BLASTX nr result
ID: Rehmannia32_contig00016001
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia32_contig00016001
(1256 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNX84630.1| retrovirus-related Pol polyprotein from transposo... 396 e-131
gb|PNX75793.1| retrovirus-related Pol polyprotein from transposo... 399 e-129
gb|PNX74828.1| retrovirus-related Pol polyprotein from transposo... 393 e-128
dbj|GAU37804.1| hypothetical protein TSUD_276210, partial [Trifo... 392 e-128
emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera] 403 e-127
gb|OMO88814.1| Reverse transcriptase, RNA-dependent DNA polymera... 392 e-127
gb|KOM46937.1| hypothetical protein LR48_Vigan07g064100 [Vigna a... 393 e-127
gb|PNX74277.1| retrovirus-related Pol polyprotein from transposo... 392 e-126
gb|PNY03100.1| retrovirus-related Pol polyprotein from transposo... 388 e-126
gb|KYP54918.1| Retrovirus-related Pol polyprotein from transposo... 382 e-126
gb|OMP02866.1| Reverse transcriptase, RNA-dependent DNA polymera... 388 e-126
gb|PNY00469.1| retrovirus-related Pol polyprotein from transposo... 390 e-125
gb|PNX92076.1| retrovirus-related Pol polyprotein from transposo... 389 e-125
ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-r... 386 e-125
gb|PNX77692.1| retrovirus-related Pol polyprotein from transposo... 382 e-124
gb|OMO78632.1| Integrase, catalytic core [Corchorus capsularis] 396 e-123
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 398 e-123
ref|XP_021652040.1| uncharacterized protein LOC110643835 [Hevea ... 391 e-122
ref|XP_014628734.1| PREDICTED: uncharacterized protein LOC106794... 392 e-122
gb|PNX93131.1| retrovirus-related Pol polyprotein from transposo... 388 e-122
>gb|PNX84630.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Trifolium pratense]
Length = 543
Score = 396 bits (1018), Expect = e-131
Identities = 213/398 (53%), Positives = 261/398 (65%), Gaps = 7/398 (1%)
Frame = -2
Query: 1186 NINAQNDIVTTTQIISDAQNDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPP------ 1025
+I+A + I +T + D DF LA N+ + T + S P+PP
Sbjct: 119 DISASDTITPSTPVFDD---DFVVTTQSLAP-NSDIQTTPHTSDSPPPSAPSPPPSDNND 174
Query: 1024 -ILRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAF 848
++R+S+R R+ P +L Y C + + S G YPI +F S LS H F
Sbjct: 175 IVIRKSTRMRSQPGHLNDYVCNLSDAYSKSSS-----QGMLYPISNFHSCANLSTSHTKF 229
Query: 847 SAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVK 668
++ EP +Y QAS Q W AM AE+ AL++N+TWI+ D P + IG KWVYKVK
Sbjct: 230 VLSVNNDVEPNTYHQASLQDCWVQAMNAELHALQQNKTWILVDAPPNVKPIGSKWVYKVK 289
Query: 667 YRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVN 488
++++GSIERYKARLVAKGYTQ EG+D+F+TFSPVAKITTVR LIALAA K W LHQLDVN
Sbjct: 290 HKADGSIERYKARLVAKGYTQVEGIDFFETFSPVAKITTVRTLIALAAIKSWHLHQLDVN 349
Query: 487 NAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQ 308
NAFLHG+L EEVYM P G S +VCKL KSLYGLKQASR+W++KLTS LL G++Q
Sbjct: 350 NAFLHGELQEEVYMSIPQGVTTSKPNQVCKLLKSLYGLKQASRKWYEKLTSVLLAQGYMQ 409
Query: 307 SKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKGHLDATFTIKDLGTLKYILG 128
S SD SLFT+ D S T L VYVDDIILAG++ E IK LD F IKDLG LKY LG
Sbjct: 410 SSSDHSLFTLHKDSSFTALLVYVDDIILAGDSHDEFLHIKKLLDDLFRIKDLGQLKYFLG 469
Query: 127 IEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMD 14
IEVA S +GITLCQRKY LD+L DTG +G KP TP+D
Sbjct: 470 IEVAHSSQGITLCQRKYCLDLLQDTGLLGAKPAKTPLD 507
>gb|PNX75793.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 733
Score = 399 bits (1024), Expect = e-129
Identities = 210/389 (53%), Positives = 263/389 (67%), Gaps = 4/389 (1%)
Frame = -2
Query: 1156 TTQIISDAQNDFADAQHDLAAQNTTV----VQTDPVNSHIEHSNPNPPILRRSSRNRTNP 989
TT +I D +++ D+ N+T+ T + + PILRRS+R T P
Sbjct: 72 TTTLIEDEEHE-----PDIEPANSTIDIPPPHTPATTDALNQLHSPSPILRRSTRQTTKP 126
Query: 988 SYLQVYDCKIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSY 809
++L Y C + S S+ + +G YPI DF S +S H ++ I +EP SY
Sbjct: 127 AHLSDYLCNL-----SNSSSASSSTGILYPISDFHSYSNISKTHGRYAMSIIAHSEPSSY 181
Query: 808 AQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKAR 629
+ASK + W +AM AEI AL++N+TW+ D PA IG KWVYKVK+R++GSIERYKAR
