BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00023581
         (717 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY17337.1| retrotransposon-related protein [Trifolium pratense]   236   1e-67
dbj|GAU27665.1| hypothetical protein TSUD_126110 [Trifolium subt...   198   1e-61
gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trif...   199   1e-61
gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   197   4e-61
gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   197   1e-60
gb|PNX84282.1| hypothetical protein L195_g040340 [Trifolium prat...   205   5e-60
gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   201   1e-58
dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifo...   199   3e-58
dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subte...   198   4e-58
gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   200   1e-57
gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pra...   193   1e-57
dbj|GAU18876.1| hypothetical protein TSUD_228660 [Trifolium subt...   196   2e-57
dbj|GAU26218.1| hypothetical protein TSUD_354400 [Trifolium subt...   197   2e-57
gb|PNX96980.1| retrotransposon-related protein, partial [Trifoli...   196   3e-57
gb|PNX86534.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   199   4e-57
gb|KYP49340.1| Retrotransposable element Tf2 [Cajanus cajan]          185   5e-57
ref|XP_006601599.2| PREDICTED: uncharacterized protein LOC102665...   179   7e-57
gb|KYP55632.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]   194   9e-57
dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subt...   185   1e-56
gb|KYP55647.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]   194   3e-56

>gb|PNY17337.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1514

 Score =  236 bits (601), Expect = 1e-67
 Identities = 108/143 (75%), Positives = 129/143 (90%)
 Frame = +2

Query: 287  DFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQ 466
            +F   GMR DVK FV +C +CQT+KYST  P GLLQPLE+P+RVWED++LDFIVGLP S+
Sbjct: 1056 NFVWDGMRHDVKTFVSQCFVCQTVKYSTTPPNGLLQPLELPERVWEDVALDFIVGLPMSK 1115

Query: 467  GNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQF 646
            GNTSILVVIDR TKYAHFGALPT++TATKVA+LF +M+++LHG+PRTIVSDRDPIFTS+F
Sbjct: 1116 GNTSILVVIDRFTKYAHFGALPTHHTATKVAELFTNMIVKLHGIPRTIVSDRDPIFTSRF 1175

Query: 647  WKKLFKFMGTRLKMSSSYHPQTD 715
            W++LFK MGT+LKMSSSYHPQTD
Sbjct: 1176 WQELFKLMGTKLKMSSSYHPQTD 1198


>dbj|GAU27665.1| hypothetical protein TSUD_126110 [Trifolium subterraneum]
          Length = 1402

 Score =  198 bits (504), Expect(2) = 1e-61
 Identities = 91/152 (59%), Positives = 122/152 (80%)
 Frame = +2

Query: 260  RTYLHTS*HDFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLD 439
            RTY H    + +  G+++DV EFVK CV+CQ +K    +PYGLL PL +P RVWEDISLD
Sbjct: 981  RTYGHIK-ENVYWQGLQKDVTEFVKTCVVCQQVKPLQTSPYGLLHPLPIPDRVWEDISLD 1039

Query: 440  FIVGLPNSQGNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSD 619
            FI+GLP+ Q +T ILVV+DRL+K AHFG LP+N+ A KVA+LF +MV +LHG+PR++VSD
Sbjct: 1040 FIIGLPSFQNHTVILVVVDRLSKVAHFGMLPSNFGAVKVAELFINMVCKLHGMPRSMVSD 1099

Query: 620  RDPIFTSQFWKKLFKFMGTRLKMSSSYHPQTD 715
            RDPIF S+FW++LF+  GT+L+MS++YHPQ+D
Sbjct: 1100 RDPIFLSRFWRELFRLNGTKLRMSTAYHPQSD 1131



 Score = 67.4 bits (163), Expect(2) = 1e-61
 Identities = 32/84 (38%), Positives = 54/84 (64%)
 Frame = +3

Query: 21   TISGGQYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSK 200
            TI+  Q++FLN L+++  E    + L + I +     S +   +GL+F + +++L  DS 
Sbjct: 900  TITVPQWDFLNLLKEQLQEDTQFQELAQNIHQHPQSYSDYKLIDGLIFFRGKLFLPPDSP 959

Query: 201  LKKLMMQEFHESPTGGHAGVERTY 272
            +K+L++QEFH +P GGH+GV RTY
Sbjct: 960  MKQLLLQEFHATPLGGHSGVHRTY 983


>gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trifolium pratense]
          Length = 893

 Score =  199 bits (505), Expect(2) = 1e-61
 Identities = 92/143 (64%), Positives = 115/143 (80%)
 Frame = +2

