BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00020294
         (1566 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   788   0.0  
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   761   0.0  
emb|CDP17738.1| unnamed protein product [Coffea canephora]            635   0.0  
emb|CDP17739.1| unnamed protein product [Coffea canephora]            602   0.0  
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   519   e-173
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   518   e-170
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   513   e-165
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   521   e-165
gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposo...   486   e-164
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   521   e-163
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     504   e-163
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          490   e-161
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   514   e-160
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo...   477   e-159
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     494   e-159
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     491   e-158
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   491   e-157
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   488   e-157
gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposo...   464   e-156
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   491   e-155

>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  788 bits (2034), Expect = 0.0
 Identities = 383/511 (74%), Positives = 433/511 (84%), Gaps = 3/511 (0%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKESE 182
            LGALESKGL+VT+RDG+LKAT G+LV++KG+ +NNLYYYQG+TV+GT A A S ++K++E
Sbjct: 296  LGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAE 355

Query: 183  AAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGI 362
            AAKLWHMRLGHAGEKSLQ L KQGLLK  K CKL+FCEHCVLGKQ+RVKFGTAIHNT+GI
Sbjct: 356  AAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGI 415

Query: 363  LDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQT 542
            LDYVHSDVWGP+KTPS+GG+HYFVTF+DDFSRRVWV+TMK K++VL IFLKWK  +EN T
Sbjct: 416  LDYVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHT 475

Query: 543  GRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCML 722
            GRKIKVL+TDNGGEY SDPF  VC   GIVRHFTVR+TPQQNGV+ERMN+TLVEKV CML
Sbjct: 476  GRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTVRKTPQQNGVSERMNKTLVEKVCCML 535

Query: 723  SNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHV 902
            SNA LGR+ WAEAVTYAQHL+NRLPSSAI GKTPLEVWSGKP TDYDSL VFGS+AYYHV
Sbjct: 536  SNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPATDYDSLHVFGSIAYYHV 595

Query: 903  KESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSAL 1082
             ESKL+PRAK+ALFMG + GVKGYRLWCLE KK + SRDVTFDE  MLK V  E TDS  
Sbjct: 596  IESKLDPRAKKALFMGFSPGVKGYRLWCLEKKKTIISRDVTFDESVMLKKVNPEGTDSTP 655

Query: 1083 QQVERTPKQVEVEEMAIIPAKN---DNPVTEDLSDDDEEEVQTQEPLDQSEPIAVRRPRR 1253
            QQVE   KQVE E   +IP +N   D+P+ E+  + DEEEV TQE   QS PIAVRR RR
Sbjct: 656  QQVECVRKQVEFEPTVVIPTRNTTSDSPMAEE--ESDEEEVPTQESQQQSAPIAVRRQRR 713

Query: 1254 EIHKPARFADMVAYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQ 1433
            +I KPARF DMVAYALPV+ DD+P T+   + S ES  W GAMEEEMQSL+KNKTWK+TQ
Sbjct: 714  DIQKPARFMDMVAYALPVV-DDIPSTYPGVILSSESGNWAGAMEEEMQSLKKNKTWKLTQ 772

Query: 1434 LPKGKKAIGCKWVFAKKDGFPNKNDVRYKAR 1526
            LPKGKKAIGCKWVFAKK+ F NK DVRYKAR
Sbjct: 773  LPKGKKAIGCKWVFAKKEKFSNKEDVRYKAR 803


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  761 bits (1966), Expect = 0.0
 Identities = 370/522 (70%), Positives = 425/522 (81%), Gaps = 1/522 (0%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNN-LYYYQGNTVIGTAAVADSRNEKES 179
            +GALE KG  V    GV+K  SG+LVVMKG+R+NN LYYYQG T+IGTAAVA S +EKE 
Sbjct: 145  VGALEEKGFTVHAEGGVMKIISGALVVMKGVRKNNRLYYYQGTTIIGTAAVASS-DEKEL 203

Query: 180  EAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEG 359
            E+AKLWHMRLGHAGE+SL  L KQGLLK+++ CKLDFCEHCV GK+ RVKFGTAIH+T+G
Sbjct: 204  ESAKLWHMRLGHAGERSLNLLMKQGLLKNIQACKLDFCEHCVKGKKTRVKFGTAIHDTKG 263

Query: 360  ILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQ 539
            ILDYVHSDVWGPSKT SL G HY+VTF+DDFSRR+WVY MKTKDEVLGIFLKWK R+E Q
Sbjct: 264  ILDYVHSDVWGPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQ 323

Query: 540  TGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCM 719
            TGRKIK  RTDNGGEYTSDPF++ C + GIVRHFTV+ TPQQNGVAERMNRTL+EKVRCM
Sbjct: 324  TGRKIKHFRTDNGGEYTSDPFKKACEESGIVRHFTVKHTPQQNGVAERMNRTLLEKVRCM 383

Query: 720  LSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYH 899
            LSNAGLG+Q WAEAV YA HLINRLPSSAIGGKTPLE W GKP TDYDSL VFG  AYYH
Sbjct: 384  LSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKPATDYDSLHVFGCTAYYH 443

Query: 900  VKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSA 1079
            VKESKL+PRAK+A+FMGI SGVKGYRLWCLE+KK + SRDVTFDE  ML  VT+E     
Sbjct: 444  VKESKLDPRAKKAIFMGIASGVKGYRLWCLETKKTIISRDVTFDESTMLGKVTTE----- 498

Query: 1080 LQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIAVRRPRREI 1259
             Q+   TPKQVE E   + PA ++        + DEEEV  QEP  Q E IA+R+P+R  
Sbjct: 499  -QKKNGTPKQVEFERKIVFPANDEEKTPMVDEESDEEEVHIQEPPQQLESIALRKPKRTT 557

Query: 1260 HKPARFADMVAYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLP 1439
              PAR+ DMV+YA PV  DD+P T+ EAV+  E +KW+ AM EEM+SL++N+TWK+  LP
Sbjct: 558  IMPARYVDMVSYASPVASDDIPTTYIEAVKGSEEDKWRSAMSEEMESLRRNQTWKLANLP 617

Query: 1440 KGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            KGKKAIGCKWV+AKKDGF +K++VRYKARLVAKGY QKEGID
Sbjct: 618  KGKKAIGCKWVYAKKDGFSDKSEVRYKARLVAKGYAQKEGID 659


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  635 bits (1638), Expect = 0.0
 Identities = 307/420 (73%), Positives = 359/420 (85%), Gaps = 4/420 (0%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVA-DSRNEKES 179
            LG LESKGL V +RDG+LK TSG+L+++KG+R+NNLYYYQG+TV+GTAAVA  S ++K++
Sbjct: 381  LGLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLYYYQGSTVVGTAAVATSSSSKKDA 440