Sbjct: 182 KEASKFQCWIEAMNAEITALKQNKTWVYVDQPAHVKPIGSKWVYKVKHRADGSIERYKAR 241
Query: 628 LVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVY 449
LVAKGY Q EGLD+FDTFSPVAKITTVR+LIALA+ K W LHQLDVNNAFLHG+L E+VY
Sbjct: 242 LVAKGYNQIEGLDFFDTFSPVAKITTVRILIALASLKSWHLHQLDVNNAFLHGELQEDVY 301
Query: 448 MLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHD 269
M P G + +VCKL KSLYGLKQASR+W+++LTS L+ G+ QS SD SLFT+ HD
Sbjct: 302 MTIPEGVVAPKPNQVCKLLKSLYGLKQASRKWYERLTSLLVQQGYTQSTSDYSLFTLKHD 361
Query: 268 DSITILCVYVDDIILAGNNLQEIQAIKGHLDATFTIKDLGTLKYILGIEVARSKRGITLC 89
S T L VYVDDIILAG++L E IK LD F IKDLG LKY LG+EVA S+ GI++C
Sbjct: 362 HSFTALLVYVDDIILAGDSLSEFARIKQILDREFKIKDLGQLKYFLGLEVAHSQSGISIC 421
Query: 88 QRKYALDILTDTGYIGCKPCSTPMDSKTE 2
QRKY LD+L DTG IG KP TP+D T+
Sbjct: 422 QRKYCLDLLKDTGLIGSKPAPTPLDHSTK 450
>gb|PNX74828.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 612
Score = 393 bits (1009), Expect = e-128
Identities = 209/361 (57%), Positives = 255/361 (70%), Gaps = 4/361 (1%)
Frame = -2
Query: 1072 TDPVNSHIEHSNPNPPI---LRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQY 902
+ P +SH + N PP LRRS+R PSYLQ Y C SI+ A IS Y
Sbjct: 21 SSPTSSH-DSPNLTPPSNDNLRRSTRTIIPPSYLQDYHCY---SIKG--CANNNISHPNY 74
Query: 901 PIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMT 722
P+ LS D + ++K+F IS EPK++ QASK W+ AM AE+ AL++N+TW +
Sbjct: 75 PLSSVLSYDNCAPEYKSFCCSISATIEPKTFNQASKLDCWRKAMDAELLALDENKTWSIV 134
Query: 721 DLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRL 542
DLP K+ IGCKWVYK+KY +NGSIERYKARLVAKGYTQ EG+DYFDTFSPVAKITTVR
Sbjct: 135 DLPHGKNPIGCKWVYKIKYHANGSIERYKARLVAKGYTQTEGIDYFDTFSPVAKITTVRF 194
Query: 541 LIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSND-KKVCKLTKSLYGLKQA 365
L+ALA+ KGW L QLDVNNAFLHGDL+EEVYM PPGY + KVCKL KSLYGLKQA
Sbjct: 195 LLALASIKGWDLEQLDVNNAFLHGDLNEEVYMSLPPGYPSNTGFNKVCKLHKSLYGLKQA 254
Query: 364 SRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKG 185
SRQW+ KL++ L++ G+ QS SD SL+ S+D T L VYVDDIILAGN+ QEIQ +K
Sbjct: 255 SRQWYSKLSAALISLGYEQSVSDHSLYIKSNDSEFTALLVYVDDIILAGNSSQEIQDVKH 314
Query: 184 HLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMDSKT 5
LD F IKDLG L+Y LG E+ARS +GI + QRKYAL++L DTG++ KP P + T
Sbjct: 315 FLDQKFKIKDLGKLRYFLGFEIARSPKGIFVNQRKYALELLQDTGFLATKPSKIPFNPTT 374
Query: 4 E 2
+
Sbjct: 375 K 375
>dbj|GAU37804.1| hypothetical protein TSUD_276210, partial [Trifolium subterraneum]
Length = 633
Score = 392 bits (1006), Expect = e-128
Identities = 197/357 (55%), Positives = 251/357 (70%), Gaps = 5/357 (1%)
Frame = -2
Query: 1072 TDPVNSHIEHSNPNPPI----LRRSSRNRTNPSYLQVYDCK-IPPSIQSQHSAQTIISGK 908
T+PVN + N PI LR+S+RN P+YLQ Y C + +I S
Sbjct: 85 TEPVNPPSSTTLTNKPIDYVPLRQSTRNCHPPTYLQDYYCNHLSNTIHDSSGNMEPSSSC 144
Query: 907 QYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWI 728
+YPI F+S +S+ HK + IS I+EP Y +A + W+ A++AE+ ALEKN TW
Sbjct: 145 KYPISSFISYQNISSAHKHYLLNISTISEPTCYEKAICDENWRTAIQAELTALEKNNTWK 204
Query: 727 MTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTV 548
+ LP KH IGCKWV+K+K ++G+IERYKARLVAKGYTQ EG+DY DTFSPV K+TT+
Sbjct: 205 LVSLPPHKHSIGCKWVFKLKLHASGTIERYKARLVAKGYTQTEGIDYLDTFSPVVKMTTI 264
Query: 547 RLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQ 368
R+L+A+AA++ W L+QLDVN AFLHGDL+EEVYM PPPG SN VCKL +SLYGLKQ
Sbjct: 265 RMLLAIAASENWPLYQLDVNTAFLHGDLNEEVYMQPPPGLALSNPNLVCKLQRSLYGLKQ 324
Query: 367 ASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIK 188
AS+QW KLT L + G++QSKSD SLFT T++ V VDD++L G + EIQ IK
Sbjct: 325 ASKQWNTKLTETLTSSGYVQSKSDYSLFTKQASTGFTVILVCVDDLVLGGTDSTEIQNIK 384
Query: 187 GHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPM 17
LDA F+IKDLG+LKY LG EVAR++ GI+LCQRKYALD++ DTG +G KPC+TPM
Sbjct: 385 ALLDAKFSIKDLGSLKYFLGFEVARTQAGISLCQRKYALDLIKDTGLLGAKPCNTPM 441
>emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera]
Length = 1128
Score = 403 bits (1036), Expect = e-127
Identities = 208/363 (57%), Positives = 263/363 (72%), Gaps = 4/363 (1%)
Frame = -2
Query: 1087 TTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDC----KIPPSIQSQHSAQTI 920
T+V+++ + I H+N + LRRS R + P YLQ Y C KI + Q+ S +