Query: 287 DFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQ 466
           +F+   MR+++K+FV +C ICQ  KYST+ P GLLQPL +P  VWEDISLDFI GLP S 
Sbjct: 451 NFYWQHMRKEIKDFVARCFICQQTKYSTSKPSGLLQPLPIPSNVWEDISLDFITGLPLSG 510

Query: 467 GNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQF 646
           G + +LVV+DR +KY H GALP+++TA KVA+LF +MV +LHG+PR+IVSDRDPIF S+F
Sbjct: 511 GYSVLLVVVDRFSKYTHLGALPSHFTAYKVAELFVNMVCKLHGMPRSIVSDRDPIFISKF 570

Query: 647 WKKLFKFMGTRLKMSSSYHPQTD 715
           W  LFKF GT L+MSSSYHPQTD
Sbjct: 571 WSDLFKFSGTLLRMSSSYHPQTD 593



 Score = 66.6 bits (161), Expect(2) = 1e-61
 Identities = 35/91 (38%), Positives = 51/91 (56%)
 Frame = +3

Query: 24  ISGGQYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKL 203
           +S   + F+NELR+E  +    + L   +         F   NGLL    RI++  +SK 
Sbjct: 363 LSTPPFLFINELREELQQNSSYQELCHNVISDPTKFPDFVISNGLLLMNGRIWIPANSKF 422

Query: 204 KKLMMQEFHESPTGGHAGVERTYIRLSTIFF 296
           K L+++EFHE+P GGHAGV +T  RLS  F+
Sbjct: 423 KVLLLKEFHETPVGGHAGVIKTLKRLSANFY 453


>gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
 gb|PNY07311.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1494

 Score =  197 bits (501), Expect(2) = 4e-61
 Identities = 91/143 (63%), Positives = 112/143 (78%)
 Frame = +2

Query: 287  DFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQ 466
            +F+   MR++VK+F+  CVICQ  KYSTA P GLLQPL +P  VWEDIS+DF+ GLP S 
Sbjct: 1045 NFYWSDMRKEVKQFIASCVICQQTKYSTAKPGGLLQPLPIPSNVWEDISMDFVTGLPQSN 1104

Query: 467  GNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQF 646
            G + ILVV+DR +K  H GALP  +TA KVA+LF +MV ++HG+PR+IVSDRDPIF S+F
Sbjct: 1105 GYSVILVVVDRFSKAVHLGALPAQFTAYKVAELFINMVCKIHGLPRSIVSDRDPIFISKF 1164

Query: 647  WKKLFKFMGTRLKMSSSYHPQTD 715
            W  LFKF GT L+MSSSYHPQTD
Sbjct: 1165 WADLFKFSGTLLRMSSSYHPQTD 1187



 Score = 66.6 bits (161), Expect(2) = 4e-61
 Identities = 32/91 (35%), Positives = 56/91 (61%)
 Frame = +3

Query: 24   ISGGQYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKL 203
            +S  Q+ F+NEL+++ +     + LR  I      +  +  +NGL+ ++ RI++S  S  
Sbjct: 957  LSVPQFVFINELKQDLEADSTFQELRACIETDPAGNPGYAVKNGLILYQGRIWISPTSHY 1016

Query: 204  KKLMMQEFHESPTGGHAGVERTYIRLSTIFF 296
            K L+++EFHE+P GGHAG+ +T  RL+  F+
Sbjct: 1017 KSLLLKEFHETPIGGHAGIIKTLKRLAANFY 1047


>gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 856

 Score =  197 bits (500), Expect(2) = 1e-60
 Identities = 91/143 (63%), Positives = 112/143 (78%)
 Frame = +2

Query: 287 DFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQ 466
           +F+   MR DVKEF+  CV+CQ  KYSTA P GLLQPL +P  +WEDISLDF+ GLP S 
Sbjct: 409 NFYWANMRTDVKEFINCCVVCQQTKYSTAKPGGLLQPLPIPSNIWEDISLDFVTGLPLSH 468

Query: 467 GNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQF 646
           G T ILVV+DR +K  H GALPT +TA +VA+LF ++V +LHG+P++IVSDRDPIF S+F
Sbjct: 469 GYTVILVVVDRFSKAVHLGALPTQFTAYRVAELFVNLVCKLHGLPKSIVSDRDPIFISRF 528