Query: 180  EAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEG 359
            EA KLWHMRLG AGEKSLQ LAKQGLLK  KVCKL+FCEHCVL KQ++VKFGT IHNT+G
Sbjct: 441  EATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKG 500

Query: 360  ILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQ 539
            ILDYVHSDVWGP+KTPSLGG++YFVTFIDDFSRRVWV+TMK+KDE+L IFLKWK R+ENQ
Sbjct: 501  ILDYVHSDVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQ 560

Query: 540  TGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCM 719
            TGRKIK+LRTDNGGEY SDPFQ++C + GIVRHF VR+ PQQNGV+E MN+TLVEKVRCM
Sbjct: 561  TGRKIKILRTDNGGEYKSDPFQKICQECGIVRHFIVRKIPQQNGVSEHMNKTLVEKVRCM 620

Query: 720  LSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYH 899
            LSNAGLGR+ WAEAVTYAQHL+NRLPSSAIGGKTPLEVWSGK  TDYDSLR+F S AYYH
Sbjct: 621  LSNAGLGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSGKLATDYDSLRIFDSTAYYH 680

Query: 900  VKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSA 1079
            V ESKL+PRAK+ALFMG ++GVKGYRLW LE+KK + SRDVTFDE  ML  +T + T   
Sbjct: 681  VNESKLDPRAKKALFMGFSAGVKGYRLWYLEAKKTIISRDVTFDESVMLNKITQDGTSGT 740

Query: 1080 LQQVERTPKQVEVEEMAIIPAK---NDNPVTEDLSDDDEEEVQTQEPLDQSEPIAVRRPR 1250
             QQVE TPKQVE E++ + PA    +D+P+ E+  + DEEEV TQEP  Q + IAV R R
Sbjct: 741  PQQVECTPKQVEFEQIVVSPANSTISDSPMAEE--ESDEEEVSTQEPQQQQKSIAVNRAR 798


>emb|CDP17739.1| unnamed protein product [Coffea canephora]
          Length = 435

 Score =  602 bits (1553), Expect = 0.0
 Identities = 287/394 (72%), Positives = 340/394 (86%), Gaps = 4/394 (1%)
 Frame = +3

Query: 39   LRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVA-DSRNEKESEAAKLWHMRLGH 215
            +RDG+LK TSG+LV++KG+R+N LYYYQG+ V+GTAA    S ++K++EA KLWHMRLGH
Sbjct: 1    MRDGILKVTSGALVMLKGVRKNILYYYQGSIVVGTAAATTSSSSKKDAEATKLWHMRLGH 60

Query: 216  AGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGP 395
            AGEKSLQ LAKQGLLK  KVCKL+FCEHCVL KQ++VKFGT IHNT+GILDYVHS+VWGP
Sbjct: 61   AGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSNVWGP 120

Query: 396  SKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDN 575
            +KTPSLGG++YFVTFIDDFSRRVWV+TMK+KDEVL IFLKWK R+ENQTGRKIK+LRTDN
Sbjct: 121  AKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRKIKILRTDN 180

Query: 576  GGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWA 755
            GGEY SDPFQ++  + GIV+HFTVR+TPQQNGV+ERMN+TLVEKV CMLSNA LGR+ WA
Sbjct: 181  GGEYKSDPFQKIGQECGIVQHFTVRKTPQQNGVSERMNKTLVEKVHCMLSNARLGRKFWA 240

Query: 756  EAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHVKESKLEPRAKR 935
            E VTYAQHL+NRLPSSAIGGKTPLEVWSGKP TDYDSLR+F S AYYHV ESKL+PRAK+
Sbjct: 241  ETVTYAQHLVNRLPSSAIGGKTPLEVWSGKPTTDYDSLRIFYSTAYYHVNESKLDPRAKK 300

Query: 936  ALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQVE 1115
            A+FMG+ +GVKGYRLWCLE+KK + SRDVTF+E AML  VT   T    QQVE TPKQVE
Sbjct: 301  AIFMGLNAGVKGYRLWCLEAKKTIISRDVTFNESAMLNKVTQNGTSGTPQQVECTPKQVE 360

Query: 1116 VEEMAIIPAK---NDNPVTEDLSDDDEEEVQTQE 1208
             E++ + PA    +D+P+ E+  + DEEE+ TQ+
Sbjct: 361  FEQIVVSPANSTISDSPMAEE--ESDEEEISTQD 392


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  519 bits (1336), Expect = e-173
 Identities = 258/355 (72%), Positives = 291/355 (81%), Gaps = 3/355 (0%)
 Frame = +3

Query: 471  YTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVR 650
            +TMK K++VL IFLKWK  +ENQTGRKIKVLRTDNGGEY SDPF +VC   GI+RHFT+R
Sbjct: 506  FTMKNKNDVLEIFLKWKDEVENQTGRKIKVLRTDNGGEYKSDPFLKVCQDCGIIRHFTIR 565

Query: 651  RTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLE 830
            +TPQQNGV+ERMN+ LVEKVRCMLSNA LGR+ WAEAVTYAQHL+NRLPSSAI GKTPLE
Sbjct: 566  KTPQQNGVSERMNKILVEKVRCMLSNAELGRKFWAEAVTYAQHLVNRLPSSAIDGKTPLE 625

Query: 831  VWSGKPVTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILF 1010
            VWSGKP TDYDSL VFGS+AYYHV ESKL+PRAK+ALFMG + GVKGYRLWCLE+KK + 
Sbjct: 626  VWSGKPATDYDSLHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEAKKTII 685

Query: 1011 SRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQVEVEEMAIIPAKN---DNPVTEDLSDD 1181
            SRDVTFDE AMLK V  E  DS  QQVE   KQVE E   +IP +N   D+ + E+  + 
Sbjct: 686  SRDVTFDESAMLKKVNPEGADSTPQQVECARKQVEFEPKVVIPTRNTTSDSAMAEE--ES 743

Query: 1182 DEEEVQTQEPLDQSEPIAVRRPRREIHKPARFADMVAYALPVIDDDVPFTFREAVRSPES 1361
            DEEEV TQE   QS PIAVRR RR+I KP+RF DMVAYALPV+ DD+P T+ EA+ S ES
Sbjct: 744  DEEEVPTQESQQQSAPIAVRRQRRDIQKPSRFMDMVAYALPVV-DDIPSTYPEAIMSSES 802