Sbjct: 526 TSVIESSIPENTI-HANNDANSLRRSERTKHLPKYLQNYYCGNMTKIDSATQAPSSCSS- 583
Query: 919 ISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKN 740
SGK Y I FLS +LS+KHKAF IS EPK+Y Q WQ AM EI+AL+ N
Sbjct: 584 -SGKPYCIFSFLSDSRLSSKHKAFIYVISSTFEPKTYKQXVSIPHWQTAMTDEIKALKHN 642
Query: 739 QTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAK 560
+TW + LP +K IGCKWVY+VK++++GS+ERYKARLVAKGYTQ+EGLD+FDT+SPVAK
Sbjct: 643 KTWDLAILPPNKTAIGCKWVYRVKFKADGSVERYKARLVAKGYTQQEGLDFFDTYSPVAK 702
Query: 559 ITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLY 380
+TTVR+L+A+AAAK W+LHQLDVNNAFLHGDL+EEVYM P G+ ND +VCKL KSLY
Sbjct: 703 MTTVRVLLAIAAAKQWYLHQLDVNNAFLHGDLNEEVYMQLPLGFSTPNDPRVCKLKKSLY 762
Query: 379 GLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEI 200
GL+QASRQW+ KL+S LL +GF Q+K+DSSLF S L +YVDD+I+A N+L+EI
Sbjct: 763 GLRQASRQWYSKLSSSLLKFGFSQAKTDSSLFIKQTSTSFIALLIYVDDVIIASNDLKEI 822
Query: 199 QAIKGHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTP 20
+K L +FTIKDLG LKY +GIEVARS +GI L QRKYALD+L D+G+ G KP P
Sbjct: 823 DVVKKFLHESFTIKDLGELKYFVGIEVARSAKGIVLSQRKYALDVLKDSGFFGSKPIGFP 882
Query: 19 MDS 11
M+S
Sbjct: 883 MES 885
>gb|OMO88814.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
capsularis]
Length = 724
Score = 392 bits (1007), Expect = e-127
Identities = 194/362 (53%), Positives = 250/362 (69%)
Frame = -2
Query: 1087 TTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGK 908
T ++ D + I + L RS RNR P YLQ Y+C SQ S+ T SG
Sbjct: 188 TPIISNDSSLNEISLPSNEDQPLARSQRNRRPPPYLQYYECSKVRRQPSQSSSTTSGSGT 247
Query: 907 QYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWI 728
+YPI +FLS +LS+ + F + I+ I EPKSY++A K W+ A+ AE+ ALE N+TW
Sbjct: 248 RYPISNFLSTHRLSSTYSTFVSNITSIAEPKSYSEAIKDPNWKAAIDAELHALEANKTWS 307
Query: 727 MTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTV 548
+ DLP K +GCKWV+KVKY+S+GSIERYKARLVAKGYTQ+EG+D+ +TF+PVAK+TTV
Sbjct: 308 IVDLPPHKSPVGCKWVFKVKYKSDGSIERYKARLVAKGYTQQEGIDFHETFAPVAKMTTV 367
Query: 547 RLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQ 368
R L+A+A+ K W L+QLDV NA LHGDL EEVYM PPG + VCKL KSLYGLKQ
Sbjct: 368 RCLLAIASTKNWPLYQLDVQNALLHGDLDEEVYMSLPPGVTSKGENSVCKLHKSLYGLKQ 427
Query: 367 ASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIK 188
AS QWF K ++ LL YGF+QS+SD SLF S + VYVDDI++ GNN + I ++K
Sbjct: 428 ASLQWFAKFSTALLTYGFVQSRSDYSLFIKSSKTDFVAILVYVDDIVITGNNSKLIDSVK 487
Query: 187 GHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMDSK 8
L F+IKDLG+LKY LG+EVARSK+GI L QRKY L++L++TG G +P PM+
Sbjct: 488 NALQRQFSIKDLGSLKYFLGLEVARSKQGIYLSQRKYTLELLSETGLAGARPLYVPMEQN 547
Query: 7 TE 2
T+
Sbjct: 548 TK 549
>gb|KOM46937.1| hypothetical protein LR48_Vigan07g064100 [Vigna angularis]
Length = 763
Score = 393 bits (1010), Expect = e-127
Identities = 209/380 (55%), Positives = 255/380 (67%)
Frame = -2
Query: 1144 ISDAQNDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDC 965
I D + DA Q T D NS + RRS+R R P YL Y
Sbjct: 154 IDDERPTEMDANEQREMQQTVA---DNNNSDSTANGEENHSCRRSNRVRRTPEYLNDYVH 210
Query: 964 KIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKE 785
++ S+ +++ +T YPI D LS D L+ KH ++ I+ EP+SY +A E
Sbjct: 211 QVNQSLSMKNNFKT-----PYPISDLLSCDSLTEKHLKYTMTITANDEPRSYNEAKGMCE 265
Query: 784 WQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQ 605
W++AM+ EI+AL+ N T +T LP K IGC+WVYK KY +G+IERYKARLVAKGYTQ
Sbjct: 266 WEEAMQREIKALQDNNTRYLTQLPPGKKPIGCRWVYKTKYNVDGTIERYKARLVAKGYTQ 325
Query: 604 EEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYL 425
+EG+DY DTFSPVAK+TTVRLLI LAA+ WFLHQLDV NAFL GDL+EEVYM PPPG
Sbjct: 326 QEGIDYLDTFSPVAKLTTVRLLIVLAASNNWFLHQLDVENAFLRGDLNEEVYMEPPPGLN 385
Query: 424 QSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCV 245
+ +VC+LTKSLYGLKQASRQWF+KL+S L++ +IQSKSD SLF T L V
Sbjct: 386 THKEGQVCRLTKSLYGLKQASRQWFEKLSSFLISVNYIQSKSDHSLFIKGTSTDFTALLV 445
Query: 244 YVDDIILAGNNLQEIQAIKGHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDI 65
YVDDIILAGN++ EI +K L F IK+LG LKY LG+EVARSK+GI LCQRKYALDI
Sbjct: 446 YVDDIILAGNSMTEINNVKTLLHNKFQIKNLGELKYFLGLEVARSKKGIHLCQRKYALDI 505
Query: 64 LTDTGYIGCKPCSTPMDSKT 5
