISSGLQDSIMRRLGVSRVLERDKYLGLPIMIGKNKKQELNFIKERLLQRV 1168
>gb|OMO96348.1| reverse transcriptase [Corchorus capsularis]
Length = 1025
Score = 61.2 bits (147), Expect(2) = 2e-12
Identities = 29/58 (50%), Positives = 38/58 (65%)
Frame = -1
Query: 437 RIVSKNQCWHGKHISQAGKAILIQSGAQAIPICFMSCFKLPITFLIDLNMKIAEFWYG 264
R+ + Q W G+ S GK ++IQ AQAIP MSCFK P TF+ +LN IA+FW+G
Sbjct: 639 RLWKRIQGWQGRLFSITGKVVMIQVVAQAIPTYLMSCFKFPKTFVQELNSIIAKFWWG 696
Score = 40.0 bits (92), Expect(2) = 2e-12
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = -2
Query: 577 IMMSPNTPVEIRYEIMSTLNVSKVMDREKYLGLPLCFG---KSVLRRIKEGLYQKI 419
++ S NTP I IM + V K++ R+KYLG P+ G K L+ +K+ L+++I
Sbjct: 589 VLFSSNTPDCILDSIMRRIGVQKILARDKYLGAPIMIGRNKKIELQMLKDRLWKRI 644
>gb|AAR07121.1| NdhC, partial (chloroplast) [Acmella radicans]
gb|AAR07180.1| NdhC, partial (chloroplast) [Eatonella nivea]
gb|AAR07250.1| NdhC, partial (chloroplast) [Melampodium leucanthum]
Length = 77
Score = 70.9 bits (172), Expect = 3e-12
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = -1
Query: 203 DAWLQFIIRYYMFAQVFVVFDVETVFLYPWAMSFVLI 93
DAWLQF IRYYMFA VFVVFDVETVFLYPWAMSF ++
Sbjct: 10 DAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDIL 46
>gb|OTG29063.1| putative NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
[Helianthus annuus]
Length = 106
Score = 71.6 bits (174), Expect = 3e-12
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = -1
Query: 203 DAWLQFIIRYYMFAQVFVVFDVETVFLYPWAMSFVLIER 87
DAWLQF IRYYMFA VFVVFDVETVFLYPWAMSF L R
Sbjct: 48 DAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDLHRR 86
>gb|AFU94035.1| NdhC, partial (chloroplast) [Medusagyne oppositifolia]
Length = 121
Score = 72.0 bits (175), Expect = 4e-12
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -1
Query: 203 DAWLQFIIRYYMFAQVFVVFDVETVFLYPWAMSFVLI 93
DAWLQF IRYYMFA VFVVFDVETVFLYPWAMSF L+
Sbjct: 54 DAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDLV 90
>gb|ALI89793.1| NdhC, partial (chloroplast) [Phytocrene racemosa]
Length = 71
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 203 DAWLQFIIRYYMFAQVFVVFDVETVFLYPWAMSF 102
DAWLQF IRYYMFA VFVVFDVETVFLYPWAMSF
Sbjct: 18 DAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 51
>gb|ALI89792.1| NdhC, partial (chloroplast) [Phytocrene borneensis]
Length = 75
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 203 DAWLQFIIRYYMFAQVFVVFDVETVFLYPWAMSF 102
DAWLQF IRYYMFA VFVVFDVETVFLYPWAMSF
Sbjct: 17 DAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 50
>gb|AFS89605.1| NADH-plastoquinone oxidoreductase subunit 3, partial (chloroplast)
[Fragaria chiloensis]
Length = 77
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 203 DAWLQFIIRYYMFAQVFVVFDVETVFLYPWAMSF 102
DAWLQF IRYYMFA VFVVFDVETVFLYPWAMSF
Sbjct: 10 DAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 43
>gb|AAR07162.1| NdhC, partial (chloroplast) [Dahlia coccinea]
Length = 77
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 203 DAWLQFIIRYYMFAQVFVVFDVETVFLYPWAMSF 102
DAWLQF IRYYMFA VFVVFDVETVFLYPWAMSF
Sbjct: 10 DAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 43
>gb|AAR07202.1| NdhC, partial (chloroplast) [Galeana pratensis]
Length = 77
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 203 DAWLQFIIRYYMFAQVFVVFDVETVFLYPWAMSF 102
DAWLQF IRYYMFA VFVVFDVETVFLYPWAMSF
Sbjct: 10 DAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 43
>gb|AAR07333.1| NdhC, partial (chloroplast) [Tetragonotheca repanda]
Length = 77
Score = 70.5 bits (171), Expect = 4e-12
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -1
Query: 203 DAWLQFIIRYYMFAQVFVVFDVETVFLYPWAMSF 102
DAWLQF IRYYMFA VFVVFDVETVFLYPWAMSF
Sbjct: 10 DAWLQFRIRYYMFAVVFVVFDVETVFLYPWAMSF 43