Query: 1362 EKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKAR 1526
              W GAMEEEMQSL+KNKTWK+ QLPKGKKAIGCKWVFAKK+ F NK DVRYKAR
Sbjct: 803  GNWAGAMEEEMQSLKKNKTWKLAQLPKGKKAIGCKWVFAKKEEFSNKEDVRYKAR 857



 Score =  236 bits (602), Expect = 5e-65
 Identities = 107/138 (77%), Positives = 126/138 (91%)
 Frame = +3

Query: 3   LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKESE 182
           LGALESKGL+VT+RDG+LKATSG+LV++KG+ +NNLYYYQG+TV+GT A A S ++K++E
Sbjct: 297 LGALESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAE 356

Query: 183 AAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGI 362
           A KLWHMRLGHAGEKSLQ   KQGLLK  K CKL+FCEHCVLGKQ+RVKFGTAIHNT+GI
Sbjct: 357 ATKLWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGI 416

Query: 363 LDYVHSDVWGPSKTPSLG 416
           LDYVHSDVWGP+KTPS+G
Sbjct: 417 LDYVHSDVWGPAKTPSIG 434


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  518 bits (1334), Expect = e-170
 Identities = 273/536 (50%), Positives = 359/536 (66%), Gaps = 15/536 (2%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKESE 182
            LG LES G   +   GVLK + G++V++K  R  +LY  QG+ V G+AAV+ S ++K+  
Sbjct: 63   LGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKD-- 120

Query: 183  AAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGI 362
            A KLWHMRLGH  EK +  L+KQGLL +  + KL+FCEHCV GKQKRV F TA H T+G 
Sbjct: 121  ATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGT 180

Query: 363  LDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQT 542
            LDY+HSD+WGPSK PS GG  Y +T IDDFSR+VWVY ++ K+E    F KWKT +E QT
Sbjct: 181  LDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQT 240

Query: 543  GRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCML 722
            G+K+K LRTDNG E+    F E C  +GI RH T+   PQQNGVAER+NRT++E+ RCML
Sbjct: 241  GKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQNGVAERLNRTILERARCML 300

Query: 723  SNAGLGRQH--WAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYY 896
            SNAGL  Q   W EA + A +LINR P S++  K P E+WSG P+ DY +LR+FG  AY 
Sbjct: 301  SNAGLWHQRELWVEAASTACYLINRSPHSSLNFKIPEEIWSGNPI-DYSNLRIFGCPAYA 359

Query: 897  HVKESKLEPRAKRALFMGITSGVKGYRLWCLESK--KILFSRDVTFDEHAMLKT-VTSEK 1067
            HV + KL PRA + +F+G  S  KGYRLWC ESK  +++ SRDVTF+E A+L +   S  
Sbjct: 360  HVNDGKLAPRAIKCIFLGYASESKGYRLWCSESKSRRLILSRDVTFNEDALLSSGKQSSV 419

Query: 1068 TDSALQQVERTPKQVEVEEMAIIPAKN--DNPVTEDLSDD--DEEEVQTQEPLDQSEPIA 1235
            + S+   ++ T ++VE+E  ++ P  +   +  TE   DD  D+  +Q QE  +    IA
Sbjct: 420  SSSSTNNLQGTSEKVELELKSVAPNVDVPSSSTTESSIDDHGDDHPIQQQEEYN----IA 475

Query: 1236 VRRPRREIHKPARFAD--MVAYALPV---IDDDV-PFTFREAVRSPESEKWKGAMEEEMQ 1397
              R RR+I  PAR+ D  + AYAL +   ++DDV P ++ EAV   +S KW  AM EE++
Sbjct: 476  RDRTRRQIKLPARYTDDNLTAYALSIAQEVNDDVEPASYSEAVSCVDSAKWLVAMNEEIE 535

Query: 1398 SLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            SL KN TW +T+LPKGK+ + CKW++ KKDG P   D R KARLV KG+ QKEGID
Sbjct: 536  SLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEGID 591


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  513 bits (1320), Expect = e-165
 Identities = 267/529 (50%), Positives = 348/529 (65%), Gaps = 8/529 (1%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKESE 182
            L  L+SKG   + +DGVL+   GS +++KG+ R  LY+ QG+TV G+A VA S   ++ +
Sbjct: 351  LSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQK-D 409

Query: 183  AAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGI 362
              KLWH+RLGH GE+ +Q L+K+ LL   KV  L+FCEHCV GK  R KF  AIH T+G 
Sbjct: 410  MTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGT 469

Query: 363  LDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQT 542
            LDY+HSD WGP +  SLGG  +FV+ IDD+SR  WVY MK K E    F +WK  +ENQT
Sbjct: 470  LDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQT 529

Query: 543  GRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCML 722
            G+KIK LRTDNG E+    F + C   GI RH TVR TPQQNGVAERMN+TL+E+ RCML
Sbjct: 530  GKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCML 589

Query: 723  SNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHV 902
            SNAGL R+ WAEAV+ A +LINR P + I  KTP+E+WSGK   DY +L+ FG  AYYHV
Sbjct: 590  SNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGK-AADYSNLKAFGCTAYYHV 648

Query: 903  KESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSAL 1082
             E KLEPRAK+ +F+G   GVKG+R+W    K+++ SR+V FDE  +L+T+    T S  
Sbjct: 649  SEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSET 708

Query: 1083 QQVERTPKQVEVEEMAIIPAKND--NPVTEDLSDDDEEEVQTQEPLDQSEPIAVRRPRR- 1253
              ++   KQVE +   +I  ++D   P  ED     E ++    P D  + IA  RPRR 
Sbjct: 709  GSLD---KQVEFQ---VIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRV 762

Query: 1254 EIHKPAR--FADMVAYALPV---IDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKT 1418
             +  P R  F DMV YAL V   +D   P T++EA+ S +SEKW  AM +EM+SL KN+T
Sbjct: 763  GVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQT 822

Query: 1419 WKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            W +   P G+K I CKWVF KK+G      V+YKAR+VA+G+ Q+EG+D
Sbjct: 823  WDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVD 871


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  521 bits (1343), Expect = e-165
 Identities = 277/529 (52%), Positives = 353/529 (66%), Gaps = 8/529 (1%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKESE 182
            L  L+ KG   +   GVLK  SG+L V++G     LY+  G++V G A V+ S ++ +S+
Sbjct: 880  LSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSS-DDLDSD 938

Query: 183  AAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGI 362
              KLWHMRLGH  E+ L  L+K+GLL      KL+FCEHCV GKQ RVKF T IH T+G 
Sbjct: 939  TTKLWHMRLGHMSERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGT 998

