BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia32_contig00000098
         (8713 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc...  1983   0.0  
gb|AMH87249.1| replicase polyprotein [Citrus leaf blotch virus]      1983   0.0  
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc...  1976   0.0  
gb|AUY61803.1| putative replicase polyprotein [Citrus leaf blotc...  1492   0.0  
gb|AUY61800.1| putative replicase polyprotein [Citrus leaf blotc...  1491   0.0  
gb|AUY61797.1| putative replicase polyprotein [Citrus leaf blotc...  1490   0.0  
gb|AUY61794.1| putative replicase polyprotein [Citrus leaf blotc...  1490   0.0  
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]            1489   0.0  
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus...  1483   0.0  
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]      1466   0.0  
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]      1464   0.0  
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]      1464   0.0  
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]      1461   0.0  
gb|AUZ97243.1| replicase [Actinidia seed-borne latent virus]         1052   0.0  
gb|AKN08994.1| replicase [Caucasus prunus virus]                     1003   0.0  
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc...   947   0.0  
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc...   945   0.0  
gb|AQQ73540.1| replicase [Apricot vein clearing associated virus]     962   0.0  
gb|AKN09002.1| replicase [Apricot vein clearing associated virus]     959   0.0  
ref|YP_008997790.1| replication-associated polyprotein [Apricot ...   944   0.0  

>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1983 bits (5138), Expect = 0.0
 Identities = 1043/2016 (51%), Positives = 1332/2016 (66%), Gaps = 52/2016 (2%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 8338
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 8337 ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 8173
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGGPELFSRNFIKSLEN 178

Query: 8172 RKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 7993
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 7992 QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 7813
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 7812 DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 7633
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 7632 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 7453
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 7452 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 7273
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDD 478

Query: 7272 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW----- 7117
            GYLER++LPF+N      KR+    Y  L  +   E  +  S  K     L+I W     
Sbjct: 479  GYLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKE 537

Query: 7116 ------ISNDHRFVRFSRAVVNSNEVDDKKHFEA-----YTNLMAFLVKEGEMYTGAYIE 6970
                  ISN         A++    +D KK+  +      +N + FL  EG    G  +E
Sbjct: 538  FKVDPFISNSITEFTLLEALLGKR-IDPKKYSYSKQACTLSNYLTFLCAEG--LDGFNLE 594

Query: 6969 QKFDEFLHPDHYCSNSDLEKVEPERDDESGAKR--DKEAEFCNGEEDKIPHHNXXXXXXX 6796
            +  +  L    +   SD E+ E    +++G  +       F N   ++IP          
Sbjct: 595  EHLERRLKAAGH-DTSDDEEEELTSVEQTGPIKILADPLSFMNECLEEIPIETEPSLE-- 651

Query: 6795 XXXXXXXDQCSHGSEKDEHNQPLFDHXXXXXXXXXXXXXXEGSGRTTMHFNQIQYKDMFK 6616
                        G    +++   F+                           I Y D+F 
Sbjct: 652  ----------ERGQFSTDYHSEKFE---------------------------INYNDIFN 674

Query: 6615 RTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDPNSH--LWEL 6442
               C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E +  S+  L E+
Sbjct: 675  PHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEM 733

Query: 6441 IAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCDGHHFMAYET 6274
            I  DG+FME ELIYLF + RG+ +++H      ++V+A   G  EGH+   G+HF+  ET
Sbjct: 734  IRPDGIFMEAELIYLFCVFRGVTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIET 793

Query: 6273 FALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGADYGHNGMMY 6094
            + ++   S  L+  I   +  ++ K+ F    F C  FRGRKAAF +KV ADYGHNGM+Y
Sbjct: 794  YNVSTLTSDPLLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVY 853

Query: 6093 PLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTVNLSGNC 5914
            P N W+PSLDEIIQ C     +N ALI +YE  ++LG HRDNE VY+D  ILTV   G  
Sbjct: 854  PHNSWVPSLDEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEG 913

Query: 5913 IFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVRMMNGDKIEK 5734
             F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR +NG  I  
Sbjct: 914  TFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPI-- 971

Query: 5733 SISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAEC 5554
            +I     KN CLI A S+A+K +++ +   L + N P+W  ++ +  G S++DC    E 
Sbjct: 972  AIREENYKNTCLIDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEA 1031

Query: 5553 LKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKG 5374
            L +++++++     ++  G   + +     HFS +     M R+  SHL  K NV+  +G
Sbjct: 1032 LDVTVDLNVSGKYVVLGKGAFRISMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEG 1091

Query: 5373 LVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELS 5203
              E +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG KYF     L 
Sbjct: 1092 FDEMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHI--LK 1149

Query: 5202 NLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKD 5023
            +  + I   +  + GFAGSGKS+ +Q WL   KK  FCVVSPR  LA+DW FKL L   +
Sbjct: 1150 DRVKQIGIDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNE 1209

Query: 5022 SGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQAR 4843
              KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++LLFDPLQAR
Sbjct: 1210 QRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQAR 1269

Query: 4842 YHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKI 4669
            +H++ D  IL+F+HDVDR+V  + + Y+Y + R++  F R F  D+P  N+ +   + ++
Sbjct: 1270 HHNKMDESILTFEHDVDRLVGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQADRTEEQRL 1327

Query: 4668 WIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSE 4492
            WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF HVCI+LSE
Sbjct: 1328 WIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSE 1387

Query: 4491 STAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKM 4312
            S+AASNE RW VA TR++ R S   + LGG+++F +  K +L   IL GE +  +    M
Sbjct: 1388 SSAASNEFRWMVALTRSRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLM 1447

Query: 4311 IRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQT 4132
            ++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E   + EP CQT
Sbjct: 1448 LKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQT 1506

Query: 4131 HLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSI 3952
            HLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T GP+RFK+I
Sbjct: 1507 HLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAI 1566

Query: 3951 YPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGL 3772
            YPKHS  DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   L+F +DQGL
Sbjct: 1567 YPKHSADDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGL 1626

Query: 3771 LERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQT 3592
            LE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQT
Sbjct: 1627 LEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQT 1686

Query: 3591 LACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDY 3412
            LACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF RDICVESDY
Sbjct: 1687 LACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDY 1746

Query: 3411 EAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLF 3232
            EAFDA QDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLF
Sbjct: 1747 EAFDASQDEYILSFEIHLMKDAHFPRKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLF 1806

Query: 3231 NTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPM 3052
            NTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKAKVERTE PM
Sbjct: 1807 NTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPM 1866

Query: 3051 FCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSER 2872
            FCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSER
Sbjct: 1867 FCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSER 1926

Query: 2871 QIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            Q+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1927 QVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962


>gb|AMH87249.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1979

 Score = 1983 bits (5137), Expect = 0.0
 Identities = 1045/2032 (51%), Positives = 1334/2032 (65%), Gaps = 68/2032 (3%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKR--------IYNPAVETLVSHSEFRNSHFAFAMDPFL 8500
            MAL+SNKTAIE +LGNFEK  ++         IYN A +T++SHSEFRN HFA++++ + 
Sbjct: 1    MALMSNKTAIESILGNFEKKHVRSSSFQQDDAIYNAAAQTILSHSEFRNKHFAYSLNSYQ 60

Query: 8499 KKKLSSIGVELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCI-- 8326
            KK  S +G+EL+PNGYLPHSHP SK  ENH+L+ VLPSV+N    + CSIKE K+     
Sbjct: 61   KKVASKVGIELYPNGYLPHSHPLSKIFENHLLFDVLPSVVNTSRLVMCSIKESKVLVFKN 120

Query: 8325 -----------------VARQNLSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYR-FS 8200
                             +   + + +N +V  +D+SRY E     +  F S  D+   FS
Sbjct: 121  IRDRSRKGTSDISTLDSLKNDHTTFINRLVASKDISRYSEEA---DAFFQSKRDSPELFS 177

Query: 8199 SQAFKTLGKRKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPK 8020
                K+L  ++S FFHDEVHHW+           + +R +F++VYPPE+L  + NSQNPK
Sbjct: 178  KNFIKSLQNKESIFFHDEVHHWTKAQMFSFLKSTKVKRFIFTLVYPPEILKKFANSQNPK 237

Query: 8019 MYTFKIVRDQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFE 7840
            +Y FK+ + +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFE
Sbjct: 238  IYDFKVDKGRLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSVYAHHLFE 297

Query: 7839 IVPGKLISEDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVES 7660
            I  G+L+++   F++D+  +DM  IF +RF+ YD+FP++ +H+YKVYSYLLCLKKPD+ES
Sbjct: 298  ISVGELVTDSKIFFSDYSSIDMSKIFLDRFRSYDVFPISIEHLYKVYSYLLCLKKPDLES 357