Query: 647 WKKLFKFMGTRLKMSSSYHPQTD 715
           W  LF+F GT L+MSSSYHPQTD
Sbjct: 529 WADLFRFSGTLLRMSSSYHPQTD 551



 Score = 65.1 bits (157), Expect(2) = 1e-60
 Identities = 33/87 (37%), Positives = 52/87 (59%)
 Frame = +3

Query: 36  QYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKLKKLM 215
           Q+ FL+ELR++         LR +I         FT R+ L+   ++I++S  S+ K+L+
Sbjct: 325 QFLFLDELRQDLSNDPAYIELRAKIESTPHQFPEFTLRDALILRHNKIWVSPTSRFKRLL 384

Query: 216 MQEFHESPTGGHAGVERTYIRLSTIFF 296
           M+EFHE+P GGH G+ +T  RLS  F+
Sbjct: 385 MKEFHETPVGGHGGIVKTLKRLSENFY 411


>gb|PNX84282.1| hypothetical protein L195_g040340 [Trifolium pratense]
          Length = 482

 Score =  205 bits (522), Expect = 5e-60
 Identities = 95/141 (67%), Positives = 117/141 (82%)
 Frame = +2

Query: 293 F*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGN 472
           F  GMR+DV  FVK CVICQ  K +T +PYGLLQPL +P +VWEDISLDF+VGLP+ Q N
Sbjct: 42  FWEGMRKDVTAFVKSCVICQQTKPATHSPYGLLQPLPIPGQVWEDISLDFVVGLPSFQAN 101

Query: 473 TSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWK 652
           T ILVV+DRL+K AHFG LPT +TA KVADLF  M+ +LHG+PR+IVSDRDPIF S+FW+
Sbjct: 102 TVILVVVDRLSKAAHFGMLPTQFTAAKVADLFVRMICKLHGMPRSIVSDRDPIFLSRFWQ 161

Query: 653 KLFKFMGTRLKMSSSYHPQTD 715
           +LF+  GT+L+MSS+YHPQ+D
Sbjct: 162 ELFRLSGTKLRMSSAYHPQSD 182


>gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1474

 Score =  201 bits (512), Expect(2) = 1e-58
 Identities = 93/138 (67%), Positives = 115/138 (83%)
 Frame = +2

Query: 302  GMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSI 481
            GMR DV  FVK C ICQ  K +  +PYGLLQPL +P++VWEDISLDFIVGLP+ Q +T I
Sbjct: 1053 GMRNDVTHFVKSCSICQQTKPANHSPYGLLQPLPIPEKVWEDISLDFIVGLPSVQSHTVI 1112

Query: 482  LVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLF 661
             VV+DRL+K AHFG+LPT++TA KVADLF  MV +LHG+PR+IVSDRDPIF SQFW++LF
Sbjct: 1113 FVVVDRLSKAAHFGSLPTHFTAIKVADLFAKMVCKLHGMPRSIVSDRDPIFLSQFWQELF 1172

Query: 662  KFMGTRLKMSSSYHPQTD 715
            K  GT+L+MS++YHPQ+D
Sbjct: 1173 KLSGTKLRMSTAYHPQSD 1190



 Score = 54.3 bits (129), Expect(2) = 1e-58
 Identities = 28/87 (32%), Positives = 45/87 (51%)
 Frame = +3

Query: 36   QYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKLKKLM 215
            Q +FL   +++     + +    ++       S F   NGLLF K ++++   S LK  +
Sbjct: 964  QMDFLTTFKQQLAVDTEFQQFLAQVQAKPAEYSEFEIMNGLLFFKGKLFIPATSPLKLTL 1023

Query: 216  MQEFHESPTGGHAGVERTYIRLSTIFF 296
            ++EFH S  GGH+G+ RTY RL    F
Sbjct: 1024 LEEFHASTIGGHSGIHRTYGRLQENVF 1050


>dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifolium subterraneum]
          Length = 1147

 Score =  199 bits (506), Expect(2) = 3e-58
 Identities = 91/141 (64%), Positives = 116/141 (82%)
 Frame = +2

Query: 293  F*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGN 472
            F  GMR+DV +FVK C +CQ  K +  +PYGLLQPL +P RVWED+SLDFIVGLP+ Q +
Sbjct: 690  FWEGMRKDVIQFVKSCSVCQQNKPTNHSPYGLLQPLPIPHRVWEDVSLDFIVGLPSFQSH 749

Query: 473  TSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWK 652
            T+ILVV+DRL+K AHFG LPT++TA KVADLF  M+ RLHG+PR++VSDRDPIF S FW+
Sbjct: 750  TAILVVVDRLSKAAHFGLLPTHFTAVKVADLFAKMICRLHGMPRSMVSDRDPIFLSHFWQ 809