Query: 363  LDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQT 542
            +DY HSD+WGPS T S GG  Y +TFIDD+SR+VWVY +K+K EVL  F ++K  IENQT
Sbjct: 999  VDYFHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQT 1058

Query: 543  GRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCML 722
            G+KIK  RTDNG E+ S  F E C   GIVRH TVRRTPQQNGVAERMNRTL+E+ RCM 
Sbjct: 1059 GKKIKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVRRTPQQNGVAERMNRTLLERARCMR 1118

Query: 723  SNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHV 902
            SNAGLG + WAEAV  A +L+NR PS+AI  KTP EVWSG P  DY  LRVFG  AY HV
Sbjct: 1119 SNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSP-ADYSGLRVFGCPAYAHV 1177

Query: 903  KESKLEPRAKRALFMGITSGVKGYRLWCLE--SKKILFSRDVTFDEHAMLKTVTS--EKT 1070
             E KL+PRAK+ +F+G   GVKGYRLWC +  S K + SRDVTFDE +ML++ T+  EK 
Sbjct: 1178 NEGKLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDVTFDESSMLRSTTNSREKE 1237

Query: 1071 DSALQQVERTPKQVEVEEMAIIPAKNDNPVTE--DLSDDDEEEVQTQEPLDQSEPIAVRR 1244
            +S         KQVE +  A IP +  +   +  ++ D DE+E   ++P      IA  R
Sbjct: 1238 ESDRMGDHGVEKQVECQVDAPIPTEGTSVQDDQVEVQDSDEDESPQEKPYS----IATGR 1293

Query: 1245 PRREIHKPARFADMVAYALPVIDD--DVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKT 1418
             +R+I    R+A++V++AL V +     P ++ EAV   ES +W  AM EE++SL KN T
Sbjct: 1294 TKRQIKPNPRYANLVSFALSVAESIGIEPSSYNEAVTCDESAQWAIAMSEEIESLHKNHT 1353

Query: 1419 WKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            W++ + P  +K +GCKWVF KK+G       R+KARLVAKG+TQKEGID
Sbjct: 1354 WELVKPPSNQKIVGCKWVFKKKEGILGVEATRFKARLVAKGFTQKEGID 1402


>gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 595

 Score =  486 bits (1252), Expect = e-164
 Identities = 252/514 (49%), Positives = 334/514 (64%), Gaps = 15/514 (2%)
 Frame = +3

Query: 69   GSLVVMKGIRRNNLYYYQGNTVIGTAAV-ADSRNEKE-SEAAKLWHMRLGHAGEKSLQTL 242
            GS +VMKGI+R NLY  QG T +   +V   S+++K+  ++ +LWHMRLGH  E+ + TL
Sbjct: 6    GSTIVMKGIKRGNLYVLQGTTCVNAVSVFVASKSDKDIPDSTQLWHMRLGHMSERGMMTL 65

Query: 243  AKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGGK 422
             KQ LL + K+ +L FCEHCV GKQ R+KF   +H T+G LDY+H+D WGPS+  SLGG 
Sbjct: 66   QKQKLLGNQKLNELKFCEHCVFGKQHRIKFPKVVHTTKGTLDYIHADCWGPSRVLSLGGG 125

Query: 423  HYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDPF 602
             YF++ IDD+SR  W+Y +  K++    F +WK  +ENQTG+KIK  RT+NG E+ S  F
Sbjct: 126  RYFLSIIDDYSRMTWIYIISHKNQAFRYFKEWKALMENQTGKKIKRFRTNNGLEFCSAEF 185

Query: 603  QEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQHL 782
               C   GIVR  TVR TPQQNGVAERMN+TL+E+ RC+LSNA  G   W EAV     L
Sbjct: 186  NTFCKDKGIVRQLTVRNTPQQNGVAERMNKTLLERTRCLLSNAE-GVTFWGEAVNTTCFL 244

Query: 783  INRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITSG 962
            INR PS+AI  KTP+E+W+GKP T+Y +LRVFG  AYYHV E KL PR+++ LFMG   G
Sbjct: 245  INRTPSTAISLKTPIEIWTGKP-TNYSNLRVFGCNAYYHVNEGKLLPRSRKCLFMGYGDG 303

Query: 963  VKGYRLWCLESKKILFSRDVTFDE----HAMLK---TVTSEKTDSALQQVERTPKQVEVE 1121
            VKGYR+W    KK++ SRDV FDE    H  L+   T T       + +VE   ++ E +
Sbjct: 304  VKGYRIWSPSEKKVILSRDVIFDESHLFHPKLEVPITATHNSHPPQVGKVESISEKTEDK 363

Query: 1122 EMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLD-QSEPIAVRRPRREIHKPAR--FADMVA 1292
            ++    ++      +  +    E  Q  EP   Q  P   ++P+R I  P R  F DM  
Sbjct: 364  DLLDKFSEASQEEEQSENSSANESHQNAEPDSIQLNPGISQKPKRVIKPPERYGFEDMAT 423

Query: 1293 YALPV---IDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGC 1463
            YAL     ID D P T++EA+  PE+EKW  AM EEM+SL KN+TWK+ +LPKG+  +GC
Sbjct: 424  YALHAAEEIDSDEPTTYKEAISHPEAEKWILAMREEMESLYKNQTWKLVELPKGRHVVGC 483

Query: 1464 KWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            KW++ KK  F  K ++RYKARLVAKG++QKEG+D
Sbjct: 484  KWIYKKKSIFSEKEEIRYKARLVAKGFSQKEGVD 517


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  521 bits (1343), Expect = e-163
 Identities = 277/529 (52%), Positives = 353/529 (66%), Gaps = 8/529 (1%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKESE 182
            L  L+ KG   +   GVLK  SG+L V++G     LY+  G++V G A V+ S ++ +S+
Sbjct: 859  LSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSS-DDLDSD 917

Query: 183  AAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGI 362
              KLWHMRLGH  E+ L  L+K+GLL      KL+FCEHCV GKQ RVKF T IH T+G 
Sbjct: 918  TTKLWHMRLGHMSERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGT 977

Query: 363  LDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQT 542
            +DY HSD+WGPS T S GG  Y +TFIDD+SR+VWVY +K+K EVL  F ++K  IENQT
Sbjct: 978  VDYFHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQT 1037

Query: 543  GRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCML 722
            G+KIK  RTDNG E+ S  F E C   GIVRH TVRRTPQQNGVAERMNRTL+E+ RCM 
Sbjct: 1038 GKKIKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVRRTPQQNGVAERMNRTLLERARCMR 1097