Query: 7659 GLAKLRQIIGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVR 7480
            GLAKLRQIIGDDVE+KEFLFFEQ CKR IER TS+G+FGHS F+ L    +   P+   R
Sbjct: 358  GLAKLRQIIGDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFQKLTDMALSSLPNGIAR 417

Query: 7479 WTKTWKCSNIFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNE 7300
                WK  N F+FL+ LGTL ++++R  CY H+LE++ FEVV  D + +LDPL  F  NE
Sbjct: 418  IFPQWKKKNTFEFLFSLGTLVVDIERKVCYEHVLEKWGFEVVITDENAYLDPLSIFAINE 477

Query: 7299 NWNEERIDDGYLERVKLPFFN---YKGDPRKRETYHFLQQQLHRESPMRASGCKEKEPTL 7129
            N+NE+R+DDG+LERV+LPF+N   Y    R+   Y  L  +   +  + +   K     L
Sbjct: 478  NFNEDRVDDGFLERVRLPFWNLSDYDLKRRRMNAYDILSSRFEEDRKIESMQ-KGPNKML 536

Query: 7128 RICW-----------ISND-HRFVRFSRAV---VNSNEVDDKKHFEAYTNLMAFLVKEGE 6994
            +I W           ISN   +F  F   V   VN  +    K     +N + FL  EG 
Sbjct: 537  QIEWYGIKEFEVDPFISNSITKFTLFEALVGKRVNPRKYSYSKQACTLSNYLTFLCAEG- 595

Query: 6993 MYTGAYIEQKFDEFLH------PDHYCSNSD----LEKVEPERDDESGAKRDKEAEFCNG 6844
               G  +E+  +  L       PD      D     E + P   D S   R+   E    
Sbjct: 596  -LDGFNMEEHLERRLKLIGHDTPDDADEEPDGIEHTESISPFFVDPSDLLRECLEETSTE 654

Query: 6843 EEDKIPHHNXXXXXXXXXXXXXXDQCSHGSEKDEHNQPLFDHXXXXXXXXXXXXXXEGSG 6664
               ++   N                     E++E   P+ DH                  
Sbjct: 655  HVHEVSEVNVPP------------------EREELIIPI-DHCPKKF------------- 682

Query: 6663 RTTMHFNQIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSC 6484
                   +I Y DMFK   C   HG  I  P+DGNCFF A  +TFE V+N  E+RSDFS 
Sbjct: 683  -------EINYGDMFKPHNCMNMHGDEIPTPSDGNCFFSAFAETFE-VDNPGELRSDFSN 734

Query: 6483 WLRERDPNS--HLWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCS 6322
            WL   D  S   L + I  DGV+ME ELIYLF + R + +V+H      ++V+A   G  
Sbjct: 735  WLMVFDGGSFAELAKRIEPDGVYMEAELIYLFCVFREVTLVIHDRSQEKENVYAIHSGFE 794

Query: 6321 EGHIFCDGHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAA 6142
            EGH+   G HF+  ET+ +    S  L+  +   +  +L K+ F    F C  FRGRKAA
Sbjct: 795  EGHMVHRGDHFVGIETYRVEDTFSDPLLSDLPCGFSEELTKFHFQPDHFNCAQFRGRKAA 854

Query: 6141 FFSKVGADYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEI 5962
            F +KV ADYGHNGM+YP N W+P LDEIIQ C+    +N ALI +YE  ++LG HRDNE 
Sbjct: 855  FLTKVDADYGHNGMIYPHNSWVPPLDEIIQLCNQGSDFNCALINFYEPNSSLGFHRDNEQ 914

Query: 5961 VYSDSEILTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISI 5782
            VY+D  ILTV  SG  I  +E + + + F M+  +FF+MPKGFQKKARH V     R+SI
Sbjct: 915  VYNDDPILTVCTSGEGIIAIEFKDQTVSFLMTTGTFFLMPKGFQKKARHSVSNKVSRVSI 974

Query: 5781 TFRTHVRMMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIR 5602
            TFR H+R +NG  I  +I     +N CLI A S+++K +++ +   L +AN P+W  ++ 
Sbjct: 975  TFRKHIRRLNGSPI--AIKEENYRNTCLIDAFSKSMKRSKQAIIARLKAANSPFWSRYLS 1032

Query: 5601 DDTGASLDDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRS 5422
            +  G +++DC    E L ++++++++    ++  G   + +     HFS ++    M R+
Sbjct: 1033 EGNGGTIEDCQSACEALDVTVDLNVDGRCLVLGRGALRITMALKENHFSVIQAAQLMERT 1092

Query: 5421 SFSHLQGKSNVSATKGLVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGE 5251
              SHL  K N++  +GL E + +    +  N + F A+ EY R L  SFL  TTG+ LG 
Sbjct: 1093 FVSHLSMKGNINVLEGLHEMLDSNVGATGVNKIQFTANFEYARTLANSFLNMTTGICLGR 1152

Query: 5250 VLDNGAKYFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRN 5071
             LDNG KYF     L++    I  ++  + GFAGSGKS+ +Q WL   KK  FCVVSPR 
Sbjct: 1153 ALDNGEKYFRHI--LTDQVRQIGFEVTMVCGFAGSGKSRQLQSWLHSRKKGNFCVVSPRT 1210

Query: 5070 VLASDWVFKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQAS 4891
             LA+DW FKL L   +  KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   
Sbjct: 1211 NLAADWSFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELTNV 1270

Query: 4890 NSKAEVVLLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNS 4711
            N   ++VLLFDPLQARYH++ D  IL+F+HDVDR++  + +NY+Y + R++  F R F  
Sbjct: 1271 NRYCQIVLLFDPLQARYHNKMDESILTFEHDVDRLIGGQNINYIYSTHRMSKYFNRFF-- 1328

Query: 4710 DLPMLNRGET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFG 4540
            D+P  N+     + K+WI      I     +R +P DV+LV+S +EKK +      +TFG
Sbjct: 1329 DVPCFNQANRVEEQKLWIFDDVYSIPSICLDRQEPCDVLLVESDLEKKAFSPIMNVMTFG 1388

Query: 4539 ESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPK 4360
            ESQGLTF H CI+LSES+AASNE RW VA TR++ R S   + LGG+++F +  K +L  
Sbjct: 1389 ESQGLTFNHACILLSESSAASNEFRWMVAITRSRNRFSLCSTFLGGIEEFKVRRKESLIT 1448

Query: 4359 KILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMR 4180
             IL GE +  +    M++  LI  +    G +DE+DREERLEGDPFLKP+IFLGQR+E  
Sbjct: 1449 SILQGEKITFARLNLMLKCNLIRNEKK-NGCSDEVDREERLEGDPFLKPFIFLGQRIETH 1507

Query: 4179 EIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRG 4000
            E + +   + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K  
Sbjct: 1508 EEKKDEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVH 1567

Query: 3999 PKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYR 3820
                  T GP+RFK+IYPKHS  DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y 
Sbjct: 1568 INGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYA 1627

Query: 3819 HFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQL 3640
            +FK+   L+F +DQGLLE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQL
Sbjct: 1628 NFKKKMGLEFSFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQL 1687

Query: 3639 CTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNN 3460
            CTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE QIRSQLPEEIYIHSNKNFDDLNN
Sbjct: 1688 CTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRSQLPEEIYIHSNKNFDDLNN 1747

Query: 3459 WVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLG 3280
            WVKKFF RDICVESDYEAFDA QDEYILSFEIHLMKDA  P ++IDAYIDLKCKL CKLG
Sbjct: 1748 WVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAKFPQAIIDAYIDLKCKLGCKLG 1807

Query: 3279 HFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVF 3100
            HF++MRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F
Sbjct: 1808 HFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLF 1867

Query: 3099 NKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSY 2920
              ISLKAKVERTE PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSY
Sbjct: 1868 ELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSY 1927

Query: 2919 AYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            AY+LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1928 AYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1979


>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1976 bits (5118), Expect = 0.0
 Identities = 1038/2000 (51%), Positives = 1322/2000 (66%), Gaps = 36/2000 (1%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 8338
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 8337 ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 8173
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLDNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178

Query: 8172 RKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 7993
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 7992 QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 7813
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 7812 DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 7633
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 7632 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 7453
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 7452 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 7273
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE R DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADD 478

Query: 7272 GYLERVKLPFFN---YKGDPRKRETYHFLQQQLHRESPMRASGCKEKEPTLRICWISNDH 7102
            GYLER++LPF+N   Y    R+   Y+ L  +   E  +  S  K     L+I W    H
Sbjct: 479  GYLERIRLPFWNLNDYDLKRRRVNVYNILSYRFEEERRIE-SAQKGPNKMLQIEW----H 533