L +TG +GCKP STP S T
Sbjct: 506 LKETGMLGCKPSSTPFLSDT 525
>gb|PNX74277.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 762
Score = 392 bits (1008), Expect = e-126
Identities = 205/359 (57%), Positives = 250/359 (69%), Gaps = 7/359 (1%)
Frame = -2
Query: 1057 SHIEHSNPN---PPI---LRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQYPI 896
S H PN PP LRRS+R T P YL+ Y C S IS YP+
Sbjct: 172 SSSSHDRPNLAPPPYHDNLRRSTRTITRPGYLEDYHC-----YSVTGSVNNNISHPNYPL 226
Query: 895 QDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDL 716
LS D ++K+F IS I EPK+++QASK W+ AM AE+ AL++N+TW + DL
Sbjct: 227 SSVLSYDNCVPEYKSFCCSISAIIEPKTFSQASKLDCWRKAMDAELLALDENKTWSVVDL 286
Query: 715 PADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLI 536
P K IGCKWVYK+KY +NGSIERYKARLVAKGYTQ EG+DYFDTFSPVAKITTVR L+
Sbjct: 287 PHGKTPIGCKWVYKIKYHANGSIERYKARLVAKGYTQMEGIDYFDTFSPVAKITTVRFLL 346
Query: 535 ALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQS-NDKKVCKLTKSLYGLKQASR 359
ALA+ KGW L QLDVNNAFLHGDL+EEVYM PPGY + KVC+L KSLYGLKQASR
Sbjct: 347 ALASIKGWDLEQLDVNNAFLHGDLNEEVYMSLPPGYSSAIGSNKVCRLHKSLYGLKQASR 406
Query: 358 QWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKGHL 179
QW+ KL+S L+++G+ QS SD SL+ S D T L VYVDDI+LAGN+ +EIQA+K L
Sbjct: 407 QWYSKLSSALISFGYKQSVSDHSLYIKSTDSEFTALLVYVDDIVLAGNSSKEIQAVKHFL 466
Query: 178 DATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMDSKTE 2
D F IKDLG L+Y LG E+ARS +GI + QRKY L++L DTG++ KP + P + T+
Sbjct: 467 DQKFKIKDLGKLRYFLGFEIARSPKGIFVNQRKYTLELLQDTGFLATKPSNIPFNPTTK 525
>gb|PNY03100.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 629
Score = 388 bits (997), Expect = e-126
Identities = 199/376 (52%), Positives = 254/376 (67%), Gaps = 2/376 (0%)
Frame = -2
Query: 1123 FADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYL-QVYDCKIPPSI 947
F+ + H + TV + P SH+ P P LRRS+RN P +L + Y C + +
Sbjct: 10 FSTSNHSNSTSPHTVSSSTP--SHLLSKQPEP--LRRSTRNSHPPPFLTENYYCNLTSAT 65
Query: 946 QSQHSAQTIISGK-QYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAM 770
SA T+ S +YPI ++S +S+ H F +S I EP Y +A + W+ A+
Sbjct: 66 LPDSSAATLSSSSCKYPISSYVSYQNISSAHNHFLFNLSTIPEPTCYEKAVCDENWKTAI 125
Query: 769 KAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLD 590
AE+ ALEKN TW + LP KH IGCKWV+K+K ++G+IERYKARLVAKGYTQ EG+D
Sbjct: 126 NAELSALEKNNTWKLVPLPLHKHAIGCKWVFKLKLHADGTIERYKARLVAKGYTQTEGID 185
Query: 589 YFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDK 410
Y DTFSPV K+TT+R+L+A+AAA+ W L+QLDVN AFLHGDL+EEVYM PPPG +
Sbjct: 186 YMDTFSPVVKMTTIRVLLAVAAAQNWPLYQLDVNTAFLHGDLNEEVYMQPPPGLSLPHSN 245
Query: 409 KVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDI 230
VCKL +SLYGLKQASRQW KLT L G++QSKSD SLFT +TI+ VYVDD+
Sbjct: 246 LVCKLQRSLYGLKQASRQWNTKLTETLTASGYVQSKSDYSLFTKQASSGLTIILVYVDDL 305
Query: 229 ILAGNNLQEIQAIKGHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTG 50
+L G + EIQ IK LD F+IKDLG LKY LG EVAR++ GI+LCQRKYALD++ D G
Sbjct: 306 VLGGTDSNEIQNIKALLDEKFSIKDLGYLKYFLGFEVARTQAGISLCQRKYALDLIQDAG 365
Query: 49 YIGCKPCSTPMDSKTE 2
+G KPCSTPM + +
Sbjct: 366 LLGAKPCSTPMQPQLQ 381
>gb|KYP54918.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 471
Score = 382 bits (982), Expect = e-126
Identities = 194/358 (54%), Positives = 250/358 (69%)
Frame = -2
Query: 1090 NTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISG 911
N +V P +S P P LRRS R +P+YL+ + C S + + G
Sbjct: 3 NQSVTTPRPAHSP---QQPPPLPLRRSQRIPFSPTYLKDFHCNFLTS------SPQLSKG 53
Query: 910 KQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTW 731
+P+ ++ + LS+ H + +S EPK Y QA K +EW AMKAEI AL N TW
Sbjct: 54 ISHPLSSVINYNTLSSSHLHYVLSLSTHEEPKFYHQAVKSQEWVVAMKAEIDALTANNTW 113
Query: 730 IMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITT 551
+ DL + KH IGCKWVYK+KYRS+GS+ERYKARLVAKG+TQ EGLDYF+TF+PVAK+TT
Sbjct: 114 TIVDLTSGKHPIGCKWVYKIKYRSDGSVERYKARLVAKGFTQTEGLDYFETFAPVAKLTT 173
Query: 550 VRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLK 371
VRLL+A+A+++ WFLHQLDVNNAFLHGDL EEVYM P G + S +VCKL KSLYGLK
Sbjct: 174 VRLLLAVASSQTWFLHQLDVNNAFLHGDLEEEVYMTIPQGVVCSKPNQVCKLHKSLYGLK 233
Query: 370 QASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAI 191