Query: 723  SNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHV 902
            SNAGLG + WAEAV  A +L+NR PS+AI  KTP EVWSG P  DY  LRVFG  AY HV
Sbjct: 1098 SNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSP-ADYSGLRVFGCPAYAHV 1156

Query: 903  KESKLEPRAKRALFMGITSGVKGYRLWCLE--SKKILFSRDVTFDEHAMLKTVTS--EKT 1070
             E KL+PRAK+ +F+G   GVKGYRLWC +  S K + SRDVTFDE +ML++ T+  EK 
Sbjct: 1157 NEGKLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDVTFDESSMLRSTTNSREKE 1216

Query: 1071 DSALQQVERTPKQVEVEEMAIIPAKNDNPVTE--DLSDDDEEEVQTQEPLDQSEPIAVRR 1244
            +S         KQVE +  A IP +  +   +  ++ D DE+E   ++P      IA  R
Sbjct: 1217 ESDRMGDHGVEKQVECQVDAPIPTEGTSVQDDQVEVQDSDEDESPQEKPYS----IATGR 1272

Query: 1245 PRREIHKPARFADMVAYALPVIDD--DVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKT 1418
             +R+I    R+A++V++AL V +     P ++ EAV   ES +W  AM EE++SL KN T
Sbjct: 1273 TKRQIKPNPRYANLVSFALSVAESIGIEPSSYNEAVTCDESAQWAIAMSEEIESLHKNHT 1332

Query: 1419 WKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            W++ + P  +K +GCKWVF KK+G       R+KARLVAKG+TQKEGID
Sbjct: 1333 WELVKPPSNQKIVGCKWVFKKKEGILGVEATRFKARLVAKGFTQKEGID 1381


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  504 bits (1297), Expect = e-163
 Identities = 267/533 (50%), Positives = 349/533 (65%), Gaps = 12/533 (2%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKE 176
            L  L+ KG   +  DG+LK T GSLVVMK  I+  NLY+ +G T++G  AAV+DS +   
Sbjct: 281  LCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSN-- 338

Query: 177  SEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTE 356
            S+A  LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TE
Sbjct: 339  SDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE 398

Query: 357  GILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIEN 536
            GILDYVHSD+WGP++  S GG  Y +T +DD+SR+VW Y +K K +   +F +WKT +E 
Sbjct: 399  GILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 458

Query: 537  QTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRC 716
            QT RK+K+LRTDNG E  S  F+  C   GIVRH+TV  TPQQNGVAERMNRT++ K RC
Sbjct: 459  QTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARC 518

Query: 717  MLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYY 896
            MLSNA L +Q WAEAV+ A +LINR PS AI  KTP+EVWSG P  +Y  LRVFG  AY 
Sbjct: 519  MLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP-ANYSDLRVFGCTAYA 577

Query: 897  HVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDS 1076
            HV   KLEPR  + +F+G  SGVKGY+LWC E+KK++ SR+V F E  ML    S  T+ 
Sbjct: 578  HVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPS--TNV 635

Query: 1077 ALQQVERTPKQVE-VEEMAIIPAKNDNPVTED--LSDDDEEEVQTQEPLDQSEPIAVRRP 1247
             ++  E+   QVE +      P K D  + +D  + +D +  +  Q P      IA  RP
Sbjct: 636  PVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSP---KRSIAKDRP 692

Query: 1248 RREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQSLQ 1406
            +R    P R+   A++VAYAL V ++      P T+ +A+ S +  +W  AM +EM+SL+
Sbjct: 693  KRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLE 752

Query: 1407 KNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            KN +W++ +LPK KK I CKW+F +K+G    ++ RYKARLVAKGY+Q  GID
Sbjct: 753  KNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 805


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  490 bits (1261), Expect = e-161
 Identities = 265/538 (49%), Positives = 348/538 (64%), Gaps = 17/538 (3%)
 Frame = +3

Query: 3    LGALESKGLIVTL-RD-GVLKATSGSLVVMKGIRR-NNLYYYQGNTVIGTAAVADSRNEK 173
            LG L+  G      RD  +LK + G+L VM+  R   N+Y   GNTV+G  A  +S N+ 
Sbjct: 281  LGTLQENGYSYRSDRDRDILKVSKGALTVMRVKRTAGNIYKLLGNTVVGDVASVESDND- 339

Query: 174  ESEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNT 353
               A KLWH+RLGH  E+ +  L K+ LLK V  CK+D C++CVLGKQ RV+F    H T
Sbjct: 340  ---ATKLWHLRLGHLSERGMMELHKRSLLKGVCSCKMDLCKYCVLGKQCRVRFKPMKHKT 396

Query: 354  EGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIE 533
            EGILDYVHSDVWGP++  S+GG  YFVTF DDFSR++WVY MK K EV   F  WK  +E
Sbjct: 397  EGILDYVHSDVWGPTREASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVE 456

Query: 534  NQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVR 713
            NQTGRKIK LR+DNG EYT+  F++ C ++GI RHF+VR+TPQQNGVAERMN +L E+ R
Sbjct: 457  NQTGRKIKYLRSDNGTEYTNSQFEKFCEQHGIQRHFSVRKTPQQNGVAERMNMSLTERAR 516

Query: 714  CMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAY 893
            C+   AGL +  WAE +  A +LINR P +++ GK   EVW+GKP+ D D+LR+FG   +
Sbjct: 517  CLQLKAGLSKGFWAETINMACYLINRSPRASLEGKVAEEVWTGKPI-DLDNLRIFGCPTF 575

Query: 894  YHVK---ESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLK-TVTS 1061
             H+     SKL+P++K+ +F+G + GVKG++LW   SKK++ SRDV FDE  MLK +  +
Sbjct: 576  VHISSEDRSKLDPKSKKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQFMLKQSRET 635

Query: 1062 EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSE----- 1226
            E T+SA     +   QVE+E     P KN + V +   +       T +    SE     
Sbjct: 636  EVTESAGGSSGKEVIQVELEP---TPNKNTSAVHQQPPEPTPINHDTADSGGASEDSVGV 692

Query: 1227 ---PIAVRRPRREIHKPAR--FADMVAYALPVIDDDVPFTFREAVRSPESEKWKGAMEEE 1391
                +A  R RR I+ P R  F D+ AYAL     D P TFREA+ S E +KW GAM EE
Sbjct: 693  DDYQLARDRERRSINPPQRYGFEDLAAYALLTSSGD-PSTFREAIVSQEKDKWMGAMMEE 751

