BLASTX nr result
ID: Rehmannia32_contig00000354
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia32_contig00000354
(732 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis] 71 7e-26
gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinen... 71 7e-26
gb|AJE29370.1| putative gag protein [Coffea canephora] 72 1e-23
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo... 47 2e-17
gb|KYP36396.1| Retrovirus-related Pol polyprotein from transposo... 47 2e-17
gb|PRQ56251.1| putative RNA-directed DNA polymerase [Rosa chinen... 48 5e-17
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro... 48 7e-17
gb|KYP61706.1| Retrovirus-related Pol polyprotein from transposo... 44 6e-16
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 50 3e-14
ref|XP_008374307.1| PREDICTED: 4-coumarate--CoA ligase-like 9 [M... 67 3e-14
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 44 9e-14
gb|KYP46255.1| Retrovirus-related Pol polyprotein from transposo... 44 9e-14
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc... 47 1e-13
gb|KYP47563.1| Retrovirus-related Pol polyprotein from transposo... 44 1e-13
gb|KYP62384.1| Retrovirus-related Pol polyprotein from transposo... 46 2e-13
gb|KYP65226.1| Retrovirus-related Pol polyprotein from transposo... 42 5e-13
gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus] 44 2e-12
gb|PNX90687.1| cytochrome p450, partial [Trifolium pratense] 45 4e-12
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 39 4e-12
gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subc... 47 7e-12
>gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis]
Length = 1371
Score = 70.9 bits (172), Expect(4) = 7e-26
Identities = 41/96 (42%), Positives = 62/96 (64%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQ 236
+DQL KV VK+EEED+ALLLL S+PDSY++++TT+LYGK T ++++LL+H+K+R+
Sbjct: 322 VDQLAKVDVKIEEEDQALLLLTSLPDSYENIITTILYGK-DTLKMEEVESTLLNHEKRRK 380
Query: 237 TRRRDMDMLWLLGK*IGNGRDSGGGSVISRSDSRTR 344
+ + + + G S SRS SR R
Sbjct: 381 ADDSQISVFVAQDQNRWGRSTARGSSGHSRSKSRGR 416
Score = 45.4 bits (106), Expect(4) = 7e-26
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
G+G VKIKM DG RTLG V YVP+ R NL+S
Sbjct: 517 GVGTVKIKMFDGAVRTLGDVVYVPRFRRNLVS 548
Score = 43.1 bits (100), Expect(4) = 7e-26
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +1
Query: 472 YLTVSTRIDTSSRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
+LTVS T S+ WILD+G H+ SRR+YFD Q + G + GDG+ +MG+
Sbjct: 463 FLTVSKGNYTCSQRDWILDTGSSHHLCSRREYFDTFQ-EVKGFVTWGDGTRRCVMGV 518
Score = 26.6 bits (57), Expect(4) = 7e-26
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 335 KDQGKGVVCYRYHVEGHFKRNCPRRKK 415
+ +GKG CY+ GH + +CP K+
Sbjct: 414 RGRGKGKQCYKCKEWGHIRPDCPLWKE 440
>gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 460
Score = 70.9 bits (172), Expect(4) = 7e-26
Identities = 41/96 (42%), Positives = 62/96 (64%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQ 236
+DQL KV VK+EEED+ALLLL S+PDSY++++TT+LYGK T ++++LL+H+K+R+
Sbjct: 132 VDQLAKVDVKIEEEDQALLLLTSLPDSYENIITTILYGK-DTLKMEEVESTLLNHEKRRK 190
Query: 237 TRRRDMDMLWLLGK*IGNGRDSGGGSVISRSDSRTR 344
+ + + + G S SRS SR R
Sbjct: 191 ADDSQISVFVAQDQNRWGRSTARGSSGHSRSKSRGR 226
Score = 45.4 bits (106), Expect(4) = 7e-26