Query: 653  KLFKFMGTRLKMSSSYHPQTD 715
            +LF   GT+L+MS++YHPQ+D
Sbjct: 810  ELFHLSGTKLRMSTAYHPQSD 830



 Score = 55.1 bits (131), Expect(2) = 3e-58
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
 Frame = +3

Query: 36  QYEFLNELRK---ENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKLK 206
           Q +FL   ++   E+ E +   +L  + T  D  D  F   NGLLF K ++++   S LK
Sbjct: 604 QLDFLTTFKQQLAEDSEFQQFLAL-VKATPTDYPD--FELLNGLLFFKGKLFIPATSPLK 660

Query: 207 KLMMQEFHESPTGGHAGVERTYIRLSTIFF 296
             +++EFH S  GGH+G+ RTY RL    F
Sbjct: 661 HTLLEEFHSSTIGGHSGIHRTYGRLQENVF 690


>dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subterraneum]
          Length = 1358

 Score =  198 bits (503), Expect(2) = 4e-58
 Identities = 89/141 (63%), Positives = 115/141 (81%)
 Frame = +2

Query: 293  F*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGN 472
            F  GMR+DV +FVK C +CQ  K +   PYGLLQPL +P RVWED+SLDFIVGLP+ Q +
Sbjct: 1023 FWEGMRKDVTQFVKSCSVCQQTKPANHYPYGLLQPLPIPNRVWEDVSLDFIVGLPSFQSH 1082

Query: 473  TSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWK 652
            T ILVV+DR +K AHFG+LPT++TA +VADLF  M+ RLHG+PR++VSDRDPIF S FW+
Sbjct: 1083 TVILVVVDRFSKAAHFGSLPTHFTAVRVADLFAKMICRLHGMPRSMVSDRDPIFLSHFWQ 1142

Query: 653  KLFKFMGTRLKMSSSYHPQTD 715
            +LF+  GT+L+MS++YHPQ+D
Sbjct: 1143 ELFRLSGTKLRMSTAYHPQSD 1163



 Score = 55.8 bits (133), Expect(2) = 4e-58
 Identities = 28/87 (32%), Positives = 46/87 (52%)
 Frame = +3

Query: 36   QYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKLKKLM 215
            Q +FL   +++     + +    R+       S F   NGLLF K ++++  +S LK  +
Sbjct: 937  QLDFLATFKQQLAAETEFQQFLARVISNPAEYSDFEVMNGLLFVKGKLFIPANSPLKTTL 996

Query: 216  MQEFHESPTGGHAGVERTYIRLSTIFF 296
            ++EFH S  GGH+G+ RT+ RL    F
Sbjct: 997  LEEFHSSTIGGHSGIHRTFGRLQENVF 1023


>gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1510

 Score =  200 bits (508), Expect(2) = 1e-57
 Identities = 91/138 (65%), Positives = 114/138 (82%)
 Frame = +2

Query: 302  GMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSI 481
            GMR DV +FVK C ICQ  K  T +PYGLLQPL +P +VWEDISLDF+VGLP+ Q +T +
Sbjct: 1059 GMRNDVTQFVKSCAICQQTKPPTHSPYGLLQPLPIPDKVWEDISLDFVVGLPSFQTHTVV 1118

Query: 482  LVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLF 661
            LVV+DRL+K AHFG LPT++TA KVADLF  MV +LHG+PR+IVSDRDPIF S FW++LF
Sbjct: 1119 LVVVDRLSKAAHFGLLPTHFTAAKVADLFAKMVCKLHGMPRSIVSDRDPIFLSHFWQELF 1178

Query: 662  KFMGTRLKMSSSYHPQTD 715
            +  GT+L+MS++YHPQ+D
Sbjct: 1179 RLSGTKLRMSTAYHPQSD 1196



 Score = 52.4 bits (124), Expect(2) = 1e-57
 Identities = 25/85 (29%), Positives = 48/85 (56%)
 Frame = +3

Query: 42   EFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKLKKLMMQ 221
            +FL+ L+++  + ++ + L   + +       F   + LLF K ++++  +S LK  +++
Sbjct: 972  DFLHTLKEQLVQDDEFQQLLTNVKENPDAHMGFEILDDLLFFKGKLFIPSNSPLKVTLLE 1031

Query: 222  EFHESPTGGHAGVERTYIRLSTIFF 296
            EFH S  GGH+G+ RT+ RL    F
Sbjct: 1032 EFHSSTIGGHSGIHRTFGRLQENVF 1056


>gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pratense]
          Length = 843

 Score =  193 bits (490), Expect(2) = 1e-57
 Identities = 86/143 (60%), Positives = 111/143 (77%)
 Frame = +2

Query: 287 DFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQ 466
           +FF  GMR+D++ F+ KC +CQ+ KY T  P GLLQPL VP  +WED+SLDFI GLP S 
Sbjct: 408 NFFWQGMRQDIRSFIAKCSVCQSTKYETKKPAGLLQPLPVPSGIWEDLSLDFITGLPPSH 467

Query: 467 GNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQF 646
           G T+I VV+DR +K AHF ALPT YTA KVA LF   + + HG+PR++VSDRDP+F SQF
Sbjct: 468 GYTTIFVVVDRFSKGAHFSALPTTYTAYKVAQLFLDTICKHHGMPRSLVSDRDPVFISQF 527

Query: 647 WKKLFKFMGTRLKMSSSYHPQTD 715
           W++LFK  GT+L+MS++YHP+TD
Sbjct: 528 WRELFKLSGTQLRMSTAYHPETD 550



 Score = 59.3 bits (142), Expect(2) = 1e-57
 Identities = 30/86 (34%), Positives = 47/86 (54%)
 Frame = +3

Query: 39  YEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKLKKLMM 218
           + FLNEL+ +    ++ + L+  I +     S       L+F K +I+L +D  LK  ++
Sbjct: 325 FVFLNELKSQLSTTQEFQQLKLAIAQQPASYSDNEEHQDLIFFKKKIWLPRDFSLKDRIL 384

Query: 219 QEFHESPTGGHAGVERTYIRLSTIFF 296
            EFH SP  GH GV++T+ RL   FF
Sbjct: 385 HEFHNSPISGHMGVDKTFHRLQANFF 410


>dbj|GAU18876.1| hypothetical protein TSUD_228660 [Trifolium subterraneum]
          Length = 1494

 Score =  196 bits (499), Expect(2) = 2e-57
 Identities = 92/138 (66%), Positives = 114/138 (82%)
 Frame = +2

Query: 302  GMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSI 481
            GMR+DV+EFVK CVICQ +K    APYGLLQPL +P RVWEDIS+DFIVGLP+ Q +T I
Sbjct: 1062 GMRKDVEEFVKTCVICQQMKSVNHAPYGLLQPLPIPDRVWEDISMDFIVGLPSFQSHTVI 1121

Query: 482  LVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLF 661
             VV+DRL+K AHFG L T++TA KVADLF  MV +L G+PR+IVSDRDPIF S FW++LF
Sbjct: 1122 FVVVDRLSKAAHFGMLATHFTAAKVADLFATMVCKLLGMPRSIVSDRDPIFLSNFWQELF 1181

Query: 662  KFMGTRLKMSSSYHPQTD 715
            +  GT+L+MS++YHPQ+D
Sbjct: 1182 RLSGTKLRMSTAYHPQSD 1199



 Score = 55.1 bits (131), Expect(2) = 2e-57
 Identities = 26/85 (30%), Positives = 47/85 (55%)
 Frame = +3

Query: 42   EFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKLKKLMMQ 221
            EF+ +L+++     + +    ++        +F   +GL+F K +++L   S LK  +++
Sbjct: 975  EFMTKLKEQLINDTEFQQFLGKVQHQPADFENFQVMDGLIFFKGKLFLPNSSPLKLTLLE 1034

Query: 222  EFHESPTGGHAGVERTYIRLSTIFF 296
            EFH SP GGH+G+ RT+ RL    F
Sbjct: 1035 EFHSSPIGGHSGIHRTFGRLQENVF 1059


>dbj|GAU26218.1| hypothetical protein TSUD_354400 [Trifolium subterraneum]
          Length = 1332

 Score =  197 bits (502), Expect(2) = 2e-57
 Identities = 91/138 (65%), Positives = 113/138 (81%)
 Frame = +2

Query: 302  GMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSI 481
            GM+ DV +FVK C  CQ  K S   PYGLL PL VP+RVWEDISLDFIVGLP+ Q +T +
Sbjct: 981  GMQSDVTQFVKSCATCQQTKSSNHLPYGLLNPLPVPERVWEDISLDFIVGLPSFQTHTVV 1040

Query: 482  LVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLF 661
            LVV+DRL+K AHFG+LPT++TA KVADLF  MV +LHG+P++IVSDRDPIF S FWK+LF
Sbjct: 1041 LVVVDRLSKTAHFGSLPTHFTAAKVADLFAQMVCKLHGMPKSIVSDRDPIFLSNFWKELF 1100