Query: 1392 MQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            M+SLQKN+TW++ QLP GK+ IGCKWV+ +K     K   ++KARLVAKGY+Q++GID
Sbjct: 752  MESLQKNQTWELVQLPMGKRTIGCKWVYKRKSAVTEKEGEKFKARLVAKGYSQQKGID 809


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  514 bits (1323), Expect = e-160
 Identities = 271/535 (50%), Positives = 347/535 (64%), Gaps = 14/535 (2%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKE 176
            L  L+ KG   +  DG+LK T GSLVVMK  I+  NLY+ +G T++G  AAV+DS +   
Sbjct: 579  LCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSN-- 636

Query: 177  SEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTE 356
            S+A  LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TE
Sbjct: 637  SDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE 696

Query: 357  GILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIEN 536
            GILDYVHSD+WGP++  S GG  Y +T +DD+SR+VW Y +K K +   +F +WKT +E 
Sbjct: 697  GILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 756

Query: 537  QTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRC 716
            QT RK+K+LRTDNG E+ S  F+  C   GIVRH+TV  TPQQNGVAERMNRT++ K RC
Sbjct: 757  QTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARC 816

Query: 717  MLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYY 896
            +LSNAGL +Q WAEAV+ A +LINR PS AI  KTP+EVWSG P  +Y  LRVFG  AY 
Sbjct: 817  LLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP-ANYSDLRVFGCTAYA 875

Query: 897  HVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-----KTVTS 1061
            HV   KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F E  ML       V  
Sbjct: 876  HVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPV 935

Query: 1062 EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIAVR 1241
            E  + A  QVE         E   +    D PV E    D    +  Q P      IA  
Sbjct: 936  ESQEKASVQVEHLISSGHAPEKEDVAINQDEPVIE----DSNSSIVQQSP---KRSIAKD 988

Query: 1242 RPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQS 1400
            RP+R I  P R+   A++VAYAL V ++      P T+ EA+ S +  +W  AM +EM+S
Sbjct: 989  RPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMES 1048

Query: 1401 LQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            L+KN TW++ +LPK KK I CKW+F +K+G  + ++ RYKARL+AKGY+Q  GID
Sbjct: 1049 LEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGID 1103


>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 634

 Score =  477 bits (1227), Expect = e-159
 Identities = 254/537 (47%), Positives = 343/537 (63%), Gaps = 16/537 (2%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKESE 182
            LG L+  G       G L+   GSLV++KG+R+N LYY    +++G   VA S N   S 
Sbjct: 14   LGTLDQGGYAYKCDQGSLRVFKGSLVILKGVRKNWLYY----SLVGQTVVARSSNVIGSS 69

Query: 183  --------AAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGT 338
                    A KLWH RLGH  ++ L  LAKQG+    K+  L+FCEHCV+GK  R+KF T
Sbjct: 70   NATITSDVATKLWHHRLGHVSQRGLDELAKQGVFGRDKIEPLEFCEHCVMGKASRLKFST 129

Query: 339  AIHNTEGILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKW 518
            + H++ G+LDYVHSD+WGPS+T S GG  YF++ +DDFSR+VWVY +K K+EV   F +W
Sbjct: 130  STHSSGGVLDYVHSDLWGPSRTESHGGARYFLSIVDDFSRKVWVYFLKQKNEVFDRFKEW 189

Query: 519  KTRIENQTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTL 698
            K  +E QTGR +K LRTDNG E+  + F + C + G+ RH TVR TPQ+NG+AER NRT+
Sbjct: 190  KVLVETQTGRNLKKLRTDNGLEFCDEKFSKFCRENGVARHKTVRGTPQKNGLAERFNRTI 249

Query: 699  VEKVRCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVF 878
            +E+VRCML++AGL +  W EAV+ A + INR PS+A+  KTP EVWSG+ V DY  LRVF
Sbjct: 250  LERVRCMLNHAGLPKSFWVEAVSSAVYCINRCPSTALEFKTPQEVWSGRKV-DYSELRVF 308

Query: 879  GSLAYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLES--KKILFSRDVTFDEHAMLKT 1052
            G +AY H+K+ KLEPRA + +F+G   GVKGYRLWCLE   KK L SRDV F+E  M   
Sbjct: 309  GCIAYAHIKQDKLEPRALKFIFIGYPEGVKGYRLWCLEPGYKKCLISRDVVFNEIEMANL 368

Query: 1053 VTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPI 1232
            V   K +   +  ++T K +EVE   I  AK     T+      ++E+  +E   QS  +
Sbjct: 369  VKPSKVEIHEKSQDQTIK-IEVEFTVITEAK---AATQRQQHILQQELDDEERSIQSYSL 424

Query: 1233 AVRRPRREIHKPARF--ADMVAYA----LPVIDDDVPFTFREAVRSPESEKWKGAMEEEM 1394
            A  R RR    P R+  AD+V++A    L + D D P ++ EA+RS +   W  AM+EEM
Sbjct: 425  ARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKDKNSWLKAMKEEM 484

Query: 1395 QSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
             SL+KN+TW +   PK +K +G KW+F +K G       R+K RLVA+G+TQ+EG+D
Sbjct: 485  GSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGILGIEKARFKERLVARGFTQREGLD 541


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  494 bits (1271), Expect = e-159
 Identities = 262/518 (50%), Positives = 339/518 (65%), Gaps = 12/518 (2%)
 Frame = +3

Query: 48   GVLKATSGSLVVMK-GIRRNNLYYYQGNTVIGT-AAVADSRNEKESEAAKLWHMRLGHAG 221
            G+LK T GSLVVMK  I+  NLY+ +G T++G  AAV DS +   S+A  LWHMRLGH  
Sbjct: 359  GILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSN--SDATNLWHMRLGHMS 416

Query: 222  EKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSK 401
            E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TEGILDYVHSD+WGP+ 
Sbjct: 417  EIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAH 476

Query: 402  TPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGG 581
              S GG  Y +T +DD+SR+VW Y +K K +    F +WKT +E QT RK+K+LRTDNG 
Sbjct: 477  KTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGM 536

Query: 582  EYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEA 761
            E+ S  F+  C   GIV H+T   TPQQN VAERMNRT++ K RCMLSNAGL +Q WAEA
Sbjct: 537  EFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEA 596

Query: 762  VTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHVKESKLEPRAKRAL 941
            V+ A +LINR P  AI  KTP+EVWSG P T+Y  LRVFG  AY HV   KLEPRA + +
Sbjct: 597  VSTACYLINRSPGYAIDKKTPIEVWSGSP-TNYSDLRVFGCTAYAHVDNGKLEPRAIKCI 655