QASRQW+ KL++CLL++G+ S D SLFT + + T L +YVDD+ILAG ++ EI ++
Sbjct: 234 QASRQWYNKLSTCLLSFGYKHSPHDHSLFTKTANGLFTALLIYVDDLILAGTDIYEINSV 293
Query: 190 KGHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPM 17
K HL +F IKDLG LKY LG+E+ARS GIT+ RKYALDIL+D+G++ KP +PM
Sbjct: 294 KQHLHDSFRIKDLGPLKYFLGLEIARSSTGITVSHRKYALDILSDSGFLASKPVPSPM 351
>gb|OMP02866.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
capsularis]
Length = 666
Score = 388 bits (997), Expect = e-126
Identities = 192/362 (53%), Positives = 249/362 (68%)
Frame = -2
Query: 1087 TTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGK 908
T ++ D + I + L RS RNR P YLQ Y+C SQ S+ T SG
Sbjct: 68 TPIISNDSSLNEISLPSNEDQPLARSQRNRRPPPYLQYYECSKVRRQPSQSSSTTSGSGT 127
Query: 907 QYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWI 728
+YPI +FLS +LS+ + F + I+ I EP+SY++A K W+ A+ AE+ ALE N+TW
Sbjct: 128 RYPISNFLSTHRLSSTYSTFVSNITSIAEPQSYSEAIKDPNWKAAIDAELHALEANKTWS 187
Query: 727 MTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTV 548
+ DLP K +GCKWV+KVKY+S GSIERYKARLVAKGYTQ+EG+D+ +TF+PVAK+TTV
Sbjct: 188 IVDLPPHKSPVGCKWVFKVKYKSYGSIERYKARLVAKGYTQQEGIDFHETFAPVAKMTTV 247
Query: 547 RLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQ 368
R L+A+A+ K W L+QLDV NA LHGDL EEVYM PPG + VCKL KSLYGL+Q
Sbjct: 248 RCLLAIASTKNWPLYQLDVQNALLHGDLDEEVYMSLPPGVTSKGENSVCKLHKSLYGLRQ 307
Query: 367 ASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIK 188
AS QWF K ++ LL YGF+QS+SD SLF S + VYVDDI++ GNN + I ++K
Sbjct: 308 ASLQWFAKFSTALLTYGFVQSRSDYSLFIKSSKTDFVAILVYVDDIVITGNNSKLIDSVK 367
Query: 187 GHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMDSK 8
L F+IKDLG+LKY LG+EVARSK+GI L QRKY L++L++TG G +P PM+
Sbjct: 368 NALQRQFSIKDLGSLKYFLGLEVARSKQGIYLSQRKYTLELLSETGLAGARPLYVPMEQN 427
Query: 7 TE 2
T+
Sbjct: 428 TK 429
>gb|PNY00469.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 778
Score = 390 bits (1003), Expect = e-125
Identities = 205/372 (55%), Positives = 258/372 (69%)
Frame = -2
Query: 1117 DAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKIPPSIQSQ 938
D+ H A Q + + + PV S E S P P R S+R PSYLQ Y C I +Q
Sbjct: 180 DSAHSAADQPSPNLDSVPVPS--EPSIPLPT--RVSTRVTRPPSYLQDYHCNIKSGCTNQ 235
Query: 937 HSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEI 758
S+ + +P+ LS + S +K F IS EP +Y QASK W+ AM AEI
Sbjct: 236 VSSNIV-----HPLSSVLSYNTCSPAYKLFCCSISSTIEPTTYNQASKFDCWKKAMDAEI 290
Query: 757 RALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDT 578
ALE N+TW + DLP K IGCKWVYK+KY +NG+IERYKARLVAKGYTQ EG+DYFDT
Sbjct: 291 TALELNKTWTVVDLPCGKVPIGCKWVYKIKYHANGTIERYKARLVAKGYTQMEGVDYFDT 350
Query: 577 FSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCK 398
FSPVAK+TTVR+L+A+AA +GW L QLDVNNAFLHGDLHEEVYM PPGY + KVCK
Sbjct: 351 FSPVAKMTTVRVLLAVAAVRGWHLEQLDVNNAFLHGDLHEEVYMSLPPGY-DATPSKVCK 409
Query: 397 LTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAG 218
L KSLYGLKQASRQW+ KL++ L++ G+ S++D SL+ SH S T L VYVDDI+LAG
Sbjct: 410 LNKSLYGLKQASRQWYSKLSAALISLGYQASQADHSLYVKSHGTSFTALLVYVDDIVLAG 469
Query: 217 NNLQEIQAIKGHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGC 38
+++EI+++K LD F IKDLG L++ LG+E+ARS GI L QRKY L++L DTG++G
Sbjct: 470 TSIEEIKSVKLFLDQQFKIKDLGPLRFFLGLEIARSSSGIFLNQRKYTLELLEDTGFLGS 529
Query: 37 KPCSTPMDSKTE 2
KP + P+D T+
Sbjct: 530 KPATVPLDPHTK 541
>gb|PNX92076.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 720
Score = 389 bits (998), Expect = e-125
Identities = 202/354 (57%), Positives = 251/354 (70%), Gaps = 2/354 (0%)
Frame = -2
Query: 1066 PVNSHIEH-SNPNPPILRR-SSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQYPIQ 893
P NS S PP L R S+R + P YL+ Y C HS+ SG YP+
Sbjct: 106 PANSTASSPSTSAPPTLTRCSTRPKHIPPYLKDYVCNA-----LDHSSMKS-SGISYPMS 159
Query: 892 DFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLP 713
+F+S LSN H ++ ++ TEPKSYA+A K W+ AM+ E++ALE TWI+ DLP
Sbjct: 160 NFISYQNLSNPHCFYALSLTTHTEPKSYAEAIKFDCWKQAMQVELQALENTGTWILVDLP 219
Query: 712 ADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIA 533
IGC+WVYKVK+ ++GS+ERYKARLVAKG+ Q EGLDYFDTFSPVAK+TTVR++IA