Query: 662  KFMGTRLKMSSSYHPQTD 715
            +  GT+L+MS++YHPQ+D
Sbjct: 1101 RLNGTKLRMSTAYHPQSD 1118



 Score = 53.9 bits (128), Expect(2) = 2e-57
 Identities = 27/85 (31%), Positives = 48/85 (56%)
 Frame = +3

Query: 42   EFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKLKKLMMQ 221
            +F+   +++  + ++ + L  ++ +       F   +GLLF K +++L   S LK+ +++
Sbjct: 894  DFITTFKQQLLQDDEFQQLLAQVQRQPHDHKDFKVIDGLLFFKGKLFLPSKSPLKQTLLE 953

Query: 222  EFHESPTGGHAGVERTYIRLSTIFF 296
            EFH S  GGH+GV RTY RL    F
Sbjct: 954  EFHSSIIGGHSGVHRTYGRLQENVF 978


>gb|PNX96980.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1220

 Score =  196 bits (498), Expect(2) = 3e-57
 Identities = 91/137 (66%), Positives = 112/137 (81%)
 Frame = +2

Query: 305  MRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSIL 484
            MR DV +FVK C ICQ  K+    PYGLLQPL VP  VWEDISLDFI+GLP+ Q +T IL
Sbjct: 811  MREDVTKFVKACDICQQTKHPNHLPYGLLQPLPVPAGVWEDISLDFIIGLPSFQTHTVIL 870

Query: 485  VVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFK 664
            VV+DR +K AHFG LPT++TA+KVADLF  M+ RLHG+P++IVSDRDPIF S+FW+KLF+
Sbjct: 871  VVVDRFSKAAHFGMLPTHHTASKVADLFARMICRLHGMPKSIVSDRDPIFVSKFWQKLFQ 930

Query: 665  FMGTRLKMSSSYHPQTD 715
              GT+L+MS++YHPQTD
Sbjct: 931  LSGTKLRMSTAYHPQTD 947



 Score = 54.7 bits (130), Expect(2) = 3e-57
 Identities = 24/87 (27%), Positives = 50/87 (57%)
 Frame = +3

Query: 21  TISGGQYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSK 200
           TI+   ++F+ +LR+       ++ L +++         F     LLF++ ++++  +S 
Sbjct: 716 TITIPHWDFIQQLRQSFLADASLQELMKQVRDSPSTHPEFQIIQDLLFYRGKLFIPTNSS 775

Query: 201 LKKLMMQEFHESPTGGHAGVERTYIRL 281
           +K ++++EFH SP GGH+G+ +T  RL
Sbjct: 776 IKTMLLEEFHSSPIGGHSGIHKTLGRL 802


>gb|PNX86534.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 544

 Score =  199 bits (506), Expect = 4e-57
 Identities = 91/142 (64%), Positives = 114/142 (80%)
 Frame = +2

Query: 290 FF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQG 469
           F+  GMR+ V+ FV  C++CQ IKY+T  P GLLQPL +P+ VWEDI++DFI GLP S G
Sbjct: 122 FYWQGMRKSVENFVASCLVCQQIKYATQVPAGLLQPLPIPEAVWEDITMDFITGLPPSHG 181

Query: 470 NTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFW 649
           +T I VV+DRLTK AHFGALPT +TA+KVA+LF  +V+R HG PR+IVSDRDP+F S FW
Sbjct: 182 STVIFVVVDRLTKSAHFGALPTAFTASKVAELFVSIVVRHHGFPRSIVSDRDPVFISTFW 241

Query: 650 KKLFKFMGTRLKMSSSYHPQTD 715
           +KLF+  GT+L MSS+YHPQTD
Sbjct: 242 RKLFELSGTKLAMSSAYHPQTD 263



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 32/105 (30%), Positives = 63/105 (60%)
 Frame = +3

Query: 12  LRTTISGGQYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQ 191
           L + ++   +  +++L+KEN     +     + ++G L +  FT  NGLL HK R  ++ 
Sbjct: 30  LLSLVTTPTFGIVHQLQKENASDPFLLDFHNQHSQGTL-ELPFTVANGLLLHKGRYVVNS 88

Query: 192 DSKLKKLMMQEFHESPTGGHAGVERTYIRLSTIFFSRA*GETLKN 326
            S +  +++ EFH++P+GGHAGV+RT  R++  F+ +   ++++N
Sbjct: 89  ASPICSIIISEFHDTPSGGHAGVKRTLARVAASFYWQGMRKSVEN 133


