BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00005712
         (418 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJE29370.1| putative gag protein [Coffea canephora]                114   4e-27
gb|KYP36396.1| Retrovirus-related Pol polyprotein from transposo...    88   1e-17
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo...    88   1e-17
dbj|GAU46320.1| hypothetical protein TSUD_401910 [Trifolium subt...    88   2e-17
gb|EOY18934.1| Uncharacterized protein TCM_043452 [Theobroma cacao]    82   7e-17
gb|EOY01950.1| Uncharacterized protein TCM_011728 [Theobroma cacao]    80   3e-16
gb|KYP74267.1| Retrovirus-related Pol polyprotein from transposo...    84   4e-16
gb|EOY05822.1| Uncharacterized protein TCM_020722 [Theobroma cacao]    81   5e-16
dbj|GAU51472.1| hypothetical protein TSUD_95870 [Trifolium subte...    84   6e-16
gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii]          82   7e-16
gb|PRQ56251.1| putative RNA-directed DNA polymerase [Rosa chinen...    82   1e-15
gb|KYP64657.1| Retrovirus-related Pol polyprotein from transposo...    81   1e-15
gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinen...    79   2e-14
gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis]      79   2e-14
gb|KYP74254.1| Retrovirus-related Pol polyprotein from transposo...    76   5e-14
gb|EOY12702.1| Uncharacterized protein TCM_031224 [Theobroma cacao]    78   7e-14
gb|PNX57240.1| copia LTR rider, partial [Trifolium pratense]           76   9e-14
gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposo...    76   1e-13
ref|XP_020582332.1| uncharacterized protein LOC110025962 [Phalae...    77   2e-13
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]    76   3e-13

>gb|AJE29370.1| putative gag protein [Coffea canephora]
          Length = 433

 Score =  114 bits (284), Expect = 4e-27
 Identities = 65/126 (51%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
 Frame = +1

Query: 49  IGCHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXX-LHSLRKYGYFFSR--WVDLDSG 219
           I C  CH+ GHIKR CP                     + ++ K     SR  W+ LDSG
Sbjct: 230 IQCFGCHEFGHIKRYCPHQKKNDENDYDGVAGYASGGDILTISKGNNTSSRDGWI-LDSG 288

Query: 220 CVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKM 399
           CV HVCSR DYFD+LQ K+AG + LGDGS C+V G GVV+IKM +G    LGGVAYVPK+
Sbjct: 289 CVSHVCSRLDYFDTLQRKKAGFMCLGDGSTCQVKGVGVVKIKMLNGEIRSLGGVAYVPKL 348

Query: 400 RRNLIS 417
           RRNLIS
Sbjct: 349 RRNLIS 354


>gb|KYP36396.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 485

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +1

Query: 55  CHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXXLHSLRKYGYFFSR-----WVDLDSG 219
           C  CH  GH K+NCP                     +         +      WV +DSG
Sbjct: 179 CFYCHKVGHFKKNCPERNRDQKSSADSADIAAISDGYESADVLVVTTSQTQKDWV-MDSG 237

Query: 220 CVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKM 399
           C  H+C ++DYF++L+LK  GT+ LGD   C+V G G V +KM D  ++IL  V YVP +
Sbjct: 238 CSYHMCPKKDYFETLKLKEGGTVLLGDDHPCQVQGIGTVRLKMFDNREYILKDVRYVPDL 297

Query: 400 RRNLIS 417
           +RNLIS
Sbjct: 298 KRNLIS 303


>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 780

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +1

Query: 55  CHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXXLHSLRKYGYFFSR-----WVDLDSG 219
           C  CH  GH K+NCP                     +         +      WV +DSG
Sbjct: 233 CFYCHKVGHFKKNCPERNRDQKSSADSADIAAISDGYESADVLVVTTSQTQKDWV-MDSG 291

Query: 220 CVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKM 399
           C  H+C ++DYF++L+LK  GT+ LGD   C+V G G V +KM D  ++IL  V YVP +
Sbjct: 292 CSYHMCPKKDYFETLKLKEGGTVLLGDDHPCQVQGIGTVRLKMFDNREYILKDVRYVPDL 351

Query: 400 RRNLIS 417
           +RNLIS
Sbjct: 352 KRNLIS 357


>dbj|GAU46320.1| hypothetical protein TSUD_401910 [Trifolium subterraneum]
          Length = 1006

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
 Frame = +1

Query: 55  CHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXX--LHSLRKYGYFFSRWVDLDSGCVM 228
           C+ CH+ GH K++CP                        +L    +   +   +DSGC  
Sbjct: 62  CYHCHEPGHFKKDCPQRRGGDSSSAQIAVSEEEGYESAGALTVTSWEPEKSWVMDSGCSC 121

Query: 229 HVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRN 408
           H+C R++YF++L+LK  G + LG+  AC+V G G + +KM D  D +L  V Y+P+++RN
Sbjct: 122 HICPRKEYFETLELKEGGVVRLGNNKACKVQGTGSIRLKMYDDRDFLLKNVRYIPELKRN 181

Query: 409 LIS 417
           LIS
Sbjct: 182 LIS 184


>gb|EOY18934.1| Uncharacterized protein TCM_043452 [Theobroma cacao]
          Length = 166

 Score = 82.0 bits (201), Expect = 7e-17
 Identities = 42/70 (60%), Positives = 50/70 (71%)
 Frame = +1

Query: 208 LDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAY 387
           LDS    H+C ++D FD LQ    G L+LG+ S  +VMG GVV+IKM DGV   LGGVAY
Sbjct: 9   LDSASATHICYQKDCFDLLQEVVVGNLTLGNKSIVKVMGIGVVKIKMFDGVVRSLGGVAY 68

Query: 388 VPKMRRNLIS 417
           VPKMR+NLIS
Sbjct: 69  VPKMRKNLIS 78


>gb|EOY01950.1| Uncharacterized protein TCM_011728 [Theobroma cacao]
          Length = 176

 Score = 80.5 bits (197), Expect = 3e-16
 Identities = 42/70 (60%), Positives = 50/70 (71%)
 Frame = +1

Query: 208 LDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAY 387
           LDS    H+C ++D FD LQ   AG L+LG+ S  +VMG  VV+IKM DGV   LGGVAY
Sbjct: 9   LDSASATHICYQKDCFDLLQEGVAGNLTLGNKSIVKVMGIRVVKIKMFDGVVRSLGGVAY 68

Query: 388 VPKMRRNLIS 417
           VPKMR+NLIS
Sbjct: 69  VPKMRKNLIS 78


>gb|KYP74267.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 411

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
 Frame = +1

Query: 49  IGCHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXXLHSLRKYGYFFSRWVD-LDSGCV 225
           I C++C   GHI ++CP                    L      G   +   D +DSGC 
Sbjct: 115 IQCYKCQKVGHIMKHCPEKGAKESRIQETTYVVEA--LEEYESAGVLVASSDDVMDSGCT 172

Query: 226 MHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRR 405
            H+   +DYF++L+LK  GT+ LG+  ACRV G G V +KM D  + +L  V YVPK++R
Sbjct: 173 YHMFPVKDYFETLELKEYGTVLLGNNKACRVQGIGAVRLKMFDNQEMLLQNVRYVPKLKR 232

Query: 406 NLIS 417
            L+S
Sbjct: 233 KLMS 236


>gb|EOY05822.1| Uncharacterized protein TCM_020722 [Theobroma cacao]
          Length = 218

 Score = 80.9 bits (198), Expect = 5e-16
 Identities = 42/70 (60%), Positives = 50/70 (71%)
 Frame = +1

Query: 208 LDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAY 387
           LDS    H+C ++D FD LQ   AG L+LG+ S  +VMG  VV+IKM DGV   LGGVAY
Sbjct: 51  LDSASATHICYQKDCFDLLQEGMAGNLTLGNKSIVKVMGLAVVKIKMFDGVVLSLGGVAY 110

Query: 388 VPKMRRNLIS 417
           VPKMR+NLIS
Sbjct: 111 VPKMRKNLIS 120


>dbj|GAU51472.1| hypothetical protein TSUD_95870 [Trifolium subterraneum]
          Length = 1682

 Score = 83.6 bits (205), Expect = 6e-16
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
 Frame = +1

Query: 40  GNSIGCHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXXLHSLRKYGYFFSR--WVDLD 213
           G    C+ CH+ GH K++CP                             +     WV +D
Sbjct: 198 GGKFKCYHCHEPGHFKKDCPQRKGGGSSSAQIATSDEGYESAGALTVTSWEPEKIWV-MD 256

Query: 214 SGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVP 393
           SGC  H+C R++YF +L+LK  G + LG+  A +V G G + +KM D  D +L  V Y+P
Sbjct: 257 SGCSDHMCLRKEYFKTLELKEGGVVRLGNNKAGKVQGTGTIRLKMYDDRDFLLKNVRYIP 316

Query: 394 KMRRNLIS 417
           +++RNLIS
Sbjct: 317 ELKRNLIS 324


>gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii]
          Length = 297

 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
 Frame = +1

Query: 55  CHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXXLHSLRKYGYFFSR------------ 198
           C  CH EGH KR+CP                      S+   GY  +             
Sbjct: 136 CFHCHKEGHFKRDCPDRKKKVHEKPKDPGEA------SVASDGYDSAEVLVVTDEDSSKE 189

Query: 199 WVDLDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGG 378
           W+ +DSGC  H+C  + +F++L+    G++ LG+   C+V G G V I+M DG++ IL  
Sbjct: 190 WI-MDSGCSFHMCPTKSWFENLEKTDGGSVLLGNNKPCKVAGIGSVRIRMFDGMERILQQ 248

Query: 379 VAYVPKMRRNLIS 417
           V YVP+++RNLIS
Sbjct: 249 VRYVPELKRNLIS 261


>gb|PRQ56251.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 392

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
 Frame = +1

Query: 52  GCHRCHDEGHIKRNC--------PXXXXXXXXXXXXXXXXXXXXLHSLRKYGYFFSRWVD 207
           GC +C    H+KRNC                             L  +      F  W+ 
Sbjct: 257 GCFKCGATDHLKRNCREGKMRAEAMAGSSNTANVVIKLDKDDGELLVVAASSNAFRNWI- 315

Query: 208 LDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAY 387
           LD+GC  H+C+ R++FD+ +   +G +  GD S+CR++G G V+I+M DGV   L  V Y
Sbjct: 316 LDTGCTFHMCAIREWFDTFEDSSSGEVFRGDDSSCRILGIGSVKIRMHDGVVRTLENVRY 375

Query: 388 VPKMRRNLIS 417
           +PK+R+NLIS
Sbjct: 376 IPKLRKNLIS 385


>gb|KYP64657.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 259

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 35/70 (50%), Positives = 49/70 (70%)
 Frame = +1

Query: 208 LDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAY 387
           +DSGC  H+C ++DYF++L+ K  GT+ LGD   C+V G G V +KM D  ++IL  V Y
Sbjct: 1   MDSGCSYHMCPKKDYFETLKFKEGGTVLLGDDHPCQVQGIGTVRLKMFDNREYILKDVRY 60

Query: 388 VPKMRRNLIS 417
           VP ++RNLIS
Sbjct: 61  VPDLKRNLIS 70


>gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 460

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
 Frame = +1

Query: 40  GNSIGCHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXXLH------SLRKYGYFFSR- 198
           G    C++C + GHI+ +CP                     +      ++ K  Y  S+ 
Sbjct: 227 GKGKQCYKCKEWGHIRPDCPLWKEKDDKGSDCSMTGIAQASNDFGEFLTVSKGNYTCSQR 286

Query: 199 -WVDLDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILG 375
            W+ LD+G   H+CSRR+YFD+ Q  + G ++ GDG+   VMG G V+IKM DG    LG
Sbjct: 287 DWI-LDTGSSHHLCSRREYFDTFQEVK-GFVTWGDGTRRCVMGVGTVKIKMFDGAVRTLG 344

Query: 376 GVAYVPKMRRNLIS 417
            V YVP+ RRNL+S
Sbjct: 345 DVVYVPRFRRNLVS 358


>gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis]
          Length = 1371

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
 Frame = +1

Query: 40  GNSIGCHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXXLH------SLRKYGYFFSR- 198
           G    C++C + GHI+ +CP                     +      ++ K  Y  S+ 
Sbjct: 417 GKGKQCYKCKEWGHIRPDCPLWKEKDDKGSDCSMTGIAQASNDFGEFLTVSKGNYTCSQR 476

Query: 199 -WVDLDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILG 375
            W+ LD+G   H+CSRR+YFD+ Q  + G ++ GDG+   VMG G V+IKM DG    LG
Sbjct: 477 DWI-LDTGSSHHLCSRREYFDTFQEVK-GFVTWGDGTRRCVMGVGTVKIKMFDGAVRTLG 534

Query: 376 GVAYVPKMRRNLIS 417
            V YVP+ RRNL+S
Sbjct: 535 DVVYVPRFRRNLVS 548


>gb|KYP74254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 245

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 34/70 (48%), Positives = 48/70 (68%)
 Frame = +1

