BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00019900
         (601 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX80974.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   259   8e-84
gb|PNX58252.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   244   9e-78
gb|KYP45930.1| Retrotransposable element Tf2, partial [Cajanus c...   244   1e-76
gb|PNX86534.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   230   1e-69
gb|AAO23078.1| polyprotein [Glycine max]                              199   3e-55
gb|KYP49340.1| Retrotransposable element Tf2 [Cajanus cajan]          192   5e-54
gb|PNY16671.1| retrotransposon-related protein, partial [Trifoli...   195   6e-54
dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subt...   194   8e-54
ref|XP_015385037.1| PREDICTED: uncharacterized protein LOC107176...   194   1e-53
gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   193   2e-53
gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   193   3e-53
ref|XP_024038299.1| uncharacterized protein LOC112097344 [Citrus...   191   2e-52
dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subt...   189   6e-52
gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...   188   1e-51
dbj|GAU19157.1| hypothetical protein TSUD_79800 [Trifolium subte...   188   2e-51
gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trif...   187   2e-51
dbj|GAU44596.1| hypothetical protein TSUD_187860 [Trifolium subt...   187   2e-51
gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   187   4e-51
gb|PNX93307.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   182   5e-51
dbj|GAU41241.1| hypothetical protein TSUD_97760 [Trifolium subte...   186   9e-51

>gb|PNX80974.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 313

 Score =  259 bits (663), Expect = 8e-84
 Identities = 122/199 (61%), Positives = 153/199 (76%)
 Frame = +3

Query: 3   LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
           LGFQFRIEYKPG SN VADALSRVP +  +      + F ALV+TP F  ++QL+ EN+ 
Sbjct: 108 LGFQFRIEYKPGASNRVADALSRVPGEWSEADSPPDTSFMALVTTPTFGIVQQLQKENAS 167

Query: 183 DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
           DPFL     +H +GILP  YS+++GL+  +GRYV++  S L  +++ EFH TPSGGHAG+
Sbjct: 168 DPFLLAFHQQHTEGILPIPYSIINGLVLHKGRYVLNSASPLCSLIISEFHATPSGGHAGI 227

Query: 363 KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
           KRTL R+AANF+W  MR +V  ++A CL+CQQIKYSTQ PAGLLQPLPIP AVWED+TMD
Sbjct: 228 KRTLTRVAANFFWQGMRKSVEDFVASCLMCQQIKYSTQVPAGLLQPLPIPEAVWEDITMD 287

Query: 543 FITGLPPSKGFSVIMVVVD 599
           FITGLPPS+G +V+ VVVD
Sbjct: 288 FITGLPPSQGSTVVFVVVD 306


>gb|PNX58252.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 323

 Score =  244 bits (624), Expect = 9e-78
 Identities = 123/201 (61%), Positives = 148/201 (73%), Gaps = 2/201 (0%)
 Frame = +3

Query: 3   LGFQFRIEYKPGKSNLVADALSRVPLQEE--DISPAIRSEFFALVSTPVFNFLEQLKLEN 176
           LGFQFRIEYK G SN VADALSRVP      + +PA+R    ALVS+P +  + QL+ +N
Sbjct: 83  LGFQFRIEYKSGASNKVADALSRVPADWPACEHTPALR----ALVSSPTYGIITQLQKDN 138

Query: 177 SQDPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHA 356
           + D F Q    +  QG+L   Y++V+G+L   GRYV+ P S L   ++ EFHDTPSGGHA
Sbjct: 139 ASDSFYQTFHEQQAQGLLRYPYTIVNGVLLHAGRYVLKPTSPLCSTVISEFHDTPSGGHA 198

Query: 357 GVKRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVT 536
           GVKRTLVR+AANFYW  MR  V +++  CL CQQIKYSTQ PAGLLQPLPIP  VWEDVT
Sbjct: 199 GVKRTLVRVAANFYWSGMRKAVENFVGACLTCQQIKYSTQVPAGLLQPLPIPETVWEDVT 258