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
G+G VKIKM DG RTLG V YVP+ R NL+S
Sbjct: 327 GVGTVKIKMFDGAVRTLGDVVYVPRFRRNLVS 358
Score = 43.1 bits (100), Expect(4) = 7e-26
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +1
Query: 472 YLTVSTRIDTSSRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
+LTVS T S+ WILD+G H+ SRR+YFD Q + G + GDG+ +MG+
Sbjct: 273 FLTVSKGNYTCSQRDWILDTGSSHHLCSRREYFDTFQ-EVKGFVTWGDGTRRCVMGV 328
Score = 26.6 bits (57), Expect(4) = 7e-26
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 335 KDQGKGVVCYRYHVEGHFKRNCPRRKK 415
+ +GKG CY+ GH + +CP K+
Sbjct: 224 RGRGKGKQCYKCKEWGHIRPDCPLWKE 250
>gb|AJE29370.1| putative gag protein [Coffea canephora]
Length = 433
Score = 72.4 bits (176), Expect(3) = 1e-23
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = +1
Query: 475 LTVSTRIDTSSRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
LT+S +TSSRD WILDSGC+ HV SR DYFD LQ ++AG + GDGS C++ G+
Sbjct: 269 LTISKGNNTSSRDGWILDSGCVSHVCSRLDYFDTLQRKKAGFMCLGDGSTCQVKGV 324
Score = 48.9 bits (115), Expect(3) = 1e-23
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
G+GVVKIKM +G R+LGGVAYVPK+R NLIS
Sbjct: 323 GVGVVKIKMLNGEIRSLGGVAYVPKLRRNLIS 354
Score = 37.4 bits (85), Expect(3) = 1e-23
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +2
Query: 224 KKKANQEEGHGYALVAREMNR*REGFWWWICNQQVRFKDQGKGVVCYRYHVEGHFKRNCP 403
++KANQ+ AL+AR N+ + F + K +G G+ C+ H GH KR CP
Sbjct: 188 QRKANQDVTQEAALIARGENKRGKQFGGESKAGGSKAKRKG-GIQCFGCHEFGHIKRYCP 246
Query: 404 RRKK 415
+KK
Sbjct: 247 HQKK 250
Score = 67.4 bits (163), Expect = 3e-09
Identities = 45/97 (46%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQ 236
LDQL KVGV +EEE+KALLLL + DSY+S+VTTLLYGK T +++SLL H+K+R+
Sbjct: 132 LDQLQKVGVDIEEENKALLLLTPVSDSYESVVTTLLYGK-DTLEFENVQSSLLDHEKQRK 190
Query: 237 TRRRDMDMLWLL-------GK*IGNGRDSGGGSVISR 326
+ L+ GK G G GGS R
Sbjct: 191 ANQDVTQEAALIARGENKRGKQFG-GESKAGGSKAKR 226
>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 780
Score = 47.0 bits (110), Expect(4) = 2e-17
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +1
Query: 517 WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
W++DSGC H+ ++DYF+ L+L+ G + GD C++ G+
Sbjct: 286 WVMDSGCSYHMCPKKDYFETLKLKEGGTVLLGDDHPCQVQGI 327
Score = 46.2 bits (108), Expect(4) = 2e-17
Identities = 29/99 (29%), Positives = 50/99 (50%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQ 236
LD L + V++E+EDKALLLL S+P +Y+ +LYGK ++ S+ + + +RQ
Sbjct: 129 LDDLENIEVQLEDEDKALLLLNSLPRNYEHFKDAILYGKEQDITLDEVQTSIRTKELQRQ 188
Query: 237 TRRRDMDMLWLLGK*IGNGRDSGGGSVISRSDSRTRERV 353
+ D L + GR G +R++ ++
Sbjct: 189 QDNKTDDNGESLN--VSRGRSEKKGQSQKGKKARSKSKI 225
Score = 32.7 bits (73), Expect(4) = 2e-17
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GIG V++KM D + L V YVP ++ NLIS
Sbjct: 326 GIGTVRLKMFDNREYILKDVRYVPDLKRNLIS 357
Score = 30.8 bits (68), Expect(4) = 2e-17
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 359 CYRYHVEGHFKRNCPRRKK 415
C+ H GHFK+NCP R +
Sbjct: 233 CFYCHKVGHFKKNCPERNR 251
>gb|KYP36396.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 485
Score = 47.0 bits (110), Expect(4) = 2e-17
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +1
Query: 517 WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
W++DSGC H+ ++DYF+ L+L+ G + GD C++ G+