Sbjct: 220 HHVKPIGCRWVYKVKHHADGSVERYKARLVAKGFNQIEGLDYFDTFSPVAKLTTVRIVIA 279
Query: 532 LAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQW 353
LA+ WFLHQLDVNNAFLHGDL E+VYMLPPPG + ++ KVCKL KSLYGLKQASRQW
Sbjct: 280 LASVHNWFLHQLDVNNAFLHGDLQEDVYMLPPPG-VTNDPNKVCKLVKSLYGLKQASRQW 338
Query: 352 FQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKGHLDA 173
+ KLTS LL++G+ Q+ SD SLFT T+L VYVDD+ILAGN++ E +K L
Sbjct: 339 YAKLTSLLLSHGYKQAHSDHSLFTKHDASHFTLLLVYVDDVILAGNHMAEFSYVKNLLHN 398
Query: 172 TFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMDS 11
F IKDLG LKY LG+EVA S +GI+LCQRKY LD+L+D+G +G KP STP D+
Sbjct: 399 AFKIKDLGQLKYFLGLEVAHSAKGISLCQRKYCLDLLSDSGLLGAKPVSTPSDA 452
>ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein
from transposon TNT 1-94 [Gossypium raimondii]
Length = 683
Score = 386 bits (991), Expect = e-125
Identities = 200/352 (56%), Positives = 246/352 (69%)
Frame = -2
Query: 1060 NSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQYPIQDFLS 881
+S H P R RNR PSYLQ Y Q A T G + I + +S
Sbjct: 101 SSSTSHPPTQPSTSSRPQRNRRPPSYLQDYQ-------HYQLPAATNHPGTPHSIFNCIS 153
Query: 880 VDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKH 701
LS +H F+ IS EPK+Y QASK W +AM+AEI ALE+N TW MT LP K
Sbjct: 154 YHNLSPQHLHFTLAISASIEPKTYKQASKFTHWNEAMQAEINALEQNNTWTMTTLPPGKT 213
Query: 700 CIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAA 521
GCKWV++VK+R++GS ERYKARLVAKGYTQ G+DYFDTFSPVAKITTVRLL+ALA +
Sbjct: 214 PXGCKWVFRVKHRADGSTERYKARLVAKGYTQI-GVDYFDTFSPVAKITTVRLLLALATS 272
Query: 520 KGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKL 341
+ W + QLDVNNAFLHGDL+E+VYMLPPPG+ + KVCKL KS+YGLKQASRQWF KL
Sbjct: 273 RHWHIQQLDVNNAFLHGDLNEDVYMLPPPGF-SHDSTKVCKLHKSIYGLKQASRQWFSKL 331
Query: 340 TSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKGHLDATFTI 161
T+ L++ G+IQS +D S+FT H + T+L +YVDDIIL G + EI +K LD TF I
Sbjct: 332 TTALISLGYIQSTADHSMFTKKHSEDFTVLLIYVDDIILTGTSSPEIMKVKQFLDTTFRI 391
Query: 160 KDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMDSKT 5
KDLG LKY LG+EVAR+ +GI + QRKYAL+IL ++G+I CKP TPM +K+
Sbjct: 392 KDLGDLKYFLGLEVARTSQGIHISQRKYALEILQESGFIECKPAKTPMATKS 443
>gb|PNX77692.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Trifolium pratense]
gb|PNX79695.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Trifolium pratense]
Length = 589
Score = 382 bits (980), Expect = e-124
Identities = 189/340 (55%), Positives = 242/340 (71%)
Frame = -2
Query: 1033 NPPILRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHK 854
NPP LR+S+R + +P +LQ Y C + H + SG YPI ++S LSN
Sbjct: 39 NPPNLRKSTRIKHSPLHLQDYICT------AFHDSPNQSSGTLYPISQYVSYSNLSNSQC 92
Query: 853 AFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYK 674
FS ++ EPK++ A+K + W+ AMK E+ ALE+ TW + D+P + IGC+WVYK
Sbjct: 93 RFSLSLTTQHEPKTFTDANKYECWRQAMKVELAALERTGTWKLVDIPPNVKPIGCRWVYK 152
Query: 673 VKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLD 494
+KY ++G++ERYKARLVAKGY Q EGLDYF+T+SPVAK+TTVRL+IALA+ WFLHQLD
Sbjct: 153 IKYHADGTVERYKARLVAKGYNQIEGLDYFETYSPVAKVTTVRLVIALASIHNWFLHQLD 212
Query: 493 VNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGF 314
VNNAFLHG+L E+VYM+ PPG +VCKL KSLYGLKQASR+W++KLTS LL + +
Sbjct: 213 VNNAFLHGELQEDVYMVVPPGVTPHKPNQVCKLLKSLYGLKQASRKWYEKLTSTLLQHQY 272
Query: 313 IQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKGHLDATFTIKDLGTLKYI 134
Q+ SD S+F D S TIL VYVDD+ILAG +L E Q IK L +F IKDLGTLKY
Sbjct: 273 HQASSDHSVFIKKTDASFTILLVYVDDVILAGTSLVEFQHIKSVLHDSFQIKDLGTLKYF 332
Query: 133 LGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMD 14
LG+EV+ S +GI+LCQR Y LD+L DTG +G KP STP +
Sbjct: 333 LGLEVSHSTQGISLCQRNYCLDLLNDTGLLGAKPVSTPSE 372
>gb|OMO78632.1| Integrase, catalytic core [Corchorus capsularis]
Length = 1247
Score = 396 bits (1018), Expect = e-123
Identities = 211/400 (52%), Positives = 265/400 (66%), Gaps = 7/400 (1%)
Frame = -2
Query: 1192 FQNINAQNDIVTTTQIISDAQNDFADAQHDLAAQNTTVVQT------DPVNSHIEHSNPN 1031
FQ+ N+ N +TT I D ++ +A +TT + T D ++ ++ P
Sbjct: 665 FQDKNSPNHNTSTTTPIPLPIFDDTESMSLGSAPHTTTMMTHTPEILDSNDTTNTNTPPT 724
Query: 1030 PPILRRSSRNRTNPSYLQVYDCKIPPSIQSQH-SAQTIISGKQYPIQDFLSVDKLSNKHK 854