Query: 537 MDFITGLPPSKGFSVIMVVVD 599
           MDFITGLPPS+G +VI+VVVD
Sbjct: 259 MDFITGLPPSQGSTVILVVVD 279


>gb|KYP45930.1| Retrotransposable element Tf2, partial [Cajanus cajan]
          Length = 392

 Score =  244 bits (623), Expect = 1e-76
 Identities = 120/189 (63%), Positives = 140/189 (74%)
 Frame = +3

Query: 3   LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
           +GF  RIEYK G SN V DALSRVP  ++D +  + S F ALVS PVF  ++QLK EN  
Sbjct: 204 MGFTIRIEYKSGSSNSVVDALSRVPATQDDNATTLPSIFLALVSGPVFQIIDQLKQENLT 263

Query: 183 DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
           DPFLQ+   KHQ G L   YSV  GLL F GRY ISP S+L  V + EF+DTPSGGHAG+
Sbjct: 264 DPFLQSFHFKHQHGNLLFPYSVRQGLLIFHGRYEISPTSSLCTVFINEFYDTPSGGHAGI 323

Query: 363 KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
           KRTL  L++ FYWP MR  V ++ A+CLLCQQ+KYSTQAP GLLQPLPIP A+WED+TMD
Sbjct: 324 KRTLSWLSSIFYWPKMRQVVANHNAQCLLCQQVKYSTQAPTGLLQPLPIPEAIWEDITMD 383

Query: 543 FITGLPPSK 569
           FI GLPPSK
Sbjct: 384 FIIGLPPSK 392


>gb|PNX86534.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 544

 Score =  230 bits (587), Expect = 1e-69
 Identities = 110/190 (57%), Positives = 141/190 (74%)
 Frame = +3

Query: 30  KPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQDPFLQNLQS 209
           K G SN VADALSRVP  +   + +      +LV+TP F  + QL+ EN+ DPFL +  +
Sbjct: 1   KSGASNKVADALSRVPDADSAATSSDSPLLLSLVTTPTFGIVHQLQKENASDPFLLDFHN 60

Query: 210 KHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGVKRTLVRLAA 389
           +H QG L   ++V +GLL  +GRYV++  S +  +++ EFHDTPSGGHAGVKRTL R+AA
Sbjct: 61  QHSQGTLELPFTVANGLLLHKGRYVVNSASPICSIIISEFHDTPSGGHAGVKRTLARVAA 120

Query: 390 NFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMDFITGLPPSK 569
           +FYW  MR +V +++A CL+CQQIKY+TQ PAGLLQPLPIP AVWED+TMDFITGLPPS 
Sbjct: 121 SFYWQGMRKSVENFVASCLVCQQIKYATQVPAGLLQPLPIPEAVWEDITMDFITGLPPSH 180

Query: 570 GFSVIMVVVD 599
           G +VI VVVD
Sbjct: 181 GSTVIFVVVD 190


>gb|AAO23078.1| polyprotein [Glycine max]
          Length = 1552

 Score =  199 bits (505), Expect = 3e-55
 Identities = 103/199 (51%), Positives = 127/199 (63%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            LG+ F+IEYKPGK N  ADALSR+              F    S P   FLE+L+     
Sbjct: 984  LGYDFKIEYKPGKDNQAADALSRM--------------FMLAWSEPHSIFLEELRARLIS 1029

Query: 183  DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
            DP L+ L   ++QG   S Y+V  GLL+++ R VI  E  ++  +L+E+H +P GGHAG+
Sbjct: 1030 DPHLKQLMETYKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHAGI 1089

Query: 363  KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
             RTL RL A FYWP M+  V +YI KCL+CQQ K +   PAGLLQPLPIP  VWEDV MD
Sbjct: 1090 TRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMD 1149

Query: 543  FITGLPPSKGFSVIMVVVD 599
            FITGLP S G SVIMVV+D
Sbjct: 1150 FITGLPNSFGLSVIMVVID 1168


>gb|KYP49340.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 734

 Score =  192 bits (489), Expect = 5e-54
 Identities = 100/204 (49%), Positives = 136/204 (66%), Gaps = 5/204 (2%)
 Frame = +3