Sbjct: 232 WVMDSGCSYHMCPKKDYFETLKLKEGGTVLLGDDHPCQVQGI 273
Score = 46.2 bits (108), Expect(4) = 2e-17
Identities = 29/99 (29%), Positives = 50/99 (50%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQ 236
LD L + V++E+EDKALLLL S+P +Y+ +LYGK ++ S+ + + +RQ
Sbjct: 75 LDDLENIEVQLEDEDKALLLLNSLPRNYEHFKDAILYGKEQDITLDEVQTSIRTKELQRQ 134
Query: 237 TRRRDMDMLWLLGK*IGNGRDSGGGSVISRSDSRTRERV 353
+ D L + GR G +R++ ++
Sbjct: 135 QDNKTDDNGESLN--VSRGRSEKKGQSQKGKKARSKSKI 171
Score = 32.7 bits (73), Expect(4) = 2e-17
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GIG V++KM D + L V YVP ++ NLIS
Sbjct: 272 GIGTVRLKMFDNREYILKDVRYVPDLKRNLIS 303
Score = 30.8 bits (68), Expect(4) = 2e-17
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 359 CYRYHVEGHFKRNCPRRKK 415
C+ H GHFK+NCP R +
Sbjct: 179 CFYCHKVGHFKKNCPERNR 197
>gb|PRQ56251.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 392
Score = 48.1 bits (113), Expect(4) = 5e-17
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +1
Query: 517 WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
WILD+GC H+ + R++FD + +G +F GD S CRI+G+
Sbjct: 314 WILDTGCTFHMCAIREWFDTFEDSSSGEVFRGDDSSCRILGI 355
Score = 45.1 bits (105), Expect(4) = 5e-17
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GIG VKI+M DGV RTL V Y+PK+R NLIS
Sbjct: 354 GIGSVKIRMHDGVVRTLENVRYIPKLRKNLIS 385
Score = 41.6 bits (96), Expect(4) = 5e-17
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +3
Query: 66 LGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQTRR 245
L KV V ++E+KAL+LL S+P S++ +T L+ GK G +A K R+T
Sbjct: 160 LSKVDVMYKDEEKALMLLRSLPASFEHFITRLVSGKDSLKYGEITEAIQSYFKMSRETES 219
Query: 246 RDMDMLWLLGK 278
+ + GK
Sbjct: 220 SQEGGIHVKGK 230
Score = 20.8 bits (42), Expect(4) = 5e-17
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = +2
Query: 359 CYRYHVEGHFKRNCPRRK 412
C++ H KRNC K
Sbjct: 258 CFKCGATDHLKRNCREGK 275
>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
Length = 1309
Score = 48.1 bits (113), Expect(4) = 7e-17
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Frame = +3
Query: 66 LGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLS---HKKKRQ 236
L V +K+ +ED A+L+L+S+P SY+ V T+LYGK T A +K++L S HKK
Sbjct: 131 LKNVDIKITDEDCAILMLSSLPRSYEHFVDTMLYGK-ETLTMAEVKSALNSKELHKKNET 189
Query: 237 TRRRDMDMLWLLGK*I-GNGRDSGGGSVISRSDSRTRERV 353
+ L + G+ R+ GG RS SRTR ++
Sbjct: 190 KMESTGEGLNVRGRTYKRESRNEKGGK--HRSQSRTRGKL 227
Score = 40.0 bits (92), Expect(4) = 7e-17
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 499 TSSRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
T+ +D W++DSGC H+ + +F L + +G + G+ C++MG+
Sbjct: 277 TNKQDCWVMDSGCSFHMCPIKSWFQNLVEEESGHVLLGNNRECKVMGI 324
Score = 36.2 bits (82), Expect(4) = 7e-17
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GIG V +KM DG RT+ V YVP +R NL+S
Sbjct: 323 GIGSVLLKMHDGCVRTITEVRYVPDLRRNLLS 354
Score = 30.4 bits (67), Expect(4) = 7e-17
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 359 CYRYHVEGHFKRNCPRRK 412
C+ H EGHFK++CP R+
Sbjct: 229 CFVCHKEGHFKKDCPDRR 246
>gb|KYP61706.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 295
Score = 44.3 bits (103), Expect(4) = 6e-16
Identities = 22/56 (39%), Positives = 39/56 (69%)
Frame = +3
Query: 66 LGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKR 233
L + VK+++ED+A++LL+S+P ++ V T+LYGK + A +KA+L S + +R
Sbjct: 24 LKSIDVKIDDEDQAIILLSSLPKRFEHFVDTMLYGKASL-IMAEVKATLNSKEIQR 78
Score = 40.0 bits (92), Expect(4) = 6e-16
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 496 DTSSRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
D + WILDSGC H+ +D+F+ G + G+ C+++G+
Sbjct: 145 DQDTHKEWILDSGCSFHMTPNKDWFETYNQVDGGTVLLGNNKACKVIGI 193
Score = 34.3 bits (77), Expect(4) = 6e-16
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GIG V+++M DG+DR L + +VP++ V L S
Sbjct: 192 GIGSVRLRMFDGMDRVLQDIRHVPELSVGLES 223
Score = 33.1 bits (74), Expect(4) = 6e-16
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 329 RFKDQGKGVVCYRYHVEGHFKRNCPRRK 412
R K +GK C+ EGHFK++CP R+
Sbjct: 109 RSKSKGKNKRCFICDKEGHFKKDCPNRE 136
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 50.1 bits (118), Expect(4) = 3e-14
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Frame = +3
Query: 66 LGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQTRR 245
L VGVKVEEED+A++LL S+P SY++ V T++YG+ +K +L S + ++
Sbjct: 132 LNGVGVKVEEEDQAMILLCSLPSSYENFVDTMMYGRBSISXND-VKDALQSKELQKLVSG 190
Query: 246 RDMDMLWLLGK*IGNGRD---SGGGSVISRSDSRTRERVLY 359
+ + G + GR +GGG S S S+ R +
Sbjct: 191 SEEGSV-ETGLTVSRGRSMERNGGGRSKSXSKSKAAMRCFH 230
Score = 32.3 bits (72), Expect(4) = 3e-14
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
G G V+IKM DG+ RTL YVP +R NLIS
Sbjct: 330 GSGSVQIKMYDGLVRTL-NAWYVPGLRKNLIS 360
Score = 32.0 bits (71), Expect(4) = 3e-14
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 475 LTVSTRIDTSSRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSI 624
LTVST +SS + WILD+G H+ RD F + + DG +
Sbjct: 280 LTVST---SSSAESWILDTGASYHMAYSRDLFTTFKEWNGSVKLGDDGEL 326
Score = 31.2 bits (69), Expect(4) = 3e-14
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 359 CYRYHVEGHFKRNCPRRKKXXXXXXXXXXAVIAAE 463
C+ +GHF++NCP+R+K V+ A+
Sbjct: 228 CFHXKEKGHFRKNCPQRQKGIGXGSNGNAQVVVAQ 262
>ref|XP_008374307.1| PREDICTED: 4-coumarate--CoA ligase-like 9 [Malus domestica]
Length = 599
Score = 67.0 bits (162), Expect(2) = 3e-14
Identities = 36/60 (60%), Positives = 48/60 (80%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQ 236
LDQL KV VKVEEEDKALLLL S+P+SY++LVTTLL+GK L ++ASL+S+ +++
Sbjct: 459 LDQLRKVDVKVEEEDKALLLLTSLPNSYENLVTTLLHGKDTVSL-EQVQASLVSYDTQKK 517
Score = 39.7 bits (91), Expect(2) = 3e-14
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 224 KKKANQEEGHGYALVAREMNR*R---EGFWWWICNQQVRFKDQ--GKGVVCYRYHVEGHF 388
KKK + GH AL + NR R EG + RFK GKG+ CY GH
Sbjct: 516 KKKTIVDGGHETALAVQGWNRGRKLGEG-----SERDNRFKSGSGGKGLQCYNCKEFGHK 570
Query: 389 KRNCPRRKK 415
K+NCP RK+
Sbjct: 571 KKNCPLRKR 579
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 43.5 bits (101), Expect(4) = 9e-14
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGK 173
L +L + VK+E+ED A++LLAS+P SY+S V +L GK
Sbjct: 64 LMELRYIDVKIEDEDAAMILLASLPPSYESFVNSLTVGK 102
Score = 39.3 bits (90), Expect(4) = 9e-14
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GIG ++IKM DGV RTL V +VP ++ NLIS
Sbjct: 254 GIGTIQIKMHDGVIRTLTEVRHVPDLKKNLIS 285
Score = 37.7 bits (86), Expect(4) = 9e-14
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 505 SRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
S + W+LDSGC H+ R +F + + G +F G+ C+ +G+
Sbjct: 210 SAEQWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGI 255
Score = 23.5 bits (49), Expect(4) = 9e-14
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = +2
Query: 224 KKKANQEEGHGYALVAREMNR*REGFWWWICNQQVRFKDQGKGV-------VCYRYHVEG 382
K AN E +G L+A N + G + K+QGK +C G
Sbjct: 122 KASANSEGVNGAGLLA--FNSTKNG---------KKKKEQGKKKTKVNPRDICNYCKEPG 170
Query: 383 HFKRNCPRRK 412
H+K++CP+++
Sbjct: 171 HWKKDCPKKR 180
>gb|KYP46255.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 507
Score = 43.5 bits (101), Expect(4) = 9e-14
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGK 173
L +L + VK+E+ED A++LLAS+P SY+S V +L GK
Sbjct: 37 LMELRYIDVKIEDEDAAMILLASLPPSYESFVNSLTVGK 75
Score = 39.3 bits (90), Expect(4) = 9e-14
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GIG ++IKM DGV RTL V +VP ++ NLIS
Sbjct: 227 GIGTIQIKMHDGVIRTLTEVRHVPDLKKNLIS 258
Score = 37.7 bits (86), Expect(4) = 9e-14
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 505 SRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
S + W+LDSGC H+ R +F + + G +F G+ C+ +G+
Sbjct: 183 SAEQWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGI 228
Score = 23.5 bits (49), Expect(4) = 9e-14
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = +2
Query: 224 KKKANQEEGHGYALVAREMNR*REGFWWWICNQQVRFKDQGKGV-------VCYRYHVEG 382
K AN E +G L+A N + G + K+QGK +C G
Sbjct: 95 KASANSEGVNGAGLLA--FNSTKNG---------KKKKEQGKKKTKVNPRDICNYCKEPG 143
Query: 383 HFKRNCPRRK 412
H+K++CP+++
Sbjct: 144 HWKKDCPKKR 153
>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 415
Score = 46.6 bits (109), Expect(3) = 1e-13
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +3
Query: 66 LGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQTR 242
L K+ VK+++EDKA++LL S+P SY+ +VTTL +GK T I +SLL+ +R +
Sbjct: 133 LSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGK-DTVKTEEIISSLLARDLRRSKK 190
Score = 42.7 bits (99), Expect(3) = 1e-13
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 460 GSWRYLTVSTRIDTSSRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMG 639
GS LTVS D S + W+LDS HV S+R++F + G+++ GDG+ R++G
Sbjct: 260 GSHEILTVS---DEMSGEAWMLDSASSYHVTSKREWFSSYKSGDFGVVYLGDGTSYRVVG 316
Query: 640 L 642
+
Sbjct: 317 V 317
Score = 35.4 bits (80), Expect(3) = 1e-13
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 335 KDQGKGVVCYRYHVEGHFKRNCPRRKK 415
K + KG CY+ H GH +RNCP KK
Sbjct: 216 KSKEKGARCYKCHEFGHIRRNCPLLKK 242
>gb|KYP47563.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 269
Score = 43.5 bits (101), Expect(4) = 1e-13
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Frame = +3
Query: 48 WANLDQL---GKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGK 173
W L++L + VK+E+ED A++LLAS+P SY+S V +L GK
Sbjct: 29 WLKLEKLYMTKDIDVKIEDEDAAMILLASLPPSYESFVNSLSVGK 73
Score = 42.0 bits (97), Expect(4) = 1e-13
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 505 SRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGLE 645
S + W+LDSGC H+ R +F + + +G +F G+ C+I+G+E
Sbjct: 181 SAEQWVLDSGCSYHMCPNRSWFLTYEKKSSGDVFMGNDMACKIIGIE 227
Score = 34.7 bits (78), Expect(4) = 1e-13
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GI ++I+M DGV RTL V +VP ++ NLIS
Sbjct: 225 GIETIQIEMHDGVIRTLTEVRHVPDLKKNLIS 256
Score = 23.5 bits (49), Expect(4) = 1e-13
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = +2
Query: 224 KKKANQEEGHGYALVAREMNR*REGFWWWICNQQVRFKDQGKGVV-------CYRYHVEG 382
K AN E +G L+A N + G + K+QGK + C G
Sbjct: 93 KASANSEGVNGAGLLA--FNSTKNG---------KKKKEQGKKKIKFNPRDICNYCKEPG 141
Query: 383 HFKRNCPRRK 412
H+K++CP+++
Sbjct: 142 HWKKDCPKKR 151
>gb|KYP62384.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 254
Score = 46.2 bits (108), Expect(4) = 2e-13
Identities = 30/98 (30%), Positives = 52/98 (53%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQ 236
L +L + VK+E+ED A++LLAS+P SY+S V +L GK + +K+SL H ++ +
Sbjct: 37 LMELRDIDVKIEDEDAAMILLASLPPSYESFVNSLSVGKECITM-EEVKSSL--HSREFR 93
Query: 237 TRRRDMDMLWLLGK*IGNGRDSGGGSVISRSDSRTRER 350
R GN +S G S++ + + ++
Sbjct: 94 LRAS------------GNSEESNGSSLVVSNSGKNMKK 119
Score = 43.9 bits (102), Expect(4) = 2e-13
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +1
Query: 505 SRD*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
S D WILDSGC H+ R +FD + + G +F G+ + C+ +G+
Sbjct: 182 SEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIGI 227
Score = 28.9 bits (63), Expect(4) = 2e-13
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAY 701
GIG +KIKM DG+ RTL V +
Sbjct: 226 GIGTIKIKMHDGIIRTLTEVRH 247
Score = 23.9 bits (50), Expect(4) = 2e-13
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 356 VCYRYHVEGHFKRNCPRRK 412
+C GH+K++CP++K
Sbjct: 135 ICNYCKEPGHWKKDCPKKK 153
>gb|KYP65226.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 689
Score = 42.0 bits (97), Expect(4) = 5e-13
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 517 WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
WI+DSGC H+ RR +F+ Q G++ GD C+I G+
Sbjct: 268 WIMDSGCSWHMTPRRSWFENFADQADGLVLLGDNKPCKIKGI 309
Score = 38.1 bits (87), Expect(4) = 5e-13
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Frame = +3
Query: 66 LGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLG---AYIKASLLSHKKKRQ 236
L + V +++ED+ALLLL S+P +Y T+L+G+ + A I + L+ +K+++
Sbjct: 109 LENIDVTIDDEDQALLLLCSLPRAYSHFKETMLFGRDSVSIDEVQAAINSKELNERKEKK 168
Score = 36.6 bits (83), Expect(4) = 5e-13
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GIG ++ + DG++R L V YVP ++ NLIS
Sbjct: 308 GIGSIRFRFHDGIERVLADVRYVPDLKRNLIS 339
Score = 24.6 bits (52), Expect(4) = 5e-13
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +2
Query: 335 KDQGKG---VVCYRYHVEGHFKRNCPRR 409
KD G+ + CY EGH ++ CP R
Sbjct: 200 KDGGESTFTIRCYHCKKEGHTRKVCPER 227
>gb|OTG30017.1| putative zinc finger, CCHC-type [Helianthus annuus]
Length = 1308
Score = 43.9 bits (102), Expect(4) = 2e-12
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = +3
Query: 66 LGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQTRR 245
L + V +++EDKA++ LAS+P +++ V TL+YG+ + + A KKR +
Sbjct: 132 LENIDVSIDDEDKAIIFLASLPQTFEHFVDTLMYGRDSLSMEEVLAALNSKELKKRSDAK 191
Query: 246 RDM 254
++
Sbjct: 192 EEI 194
Score = 40.8 bits (94), Expect(4) = 2e-12
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 511 D*WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMG 639
D WILDSG H+ R+YF +++Q G + GD CR+ G
Sbjct: 281 DNWILDSGGSYHMTPHREYFQDIEMQDMGTVKLGDDRTCRVQG 323
Score = 27.3 bits (59), Expect(4) = 2e-12
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 359 CYRYHVEGHFKRNCPRRKK 415
CY + E HFKR+CP R K
Sbjct: 225 CYICNSEKHFKRDCPDRFK 243
Score = 26.9 bits (58), Expect(4) = 2e-12
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
G G V IK+ +G + L V ++P++ N+IS
Sbjct: 323 GQGTVVIKLENGTELKLVNVRFIPELTRNIIS 354
>gb|PNX90687.1| cytochrome p450, partial [Trifolium pratense]
Length = 304
Score = 45.1 bits (105), Expect(3) = 4e-12
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +1
Query: 517 WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMG 639
W++DSGC H+ R++YF++L L+ G++ + C+I G
Sbjct: 245 WVMDSGCSYHMCPRKEYFEILDLKEGGVVRLSNNKACKIQG 285
Score = 39.3 bits (90), Expect(3) = 4e-12
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +3
Query: 57 LDQLGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQ 236
+D L + V +E EDKA LL +P S ++L TLLYGK T ++++L + K
Sbjct: 92 IDDLANIDVIIENEDKAFHLL--LPKSLENLKDTLLYGKEGTITLDEVQSAL---RTKDM 146
Query: 237 TRRRDM 254
T+ RD+
Sbjct: 147 TKMRDL 152
Score = 35.0 bits (79), Expect(3) = 4e-12
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 338 DQGKGVVCYRYHVEGHFKRNCPRRK 412
+ G CY +H HFK+NCP+RK
Sbjct: 188 ENGGKFKCYHFHEPSHFKKNCPQRK 212
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 38.9 bits (89), Expect(4) = 4e-12
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
GIG+VKI+M DG+ R LG V + P + NLIS
Sbjct: 303 GIGMVKIRMHDGIVRALGNVRHTPGLNRNLIS 334
Score = 38.5 bits (88), Expect(4) = 4e-12
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +3
Query: 66 LGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQTRR 245
L KVG K+++ED A++LL S+P + TT+++ K L + + +R+
Sbjct: 106 LEKVGAKMDDEDTAVMLLHSLPPLFKHFKTTMIF-KELITLSKVCENPKSYIRLEREEDS 164
Query: 246 RDMDMLWLLGK*IGNGRDSGGG 311
L++ GK G R+ GGG
Sbjct: 165 SQARGLYVRGKERGRSRNRGGG 186
Score = 35.0 bits (79), Expect(4) = 4e-12
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 517 WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
W LD+ C H + RD+FD + + G+ S RIMG+
Sbjct: 263 WTLDTACTFHTCAHRDWFDTYKEGNTRSVLMGNDSPSRIMGI 304
Score = 25.8 bits (55), Expect(4) = 4e-12
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 335 KDQGKGVVCYRYHVEGHFKRNCPRRKK 415
K +GK C+ Y H+KRNC + K+
Sbjct: 198 KGKGKKDGCFIYGSPDHWKRNCKQWKE 224
>gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 407
Score = 47.4 bits (111), Expect(4) = 7e-12
Identities = 25/59 (42%), Positives = 41/59 (69%)
Frame = +3
Query: 66 LGKVGVKVEEEDKALLLLASIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKKRQTR 242
L K+ V+V++EDKA++ L S+P+SY+ +VTTL YGK T I ++LL+ + R+ +
Sbjct: 118 LVKMDVEVDDEDKAIVFLCSLPESYEHVVTTLTYGK-ETIKTKDITSALLARDQMRKNK 175
Score = 35.8 bits (81), Expect(4) = 7e-12
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3
Query: 636 GIGVVKIKMGDGVDRTLGGVAYVPKMRVNLIS 731
G+G VKIK+ DG + L GV +VP + NLIS
Sbjct: 299 GVGEVKIKLEDGGEHVLQGVRHVPGQKRNLIS 330
Score = 29.6 bits (65), Expect(4) = 7e-12
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 517 WILDSGCIMHVYSRRDYFDLLQLQRAGILFSGDGSICRIMGL 642
WILDS HV R+++F + G ++ GD + +G+
Sbjct: 259 WILDSASSFHVTPRKEWFSSYKSGEFGFVYLGDDTSYPAVGV 300
Score = 24.6 bits (52), Expect(4) = 7e-12
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 323 QVRFKDQGKGVVCYRYHVEGHFKRNCPRRK 412
+V+ + K V C+R GH R CP K
Sbjct: 195 KVKKNKKKKMVQCFRCDEWGHISRECPTLK 224