Query: 942  FMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQVE-V 1118
            F+G  SGVKGY+LWC E+KK++ SR+V F E  +L    S  T+  ++  E+   QVE +
Sbjct: 656  FLGYASGVKGYKLWCPETKKVVISRNVVFHESVILHDKPS--TNVPVESQEKASVQVEHL 713

Query: 1119 EEMAIIPAKNDNPVTED--LSDDDEEEVQTQEPLDQSEPIAVRRPRREIHKPARF---AD 1283
                  P K D  + +D  + +D +  +  Q P      IA  +P+R I  P R+   A 
Sbjct: 714  ISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSP---KRSIAKDKPKRNIKPPRRYIEEAK 770

Query: 1284 MVAYALPVID----DDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKK 1451
            +VAYAL V +    +  P T+ EA+ S +  +W  AM +EM+SL+KN TW++ +LPK KK
Sbjct: 771  IVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKK 830

Query: 1452 AIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
             I CKW+F +K+G    ++ RYKARLVAKGY+Q  GID
Sbjct: 831  PIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 868


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  491 bits (1265), Expect = e-158
 Identities = 264/535 (49%), Positives = 337/535 (62%), Gaps = 14/535 (2%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKE 176
            L  L+ KG   +  DG+LK T GSLVVMK  I+  NLY+ +G T++G  AAV+DS +   
Sbjct: 407  LCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSN-- 464

Query: 177  SEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTE 356
            S+A  LWHMRLGH  E  L  L+K+ LL    + KL FCEHC+ GK KRVKF T+ H TE
Sbjct: 465  SDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE 524

Query: 357  GILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIEN 536
            GILDYVHSD+WGP+   S GG  Y +T +DD+SR+VW Y +K K +   +F +WKT +E 
Sbjct: 525  GILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 584

Query: 537  QTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRC 716
            QT +K+K+LRTDNG E+ S  F+  C   GIV H+TV  TPQQNGVAERMN  ++ K RC
Sbjct: 585  QTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARC 644

Query: 717  MLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYY 896
            MLSNA L +Q WAEAV+   +LINR PS A   KTP+EVWSG P  +Y  LRVFG  AY 
Sbjct: 645  MLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSP-ANYSDLRVFGCTAYA 703

Query: 897  HVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-----KTVTS 1061
            HV   KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F E  +L       V  
Sbjct: 704  HVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPV 763

Query: 1062 EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIAVR 1241
            E  + A  QVE         E   +    D PV E   D D   VQ          IA  
Sbjct: 764  ESQEKASVQVEHLISSGHAPEKENVAINQDAPVIE---DSDSSIVQQ----SSKRSIAKD 816

Query: 1242 RPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQS 1400
            +P+R I  P R+   A++VAYAL V ++      P T+ EA+ S +  +W  AM +EM+S
Sbjct: 817  KPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMES 876

Query: 1401 LQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            L+KN TW+  +LPK KK I CKW+F +K+G    ++ RYKARLVAKGY+Q  GID
Sbjct: 877  LKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 931


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  491 bits (1265), Expect = e-157
 Identities = 264/535 (49%), Positives = 337/535 (62%), Gaps = 14/535 (2%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKE 176
            L  L+ KG   +  DG+LK T GSLVVMK  I+  NLY+ +G T++G  AAV+DS +   
Sbjct: 407  LCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSN-- 464

Query: 177  SEAAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTE 356
            S+A  LWHMRLGH  E  L  L+K+ LL    + KL FCEHC+ GK KRVKF T+ H TE
Sbjct: 465  SDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE 524

Query: 357  GILDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIEN 536
            GILDYVHSD+WGP+   S GG  Y +T +DD+SR+VW Y +K K +   +F +WKT +E 
Sbjct: 525  GILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVER 584

Query: 537  QTGRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRC 716
            QT +K+K+LRTDNG E+ S  F+  C   GIV H+TV  TPQQNGVAERMN  ++ K RC
Sbjct: 585  QTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARC 644

Query: 717  MLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYY 896
            MLSNA L +Q WAEAV+   +LINR PS A   KTP+EVWSG P  +Y  LRVFG  AY 
Sbjct: 645  MLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSP-ANYSDLRVFGCTAYA 703

Query: 897  HVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-----KTVTS 1061
            HV   KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F E  +L       V  
Sbjct: 704  HVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTNVPV 763

Query: 1062 EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIAVR 1241
            E  + A  QVE         E   +    D PV E   D D   VQ          IA  
Sbjct: 764  ESQEKASVQVEHLISSGHAPEKENVAINQDAPVIE---DSDSSIVQQ----SSKRSIAKD 816

Query: 1242 RPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQS 1400
            +P+R I  P R+   A++VAYAL V ++      P T+ EA+ S +  +W  AM +EM+S
Sbjct: 817  KPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMES 876

Query: 1401 LQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYTQKEGID 1565
            L+KN TW+  +LPK KK I CKW+F +K+G    ++ RYKARLVAKGY+Q  GID
Sbjct: 877  LKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 931


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
 gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  488 bits (1257), Expect = e-157
 Identities = 257/507 (50%), Positives = 333/507 (65%), Gaps = 14/507 (2%)
 Frame = +3

Query: 45   DGVLKATSGSLVVMKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKESEAAKLWHMRLGHA 218
            DG+LK T GSLVVMK  I+  NLY+ +G T++G  AAV+DS +   S+A  LWHMRLGH 
Sbjct: 347  DGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSN--SDATNLWHMRLGHM 404

Query: 219  GEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPS 398
             E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TEGILDYVHSD+WGP+
Sbjct: 405  SEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 464

Query: 399  KTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNG 578
            +  S GG  Y +T +DD+SR+VW Y +K K +   +F +WKT +E QT RK+K+LRTDNG
Sbjct: 465  RKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 524

Query: 579  GEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAE 758
             ++ S  F+  C   GIVRH+TV  TPQQNGVAERMNRT++ K RCMLSNAGL +Q WAE
Sbjct: 525  MDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAE 584

Query: 759  AVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHVKESKLEPRAKRA 938
            AV+ A +LINR PS AI  KTP++VWSG P  +Y  LRVFG +AY HV  SKLEPRA + 
Sbjct: 585  AVSTACYLINRSPSYAIDKKTPIKVWSGSP-ANYSDLRVFGCIAYAHVDNSKLEPRAIKC 643

Query: 939  LFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-----KTVTSEKTDSALQQVERTP 1103
            +F+G  SGVKGY+LWC E+KK++ SR+V F E  ML       V  E  + A  QVE   
Sbjct: 644  IFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLI 703