Query: 3   LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
           LG+ + I+YK G SN+VADALSR+P Q         S  F L S P F FL+QL+     
Sbjct: 289 LGYDYTIQYKAGSSNVVADALSRIPDQPT-------SSCFVL-SMPQFTFLDQLRQSLHT 340

Query: 183 DPFLQNLQSKHQQGILP-----SSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSG 347
           DP   +L+    Q IL      + Y + +GL+ F+GR +ISP ++  ++LL EFH TP G
Sbjct: 341 DPAFCSLR----QAILEHPDSHAEYRIHNGLVLFQGRILISPTNSFKQLLLEEFHTTPLG 396

Query: 348 GHAGVKRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWE 527
           GH GV +T  RL  NF+W HMRA V  ++A+C  CQQ+KY T+ PAGLLQPLPIP+ +WE
Sbjct: 397 GHMGVTKTFKRLNTNFFWSHMRADVQHFVAQCHTCQQLKYETKKPAGLLQPLPIPSTIWE 456

Query: 528 DVTMDFITGLPPSKGFSVIMVVVD 599
           D+++DFIT LPPS+G++ ++VVVD
Sbjct: 457 DLSLDFITCLPPSRGYTAVLVVVD 480


>gb|PNY16671.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1284

 Score =  195 bits (495), Expect = 6e-54
 Identities = 95/199 (47%), Positives = 128/199 (64%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            LG+ F IEYKPGK N+ ADALSRV                   S P ++F+EQLK+    
Sbjct: 949  LGYDFTIEYKPGKENIAADALSRVMTLSW--------------SEPKYHFIEQLKVALQS 994

Query: 183  DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
            D  + N+  K + G  P  YS+  GLL+++ R +I  +S L+  +L EFH +P GGHAG+
Sbjct: 995  DHDMSNIIRKCKSGKAPIQYSIRDGLLYWKQRLMIPKDSDLLNKILFEFHTSPIGGHAGI 1054

Query: 363  KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
             RT+ R+ + FYW  M+  +  Y+ KC++CQQ K +  +PAGLLQPLPIPA VWED+ MD
Sbjct: 1055 TRTIARIKSQFYWQDMKQDITEYVQKCVVCQQAKTTNTSPAGLLQPLPIPAQVWEDIAMD 1114

Query: 543  FITGLPPSKGFSVIMVVVD 599
            FITGLPPS G++ IMV+VD
Sbjct: 1115 FITGLPPSSGYTTIMVIVD 1133


>dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subterraneum]
          Length = 1556

 Score =  194 bits (494), Expect = 8e-54
 Identities = 97/200 (48%), Positives = 130/200 (65%), Gaps = 1/200 (0%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            +GF F IEYKPGK NL  DALSR+ L                 S P ++FL++L+LE  Q
Sbjct: 977  IGFDFTIEYKPGKENLAVDALSRINL--------------LAWSEPHYSFLDELRLEIQQ 1022

Query: 183  DPFLQNL-QSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAG 359
            D  L+ + Q         ++Y+V   LLF++ R VI   STLI+ +L EFH +P GGH+G
Sbjct: 1023 DTHLKEIIQQCLNNSCADANYTVKDNLLFWQQRLVIPENSTLIQKILLEFHSSPIGGHSG 1082

Query: 360  VKRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTM 539
            + RT+ R+A+ FYW HMR  ++++I  C++CQQ K +T  PAGLL PLPIP  VW D+ M
Sbjct: 1083 ITRTMARIASQFYWTHMRQHIVAFIKHCVICQQAKTTTTTPAGLLAPLPIPTLVWADIAM 1142

Query: 540  DFITGLPPSKGFSVIMVVVD 599
            DFITGLPPS GF+VI+VV+D
Sbjct: 1143 DFITGLPPSNGFTVILVVID 1162


>ref|XP_015385037.1| PREDICTED: uncharacterized protein LOC107176713 [Citrus sinensis]
          Length = 1088