P R R R PS + +P + +S S+ SG YP+ +FLS K ++ H
Sbjct: 725 IPQENRPVRVRKLPSRYHNFHVDLPGNNKSTPTSSNNASSGMSYPLVNFLSYSKFNSPHT 784
Query: 853 AFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYK 674
+F I+Q EP SY QA K WQ+AMK E+ ALE+N TW + LP K IG KWVYK
Sbjct: 785 SFLMAITQHNEPTSYKQAIKDTHWQEAMKKELEALEQNHTWTLEQLPTGKKAIGSKWVYK 844
Query: 673 VKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLD 494
+KY S+G+IERYKARLVAKGYTQ EGLDY +TF PVAK+TTVR L+A+ AAK W LHQLD
Sbjct: 845 IKYHSDGTIERYKARLVAKGYTQVEGLDYTETFPPVAKLTTVRTLLAVVAAKSWELHQLD 904
Query: 493 VNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGF 314
V+NAFLHGDL +E+YM PPPGYL SND +VC+L KSLYGLKQASRQW+ K ++ +LN+GF
Sbjct: 905 VHNAFLHGDLDKEIYMKPPPGYLSSNDNRVCRLRKSLYGLKQASRQWYAKFSTAILNFGF 964
Query: 313 IQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKGHLDATFTIKDLGTLKYI 134
IQSK+DSSLF S T L VYVDD+I+A NN +A+K +LDA F IKDLG LKY
Sbjct: 965 IQSKADSSLFLHHKGTSFTALLVYVDDVIIASNNNSHTKALKEYLDAWFHIKDLGPLKYF 1024
Query: 133 LGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMD 14
LG+EVARS GI L QRKYALDIL + G +G KP PM+
Sbjct: 1025 LGLEVARSPEGIVLSQRKYALDILQEVGMLGTKPVLFPME 1064
Score = 219 bits (558), Expect = 3e-59
Identities = 110/232 (47%), Positives = 153/232 (65%), Gaps = 1/232 (0%)
Frame = -2
Query: 697 IGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLIALAAAK 518
+GCKWV+K K +++GS+ER KARLVAKG+ Q G+D+ +TFSPV K T+R+++ +A A+
Sbjct: 4 VGCKWVFKTKTKADGSLERLKARLVAKGFNQVPGVDFLETFSPVVKPATIRVVLTIALAR 63
Query: 517 GWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQS-NDKKVCKLTKSLYGLKQASRQWFQKL 341
W + QLDV NAFLHG L+E V+M PPG+ S + VCKL K+LYGL+QA R WF +
Sbjct: 64 DWEIRQLDVKNAFLHGFLNEPVFMTQPPGFQNSQHPNYVCKLNKALYGLRQAPRVWFDRF 123
Query: 340 TSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKGHLDATFTI 161
++ LL++GF S + SSLF + +L +YVDDIIL G+N ++ L F++
Sbjct: 124 STFLLSFGFTCSVAGSSLFVLQSSRGTILLLLYVDDIILTGSNSHFLRDFIAALGREFSM 183
Query: 160 KDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMDSKT 5
KDLG L Y LG+ V GI L Q +YA ++L CKP STPM +K+
Sbjct: 184 KDLGPLHYFLGVSVTPFDGGILLHQAQYARELLDRALMHNCKPISTPMATKS 235
>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1376
Score = 398 bits (1023), Expect = e-123
Identities = 208/371 (56%), Positives = 253/371 (68%), Gaps = 5/371 (1%)
Frame = -2
Query: 1111 QHDLAAQNTTVVQTD-----PVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCKIPPSI 947
QH++ + N D P ++ + PN LRRS+R R PSYLQ Y + +
Sbjct: 765 QHNVTSPNPATTSHDSISLAPYSTTADSLPPNSSPLRRSTRLRNPPSYLQDYHHSLTSTS 824
Query: 946 QSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMK 767
+ H G YPI+ ++S +LSN +AF + IS ++EP SYA+A+K W AM
Sbjct: 825 TNLHP------GMLYPIEKYISYSRLSNDFQAFVSSISAVSEPHSYAEAAKHDCWLKAMH 878
Query: 766 AEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDY 587
AE+ AL+ NQTW +T LP K +GC+W+YK+KY ++GSIERYKARLVAKGYTQ EGLDY
Sbjct: 879 AELEALKMNQTWTLTPLPPHKQAVGCRWIYKIKYNADGSIERYKARLVAKGYTQVEGLDY 938
Query: 586 FDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKK 407
TFSPVAK+TTVRLL+ALAA W L QLDVNNAFLHGDL+EEVYM P G +
Sbjct: 939 LATFSPVAKLTTVRLLLALAAVFDWHLKQLDVNNAFLHGDLNEEVYMTLPLGMRPEYSNQ 998
Query: 406 VCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDII 227
VCKL KSLYGLKQASRQWF KL+S L+++G+ QS SD SLF S T L +YVDDI+
Sbjct: 999 VCKLQKSLYGLKQASRQWFAKLSSFLIHHGYHQSASDHSLFMKFSSSSTTALLIYVDDIV 1058
Query: 226 LAGNNLQEIQAIKGHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGY 47
LAGNNL EIQ I G LD F IKDLG LKY LG+EVAR+K GI L QRKY LDIL+D G
Sbjct: 1059 LAGNNLSEIQLITGLLDVAFKIKDLGNLKYFLGLEVARNKSGIHLSQRKYVLDILSDCGM 1118
Query: 46 IGCKPCSTPMD 14
+ +P STPMD
Sbjct: 1119 MASRPVSTPMD 1129
>ref|XP_021652040.1| uncharacterized protein LOC110643835 [Hevea brasiliensis]
Length = 1095
Score = 391 bits (1004), Expect = e-122
Identities = 200/361 (55%), Positives = 258/361 (71%), Gaps = 4/361 (1%)
Frame = -2
Query: 1072 TDPVNSHIEHSNPNPP----ILRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQ 905
TDP+ + + S+ + ++S R R PSYLQ Y C + S + + SG
Sbjct: 486 TDPLANSLPPSSSQSSTPYIVPKQSCRTRRKPSYLQDYHCNLSSSTLAAEN-----SGIL 540