>gb|KYP49340.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 734

 Score =  185 bits (470), Expect(2) = 5e-57
 Identities = 86/143 (60%), Positives = 108/143 (75%)
 Frame = +2

Query: 287 DFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQ 466
           +FF   MR DV+ FV +C  CQ +KY T  P GLLQPL +P  +WED+SLDFI  LP S+
Sbjct: 411 NFFWSHMRADVQHFVAQCHTCQQLKYETKKPAGLLQPLPIPSTIWEDLSLDFITCLPPSR 470

Query: 467 GNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQF 646
           G T++LVV+DR +K  HFG LPT+++A KVA LF  MV +LHG PR+IVSDRDPIF S F
Sbjct: 471 GYTAVLVVVDRFSKGVHFGPLPTHFSAFKVAQLFLDMVCKLHGFPRSIVSDRDPIFISHF 530

Query: 647 WKKLFKFMGTRLKMSSSYHPQTD 715
           W+ LFK  GT+L+MS+SYHP+TD
Sbjct: 531 WRDLFKLSGTKLRMSTSYHPETD 553



 Score = 64.7 bits (156), Expect(2) = 5e-57
 Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
 Frame = +3

Query: 24  ISGGQYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWR--NGLLFHKDRIYLSQDS 197
           +S  Q+ FL++LR+         SLR+ I +    DSH  +R  NGL+  + RI +S  +
Sbjct: 323 LSMPQFTFLDQLRQSLHTDPAFCSLRQAILEHP--DSHAEYRIHNGLVLFQGRILISPTN 380

Query: 198 KLKKLMMQEFHESPTGGHAGVERTYIRLSTIFF 296
             K+L+++EFH +P GGH GV +T+ RL+T FF
Sbjct: 381 SFKQLLLEEFHTTPLGGHMGVTKTFKRLNTNFF 413


>ref|XP_006601599.2| PREDICTED: uncharacterized protein LOC102665580 [Glycine max]
          Length = 1416

 Score =  179 bits (455), Expect(2) = 7e-57
 Identities = 84/137 (61%), Positives = 102/137 (74%)
 Frame = +2

Query: 305  MRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQGNTSIL 484
            MR DV+ FV  CV CQ  KY T  P GLL PL VP R WED+S+DFIVGLP  +G T I 
Sbjct: 992  MRNDVRTFVAACVTCQMTKYDTRKPAGLLCPLPVPYRPWEDLSMDFIVGLPPYRGYTCIF 1051

Query: 485  VVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQFWKKLFK 664
            VV+DR +K  H G LPT +TA KVA+LF  MV RLHG+PR+I+SDRDP+F S+FW++LF 
Sbjct: 1052 VVVDRFSKALHLGMLPTKHTAKKVAELFMSMVTRLHGLPRSIISDRDPLFVSKFWRQLFT 1111

Query: 665  FMGTRLKMSSSYHPQTD 715
              GT+L++SSSYHPQ D
Sbjct: 1112 LSGTKLRLSSSYHPQMD 1128



 Score = 70.1 bits (170), Expect(2) = 7e-57
 Identities = 33/90 (36%), Positives = 55/90 (61%)
 Frame = +3

Query: 24   ISGGQYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKL 203
            +S  Q+ F+N+L+ E     +  +L+++I  G    + +   NGL+ HK RI+L   S +
Sbjct: 898  LSVPQFSFINDLKHELATNPEFLALQQKIQHGTEAAAEYRIENGLILHKRRIWLPTGSSI 957

Query: 204  KKLMMQEFHESPTGGHAGVERTYIRLSTIF 293
              L+++EFH +PTGGH GV++T+ RL   F
Sbjct: 958  IPLLLEEFHSTPTGGHYGVQKTFQRLQENF 987


>gb|KYP55632.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]
          Length = 934

 Score =  194 bits (494), Expect(2) = 9e-57
 Identities = 88/143 (61%), Positives = 112/143 (78%)
 Frame = +2

Query: 287 DFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQ 466
           +FF   MR+DV  FV +C  CQ  K  T  P GLLQP+  P R WED+SLDFI+GLP  Q
Sbjct: 488 NFFWENMRKDVLTFVAQCTTCQQTKVPTQRPLGLLQPIPPPSRCWEDLSLDFIIGLPPYQ 547