 Score =  194 bits (492), Expect = 1e-53
 Identities = 102/188 (54%), Positives = 131/188 (69%), Gaps = 1/188 (0%)
 Frame = +3

Query: 24   EYKPGKSNLVADALSRVPLQEEDISPAIR-SEFFALVSTPVFNFLEQLKLENSQDPFLQN 200
            +Y  G +NL ADALSRV  +E  + P+ + +   +L+S P F  L  L  ENS  P + +
Sbjct: 893  QYLLGCTNLAADALSRVH-EEASVEPSTKPASCLSLLSHPSFELLATLHSENSILPDMIH 951

Query: 201  LQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGVKRTLVR 380
            L  +   G L S YS+ +G L +R RY ISP S+L  VLL EFH T   GHAG+KRTLVR
Sbjct: 952  LHHQLSAGSLSSDYSIQNGFLLYRHRYYISPSSSLKAVLLAEFHSTLLAGHAGIKRTLVR 1011

Query: 381  LAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMDFITGLP 560
            LA+ F+WP MR+ V  ++A+CL+CQQ KYSTQAPAG LQPLPIP  VW+++TMDFITGLP
Sbjct: 1012 LASTFFWPKMRSDVERFVAECLVCQQTKYSTQAPAGPLQPLPIPTLVWDELTMDFITGLP 1071

Query: 561  PSKGFSVI 584
             S+GF+VI
Sbjct: 1072 VSRGFTVI 1079


>gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
 gb|PNY07311.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1494

 Score =  193 bits (491), Expect = 2e-53
 Identities = 102/200 (51%), Positives = 133/200 (66%), Gaps = 1/200 (0%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            LG+ + I+YKPG +N VADALSR  L   D S          +S P F F+ +LK +   
Sbjct: 923  LGYHYDIQYKPGSTNTVADALSR-SLDPSDAS-------IMALSVPQFVFINELKQDLEA 974

Query: 183  DPFLQNLQSKHQQGILPS-SYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAG 359
            D   Q L++  +     +  Y+V +GL+ ++GR  ISP S    +LL+EFH+TP GGHAG
Sbjct: 975  DSTFQELRACIETDPAGNPGYAVKNGLILYQGRIWISPTSHYKSLLLKEFHETPIGGHAG 1034

Query: 360  VKRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTM 539
            + +TL RLAANFYW  MR  V  +IA C++CQQ KYST  P GLLQPLPIP+ VWED++M
Sbjct: 1035 IIKTLKRLAANFYWSDMRKEVKQFIASCVICQQTKYSTAKPGGLLQPLPIPSNVWEDISM 1094

Query: 540  DFITGLPPSKGFSVIMVVVD 599
            DF+TGLP S G+SVI+VVVD
Sbjct: 1095 DFVTGLPQSNGYSVILVVVD 1114


>gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1240

 Score =  193 bits (490), Expect = 3e-53
 Identities = 97/199 (48%), Positives = 128/199 (64%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            LG+ F IEYKPGK NL ADALSR+                   S P +NF +Q+K    Q
Sbjct: 689  LGYDFVIEYKPGKENLAADALSRL--------------MTLAWSEPQYNFTQQVKEAIQQ 734

Query: 183  DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
            D  L  +  K  QG+ P++Y+V  G+L+++ R VI P++ LI+ +L EFH +P GGHAG+
Sbjct: 735  DDNLLEIIQKCLQGLAPTNYTVREGILYWKHRMVIPPKAALIQQILEEFHTSPIGGHAGM 794

Query: 363  KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
             RTL R+ + FYW  M+  +  Y+  CL+CQQ K +   PAGLLQPLPIP+ VWED+ MD
Sbjct: 795  TRTLARIKSQFYWSAMKKDIFDYVQNCLVCQQAKTTNTLPAGLLQPLPIPSQVWEDIAMD 854

Query: 543  FITGLPPSKGFSVIMVVVD 599
            FITGLP S G++ IMVVVD
Sbjct: 855  FITGLPLSFGYTTIMVVVD 873


>ref|XP_024038299.1| uncharacterized protein LOC112097344 [Citrus clementina]
          Length = 1381