Query: 7101 RFVRFSRAVVNSNEVDDKKHFEAYTNLMAFLVKEGEMYTGAYIEQKFDEFLHPDHYCSNS 6922
                F      SN + +      +T L A L K  +    +Y +Q      +    C+  
Sbjct: 534  GIKEFKVDPFISNSITE------FTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEG 587

Query: 6921 DLEKVEPERDDESGAKRDKEAEFCNGEEDKIPHHNXXXXXXXXXXXXXXDQCSHGSEKDE 6742
             L+    E   E   K        + EE+                     +C    E   
Sbjct: 588  -LDGFNLEEHLERRLKAAGHDISDDEEEELTSAEQAGPIKILADPLGFMKECLE--EIPI 644

Query: 6741 HNQPLFDHXXXXXXXXXXXXXXEGSGRTTMHFN--QIQYKDMFKRTECTASHGGLIDVPA 6568
              +P  +                G   T  H    +I Y D+F    C  +HG  I  P+
Sbjct: 645  ETEPSLEER--------------GQFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPS 690

Query: 6567 DGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDPNSH--LWELIAKDGVFMEHELIYLF 6394
            DGNCFF A  +TFE VE    +RSDFS WL E +  S+  L E+I  DGVFME ELIYLF
Sbjct: 691  DGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLF 749

Query: 6393 AISRGLKIVVH----LNDDVFAFGDGCSEGHIFCDGHHFMAYETFALNCKVSFDLIDGIK 6226
             + RG+ +++H      ++V+A   G  EGH+   G+HF+  ET+ ++   S  L+  I 
Sbjct: 750  CVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIP 809

Query: 6225 GYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGADYGHNGMMYPLNQWIPSLDEIIQTC 6046
              +  ++ K++F    F C  FRGRKAAF +KV ADYGHNGM+YP N W+PSLDEIIQ C
Sbjct: 810  CGFSEEITKFRFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQIC 869

Query: 6045 DPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTVNLSGNCIFRVEVEKKQIEFEMS 5866
                 +N ALI +YE  ++LG HRDNE VY+D  ILTV   G   F +E + +   F M+
Sbjct: 870  GQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMT 929

Query: 5865 DASFFIMPKGFQKKARHGVMATSERISITFRTHVRMMNGDKIEKSISLPKKKNKCLISAV 5686
              SFF+MPKGFQKKARH V     R+SITFR HVR +NG  I  +I     KN  LI A 
Sbjct: 930  AGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPI--AIREENYKNTRLIDAF 987

Query: 5685 SQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEVHMENDIKIM 5506
            S+A+K +++ +   L + N P+W  ++ +  G S++DC    E L +++++++     ++
Sbjct: 988  SKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVL 1047

Query: 5505 KFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKISN---MSHYNL 5335
              G   + +   + HFS +     M R+  SHL  K +++  +G  E +S     +  N 
Sbjct: 1048 GKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAAGVNK 1107

Query: 5334 LPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECISTQLHCLTGF 5155
            + F A+ E+ RIL  SFL  TTG+ LG+ LDNG KYF     L +  + I   +  + GF
Sbjct: 1108 IQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHI--LKDRVKQIGIDVTVVCGF 1165

Query: 5154 AGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFESFIKRERK 4975
            AGSGKS+ +Q WL   KK  FCVVSPR  LA+DW FKL L   +  KV TFE FIK ++ 
Sbjct: 1166 AGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKS 1225

Query: 4974 NLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDHGILSFDHDV 4795
             L+LIV+DE+TLFPNGY+D LVY+L   N   +++LLFDPLQARYH++ D  IL+F+HDV
Sbjct: 1226 KLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDV 1285

Query: 4794 DRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPEDIRGGFGER 4621
            DR+V  + + Y+Y + R++  F R F  D+P  N+ +   + ++WI      I     +R
Sbjct: 1286 DRLVGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQADRTEEQRLWIFDDVYSIPSICSDR 1343

Query: 4620 LQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTR 4444
             +P DV+LV+S +EKK +      +TFGESQGLTF HVCI+LSES+AASNE RW VA TR
Sbjct: 1344 QEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTR 1403

Query: 4443 AKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGST 4264
            ++ R S   + LGG+++F +  K +L   IL GE +  +    M++  LI ++    G  
Sbjct: 1404 SRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKE-NGCR 1462

Query: 4263 DEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFD 4084
            DE+DREERLEGDPFLKP+IFLGQR+E  E E E   + EP CQTHLYI+EPNF   YNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522

Query: 4083 LIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAV 3904
             IR KE+REYREDMLVT+QFCDSY+K        T GP+RFK+IYPKHS  DDMTFWMAV
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAV 1582

Query: 3903 KKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKS 3724
            +KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   L+F +DQGLLE  +N FE KKL+KS
Sbjct: 1583 RKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKS 1642

Query: 3723 QATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWC 3544
              TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWC
Sbjct: 1643 CGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 1702

Query: 3543 RYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEI 3364
            RYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF RDICVESDYEAFDA QDEYILSFE+
Sbjct: 1703 RYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEV 1762

Query: 3363 HLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWR 3184
            HLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWR
Sbjct: 1763 HLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWR 1822

Query: 3183 RGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPE 3004
            RGQPIAFAGDDMCALN+L + +DF+++F  ISLKAKVERTE PMFCGWRLTPYGIVKEPE
Sbjct: 1823 RGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPE 1882

Query: 3003 LVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHI 2824
            L YNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHI
Sbjct: 1883 LAYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHI 1942

Query: 2823 DKLKTKVKDLFQEQSSDEDI 2764
            DKLKTKV+DLF EQSSDEDI
Sbjct: 1943 DKLKTKVRDLFLEQSSDEDI 1962


>gb|AUY61803.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1492 bits (3862), Expect = 0.0
 Identities = 758/1305 (58%), Positives = 937/1305 (71%), Gaps = 12/1305 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I Y D+F    C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E + 
Sbjct: 666  EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNG 724

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 6301
             S+  L E+I  DGVFME ELIYLF + RG+ +++H      ++V+A   G  EGH+   
Sbjct: 725  GSYASLAEMIRPDGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G+HF+  ET+ ++   S  L+D I   +  ++ K+ F    F C  FRGRKAAF +KV A
Sbjct: 785  GNHFVGIETYNISTLTSDPLLDDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSLDEIIQ C     +N ALI +YE  ++LG HRDNE VY+D  I
Sbjct: 845  DYGHNGMVYPHNSWVPSLDEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPI 904

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR
Sbjct: 905  LTVCTFGEGTFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVR 964

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             +NG  I  +I     KN CLI A S+A+K +++ +   L + N P+W  ++ +  G S+
Sbjct: 965  RLNGSPI--AIREENYKNTCLIDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSI 1022

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L +++++++     ++  G   + +   + HFS +     M R+  SHL  
Sbjct: 1023 EDCQSACEALDVTVDLNVNGKCVVLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLE 1082

Query: 5400 KSNVSATKGLVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAK 5230
            K NV+  +G+ E +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG K
Sbjct: 1083 KGNVNVLEGIDEMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEK 1142

Query: 5229 YFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWV 5050
            YF     L +  + I   +  + GFAGSGKS+ +Q WL   KK  FCVVSPR  LA+DW 
Sbjct: 1143 YFLHI--LKDRVKQIGVDVTMVCGFAGSGKSRKLQSWLHSKKKGNFCVVSPRTNLAADWA 1200

Query: 5049 FKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVV 4870
            FKL L   +  KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++
Sbjct: 1201 FKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQII 1260

Query: 4869 LLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNR 4690
            LLFDPLQARYH++ D  IL+F+HDVDR+V  + + Y+Y + R++  F R F  D+P  N+
Sbjct: 1261 LLFDPLQARYHNKMDESILTFEHDVDRLVGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQ 1318

Query: 4689 GET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTF 4519
             +   + ++WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF
Sbjct: 1319 ADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTF 1378

Query: 4518 GHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGET 4339
             HVCI+LSES+AASNE RW VA TR++ R S   + LGG+++F +  K +L   IL GE 
Sbjct: 1379 NHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTFLGGVEEFKVKRKESLITSILQGEK 1438

Query: 4338 LDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETF 4159
            +  +    M++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E  
Sbjct: 1439 ITFNRLNLMLKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRVEKDENEVEEV 1497

Query: 4158 TLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTT 3979
             + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T
Sbjct: 1498 KIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRET 1557

Query: 3978 VGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFD 3799
             GP+RFK+IYPKHS  DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   
Sbjct: 1558 PGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMG 1617

Query: 3798 LKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 3619
            L+F +DQGLLE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQ
Sbjct: 1618 LEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQ 1677

Query: 3618 FVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFM 3439
            FVDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF 
Sbjct: 1678 FVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNVWVKKFFQ 1737

Query: 3438 RDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRF 3259
            RDICVESDYEAFDA QDEYILSFE+HLMKDA  P  +IDAYIDLKCKL CKLGHF++MRF
Sbjct: 1738 RDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQQIIDAYIDLKCKLGCKLGHFSIMRF 1797

Query: 3258 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKA 3079
            TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKA
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 3078 KVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSER 2899
            KVERTE PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSER
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSER 1917

Query: 2898 LYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            LYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1918 LYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962



 Score =  524 bits (1350), Expect = e-148
 Identities = 272/591 (46%), Positives = 370/591 (62%), Gaps = 38/591 (6%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 8338
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 8337 ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 8173
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178

Query: 8172 RKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 7993
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 7992 QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 7813
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 7812 DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 7633
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 7632 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 7453
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 7452 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 7273
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDD 478

Query: 7272 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW----- 7117
            G+LER++LPF+N      KR+    Y  L  +   E  +  S  K     L+I W     
Sbjct: 479  GHLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIE-SVQKGPNKMLQIEWYGIKE 537

Query: 7116 ------ISNDHRFVRFSRAVVNSNEVDDKKHFEA-----YTNLMAFLVKEG 6997
                  ISN         A++    +D KK+  +      +N + FL  EG
Sbjct: 538  FQVDPFISNSITEFTLLEALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG 587


>gb|AUY61800.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1491 bits (3861), Expect = 0.0
 Identities = 758/1305 (58%), Positives = 937/1305 (71%), Gaps = 12/1305 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I Y D+F    C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E + 
Sbjct: 666  EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNG 724

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 6301
             S+  L E+I  DGVFME ELIYLF + RG+ +++H      ++V+A   G  EGH+   
Sbjct: 725  GSYASLAEMIRPDGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G+HF+  ET+ ++   S  L+D I   +  ++ K+ F    F C  FRGRKAAF +KV A
Sbjct: 785  GNHFVGIETYNISTLTSDPLLDDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSLDEIIQ C     +N ALI +YE  ++LG HRDNE VY+D  I
Sbjct: 845  DYGHNGMVYPHNSWVPSLDEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPI 904

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR
Sbjct: 905  LTVCTFGEGTFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVR 964

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             +NG  I  +I     KN CLI A S+A+K +++ +   L + N P+W  ++ +  G S+
Sbjct: 965  RLNGSPI--AIREENYKNTCLIDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSI 1022

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L +++++++     ++  G   + +   + HFS +     M R+  SHL  
Sbjct: 1023 EDCQSACEALDVTVDLNVNGKCVVLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLE 1082

Query: 5400 KSNVSATKGLVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAK 5230
            K NV+  +G+ E +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG K
Sbjct: 1083 KGNVNVLEGIDEMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEK 1142

Query: 5229 YFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWV 5050
            YF     L +  + I   +  + GFAGSGKS+ +Q WL   KK  FCVVSPR  LA+DW 
Sbjct: 1143 YFLHI--LKDRVKQIGIDVTMVCGFAGSGKSRKLQSWLHSKKKGNFCVVSPRTNLAADWA 1200

Query: 5049 FKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVV 4870
            FKL L   +  KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++
Sbjct: 1201 FKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQII 1260

Query: 4869 LLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNR 4690
            LLFDPLQARYH++ D  IL+F+HDVDR+V  + + Y+Y + R++  F R F  D+P  N+
Sbjct: 1261 LLFDPLQARYHNKMDESILTFEHDVDRLVGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQ 1318

Query: 4689 GET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTF 4519
             +   + ++WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF
Sbjct: 1319 ADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTF 1378

Query: 4518 GHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGET 4339
             HVCI+LSES+AASNE RW VA TR++ R S   + LGG+++F +  K +L   IL GE 
Sbjct: 1379 NHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTFLGGVEEFKVKRKESLITSILQGEK 1438

Query: 4338 LDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETF 4159
            +  +    M++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E  
Sbjct: 1439 ITFNRLNLMLKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRVEKDENEVEEV 1497

Query: 4158 TLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTT 3979
             + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T
Sbjct: 1498 KIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRET 1557

Query: 3978 VGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFD 3799
             GP+RFK+IYPKHS  DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   
Sbjct: 1558 PGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMG 1617

Query: 3798 LKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 3619
            L+F +DQGLLE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQ
Sbjct: 1618 LEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQ 1677

Query: 3618 FVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFM 3439
            FVDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF 
Sbjct: 1678 FVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNVWVKKFFQ 1737

Query: 3438 RDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRF 3259
            RDICVESDYEAFDA QDEYILSFE+HLMKDA  P  +IDAYIDLKCKL CKLGHF++MRF
Sbjct: 1738 RDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQQIIDAYIDLKCKLGCKLGHFSIMRF 1797

Query: 3258 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKA 3079
            TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKA
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 3078 KVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSER 2899
            KVERTE PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSER
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSER 1917

Query: 2898 LYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            LYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1918 LYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962



 Score =  524 bits (1350), Expect = e-148
 Identities = 272/591 (46%), Positives = 370/591 (62%), Gaps = 38/591 (6%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 8338
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 8337 ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 8173
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178

Query: 8172 RKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 7993
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 7992 QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 7813
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 7812 DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 7633
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 7632 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 7453
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 7452 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 7273
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDD 478

Query: 7272 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW----- 7117
            G+LER++LPF+N      KR+    Y  L  +   E  +  S  K     L+I W     
Sbjct: 479  GHLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIE-SVQKGPNKMLQIEWYGIKE 537

Query: 7116 ------ISNDHRFVRFSRAVVNSNEVDDKKHFEA-----YTNLMAFLVKEG 6997
                  ISN         A++    +D KK+  +      +N + FL  EG
Sbjct: 538  FQVDPFISNSITEFTLLEALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG 587


>gb|AUY61797.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1490 bits (3857), Expect = 0.0
 Identities = 758/1305 (58%), Positives = 936/1305 (71%), Gaps = 12/1305 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I Y D+F    C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E + 
Sbjct: 666  EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNG 724

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 6301
             S+  L E+I  DGVFME ELIYLF + RG+ +++H      ++V+A   G  EGH+   
Sbjct: 725  GSYASLAEMIRPDGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G+HF+  ET+ ++   S  L+D I   +  ++ K+ F    F C  FRGRKAAF +KV A
Sbjct: 785  GNHFVGIETYNISTLTSDPLLDDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSLDEIIQ C     +N ALI +YE  ++LG HRD+E VY+D  I
Sbjct: 845  DYGHNGMVYPHNSWVPSLDEIIQICGQGDDFNCALINFYEANSSLGFHRDSERVYNDDPI 904

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR
Sbjct: 905  LTVCTFGEGTFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVR 964

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             +NG  I  +I     KN CLI A S+A+K +++ +   L + N P+W  ++ +  G S+
Sbjct: 965  RLNGSPI--AIREENYKNTCLIDAFSKAMKRSKQAIIARLKTVNSPFWSRYLSEGNGGSI 1022

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L +++++++     ++  G   + +   + HFS +     M R+  SHL  
Sbjct: 1023 EDCQSACEALDVTVDLNVNGKCVVLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLE 1082

Query: 5400 KSNVSATKGLVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAK 5230
            K NV+  +GL E +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG K
Sbjct: 1083 KGNVNVLEGLDEMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEK 1142

Query: 5229 YFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWV 5050
            YF     L +  + I   +  + GFAGSGKS+ +Q WL   KK  FCVVSPR  LA+DW 
Sbjct: 1143 YFLHI--LKDRVKQIGIDVTMVCGFAGSGKSRKLQSWLHSKKKGNFCVVSPRTNLAADWA 1200

Query: 5049 FKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVV 4870
            FKL L   +  KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++
Sbjct: 1201 FKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQII 1260

Query: 4869 LLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNR 4690
            LLFDPLQARYH++ D  IL+F+HDVDR+V  + + Y+Y + R++  F R F  D+P  N+
Sbjct: 1261 LLFDPLQARYHNKMDESILTFEHDVDRLVGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQ 1318

Query: 4689 GET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTF 4519
             +   + K+WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF
Sbjct: 1319 ADRTEEQKLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTF 1378

Query: 4518 GHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGET 4339
             HVCI+LSES+AASNE RW VA TR++ R S   + LGG+++F +  K +L   IL GE 
Sbjct: 1379 NHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTFLGGVEEFKVKRKESLITSILQGEK 1438

Query: 4338 LDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETF 4159
            +       M++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E  
Sbjct: 1439 ITFDRLNLMLKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEV 1497

Query: 4158 TLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTT 3979
             + EP CQTHLYI+EPNF   YNFD I+ KE+REYREDMLVT+QFCDSY+K        T
Sbjct: 1498 KIREPTCQTHLYITEPNFGLCYNFDFIKEKEQREYREDMLVTNQFCDSYDKVHINGKRET 1557

Query: 3978 VGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFD 3799
             GP+RFK+IYPKHS  DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   
Sbjct: 1558 PGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMG 1617

Query: 3798 LKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 3619
            L+F +DQGLLE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQ
Sbjct: 1618 LEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQ 1677

Query: 3618 FVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFM 3439
            FVDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF 
Sbjct: 1678 FVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNVWVKKFFQ 1737

Query: 3438 RDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRF 3259
            RDICVESDYEAFDA QDEYILSFE+HLMKDA  P  +IDAYIDLKCKL CKLGHF++MRF
Sbjct: 1738 RDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQEIIDAYIDLKCKLGCKLGHFSIMRF 1797

Query: 3258 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKA 3079
            TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKA
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 3078 KVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSER 2899
            KVERTE PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSER
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSER 1917

Query: 2898 LYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            LYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1918 LYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962



 Score =  527 bits (1358), Expect = e-149
 Identities = 273/591 (46%), Positives = 370/591 (62%), Gaps = 38/591 (6%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 8338
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 8337 ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 8173
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178

Query: 8172 RKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 7993
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 7992 QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 7813
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 7812 DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 7633
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 7632 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 7453
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 7452 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 7273
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDD 478

Query: 7272 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW----- 7117
            GYLER++LPF+N      KR+    Y  L  +   E  +  S  K     L+I W     
Sbjct: 479  GYLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKE 537

Query: 7116 ------ISNDHRFVRFSRAVVNSNEVDDKKHFEA-----YTNLMAFLVKEG 6997
                  ISN         A++    +D KK+  +      +N + FL  EG
Sbjct: 538  FQVDPFISNSITEFTLLEALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG 587


>gb|AUY61794.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1490 bits (3857), Expect = 0.0
 Identities = 756/1305 (57%), Positives = 937/1305 (71%), Gaps = 12/1305 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I Y D+F    C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E + 
Sbjct: 666  EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFAETFE-VERPDTLRSDFSDWLMEFNG 724

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 6301
             S+  L E+I  DGVFME ELIYLF + RG+ +++H      ++V+A   G  EGH+   
Sbjct: 725  GSYASLAEMIRPDGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G+HF+  ET+ ++   S  L+D I   +  ++ K+ F    F C  FRGRKAAF +KV A
Sbjct: 785  GNHFVGIETYNISTLTSDPLLDDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSLDEIIQ C     +N ALI +YE  ++LG HRD+E VY+D  I
Sbjct: 845  DYGHNGMVYPHNSWVPSLDEIIQICGQGDDFNCALINFYEANSSLGFHRDSERVYNDDPI 904

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR
Sbjct: 905  LTVCTFGEGTFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVR 964

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             +NG  I  +I     KN CLI A S+A+K +++ +   L + N P+W  ++ +  G S+
Sbjct: 965  RLNGSPI--AIREENYKNTCLIDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSI 1022

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L +++++++     ++  G   + +   + HFS +     M R+  SHL  
Sbjct: 1023 EDCQSACEALDVTVDLNVNGKCVVLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLE 1082

Query: 5400 KSNVSATKGLVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAK 5230
            K NV+  +GL E +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG K
Sbjct: 1083 KGNVNVLEGLDEMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEK 1142

Query: 5229 YFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWV 5050
            YF     L +  + I   +  + GFAGSGKS+ +Q WL   KK  FCV+SPR  LA+DW 
Sbjct: 1143 YFLHI--LKDRAKQIGIDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVISPRTNLAADWA 1200

Query: 5049 FKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVV 4870
            FKL L   +  KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++
Sbjct: 1201 FKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQII 1260

Query: 4869 LLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNR 4690
            LLFDPLQARYH++ D  IL+F+HDVDR++  + + Y+Y + R++  F R F  D+P  N+
Sbjct: 1261 LLFDPLQARYHNKMDESILTFEHDVDRLIGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQ 1318

Query: 4689 GET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTF 4519
             +   + ++WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF
Sbjct: 1319 ADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTF 1378

Query: 4518 GHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGET 4339
             HVCI+LSES+AASNE RW VA TR++ R S   + LGG+++F +  K +L   IL GE 
Sbjct: 1379 NHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTFLGGVEEFKVKRKESLITSILQGEK 1438

Query: 4338 LDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETF 4159
            +  +    M++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E  
Sbjct: 1439 ITFNRLNLMLKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEV 1497

Query: 4158 TLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTT 3979
             + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T
Sbjct: 1498 KIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRET 1557

Query: 3978 VGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFD 3799
             GP+RFK+IYPKHS  DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   
Sbjct: 1558 PGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMG 1617

Query: 3798 LKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 3619
            L+F +DQGLLE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQ
Sbjct: 1618 LEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQ 1677

Query: 3618 FVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFM 3439
            FVDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF 
Sbjct: 1678 FVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQ 1737

Query: 3438 RDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRF 3259
            RDICVESDYEAFDA QDEYILSFE+HLMKDA  P  +IDAYIDLKCKL CKLGHF++MRF
Sbjct: 1738 RDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRF 1797

Query: 3258 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKA 3079
            TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKA
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 3078 KVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSER 2899
            KVERTE PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSER
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSER 1917

Query: 2898 LYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            LYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1918 LYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962



 Score =  526 bits (1355), Expect = e-149
 Identities = 261/535 (48%), Positives = 350/535 (65%), Gaps = 22/535 (4%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 8338
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 8337 ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 8173
               LN   +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNAFNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSKNFIKSLEN 178

Query: 8172 RKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 7993
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 7992 QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 7813
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 7812 DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 7633
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 7632 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 7453
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 7452 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 7273
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVVTDENAYLDPLSIFAINENFNEDRVDD 478

Query: 7272 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW 7117
            GYLER++LPF+N      KR+    Y  L  +   E  +  S  K     L+I W
Sbjct: 479  GYLERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIE-SAQKGPNKMLQIEW 532


>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
          Length = 1962

 Score = 1489 bits (3854), Expect = 0.0
 Identities = 756/1305 (57%), Positives = 937/1305 (71%), Gaps = 12/1305 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I Y D+F    C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E + 
Sbjct: 666  EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNG 724

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 6301
             S+  L E+I  +GVFME ELIYLF + RG+ +++H      ++V+A   G  EGH+   
Sbjct: 725  GSYASLAEMIRPNGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G+HF+  ET+ ++   S  L+  I   +  ++ K+ F    F C  FRGRKAAF +KV A
Sbjct: 785  GNHFVGIETYNISTLTSDPLLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSL+EIIQ C     +N ALI +YE  ++LG HRDNE VY+D  I
Sbjct: 845  DYGHNGMVYPHNSWVPSLEEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPI 904

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR
Sbjct: 905  LTVCTFGEGTFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNEMPRVSITFRKHVR 964

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             +NG  I  +I     KN CLI+A S+A+K +++ +   L + N P+W  ++ +  G S+
Sbjct: 965  RLNGSPI--AIREENYKNTCLINAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSI 1022

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L +++++++     ++  G   + +   + HFS +     M R+  SHL  
Sbjct: 1023 EDCQSACEALDVTVDLNVNGKYVVLGKGALRISMALKNNHFSVINAAQLMERTFVSHLLE 1082

Query: 5400 KSNVSATKGLVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAK 5230
            K NV+  +G  E +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG K
Sbjct: 1083 KGNVNVLEGFDEMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEK 1142

Query: 5229 YFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWV 5050
            YF     L +  + I T +  + GFAGSGKS+ +Q WL   KK  FCVVSPR  LA+DW 
Sbjct: 1143 YFLHI--LKDRVKQIGTDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWA 1200

Query: 5049 FKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVV 4870
            FKL L   +  KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++
Sbjct: 1201 FKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQII 1260

Query: 4869 LLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNR 4690
            LLFDPLQARYH++ D  IL+F+HDVDR++  + + Y+Y + R++  F R F  D+P  N+
Sbjct: 1261 LLFDPLQARYHNKMDESILTFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFF--DVPCFNQ 1318

Query: 4689 GET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTF 4519
             +   + ++WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF
Sbjct: 1319 ADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTF 1378

Query: 4518 GHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGET 4339
             HVCI+LSES+AASNE RW VA TRA+ R S   + LGG+++F +  K +L   IL GE 
Sbjct: 1379 NHVCILLSESSAASNEFRWMVALTRARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEK 1438

Query: 4338 LDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETF 4159
            +  +    M++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E  
Sbjct: 1439 ITFNRLNLMLKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEV 1497

Query: 4158 TLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTT 3979
             + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T
Sbjct: 1498 KIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRET 1557

Query: 3978 VGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFD 3799
             GP+RFK+IYPKHS  DDMTFWMAV+KRL+FR E+EN +RL+ AHL+GGL+Y +FK+   
Sbjct: 1558 PGPLRFKAIYPKHSADDDMTFWMAVRKRLIFREEEENYQRLSRAHLVGGLLYTNFKKKMG 1617

Query: 3798 LKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 3619
            L+F +DQGLLE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQ
Sbjct: 1618 LEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQ 1677

Query: 3618 FVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFM 3439
            FVDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF 
Sbjct: 1678 FVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQ 1737

Query: 3438 RDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRF 3259
            RDICVESDYEAFDA QDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRF
Sbjct: 1738 RDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRF 1797

Query: 3258 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKA 3079
            TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKA
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 3078 KVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSER 2899
            KVERTE PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSER
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSER 1917

Query: 2898 LYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            LYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1918 LYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962



 Score =  528 bits (1359), Expect = e-149
 Identities = 273/591 (46%), Positives = 371/591 (62%), Gaps = 38/591 (6%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 8338
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 8337 ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 8173
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178

Query: 8172 RKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 7993
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 7992 QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 7813
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 7812 DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 7633
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 7632 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 7453
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 7452 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 7273
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDD 478

Query: 7272 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW----- 7117
            GYLER++LPF+N      KR+    Y+ L  +   E  +  S  K     L+I W     
Sbjct: 479  GYLERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKE 537

Query: 7116 ------ISNDHRFVRFSRAVVNSNEVDDKKHFEA-----YTNLMAFLVKEG 6997
                  ISN         A++    +D KK+  +      +N + FL  EG
Sbjct: 538  FKVDPFISNSITEFTLLEALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG 587


>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
 sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA replication polyprotein; AltName: Full=ORF1
            protein; Includes: RecName: Full=Viral methyltransferase;
            Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate
            dioxygenase; Includes: RecName: Full=Protease; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase
 emb|CAC39422.1| hypothetical protein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1483 bits (3840), Expect = 0.0
 Identities = 755/1305 (57%), Positives = 935/1305 (71%), Gaps = 12/1305 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I Y D+F    C  +HG  I  P+DGNCFF A  +TFE VE    +RSDFS WL E + 
Sbjct: 666  EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNG 724

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 6301
             S+  L E+I  +GVFME ELIYLF + RG+ +++H      ++V+A   G  EGH+   
Sbjct: 725  GSYASLAEMIRPNGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G+HF+  ET+ ++   S  L+  I   +  ++ K+ F    F C  FRGRKAAF +KV A
Sbjct: 785  GNHFVGIETYNISTLTSDPLLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSL+EIIQ C     +N ALI +YE  ++LG HRDNE VY+D  I
Sbjct: 845  DYGHNGMVYPHNSWVPSLEEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPI 904

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E + +   F M+  SFF+MPKGFQKKARH V     R+SITFR HVR
Sbjct: 905  LTVCTFGEGRFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVR 964

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             +NG  I  +I     KN CLI+A S+A+K +++ +   L + N P+W  ++ +  G S+
Sbjct: 965  RLNGSPI--AIREENYKNTCLINAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSI 1022

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L +++++++     ++  G   + +   + HFS +     M R+  SHL  
Sbjct: 1023 EDCQSACEALDVTVDLNVNGKCVVLGKGALRISMALRNNHFSVINAAQLMERTFVSHLLE 1082

Query: 5400 KSNVSATKGLVEKISN---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAK 5230
            K NV+  +G    +S     +  N + F A+ E+ RIL  SFL  TTG+ LG+ LDNG K
Sbjct: 1083 KGNVNVLEGFDAMLSGDVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEK 1142

Query: 5229 YFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWV 5050
            YF     L +  + I   +  + GFAGSGKS+ +Q WL   KK  FCVVSPR  LA+DW 
Sbjct: 1143 YFLHI--LKDRVKQIGIDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWA 1200

Query: 5049 FKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVV 4870
            FKL L   +  KV TFE FIK ++  L+LIV+DE+TLFPNGY+D LVY+L   N   +++
Sbjct: 1201 FKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQII 1260

Query: 4869 LLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNR 4690
            LLFDPLQARYH++ D  IL+F+HDVDR++  + + Y+Y + R++  F R F  D+P  N+
Sbjct: 1261 LLFDPLQARYHNKMDESILTFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFF--DVPCFNQ 1318

Query: 4689 GET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTF 4519
             +   + ++WI      I     +R +P DV+LV+S +EKK +      +TFGESQGLTF
Sbjct: 1319 ADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTF 1378

Query: 4518 GHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGET 4339
             HVCI+LSES+AASNE RW VA TRA+ R S   + LGG+++F +  K +L   IL GE 
Sbjct: 1379 NHVCILLSESSAASNEFRWMVALTRARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEK 1438

Query: 4338 LDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETF 4159
            +  +    M++  LI ++    G  DE+DREERLEGDPFLKP+IFLGQR+E  E E E  
Sbjct: 1439 ITFNRLNLMLKCNLIRREKE-NGCRDEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEV 1497

Query: 4158 TLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTT 3979
             + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T
Sbjct: 1498 KIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRET 1557

Query: 3978 VGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFD 3799
             GP+RFK+IYPKHS  DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+   
Sbjct: 1558 PGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMG 1617

Query: 3798 LKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 3619
            L+F +DQGLLE  +N FE KKL+KS  TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQ
Sbjct: 1618 LEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQ 1677

Query: 3618 FVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFM 3439
            FVDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF 
Sbjct: 1678 FVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQ 1737

Query: 3438 RDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRF 3259
            RDICVESDYEAFDA QDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRF
Sbjct: 1738 RDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRF 1797

Query: 3258 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKA 3079
            TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F  ISLKA
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 3078 KVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSER 2899
            KVERTE PMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSER
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSER 1917

Query: 2898 LYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            LYEVLKSERQ+QYHQAVVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1918 LYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962



 Score =  528 bits (1359), Expect = e-149
 Identities = 273/591 (46%), Positives = 371/591 (62%), Gaps = 38/591 (6%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN HFA++++ + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKK-------------- 8338
            +EL+PNGYLPHSHP SK  ENH+L+ VLP V+N    + CSIKE K              
Sbjct: 61   IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120

Query: 8337 ---LNCIVARQN--LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGK 8173
               LN + +  N   S +N +V  +DVSRY E      F  +       FS    K+L  
Sbjct: 121  VSDLNALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLEN 178

Query: 8172 RKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRD 7993
            +++ FFHDEVHHW+           + +R +F+VVYPPE+L  + NSQNPK+Y FK+ + 
Sbjct: 179  KEAVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKG 238

Query: 7992 QLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISE 7813
            +LFFFPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S +AHHLFEI  G+L+++
Sbjct: 239  RLFFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTD 298

Query: 7812 DVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQII 7633
               F++D++ +DM  IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQII
Sbjct: 299  SKLFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 358

Query: 7632 GDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSN 7453
            GDDVE+KEFLFFEQ CKR IER TS+G+FGHS FE L    +   P++  R    WK  N
Sbjct: 359  GDDVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKN 418

Query: 7452 IFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDD 7273
             F+FL+ LGTL ++V+R  C+ H+LE++ FEVV  D + +LDPL  F  NEN+NE+R+DD
Sbjct: 419  TFEFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDD 478

Query: 7272 GYLERVKLPFFNYKGDPRKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW----- 7117
            GYLER++LPF+N      KR+    Y+ L  +   E  +  S  K     L+I W     
Sbjct: 479  GYLERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKE 537

Query: 7116 ------ISNDHRFVRFSRAVVNSNEVDDKKHFEA-----YTNLMAFLVKEG 6997
                  ISN         A++    +D KK+  +      +N + FL  EG
Sbjct: 538  FKVDPFISNSITEFTLLEALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG 587


>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1466 bits (3795), Expect = 0.0
 Identities = 753/1304 (57%), Positives = 928/1304 (71%), Gaps = 11/1304 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I + D+F+   C  +HG  I  P DGNCFF A   TF+C ++  ++RS+F+ WL   D 
Sbjct: 692  EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 6301
             S+  +   I  +GVFME ELIYLF I R + +++H   ND   VFA   G  EGH+   
Sbjct: 751  GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G HF+  ET+ ++   S   +  +   Y  +L  + F    F C  FRGRK AF +KV A
Sbjct: 811  GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSLDEII+ CD    +N ALI +Y   ++LG HRDNE VY+D  I
Sbjct: 871  DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E +++   F M+  SFF+MP+GFQ+KARH V     R+SITFR H+R
Sbjct: 931  LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIR 990

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             ++G  I  +I     +N CLI A+S+AL    + +   L + N P+W  F+ D  G S+
Sbjct: 991  RLDGSPI--AIRQDNYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSV 1048

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L I++++ ++    ++  G   V +     HFS ++E  ++ R+  SHL  
Sbjct: 1049 EDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAK 1108

Query: 5400 KSNVSATKGLVEKI-SNMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKY 5227
            KSN+    GL E + S MS   N + F A  E+ R+L  SFL  TTG+ L   LDNG KY
Sbjct: 1109 KSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKY 1168

Query: 5226 FNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVF 5047
            F    E     + I   +  + GFAGSGKS+ +Q WL   K+  FCVVSPRN LA+DW F
Sbjct: 1169 FLHMSE--ERPKQIGFDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSF 1226

Query: 5046 KLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVL 4867
            KL L   +  KV TFESFIK ++  L++IVLDE+TLFPNGY+D L+Y+L   NS   ++L
Sbjct: 1227 KLELEPNEKRKVATFESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLIL 1286

Query: 4866 LFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRG 4687
            LFDPLQARYH++ D  +L+F+HDVDR++  +++ Y+Y S R++  F R F  D+P  N+ 
Sbjct: 1287 LFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQA 1344

Query: 4686 ET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFG 4516
            ET  + ++WI+     I     ++ +P DV+LV+S +EKK +      +TFGESQGLTF 
Sbjct: 1345 ETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFN 1404

Query: 4515 HVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETL 4336
            HVCI+LSES+AASNE RW VA TRAK R+SF  + LGG+D+F I    +L   IL G+ +
Sbjct: 1405 HVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQI 1464

Query: 4335 DHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFT 4156
                   M++  LI K     G +DE+DREERLEGDPFLKP+IFLG R++    E     
Sbjct: 1465 TFERSNMMVKCNLI-KQEKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIE 1523

Query: 4155 LEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTV 3976
            + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T 
Sbjct: 1524 VREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETP 1583

Query: 3975 GPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDL 3796
            GP+RFK+IYPKHS  DDMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK    L
Sbjct: 1584 GPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGL 1643

Query: 3795 KFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 3616
            +F +DQGL E  VN FE KKL+KS  TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQF
Sbjct: 1644 EFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQF 1703

Query: 3615 VDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMR 3436
            VDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVK FF +
Sbjct: 1704 VDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQK 1763

Query: 3435 DICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFT 3256
            DICVESDYEAFDACQDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFT
Sbjct: 1764 DICVESDYEAFDACQDEYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFT 1823

Query: 3255 GEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAK 3076
            GEFCTFLFNTLAN+AFT+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F  ISLKAK
Sbjct: 1824 GEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAK 1883

Query: 3075 VERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERL 2896
            VERTE PMFCGWRLTPYGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERL
Sbjct: 1884 VERTESPMFCGWRLTPYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 1943

Query: 2895 YEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            YEVLKSERQIQYHQAVVRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1944 YEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987



 Score =  525 bits (1353), Expect = e-148
 Identities = 256/535 (47%), Positives = 349/535 (65%), Gaps = 22/535 (4%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN HFA+A+  + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------- 8323
            +EL+PNGY+PHSHP SK  ENH+L+ VLP V++  + + CSIKE K+             
Sbjct: 61   IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120

Query: 8322 -----------ARQNLSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLG 8176
                       A  + S +N +V  +D+ RY E      FS     D   FS+   + + 
Sbjct: 121  GALGFCGKDTSASDHTSFINRLVASKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCIS 179

Query: 8175 KRKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR 7996
             +++ FFHDEVHHW+           + RR +F++VYPPELL  + NSQNPK+Y FK+ +
Sbjct: 180  NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239

Query: 7995 DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLIS 7816
             +LFFFPDGV +E Y+Q  N+ WLF   +   GD+TWT+ RH S ++HHLFE+  G+LIS
Sbjct: 240  GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299

Query: 7815 EDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQI 7636
            +   F++D+  +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300  DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359

Query: 7635 IGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCS 7456
            IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S F+ L    +   P+   R    WK  
Sbjct: 360  IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419

Query: 7455 NIFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERID 7276
            N F+FL+ LGTL +E++R  C+ HILE++ FEVV  D + +LDPL  F  NEN+NEER+D
Sbjct: 420  NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479

Query: 7275 DGYLERVKLPFFNYKGDPRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 7117
            DGYL+RVKLPF+N K    KR   +      ++    R +  +E+ P   L+I W
Sbjct: 480  DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534


>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1464 bits (3791), Expect = 0.0
 Identities = 752/1304 (57%), Positives = 927/1304 (71%), Gaps = 11/1304 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I + D+F+   C  +HG  I  P DGNCFF A   TF+C ++  ++RS+F+ WL   D 
Sbjct: 692  EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 6301
             S+  +   I  +GVFME ELIYLF I R + +++H   ND   VFA   G  EGH+   
Sbjct: 751  GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G HF+  ET+ ++   S   +  +   Y  +L  + F    F C  FRGRK AF +KV A
Sbjct: 811  GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSLDEII+ CD    +N ALI +Y   ++LG HRDNE VY+D  I
Sbjct: 871  DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E +++   F M+  SFF+MP+GFQ+KARH V     R+SITFR H+R
Sbjct: 931  LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIR 990

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             ++G  I  +I     +N CLI A+S+AL    + +   L + N P+W  F+ D  G S+
Sbjct: 991  RLDGSPI--AIRQDNYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSV 1048

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L I++++ ++    ++  G   V +     HFS ++E  ++ R+  SHL  
Sbjct: 1049 EDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAK 1108

Query: 5400 KSNVSATKGLVEKI-SNMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKY 5227
            KSN+    GL E + S MS   N + F A  E+ R+L  SFL  TTG+ L   LDNG KY
Sbjct: 1109 KSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKY 1168

Query: 5226 FNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVF 5047
            F    E     + I   +  + GFAGSGKS+ +Q WL   K+  FCVVSPRN LA+DW F
Sbjct: 1169 FLHMSE--ERPKQIGFDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSF 1226

Query: 5046 KLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVL 4867
            KL L   +  KV TFESFIK ++  L++IVLDE+TLFPNGY+D L+Y+L   NS   ++L
Sbjct: 1227 KLELEPNEKRKVATFESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLIL 1286

Query: 4866 LFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRG 4687
            LFDPLQARYH++ D  +L+F+HDVDR++  +++ Y+Y S R++  F R F  D+P  N+ 
Sbjct: 1287 LFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQA 1344

Query: 4686 ET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFG 4516
            ET  + ++WI+     I     ++ +P DV+LV+S +EKK +      +TFGESQGLTF 
Sbjct: 1345 ETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFN 1404

Query: 4515 HVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETL 4336
            HVCI+LSES+AASNE RW VA TRAK R+SF  + LGG+D+F I    +L   IL G+ +
Sbjct: 1405 HVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQI 1464

Query: 4335 DHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFT 4156
                   M++  LI K     G +DE+DREERLEGDPFLKP+IFLG R++    E     
Sbjct: 1465 TFERSNMMVKCNLI-KQEKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIE 1523

Query: 4155 LEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTV 3976
            + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T 
Sbjct: 1524 VREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETP 1583

Query: 3975 GPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDL 3796
            GP+RFK+IYPKHS  DDMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK    L
Sbjct: 1584 GPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGL 1643

Query: 3795 KFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 3616
            +F +DQGL E  VN FE KKL+KS  TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQF
Sbjct: 1644 EFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQF 1703

Query: 3615 VDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMR 3436
            VDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVK FF +
Sbjct: 1704 VDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQK 1763

Query: 3435 DICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFT 3256
            DICVESDYEAFD CQDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFT
Sbjct: 1764 DICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFT 1823

Query: 3255 GEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAK 3076
            GEFCTFLFNTLAN+AFT+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F  ISLKAK
Sbjct: 1824 GEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAK 1883

Query: 3075 VERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERL 2896
            VERTE PMFCGWRLTPYGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERL
Sbjct: 1884 VERTESPMFCGWRLTPYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 1943

Query: 2895 YEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            YEVLKSERQIQYHQAVVRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1944 YEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987



 Score =  524 bits (1350), Expect = e-148
 Identities = 256/535 (47%), Positives = 349/535 (65%), Gaps = 22/535 (4%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN HFA+A+  + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------- 8323
            +EL+PNGY+PHSHP SK  ENH+L+ VLP V++  + + CSIKE K+             
Sbjct: 61   IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120

Query: 8322 -----------ARQNLSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLG 8176
                       A  + S +N +V  +D+ RY E      FS     D   FS+   + + 
Sbjct: 121  GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCIS 179

Query: 8175 KRKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR 7996
             +++ FFHDEVHHW+           + RR +F++VYPPELL  + NSQNPK+Y FK+ +
Sbjct: 180  NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239