Query: 1104 KQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIAVRRPRREIHKPARF-- 1277
                  E   +    D PV E    D +  +  Q P      IA  +P+R I  P R+  
Sbjct: 704  SSGHAPEKENVAINLDAPVIE----DSDSSIVQQSP---KHSIAKDKPKRNIKPPRRYIE 756

Query: 1278 -ADMVAYALPV---IDDDV-PFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPK 1442
             A++VAYAL V   I+ +V P T+ +A+ S +  +W  AM +EM+SL+KN TW++ +LPK
Sbjct: 757  EANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 816

Query: 1443 GKKAIGCKWVFAKKDGFPNKNDVRYKA 1523
             KK I CKW+F +K+G    ++ RYKA
Sbjct: 817  EKKPIRCKWIFKRKEGMSPSDEARYKA 843


>gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 507

 Score =  464 bits (1193), Expect = e-156
 Identities = 243/507 (47%), Positives = 326/507 (64%), Gaps = 14/507 (2%)
 Frame = +3

Query: 69   GSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKES---EAAKLWHMRLGHAGEKSLQT 239
            GS VVM+G ++ NLY  QG+T    +++++S +  E    +   LWHMRLGH  E+ +  
Sbjct: 6    GSTVVMRGFKKGNLYMLQGST----SSISESVSVAEKNIPDLTYLWHMRLGHMSERGMMI 61

Query: 240  LAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSKTPSLGG 419
            L++Q LL +  V +L FCEHCV GKQ R+KF  A H+T+  LDY+HSD WGPS+ PSLGG
Sbjct: 62   LSRQQLLGNHTVKELRFCEHCVFGKQHRIKFPKAQHSTKSTLDYIHSDCWGPSQVPSLGG 121

Query: 420  KHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGGEYTSDP 599
              YF++ IDD+SR  W++  K K++    F +WK  +E QT +++K LRTDNG E+ S  
Sbjct: 122  GRYFLSIIDDYSRMTWIFITKHKNQAFKCFKEWKILMEKQTSKRVKRLRTDNGLEFCSKE 181

Query: 600  FQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEAVTYAQH 779
            F + C   GI R +TVR TPQQNGVAERMNRTL+E+ RC+LSNAGL R  WAEAV+   +
Sbjct: 182  FNDYCKAEGIARQYTVRNTPQQNGVAERMNRTLLERARCLLSNAGLSRSFWAEAVSTTCY 241

Query: 780  LINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHVKESKLEPRAKRALFMGITS 959
            LINR PS+ I  KTP+EVWS KP  +Y  LRVFG  AYYHV E KLEPR+K+ LFMG   
Sbjct: 242  LINRSPSTIIDCKTPIEVWSNKP-ANYSLLRVFGCNAYYHVNEGKLEPRSKKGLFMGYGD 300

Query: 960  GVKGYRLWCLESKKILFSRDVTFDE----HAMLKTVTSEKTDSALQQVE--RTPKQVEVE 1121
            GVKGYR+W    +K++ SRDV FDE    +  L+   S K    L+QVE  +T   +  E
Sbjct: 301  GVKGYRIWSPAERKVILSRDVIFDESHLFYPSLEFTVSGKNQKILKQVEDGKTSGSILDE 360

Query: 1122 EMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIAVRRPRREIHKPAR--FADMVAY 1295
            E +    +        + D D    Q      Q +  A ++P+R  + P R  F DM+AY
Sbjct: 361  EKSEDFNEESQQQQFRVDDSDPSSPQGSSLQTQYDTEAYQKPKRISNPPVRYGFEDMMAY 420

Query: 1296 ALPV---IDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCK 1466
            AL V   +D   P T++EA+   E++KW  AM+EEM+SLQKN+TWK+ + PKG+  +G K
Sbjct: 421  ALHVAEEVDTTEPATYKEAMDHAEADKWILAMKEEMESLQKNQTWKLVKFPKGRHVVGRK 480

Query: 1467 WVFAKKDGFPNKNDVRYKARLVAKGYT 1547
            W+F +K G P    +RYKARLVAKG++
Sbjct: 481  WIFKRKLGIPGVEPLRYKARLVAKGFS 507


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  491 bits (1264), Expect = e-155
 Identities = 259/535 (48%), Positives = 343/535 (64%), Gaps = 20/535 (3%)
 Frame = +3

Query: 3    LGALESKGLIVTLRDGVLKATSGSLVVMKGIRRNNLYYYQGNTVIGTAAVADSRNEKESE 182
            +G L+  G   +   GVL+ + G+LVVMKG  ++ +Y   G++V+GTAAV      +E  
Sbjct: 690  VGTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQHGIYTLMGSSVLGTAAV------EEDN 743

Query: 183  AAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGI 362
              +LWH RLGH  EK L  L+KQGLL   +  KL FCE CV+GKQ+RVKF    H T G+
Sbjct: 744  CTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGV 803

Query: 363  LDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQT 542
            L+Y+HSD+WGPS   S  G  Y+VTFIDDFSR+VWVY +K KDEV G F +WKT +E +T
Sbjct: 804  LEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRT 863

Query: 543  GRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCML 722
            G+ +K LRTDNG E+ +  F E C K GIVRH TVR TPQQNGVAERMN+TLV++ RCM 
Sbjct: 864  GKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMR 923

Query: 723  SNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAYYHV 902
             +AGL ++ WAEAV  A +L+NR PS+AI  KTP EVWSGKP ++Y  L++FG  AY HV
Sbjct: 924  IDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKP-SNYSGLKIFGCPAYAHV 982

Query: 903  KESKLEPRAKRALFMGITSGVKGYRLWCLESK--KILFSRDVTFDEHAML-------KTV 1055
             + KLEPRA + +F+G  +GVKGYRLWC E +  K + SRDVTFDE AM           
Sbjct: 983  SDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLA 1042

Query: 1056 TSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIA 1235
             + KTD    Q      +VE E    + A  +N V      DD  E Q     + S+ IA
Sbjct: 1043 GTSKTDLGANQ------KVEFE----VDAPMENGV------DDTSEEQPVIDQNDSQSIA 1086

Query: 1236 VRRPRREIHKPARFADM--------VAYALPVIDD---DVPFTFREAVRSPESEKWKGAM 1382
              RPRREI +P R+ D         VA+AL V ++   + P +++EA+ S +S+KW  +M
Sbjct: 1087 AXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSM 1146

Query: 1383 EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYT 1547
            ++EM SL+KN+TW++  LP+G K + CKW+F  KDG       +YK+RLVAK ++
Sbjct: 1147 DDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDEPPKYKSRLVAKVFS 1201