BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00001033
         (3699 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ONL98233.1| Retrovirus-related Pol polyprotein LINE-1 [Zea ma...  1136   0.0  
gb|ONL94081.1| Retrovirus-related Pol polyprotein LINE-1 [Zea ma...  1135   0.0  
gb|ONM55942.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1134   0.0  
gb|AQK98364.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1134   0.0  
gb|ONM54584.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1132   0.0  
gb|ONM03863.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1131   0.0  
gb|ONM55524.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1130   0.0  
gb|AQK92036.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1129   0.0  
gb|ONM52836.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1125   0.0  
gb|ONL92524.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1122   0.0  
gb|AQK86945.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1120   0.0  
gb|AQL03708.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1120   0.0  
gb|ONM32720.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1120   0.0  
gb|ONM38170.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1119   0.0  
gb|ONM06616.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1116   0.0  
gb|AQK78701.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1116   0.0  
gb|AQK84025.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1115   0.0  
gb|AQK43188.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1113   0.0  
gb|AQK65817.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1110   0.0  
gb|AQK72949.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]  1108   0.0  

>gb|ONL98233.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
 gb|AQK53188.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1136 bits (2938), Expect = 0.0
 Identities = 542/989 (54%), Positives = 724/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVVKN Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVKNEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFFKKR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFKKRQSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQHRL+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHRLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F K ++E   W  E+ A+  W  + T ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKKRVIEEGPWAGEEDANIMWRKMATCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +AY+D Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAYDDLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK E+IK+RW+ YFN LFN    NE    EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKSEEIKNRWKEYFNKLFNGG--NESATIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +  +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRANRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             +P CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  VLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS++++ G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDHRVPRKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAADRKGWKCAIHVPEP 1016


>gb|ONL94081.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
 gb|ONM09892.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
 gb|ONM36701.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
 gb|AQK59578.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1135 bits (2935), Expect = 0.0
 Identities = 541/989 (54%), Positives = 724/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVVKN Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVKNEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFFKKR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFKKRQSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F K ++E   W  E+ A+  W  + T ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKKRVIEEGPWAGEEDANIMWRKMATCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +AY+D Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAYDDLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK E+IK+RW+ YFN LFN    NE    EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKSEEIKNRWKEYFNKLFNGG--NESATIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +  +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRANRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             +P CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  VLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS++++ G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDHRVPRKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAADRKGWKCAIHVPEP 1016


>gb|ONM55942.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1134 bits (2932), Expect = 0.0
 Identities = 541/989 (54%), Positives = 724/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVVKN Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVKNEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFFKKR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFKKRQFHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F K ++E   W  E+ A+  W  + T ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKKRVIEEGPWAGEEDANIMWRKMATCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +AY+D Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAYDDLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK E+IK+RW+ YFN LFN    NE    EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKSEEIKNRWKEYFNKLFNGG--NESATIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +  +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRANRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             +P CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  VLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS++++ G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDHRVPRKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAADRKGWKCAIHVPEP 1016


>gb|AQK98364.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1134 bits (2932), Expect = 0.0
 Identities = 541/989 (54%), Positives = 724/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVVKN Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVKNEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFFKKR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFKKRQSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F K ++E   W  E+ A+  W  + T ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKKRVIEEGPWAGEEDANIMWRKMATCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +AY+D Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAYDDLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK E+IK+RW+ YFN LFN    NE    EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKSEEIKNRWKEYFNKLFNGG--NESATIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +  +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRANRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             +P CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  VLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS++++ G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVCLDGQVVPKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDHRVPRKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAADRKGWKCAIHVPEP 1016


>gb|ONM54584.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1132 bits (2928), Expect = 0.0
 Identities = 540/989 (54%), Positives = 724/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVVKN Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVKNEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFFKKR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFKKRQSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F K ++E   W  E+ A+  W  + T ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKKRVIEEGPWAGEEDANIMWRKMATCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +AY+D Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAYDDLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK E+IK+RW+ YFN LFN    NE    EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKSEEIKNRWKEYFNKLFNGG--NESATIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +  +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWE VIE R+R  TS+ 
Sbjct: 575  IFRANRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWEIVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             +P CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  VLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS++++ G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDHRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW+TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWSTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAADRKGWKCAIHVPEP 1016


>gb|ONM03863.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1131 bits (2926), Expect = 0.0
 Identities = 539/989 (54%), Positives = 723/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVVKN Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVKNEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFFKKR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFKKRQSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K + + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHSKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F K ++E   W  E+ A+  W  + T ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKKRVIEEGPWAGEEDANIMWRKMATCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +AY+D Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAYDDLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK E+IK+RW+ YFN LFN    NE    EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKSEEIKNRWKEYFNKLFNGG--NESATIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +  +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRANRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             +P CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  VLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS++++ G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDHRVPRKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+T IRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTTIRPAMLYGAECWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAADRKGWKCAIHVPEP 1016


>gb|ONM55524.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1038

 Score = 1130 bits (2923), Expect = 0.0
 Identities = 539/989 (54%), Positives = 723/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVVKN Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 61   LHRRPGVVKNEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 120

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 121  ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 180

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 181  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 240

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFFKKR  HL+TF SG + SQID+
Sbjct: 241  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFKKRQSHLVTFSSGQHTSQIDF 300

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 301  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 358

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F K ++E   W  E+ A+  W  + T ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 359  VAQTFKKRVIEEGPWAGEEDANIMWRKMATCIRKIASEEFGLSQGNRREVKDTWWWNEDV 418

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +AY+D Y++LDTK+GEKD
Sbjct: 419  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAYDDLYQRLDTKQGEKD 478

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK E+IK+RW+ YFN LFN    NE    EL
Sbjct: 479  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKSEEIKNRWKEYFNKLFNGG--NESATIEL 536

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 537  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 596

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +  +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 597  IFRANRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 656

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 657  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 716

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALS YLF L+IDE+T+ +Q 
Sbjct: 717  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSTYLFALVIDEVTRDIQG 776

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             +P CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 777  VLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 835

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS++++ G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 836  GDVSLDGQVVPKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDHRVPRKL 895

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPA+LYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 896  KGKFYRTAIRPAILYGAECWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRERVG 955

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 956  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 1009

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 1010 KRDLKEWNIDKELAADRKGWKCAIHVPEP 1038


>gb|AQK92036.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1129 bits (2920), Expect = 0.0
 Identities = 539/989 (54%), Positives = 722/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVVKN Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVKNEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVTSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFFKKR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFKKRQSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK D   C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDMHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E  A+  W  + T ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERVIEEGPWAGEGDANIMWRKMATCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +AY+D Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAYDDLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK E+IK+RW+ YFN LFN    NE    EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKSEEIKNRWKEYFNKLFNGG--NESATIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQKYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +  +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRANRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             +P CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  VLPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS++++ G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDTRVPRKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLGVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAADRKGWKCAIHVPEP 1016


>gb|ONM52836.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1125 bits (2910), Expect = 0.0
 Identities = 536/989 (54%), Positives = 726/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E  ++  W  +   ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERVIEEGPWAEEGDSNIMWRKMAMCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKLTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  DIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAVDRKGWKCAIHVPEP 1016


>gb|ONL92524.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1122 bits (2903), Expect = 0.0
 Identities = 535/989 (54%), Positives = 724/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   + R+GSWNIG+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLHLPRRVQRVRKLVEPTRVRVGSWNIGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E   +  W  +   ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERVIEEGPWAEEGDINIMWRKMVVCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  ++A+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKQAVSRARGQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  DIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSATG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I+KDV+HRI+AGW KWR A+ +LCD ++P K+
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDKDVSHRIKAGWLKWRQAAGVLCDPRVPHKI 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RR  +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRSEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAMDRKGWKCAIHVPEP 1016


>gb|AQK86945.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1120 bits (2898), Expect = 0.0
 Identities = 534/989 (53%), Positives = 724/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++  G+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGPGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLRRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E  ++  W  +   ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERVIEEGPWAEEGDSNIMWRKMAMCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKLTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R  V+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  DIPWCMLFADDVVLIEESRSDVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAVDRKGWKCAIHVPEP 1016


>gb|AQL03708.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1120 bits (2897), Expect = 0.0
 Identities = 534/989 (53%), Positives = 723/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+CIQETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCIQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E   +  W  +   ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERVIEEGPWAEEGDINIMWRKMAVCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+K IKDE   +LVK+E+IK+RW+ YFN LFN    +     EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKFIKDEANQLLVKNEEIKNRWKEYFNKLFNGGSESSTI--EL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLGG+ I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGGIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L++DE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVMDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS   R  +
Sbjct: 755  DIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSA-MRYED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RR  +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRSEEAPVHIGIIRRPE------NVKRGRGRPTLTWSEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAVDRKGWKCAIHVPEP 1016


>gb|ONM32720.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1120 bits (2897), Expect = 0.0
 Identities = 534/989 (53%), Positives = 724/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+   VV+N Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPSVVENEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++SVYAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISVYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E  ++  W  +   ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERVIEEGPWAEEGDSNIMWRKMAMCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRAQGQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL  MK G+A+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKMMKVGRAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKLTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAISLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  DIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ V EMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVTEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAVDRKGWKCAIHVPEP 1016


>gb|ONM38170.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1038

 Score = 1119 bits (2895), Expect = 0.0
 Identities = 536/989 (54%), Positives = 722/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   + R+GSWN+G+LT K  E+VDI  RR ++
Sbjct: 61   LHRRPGVVENEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTCKLREIVDIAVRRRVN 120

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G     NGVG+++D    D VV V R GDRII 
Sbjct: 121  ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNNNGVGVLIDKSLKDGVVDVKRVGDRIIL 180

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 181  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 240

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 241  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 300

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 301  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 358

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E   +  W  +   ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 359  VAQTFKERVIEEGPWAEEGDINIMWRKMAVCIRKIASEEFGLSQGNRREVKDTWWWNEDV 418

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 419  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRAQGQAFDNLYQRLDTKQGEKD 478

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 479  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 536

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 537  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 596

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 597  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 656

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 657  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 716

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 717  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFTLVIDEVTRDIQG 776

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 777  DIPWCMLFADDVVLIEESRSGVSQKLELWRKTLEAKGFRLSRSKTEYMKCDFSATG-YED 835

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 836  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 895

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFYKTAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 896  KGKFYKTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 955

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RR  +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 956  VAPIEEKLMQHRLRWFGHIQRRSEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 1009

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 1010 KRDLKEWNIDKELAMDRKGWKCAIHVPEP 1038


>gb|ONM06616.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1116 bits (2887), Expect = 0.0
 Identities = 532/989 (53%), Positives = 722/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + +QH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVSQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E   +  W  +   ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERIIEEGPWAEEGDTNIMWRKMAVCIRKIASEEFGLSQGNRKEVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CL  + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLRDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  T + 
Sbjct: 575  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTCVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  DIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RR  +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRSEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAVDRKGWKCAIHVPEP 1016


>gb|AQK78701.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1116 bits (2886), Expect = 0.0
 Identities = 531/989 (53%), Positives = 723/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRLVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  + NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFLANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + +QH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVSQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E   +  W  +   ++KIA E +G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERIIEEGPWAEEGDTNIMWRKMAVCIRKIASEEVGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  T + 
Sbjct: 575  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTCVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLIDE+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  DIPWCMLFADDVVLIDESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRM RW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMWRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RR  +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRSEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+   +I++ +A DRK W+    + +P
Sbjct: 988  KRDLKEWDIDKELAVDRKGWKCATHVPEP 1016


>gb|AQK84025.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1115 bits (2884), Expect = 0.0
 Identities = 531/989 (53%), Positives = 722/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STSFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L  K DR  C +CKVIPGE + TQH+L+V D     I L++ K N + R KWW LK  +
Sbjct: 279  VLLIKEDRHACLDCKVIPGECVVTQHKLVVADF-CFKIRLQQNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E   +  W  +   ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERVIEEGPWAEEGDINIMWRKMAVCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+++A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARSQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKMTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  DIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSATG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+T IRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTTIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ +R  +APV     RR E       +KRGRGRP  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQQRSEEAPVHIGIIRRPE------NVKRGRGRPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAMDRKGWKCAIHVPEP 1016


>gb|AQK43188.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1113 bits (2880), Expect = 0.0
 Identities = 531/989 (53%), Positives = 721/989 (72%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIRKYRI--GSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   R+  GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLHLPRRVRRVRKLVEPTRVHVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            + ++E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STNFEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+  D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVAADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E  ++  W  +   ++KIA E  G+S GN+   K+ WWWN+++
Sbjct: 337  VAQTFKERVIEEGPWAEEGDSNIMWRKMAMCIRKIASEEFGLSQGNRREVKDIWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  EN+++Y+ AKK  +RA+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAENIEKYRIAKKSAKRAVSRARGQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCI DE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCINDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK G A+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGNAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEW++S L+PI+KNKGD+Q+C NYRGIKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 575  IFRTNRMPDEWQRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMKLWERVIEHRLRKLTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  DIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAECWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KRGRGRP   W EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRGRGRPTLMWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELAVDRKGWKCAIHVPEP 1016


>gb|AQK65817.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1016

 Score = 1110 bits (2870), Expect = 0.0
 Identities = 530/989 (53%), Positives = 721/989 (72%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   H  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLHLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTATNKNGVGVLIDKSLKDGVVDVKRVGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V+G+ ++N++S YAPQVGL++ +K +FWE LE ++ S+P  EK+ IGGDLNGHVG  
Sbjct: 159  VKLVIGDLVLNVISAYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIGGDLNGHVGTS 218

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +   E VHGG+GF +RN EG  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 219  STSSEGVHGGFGFGTRNQEGEEILNFALAYDMFIANTFFRKRTSHLVTFSSGQHTSQIDF 278

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 279  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 336

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E  ++  W  +   ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 337  VAQTFKERVIEEGPWAEEGDSNIMWRKMAMCIRKIASEEFGLSQGNRREVKDTWWWNEDV 396

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  +N+++Y+ AKK  +RA+  A+ +A+++ Y++LDTK+GEKD
Sbjct: 397  QKAIKEKKDCYKRLHHDKCAQNIEKYRIAKKSAKRAVSRARGQAFDNLYQRLDTKQGEKD 456

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKDE   +LVK+E+IK+RW+ YFN LFN    NE +  EL
Sbjct: 457  IYRMAKIRERKTRDVNQVKCIKDEANQLLVKNEEIKNRWKEYFNKLFNGG--NESSTIEL 514

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 515  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEVWRCLGDIAIVWLTKLFNT 574

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYRGIKL+SHTM LWERVIE R+R  TS+ 
Sbjct: 575  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRGIKLMSHTMTLWERVIEHRLRKLTSVT 634

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V R +MW  LEK  
Sbjct: 635  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPRSVMWWALEKHK 694

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G + +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 695  VATKYINLIKDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 754

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGF +SR+KTEYM+C FS      +
Sbjct: 755  DIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMG-YED 813

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V    +F+YLGS+++++G+I++DV+HRI+AGW KWR A+ +LCD ++P KL
Sbjct: 814  GDVSLDGQVVPKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKL 873

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAE W TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 874  KGKFYRTAIRPAMLYGAEYWPTKRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRERVG 933

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RR E       +KR RG+P  TW EA+
Sbjct: 934  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPE------NVKRDRGQPTLTWTEAV 987

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +  DRK W+  I + +P
Sbjct: 988  KRDLKEWNIDKELVVDRKGWKCAIHVPEP 1016


>gb|AQK72949.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
          Length = 1014

 Score = 1108 bits (2867), Expect = 0.0
 Identities = 534/989 (53%), Positives = 722/989 (73%), Gaps = 9/989 (0%)
 Frame = +3

Query: 720  LHKGLGVVKNTQEPSHTNKRNTNDNKKIR--KYRIGSWNIGTLTGKTIELVDIMKRRNID 893
            LH+  GVV+N Q   +  +R     K +   + R+GSWN+G+LTGK  E+VD+  RR ++
Sbjct: 39   LHRRPGVVENEQGSLYLPRRVRRVRKLVEPTRVRVGSWNVGSLTGKLREIVDVAVRRRVN 98

Query: 894  IMCIQETKWVGEKAKTLDTTGYKLWYSGKDRTRNGVGIIVDPLFIDQVVGVTRKGDRIIS 1073
            I+C+QETKW G+KAK ++ TG+KLWY+G    +NGVG+++D    D VV V R GDRII 
Sbjct: 99   ILCVQETKWKGQKAKEVEGTGFKLWYTGTAANKNGVGVLIDKSLKDGVVDVKRLGDRIIL 158

Query: 1074 LKIVVGNELINIVSVYAPQVGLDDATKAKFWEDLETLMQSIPQNEKVIIGGDLNGHVGKD 1253
            +K+V G+ ++N++SVYAPQVGL++ +K +FWE LE ++ S+P  EK+ IG DLNGHVG  
Sbjct: 159  VKLVNGDLVLNVISVYAPQVGLNENSKREFWEGLEDMVSSVPVGEKLFIG-DLNGHVGTS 217

Query: 1254 NEDYERVHGGYGFSSRNNEGRTILDFAVAYDFIIGNTFFKKRDEHLITFKSGPNKSQIDY 1433
            +  +E VHGG+GF +RN +G  IL+FA+AYD  I NTFF+KR  HL+TF SG + SQID+
Sbjct: 218  STSFEGVHGGFGFRTRN-QGEEILNFALAYDMFIANTFFRKRKSHLVTFSSGQHISQIDF 276

Query: 1434 FLTRKNDRKICKNCKVIPGESLTTQHRLLVLDIKLINIHLKRKKIN-IPRIKWWNLKNIE 1610
             L RK DR  C +CKVIPGE + TQH+L+V D +   I L+R K N + R KWW LK  +
Sbjct: 277  VLLRKEDRHACLDCKVIPGECVVTQHKLVVADFRF-KIRLQRNKHNKVTRTKWWKLKG-D 334

Query: 1611 KRDSFVKSLVETIDWKVEDKADETWNYVTTQMKKIAKETLGVSNGNKWN-KESWWWNQEI 1787
               +F + ++E   W  E  A+  W  + T ++KIA E  G+S GN+   K++WWWN+++
Sbjct: 335  VAQTFKERVIEEGPWAEEGDANIMWRKMVTCIQKIASEEFGLSQGNRREVKDTWWWNEDV 394

Query: 1788 QEKVKEKRTSYKVLYSCKNEENLKRYKDAKKEVRRAIYEAKTKAYEDFYKKLDTKEGEKD 1967
            Q+ +KEK+  YK L+  K  +N+ +Y  AKK  +RA+  A+ +AY+D Y++LDTK+GEKD
Sbjct: 395  QKAIKEKKDCYKRLHHDKCADNIDKYMIAKKSAKRAVSRARGQAYDDLYQRLDTKQGEKD 454

Query: 1968 IYKIAKFREKQTRDLTQIKCIKDENENILVKDEDIKDRWRRYFNNLFNEPKRNEVTLGEL 2147
            IY++AK RE++TRD+ Q+KCIKD+   +LVK+++IK++W+ YFN LFN    NE +  EL
Sbjct: 455  IYRMAKIRERKTRDVNQVKCIKDQGNQLLVKNQEIKNKWKEYFNKLFNGG--NESSTVEL 512

Query: 2148 GQSELNRNRTFYRRIQLHETEKALNKMKTGKAVGLDDIPIEAWKCLGGVGISWLTKLFNV 2327
             +   + NR F RRIQ +E ++AL +MK GKA+G D IPIE W+CLG + I WLTKLFN 
Sbjct: 513  DEPFDDNNRGFVRRIQEYEVKEALKRMKVGKAMGPDGIPIEEWRCLGDIAIVWLTKLFNT 572

Query: 2328 ILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSIL 2507
            I +T +MPDEWR+S L+PI+KNKGD+Q+C NYR IKL+SHTMKLWERVIE R+R  TS+ 
Sbjct: 573  IFRTNRMPDEWRRSTLVPIFKNKGDVQSCTNYRRIKLMSHTMKLWERVIEHRLRKMTSVT 632

Query: 2508 DNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRG 2687
             NQFGFMPGRST+EAI L+R+L E++ E+K+DLHMVFIDLEKAYD+V + +MW  LEK  
Sbjct: 633  QNQFGFMPGRSTMEAIFLLRQLMERFREQKKDLHMVFIDLEKAYDKVPKSVMWWALEKHK 692

Query: 2688 IKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQK 2867
            +   YI+ IKDMY  + T +RT  G   +FP  IGLHQGSALSPYLF L+IDE+T+ +Q 
Sbjct: 693  VSTKYINLIKDMYTNVVTSVRTSDGDIDDFPINIGLHQGSALSPYLFALVIDEVTRDIQG 752

Query: 2868 SIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNE 3047
             IP CMLFADD+VLI+E+R GV+ KLE+WR+ LE+KGFT+SR+KTEYM+C FS      +
Sbjct: 753  DIPWCMLFADDVVLIEESRSGVSQKLELWRQTLEAKGFTLSRSKTEYMKCDFSAMG-YED 811

Query: 3048 TKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKL 3227
              V +DG  V     F+YLGS++++ G+I++DV+HRI+AGW KWR A+ +L D ++P KL
Sbjct: 812  GDVSLDGQVVPKKDIFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLYDPRVPHKL 871

Query: 3228 KGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVG 3407
            KGKFY+TAIRPAMLYGAECW TK  H Q++ VAEMRMLRW+CGHTR DR+RN+ IR +VG
Sbjct: 872  KGKFYRTAIRPAMLYGAECWPTKIRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRERVG 931

Query: 3408 VAPIDEKIRETRLRWFGHVYRRPLDAPV-----RRLEGRESLTQIKRGRGRPKKTWKEAI 3572
            VAPI+EK+ + RLRWFGH+ RRP +APV     RRLE       +KRGRGRP  TW EA+
Sbjct: 932  VAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRLE------NVKRGRGRPTLTWTEAV 985

Query: 3573 KHDMLYLEINENMAYDRKRWRDMIRIADP 3659
            K D+    I++ +A DRKRW+  I + +P
Sbjct: 986  KRDLKEWNIDKELAVDRKRWKSAIHVPEP 1014