 Score =  191 bits (484), Expect = 2e-52
 Identities = 102/193 (52%), Positives = 129/193 (66%), Gaps = 1/193 (0%)
 Frame = +3

Query: 24   EYKPGKSNLVADALSRVPLQEEDISPAIRS-EFFALVSTPVFNFLEQLKLENSQDPFLQN 200
            +Y    +NL  DALSRV  +E  + P+ R      L+S P F  L  L  ENS  P + +
Sbjct: 907  QYLLSCTNLATDALSRVH-EEASVEPSTRPPSCLPLLSHPSFELLATLHSENSTLPDIID 965

Query: 201  LQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGVKRTLVR 380
            L  +   G L S YSV +G   +R RY ISP S+L  VLL +FH TP  GHAG+K TLVR
Sbjct: 966  LHHQLATGSLSSDYSVQNGFFLYRHRYYISPSSSLKTVLLAKFHSTPLAGHAGIKCTLVR 1025

Query: 381  LAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMDFITGLP 560
            LA+ F+WP MR+ V  ++A+CL+CQQ KYSTQAP G LQPLPIP  VW+++TMDFIT LP
Sbjct: 1026 LASTFFWPKMRSDVERFVAECLVCQQTKYSTQAPTGPLQPLPIPTLVWDELTMDFITCLP 1085

Query: 561  PSKGFSVIMVVVD 599
             S+GF+VI+VVVD
Sbjct: 1086 VSRGFTVILVVVD 1098


>dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subterraneum]
          Length = 1479

 Score =  189 bits (480), Expect = 6e-52
 Identities = 93/199 (46%), Positives = 129/199 (64%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            LG+ F IEYKPGK NL ADALSR+                   S P  ++++Q+K    Q
Sbjct: 960  LGYDFTIEYKPGKDNLAADALSRMMCMGW--------------SEPQCSWIQQIKTALQQ 1005

Query: 183  DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
            D  L  +  + +QG   + Y+V  GLL+++ R VI  +  L++ +L+EFH +P GGHAG+
Sbjct: 1006 DTTLMEIIQQCEQGQTNTHYTVRDGLLYWKHRIVIPVDDALLQQVLKEFHSSPIGGHAGM 1065

Query: 363  KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
             RTL R+ A FYWP+M+  ++ Y+  CL+CQQ K +   PAGLLQPLPIP+ +WED+ MD
Sbjct: 1066 TRTLARIQAQFYWPNMKQDIVQYVQNCLVCQQTKTTNTLPAGLLQPLPIPSQIWEDLAMD 1125

Query: 543  FITGLPPSKGFSVIMVVVD 599
            FITGLP S G++VI+VVVD
Sbjct: 1126 FITGLPSSHGYTVILVVVD 1144


>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score =  188 bits (478), Expect = 1e-51
 Identities = 99/199 (49%), Positives = 130/199 (65%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            +G+ F I YKPG SN VADALSR  + E ++         A+V+     + E L+ E + 
Sbjct: 1078 MGYDFEIHYKPGLSNRVADALSRKTVGEVELG--------AIVAVQGVEWAE-LRREITG 1128

Query: 183  DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
            D FL  ++ + Q+G  PS +++V G L F+GRYVI   ST+I  LL E+HD P GGHAG 
Sbjct: 1129 DSFLTQVRKELQEGRTPSHFTLVDGNLLFKGRYVIPSSSTIIPKLLYEYHDAPMGGHAGE 1188

Query: 363  KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
             +T +RLAA +YW  MR  V  Y+ +CL+CQQ K S Q P GLLQPLPIP+ VWED++MD
Sbjct: 1189 LKTYLRLAAEWYWRGMRQEVARYVHQCLICQQQKVSQQHPRGLLQPLPIPSLVWEDISMD 1248

Query: 543  FITGLPPSKGFSVIMVVVD 599
            FI GLP SKG   I+V+VD
Sbjct: 1249 FIEGLPVSKGVDTILVIVD 1267


>dbj|GAU19157.1| hypothetical protein TSUD_79800 [Trifolium subterraneum]
          Length = 1500

 Score =  188 bits (477), Expect = 2e-51
 Identities = 92/199 (46%), Positives = 126/199 (63%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            LG+ F IEYKPGK N+ ADALSR+                   S P  +F+E++K+    
Sbjct: 926  LGYDFTIEYKPGKDNMAADALSRIMTLSW--------------SEPKCHFIEEVKIALQN 971

Query: 183  DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
            D  ++++  K   G  P  YS   GLL+++ R VI  +S L+  +L EFH +P GGH+ +
Sbjct: 972  DTQMKDIMQKSLLGKAPVQYSTKEGLLYWKQRLVIPRDSNLLHKVLFEFHTSPIGGHSSI 1031

Query: 363  KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
             RTL R+ + FYWP M+  +I Y+ KC++CQQ K +  +PAGLLQPLPIP+ VWED+ MD
Sbjct: 1032 TRTLARIKSQFYWPDMKKDIIEYVQKCIVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMD 1091

Query: 543  FITGLPPSKGFSVIMVVVD 599
            FITGLP S G++ IMVVVD
Sbjct: 1092 FITGLPSSFGYNTIMVVVD 1110


>gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trifolium pratense]
          Length = 893

 Score =  187 bits (475), Expect = 2e-51
 Identities = 101/202 (50%), Positives = 134/202 (66%), Gaps = 3/202 (1%)
 Frame = +3

Query: 3   LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
           LG+ + I+YKPGK+N+VADALSR         P+  S    L+STP F F+ +L+ E  Q
Sbjct: 329 LGYHYDIQYKPGKTNVVADALSRC------CEPS--SAELNLLSTPPFLFINELREELQQ 380

Query: 183 DPFLQNLQSKHQQGILPSSYS---VVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGH 353
           +   Q L   H     P+ +    + +GLL   GR  I   S    +LL+EFH+TP GGH
Sbjct: 381 NSSYQELC--HNVISDPTKFPDFVISNGLLLMNGRIWIPANSKFKVLLLKEFHETPVGGH 438

Query: 354 AGVKRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDV 533
           AGV +TL RL+ANFYW HMR  +  ++A+C +CQQ KYST  P+GLLQPLPIP+ VWED+
Sbjct: 439 AGVIKTLKRLSANFYWQHMRKEIKDFVARCFICQQTKYSTSKPSGLLQPLPIPSNVWEDI 498

Query: 534 TMDFITGLPPSKGFSVIMVVVD 599
           ++DFITGLP S G+SV++VVVD
Sbjct: 499 SLDFITGLPLSGGYSVLLVVVD 520


>dbj|GAU44596.1| hypothetical protein TSUD_187860 [Trifolium subterraneum]
          Length = 1267

 Score =  187 bits (476), Expect = 2e-51
 Identities = 90/199 (45%), Positives = 126/199 (63%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            LG+ F IEYKPGK N+ ADALSRV                   S P   F++Q+K+    
Sbjct: 730  LGYDFTIEYKPGKENIAADALSRVMTLSW--------------SEPKCQFIDQIKIALQN 775

Query: 183  DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
            D  ++++  K   G     YS+  GLL+++ R V+  ++ L+  LL EFH +P GGH+G+
Sbjct: 776  DSHMKDIMQKSALGKAAIQYSIKEGLLYWKQRLVVPRDNDLLHKLLFEFHTSPIGGHSGI 835

Query: 363  KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
             RT+ R+ + FYWP M+  ++ Y+ KC++CQQ K +  +PAGLLQPLPIP+ VWED+ MD
Sbjct: 836  TRTIARIKSQFYWPDMKNDIVEYVQKCVVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMD 895

Query: 543  FITGLPPSKGFSVIMVVVD 599
            FITGLP S G++ IMVVVD
Sbjct: 896  FITGLPSSYGYTTIMVVVD 914


>gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1535

 Score =  187 bits (474), Expect = 4e-51
 Identities = 92/199 (46%), Positives = 126/199 (63%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            LG+ F IEYKPGK N+ ADALSR+                   S P   F+EQ+++    
Sbjct: 961  LGYDFTIEYKPGKENMAADALSRIMTLSW--------------SEPKCQFIEQIRVALQN 1006