Query: 904 YPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIM 725
YP+ F+S LS +K F I+ EPKSY+QA K W++AM+AEI ALE+N+TW++
Sbjct: 541 YPLSIFVSYTSLSPSYKNFFLSITTPIEPKSYSQAIKFDCWKEAMQAEISALEQNKTWVL 600
Query: 724 TDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVR 545
TDLP+ K IGCKWVYK+K++ +GSIERYKARLVAKGYTQ EG++YFDTFSPVAK+T VR
Sbjct: 601 TDLPSGKVPIGCKWVYKIKHKVDGSIERYKARLVAKGYTQTEGINYFDTFSPVAKMTIVR 660
Query: 544 LLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQA 365
LL+ALAA WFL QLDVNNAFLHGDLHEEVYM+ P G+ S +VCKL KSLYGLKQA
Sbjct: 661 LLLALAAMHNWFLKQLDVNNAFLHGDLHEEVYMVLPQGFSSSKPNQVCKLLKSLYGLKQA 720
Query: 364 SRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKG 185
SRQWF KL++ L++ G+ QSKSD SLF S T L VYVDD+ILAG+++ EI +K
Sbjct: 721 SRQWFSKLSTALVSIGYTQSKSDYSLFVKKTSTSFTALLVYVDDVILAGDDMVEIDFVKQ 780
Query: 184 HLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMDSKT 5
L+ +F IKDLG LK+ LG+E+ARS +GI + QRKYAL+IL++ G + KP +PMD+ T
Sbjct: 781 FLNDSFHIKDLGDLKFFLGLEIARSSKGIVVNQRKYALEILSNAGLLASKPAKSPMDAST 840
Query: 4 E 2
+
Sbjct: 841 K 841
>ref|XP_014628734.1| PREDICTED: uncharacterized protein LOC106794221 [Glycine max]
Length = 1150
Score = 392 bits (1006), Expect = e-122
Identities = 206/379 (54%), Positives = 254/379 (67%)
Frame = -2
Query: 1141 SDAQNDFADAQHDLAAQNTTVVQTDPVNSHIEHSNPNPPILRRSSRNRTNPSYLQVYDCK 962
S+ N ++ + L ++ V P H S P P RR+ R RT P+ Y
Sbjct: 224 SNYANSYSPSPPPLPPESEPVPIDQPNTDHTS-SAPTP---RRTDRIRTRPTKYTDYQTS 279
Query: 961 IPPSIQSQHSAQTIISGKQYPIQDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEW 782
+ + H G ++PI +S +KLS+ + +F IS +EPKSY +A K W
Sbjct: 280 FTSATITNHP------GTKHPISSVISYNKLSSSYHSFILNISANSEPKSYNEACKHDSW 333
Query: 781 QDAMKAEIRALEKNQTWIMTDLPADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQE 602
AM EI ALE+N TW++TDLP K+ IGCKWVYK+K+ S+GSIERYKARLVAKGYTQ
Sbjct: 334 VQAMHDEISALERNNTWVLTDLPQHKNVIGCKWVYKIKHNSDGSIERYKARLVAKGYTQI 393
Query: 601 EGLDYFDTFSPVAKITTVRLLIALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQ 422
EGLDY DTFSPVAKITTVRLL+ALAA W+L QLDVNNAFLHG LHEEVYM+ PPG
Sbjct: 394 EGLDYLDTFSPVAKITTVRLLLALAALNNWYLRQLDVNNAFLHGGLHEEVYMVLPPGMKS 453
Query: 421 SNDKKVCKLTKSLYGLKQASRQWFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVY 242
+ +VCKL +SLYGLKQASRQW+ +L++ L ++GF QS +D SLFT+ +S T L VY
Sbjct: 454 AKPGQVCKLQRSLYGLKQASRQWYARLSTFLAHHGFKQSVADYSLFTLKKANSFTALLVY 513
Query: 241 VDDIILAGNNLQEIQAIKGHLDATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDIL 62
VDDI+L+GN+L I +I LD TF IKDLG LKY LG EVAR GI +CQRKYALD+L
Sbjct: 514 VDDIVLSGNDLSVISSITKLLDDTFKIKDLGNLKYFLGFEVARGTSGINICQRKYALDLL 573
Query: 61 TDTGYIGCKPCSTPMDSKT 5
TDT + CKP STP D T
Sbjct: 574 TDTDMLHCKPVSTPFDYYT 592
>gb|PNX93131.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 982
Score = 388 bits (996), Expect = e-122
Identities = 198/354 (55%), Positives = 249/354 (70%), Gaps = 2/354 (0%)
Frame = -2
Query: 1069 DPVNSHIEHSNPNP--PILRRSSRNRTNPSYLQVYDCKIPPSIQSQHSAQTIISGKQYPI 896
+P S S+P P P R R + PSYL + C S SA++ +G YPI
Sbjct: 371 NPSTSSPLPSSPFPIQPANTRPDRIKHRPSYLSDFVCSA-----SDDSAKSSSTGTIYPI 425
Query: 895 QDFLSVDKLSNKHKAFSAQISQITEPKSYAQASKQKEWQDAMKAEIRALEKNQTWIMTDL 716
F S+ +LS H F++ ++Q TEP++Y +A K + W AM +E+ AL + TW + DL
Sbjct: 426 SSFHSLSQLSPSHSVFTSSLTQHTEPRTYTEACKSQHWIQAMTSELEALARTGTWKIVDL 485
Query: 715 PADKHCIGCKWVYKVKYRSNGSIERYKARLVAKGYTQEEGLDYFDTFSPVAKITTVRLLI 536
P + IG KWVYK+K++S+G+IERYKARLVAKGY Q EGLD+FDTFSPVAK+TTVR+L+
Sbjct: 486 PPNVKPIGSKWVYKIKHKSDGTIERYKARLVAKGYNQVEGLDFFDTFSPVAKLTTVRMLL 545
Query: 535 ALAAAKGWFLHQLDVNNAFLHGDLHEEVYMLPPPGYLQSNDKKVCKLTKSLYGLKQASRQ 356
A+A+ KGWFLHQLDVNNAFLHGDL E VYM P G S +VCKL KSLYGLKQASR+
Sbjct: 546 AIASIKGWFLHQLDVNNAFLHGDLQENVYMSIPDGVQCSKPNQVCKLLKSLYGLKQASRK 605
Query: 355 WFQKLTSCLLNYGFIQSKSDSSLFTMSHDDSITILCVYVDDIILAGNNLQEIQAIKGHLD 176
W++KLTS L+ G+ QS SD SLFT+S D+ T L +YVDDIILAG +LQEI IK LD
Sbjct: 606 WYEKLTSLLVKEGYTQSSSDHSLFTISQQDNFTALLIYVDDIILAGTSLQEINRIKNILD 665
Query: 175 ATFTIKDLGTLKYILGIEVARSKRGITLCQRKYALDILTDTGYIGCKPCSTPMD 14
F IKDLG +KY LG+EVA SK GI++ QRKY LD+L D+G +G KP STP+D
Sbjct: 666 THFKIKDLGVVKYFLGLEVAHSKEGISISQRKYCLDLLHDSGLLGSKPASTPLD 719