Query: 467 GNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQF 646
           G+T+ILVV+DR +K AHFG LP ++TA KVADLF HMV +LHG+PR+++SDRDPIF SQF
Sbjct: 548 GHTTILVVVDRFSKGAHFGMLPRSFTAAKVADLFTHMVCKLHGLPRSLISDRDPIFLSQF 607

Query: 647 WKKLFKFMGTRLKMSSSYHPQTD 715
           W++LF+  GT+L+MS++YHPQTD
Sbjct: 608 WRELFRLSGTKLRMSTAYHPQTD 630



 Score = 54.7 bits (130), Expect(2) = 9e-57
 Identities = 29/91 (31%), Positives = 47/91 (51%)
 Frame = +3

Query: 24  ISGGQYEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKL 203
           IS  Q +FL +L++          L+ER+ +       F+    L+ HK +I+L +   +
Sbjct: 400 ISITQMDFLADLKRCLSRDNAFLDLKERLLQAPSSFPDFSIHQDLILHKGKIWLPRSCSM 459

Query: 204 KKLMMQEFHESPTGGHAGVERTYIRLSTIFF 296
            +L++ EFH +P  GH GV RT  +L   FF
Sbjct: 460 IQLLLHEFHSTPLAGHPGVTRTLAKLQANFF 490


>dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subterraneum]
          Length = 1853

 Score =  185 bits (469), Expect(2) = 1e-56
 Identities = 85/143 (59%), Positives = 110/143 (76%)
 Frame = +2

Query: 287  DFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQ 466
            +F+  G+++DV  +V  C  CQ  K  T APYGLLQPL +PK +WEDIS+DFIVGLP+ Q
Sbjct: 1079 NFYWVGLKQDVVNYVNSCHTCQQTKDPTHAPYGLLQPLPIPKHIWEDISMDFIVGLPSFQ 1138

Query: 467  GNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQF 646
              T I VV+DR +K AHFG LPT +TA KVA+LF  MV +LHG+P +IVSDRDPIF S+F
Sbjct: 1139 HYTVIFVVVDRFSKAAHFGMLPTGFTAVKVAELFTTMVCKLHGMPHSIVSDRDPIFLSKF 1198

Query: 647  WKKLFKFMGTRLKMSSSYHPQTD 715
            W++LF   GT+L+MS++YHPQ+D
Sbjct: 1199 WQELFHLSGTKLRMSTAYHPQSD 1221



 Score = 63.9 bits (154), Expect(2) = 1e-56
 Identities = 27/86 (31%), Positives = 51/86 (59%)
 Frame = +3

Query: 39   YEFLNELRKENDELEDIKSLRERITKGDLVDSHFTWRNGLLFHKDRIYLSQDSKLKKLMM 218
            ++FL +L+ E ++  ++K L  ++        +F    GLL+ K R+Y+   S  K +++
Sbjct: 996  WKFLEKLQAEINQDSEVKDLMSKVANDPNSYPNFKIIKGLLYFKGRLYIPASSSFKNILL 1055

Query: 219  QEFHESPTGGHAGVERTYIRLSTIFF 296
            +E H +P GGH+G++RTY R+   F+
Sbjct: 1056 EEIHATPVGGHSGIQRTYGRMKENFY 1081


>gb|KYP55647.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]
          Length = 447

 Score =  194 bits (494), Expect = 3e-56
 Identities = 88/143 (61%), Positives = 112/143 (78%)
 Frame = +2

Query: 287 DFF*PGMRRDVKEFVKKCVICQTIKYSTAAPYGLLQPLEVPKRVWEDISLDFIVGLPNSQ 466
           +FF   MR+DV  FV +C  CQ  K  T  P GLLQP+  P R WED+SLDFI+GLP  Q
Sbjct: 30  NFFWENMRKDVLTFVAQCTTCQQTKVPTQRPLGLLQPIPPPSRCWEDLSLDFIIGLPPYQ 89

Query: 467 GNTSILVVIDRLTKYAHFGALPTNYTATKVADLFCHMVIRLHGVPRTIVSDRDPIFTSQF 646
           G+T+ILVV+DR +K AHFG LP ++TA KVADLF HMV +LHG+PR+++SDRDPIF SQF
Sbjct: 90  GHTTILVVVDRFSKGAHFGMLPRSFTAAKVADLFTHMVCKLHGLPRSLISDRDPIFLSQF 149

Query: 647 WKKLFKFMGTRLKMSSSYHPQTD 715
           W++LF+  GT+L+MS++YHPQTD
Sbjct: 150 WRELFRLSGTKLRMSTAYHPQTD 172