Query: 183  DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
            D  ++ +  K   G  P  YS+  GLL+++ R VI  ++ L+  +L EFH +P GGHAG+
Sbjct: 1007 DNQMREILMKCNAGKAPVQYSMRDGLLYWKQRLVIPKDNDLLYKVLFEFHTSPIGGHAGI 1066

Query: 363  KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
             RT+ R+ + FYWP M+  +I Y+ KC++CQQ K +  +PAGLLQPLPIP+ VWED+ MD
Sbjct: 1067 TRTMARIKSQFYWPDMKQDIIDYVQKCMVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMD 1126

Query: 543  FITGLPPSKGFSVIMVVVD 599
            FITGLP S G++ IMVVVD
Sbjct: 1127 FITGLPLSSGYTTIMVVVD 1145


>gb|PNX93307.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 551

 Score =  182 bits (461), Expect = 5e-51
 Identities = 98/200 (49%), Positives = 124/200 (62%), Gaps = 1/200 (0%)
 Frame = +3

Query: 3   LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALV-STPVFNFLEQLKLENS 179
           LG+ F+IEYKPGK N  ADALSR+               FAL  S P   FLE+L+ + +
Sbjct: 18  LGYDFKIEYKPGKENQAADALSRM---------------FALSWSEPHSLFLEELRNKLA 62

Query: 180 QDPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAG 359
            +  L+ L    Q       Y+V  GLL+++ R VI  E  LI+ +L E+H +P GGHAG
Sbjct: 63  ANDHLKLLMIDCQNATADKHYTVREGLLYWKDRLVIPVEEALIQRILPEYHSSPIGGHAG 122

Query: 360 VKRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTM 539
           + RT+ RL A FYWP M+  V  Y+  C++CQQ K S   P+GLLQPLPIP  VW+D+ M
Sbjct: 123 ITRTMARLKAQFYWPKMQEQVQEYVQNCVICQQAKVSNTLPSGLLQPLPIPQQVWKDIAM 182

Query: 540 DFITGLPPSKGFSVIMVVVD 599
           DFITGLP   GFSVIMVVVD
Sbjct: 183 DFITGLPIVNGFSVIMVVVD 202


>dbj|GAU41241.1| hypothetical protein TSUD_97760 [Trifolium subterraneum]
          Length = 1186

 Score =  186 bits (471), Expect = 9e-51
 Identities = 92/199 (46%), Positives = 124/199 (62%)
 Frame = +3

Query: 3    LGFQFRIEYKPGKSNLVADALSRVPLQEEDISPAIRSEFFALVSTPVFNFLEQLKLENSQ 182
            LG+ F IEYKPGK N+ ADALSRV                     P   F+EQ++     
Sbjct: 716  LGYDFTIEYKPGKENMAADALSRV--------------MTLTWCEPKCQFIEQIREALQN 761

Query: 183  DPFLQNLQSKHQQGILPSSYSVVHGLLFFRGRYVISPESTLIEVLLREFHDTPSGGHAGV 362
            DP + ++  K+     P  YS+  GLL+++ R VI  ++ L+  +L EFH  P GGHAG+
Sbjct: 762  DPQMTDIMLKYALNKAPIQYSMRDGLLYWKQRLVIPRDNDLLHKVLFEFHTPPIGGHAGI 821

Query: 363  KRTLVRLAANFYWPHMRATVISYIAKCLLCQQIKYSTQAPAGLLQPLPIPAAVWEDVTMD 542
             RTL R+ + FYWP M+  ++ Y+ KC++CQQ K +  +PAGLLQPLPIP+ VWED+ MD
Sbjct: 822  TRTLARIKSQFYWPDMKQYIVEYVQKCVVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMD 881

Query: 543  FITGLPPSKGFSVIMVVVD 599
            FITGLP S G++ IMVVVD
Sbjct: 882  FITGLPLSSGYTTIMVVVD 900