Query: 208 LDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAY 387
           +DSGC  H+   +DYF++L+LK  GT+ LG+  ACRV G G V +KM D  + +L  V Y
Sbjct: 1   MDSGCTYHMFPVKDYFETLELKEYGTVLLGNNKACRVQGIGAVRLKMFDNQEMLLQNVRY 60

Query: 388 VPKMRRNLIS 417
           VPK++R L+S
Sbjct: 61  VPKLKRKLMS 70


>gb|EOY12702.1| Uncharacterized protein TCM_031224 [Theobroma cacao]
          Length = 3109

 Score = 77.8 bits (190), Expect = 7e-14
 Identities = 41/63 (65%), Positives = 47/63 (74%)
 Frame = +1

Query: 229  HVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRN 408
            HVC ++DYFD LQ   A  L+LG+ S  +VM  GVVEIKM DGV H LGGVAYV KMR+N
Sbjct: 2132 HVCYQKDYFDLLQEGVARNLTLGNKSIMKVMVLGVVEIKMFDGVMHSLGGVAYVSKMRKN 2191

Query: 409  LIS 417
            LIS
Sbjct: 2192 LIS 2194


>gb|PNX57240.1| copia LTR rider, partial [Trifolium pratense]
          Length = 291

 Score = 76.3 bits (186), Expect = 9e-14
 Identities = 31/70 (44%), Positives = 47/70 (67%)
 Frame = +1

Query: 208 LDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAY 387
           +DSGC  H+C R++YF+ L LK  G + L +  AC++ G G + +KM D  D +L  V Y
Sbjct: 1   MDSGCSYHMCPRKEYFEILDLKEGGVVRLSNNKACKIQGTGTIRLKMFDDRDFLLKNVXY 60

Query: 388 VPKMRRNLIS 417
           +P+++RNLIS
Sbjct: 61  IPELKRNLIS 70


>gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 364

 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
 Frame = +1

Query: 55  CHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXXL--HSLRKYGYFFSRWVDLDSGCVM 228
           C+ C + GH K++CP                    L      +  +   +W+ LDSGC  
Sbjct: 239 CNYCKEPGHWKKDCPKKKGKPSAAVAKEESTSENELVLSIADQPQHSEDQWI-LDSGCSF 297

Query: 229 HVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVPKMRRN 408
           H+C  R +FD+ + K  G + +G+ + C+ +G G ++IKM DG+   L  V +VP++++N
Sbjct: 298 HMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIGIGTIKIKMHDGITRTLTEVRHVPELKKN 357

Query: 409 LIS 417
           LIS
Sbjct: 358 LIS 360


>ref|XP_020582332.1| uncharacterized protein LOC110025962 [Phalaenopsis equestris]
          Length = 975

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 36/72 (50%), Positives = 51/72 (70%)
 Frame = +1

Query: 199 WVDLDSGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGG 378
           W+ LDSGC  H+   + +F+SLQL+  G++ LGD  ACRV+  G ++IKM DG + IL  
Sbjct: 219 WI-LDSGCSFHMRPHKYWFESLQLENGGSVLLGDNKACRVVDSGTIKIKMFDGAERILQH 277

Query: 379 VAYVPKMRRNLI 414
           V YVP+++RNLI
Sbjct: 278 VRYVPELKRNLI 289


>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
          Length = 777

 Score = 75.9 bits (185), Expect = 3e-13
 Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
 Frame = +1

Query: 46  SIGCHRCHDEGHIKRNCPXXXXXXXXXXXXXXXXXXXXLHSLR----KYGYFFSRWVDLD 213
           ++ C+ C+  G I+R CP                      S      +       WV LD
Sbjct: 123 NVKCYHCNKIGQIRRICPDRQQEEKTQAQGSAAIIDDGYDSTEVLTIRLNPNHEEWV-LD 181

Query: 214 SGCVMHVCSRRDYFDSLQLKRAGTLSLGDGSACRVMGFGVVEIKMGDGVDHILGGVAYVP 393
           SGC  H+C RRD+F S Q    G L LG+  +C V+G G + I M DG    L  V +VP
Sbjct: 182 SGCTYHMCPRRDWFSSYQEVNGGKLLLGNNMSCNVVGIGTMAINMHDGKTRTLKEVRHVP 241

Query: 394 KMRRNLIS 417
            ++RNLIS
Sbjct: 242 DLKRNLIS 249