BLASTX nr result

ID: Rehmannia32_contig00021124 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00021124
         (354 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011074260.2| LOW QUALITY PROTEIN: DEAD-box ATP-dependent ...    62   8e-09
gb|PIN06780.1| ATP-dependent RNA helicase [Handroanthus impetigi...    61   2e-08

>ref|XP_011074260.2| LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 39
           [Sesamum indicum]
          Length = 626

 Score = 62.4 bits (150), Expect = 8e-09
 Identities = 39/76 (51%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +1

Query: 4   KKTSVARAGKAPAFSKGNKKVIKVFXXXXXXXXXXXXXXXXXXXX-QSGNRNSGVVKSTS 180
           +KTS  ++ KAPA SK  K VIKV                      Q G+RNSGVV+STS
Sbjct: 552 RKTSAPKSSKAPAISKA-KSVIKVLKTSKTSSRGSTPRGTTSSGKKQLGSRNSGVVRSTS 610

Query: 181 RLNVVGFRGRSAVKTG 228
           +LNVVGFRGRSAVK G
Sbjct: 611 KLNVVGFRGRSAVKAG 626


>gb|PIN06780.1| ATP-dependent RNA helicase [Handroanthus impetiginosus]
          Length = 638

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
 Frame = +1

Query: 4   KKTSVARAGKAPAFSKGNKKVIKVFXXXXXXXXXXXXXXXXXXXXQSGNRNSGVVKS-TS 180
           KK S  ++GK PA SK  KKV++V                      S NR+SGVV+S TS
Sbjct: 564 KKNSATKSGKGPAISKAKKKVVRVLKTSKSPGTSTSRGTSSSGKRHS-NRSSGVVRSSTS 622

Query: 181 RLNVVGFRGRSAVKTG 228
           +LNVVGFRGRSAVK G
Sbjct: 623 KLNVVGFRGRSAVKAG 638


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