Query: 7995 DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLIS 7816
             +LFFFPDGV +E Y+Q  N+ WLF   +   GD+TWT+ RH S ++HHLFE+  G+LIS
Sbjct: 240  GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299

Query: 7815 EDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQI 7636
            +   F++D+  +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300  DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359

Query: 7635 IGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCS 7456
            IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S F+ L    +   P+   R    WK  
Sbjct: 360  IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419

Query: 7455 NIFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERID 7276
            N F+FL+ LGTL +E++R  C+ HILE++ FEVV  D + +LDPL  F  NEN+NEER+D
Sbjct: 420  NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479

Query: 7275 DGYLERVKLPFFNYKGDPRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 7117
            DGYL+RVKLPF+N K    KR   +      ++    R +  +E+ P   L+I W
Sbjct: 480  DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534


>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1464 bits (3789), Expect = 0.0
 Identities = 752/1304 (57%), Positives = 927/1304 (71%), Gaps = 11/1304 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I + D+F+   C  +HG  I  P DGNCFF A   TF+C ++  ++RS+F+ WL   D 
Sbjct: 692  EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 6301
             S+  +   I  +GVFME ELIYLF I R + +++H   ND   VFA   G  EGH+   
Sbjct: 751  GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G HF+  ET+ ++   S   +  +   Y  +L  + F    F C  FRGRK AF +KV A
Sbjct: 811  GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSLDEII+ CD    +N ALI +Y   ++LG HRDNE VY+D  I
Sbjct: 871  DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E +++   F M+  SFF+MP+GFQ+KARH V     R+SITFR H+R
Sbjct: 931  LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIR 990

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             ++G  I  +I     +N CLI A+S+AL    + +   L + N P+W  F+ D  G S+
Sbjct: 991  RLDGSPI--AIRQDNYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSV 1048

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L I++++ ++    ++  G   V +     HFS ++E  ++ R+  SHL  
Sbjct: 1049 EDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAK 1108

Query: 5400 KSNVSATKGLVEKI-SNMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKY 5227
            KSN+    GL E + S MS   N + F A  E+ R+L  SFL  TTG+ L   LDNG KY
Sbjct: 1109 KSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKY 1168

Query: 5226 FNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVF 5047
            F    E     + I   +  + GFAGSGKS+ +Q WL   K+  FCVVSPRN LA+DW F
Sbjct: 1169 FLHMSE--ERPKQIGFDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSF 1226

Query: 5046 KLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVL 4867
            KL L   +  KV TFESFIK ++  L++IVLDE+TLFPNGY+D L+Y+L   NS   ++L
Sbjct: 1227 KLELEPNEKRKVATFESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLIL 1286

Query: 4866 LFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRG 4687
            LFDPLQARYH++ D  +L+F+HDVDR++  +++ Y+Y S R++  F R F  D+P  N+ 
Sbjct: 1287 LFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQA 1344

Query: 4686 ET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFG 4516
            ET  + ++WI+     I     ++ +P DV+LV+S +EKK +      +TFGESQGLTF 
Sbjct: 1345 ETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFN 1404

Query: 4515 HVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETL 4336
            HVCI+LSES+AASNE RW VA TRAK R+SF  + LGG+D+F I    +L   IL G+ +
Sbjct: 1405 HVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQI 1464

Query: 4335 DHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFT 4156
                   M++  LI K     G +DE+DREERLEGDPFLKP+IFLGQR++    E     
Sbjct: 1465 TFERLNMMVKCNLI-KQEKKNGCSDEVDREERLEGDPFLKPFIFLGQRIQKSHDEVGEIE 1523

Query: 4155 LEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTV 3976
            + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T 
Sbjct: 1524 VREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETP 1583

Query: 3975 GPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDL 3796
            GP+RFK+IYPKHS  DDMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK    L
Sbjct: 1584 GPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGL 1643

Query: 3795 KFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 3616
            +F +DQGL E  VN FE KKL+KS  TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQF
Sbjct: 1644 EFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQF 1703

Query: 3615 VDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMR 3436
            VDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDL  WVK FF +
Sbjct: 1704 VDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQK 1763

Query: 3435 DICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFT 3256
            DICVESDYEAFD CQDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFT
Sbjct: 1764 DICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFT 1823

Query: 3255 GEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAK 3076
            GEFCTFLFNTLAN+AFT+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F  ISLKAK
Sbjct: 1824 GEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAK 1883

Query: 3075 VERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERL 2896
            VERTE PMFCGWRLTPYGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERL
Sbjct: 1884 VERTESPMFCGWRLTPYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 1943

Query: 2895 YEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            YEVLKSERQIQYHQAVVRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1944 YEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987



 Score =  524 bits (1350), Expect = e-148
 Identities = 256/535 (47%), Positives = 349/535 (65%), Gaps = 22/535 (4%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN HFA+A+  + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------- 8323
            +EL+PNGY+PHSHP SK  ENH+L+ VLP V++  + + CSIKE K+             
Sbjct: 61   IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120

Query: 8322 -----------ARQNLSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLG 8176
                       A  + S +N +V  +D+ RY E      FS     D   FS+   + + 
Sbjct: 121  GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCIS 179

Query: 8175 KRKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR 7996
             +++ FFHDEVHHW+           + RR +F++VYPPELL  + NSQNPK+Y FK+ +
Sbjct: 180  NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239

Query: 7995 DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLIS 7816
             +LFFFPDGV +E Y+Q  N+ WLF   +   GD+TWT+ RH S ++HHLFE+  G+LIS
Sbjct: 240  GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299

Query: 7815 EDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQI 7636
            +   F++D+  +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300  DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359

Query: 7635 IGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCS 7456
            IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S F+ L    +   P+   R    WK  
Sbjct: 360  IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419

Query: 7455 NIFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERID 7276
            N F+FL+ LGTL +E++R  C+ HILE++ FEVV  D + +LDPL  F  NEN+NEER+D
Sbjct: 420  NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479

Query: 7275 DGYLERVKLPFFNYKGDPRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 7117
            DGYL+RVKLPF+N K    KR   +      ++    R +  +E+ P   L+I W
Sbjct: 480  DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534


>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1461 bits (3783), Expect = 0.0
 Identities = 751/1304 (57%), Positives = 926/1304 (71%), Gaps = 11/1304 (0%)
 Frame = -2

Query: 6642 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6463
            +I + D+F+   C  +HG  I  P DGNCFF A   TF+C ++  ++RS+F+ WL   D 
Sbjct: 692  EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750

Query: 6462 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 6301
             S+  +   I  +GVFME ELIYLF I R + +++H   ND   VFA   G  EGH+   
Sbjct: 751  GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810

Query: 6300 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6121
            G HF+  ET+ ++   S   +  +   Y  +L  + F    F C  FRGRK AF +KV A
Sbjct: 811  GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870

Query: 6120 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5941
            DYGHNGM+YP N W+PSLDEII+ CD    +N ALI +Y   ++LG HRDNE VY+D  I
Sbjct: 871  DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930

Query: 5940 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSERISITFRTHVR 5761
            LTV   G   F +E +++   F M+  SFF+MP+GFQ+KARH V     R+SITFR H+R
Sbjct: 931  LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIR 990

Query: 5760 MMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASL 5581
             ++G  I  +I     +N CLI A+S+AL    + +   L + N P+W  F+ D  G S+
Sbjct: 991  RLDGSPI--AIRQDNYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSV 1048

Query: 5580 DDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQG 5401
            +DC    E L I++++ ++    ++  G   V +     HFS ++E  ++ R+  SHL  
Sbjct: 1049 EDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAK 1108

Query: 5400 KSNVSATKGLVEKI-SNMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKY 5227
            KSN+    GL E + S MS   N + F A  E+ R+L  SFL  TTG+ L   LDNG KY
Sbjct: 1109 KSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKY 1168

Query: 5226 FNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVF 5047
            F    E     + I   +  + GFAGSGKS+ +Q WL   K+  FCVVSPRN LA+DW F
Sbjct: 1169 FLHMSE--ERPKQIGFDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSF 1226

Query: 5046 KLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVL 4867
            KL L   +  KV TFESFIK ++  L++IVLDE+TLFPNGY+D L+Y+L   NS   ++L
Sbjct: 1227 KLELEPNEKRKVATFESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLIL 1286

Query: 4866 LFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRG 4687
            LFDPLQARYH++ D  +L+F+HDVDR++  +++ Y+Y S R++  F R F  D+P  N+ 
Sbjct: 1287 LFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQA 1344

Query: 4686 ET--DSKIWIVTCPEDIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFG 4516
            ET  + ++WI+     I     ++ +P DV+LV+S +EKK +      +TFGESQGLTF 
Sbjct: 1345 ETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFN 1404

Query: 4515 HVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETL 4336
            HVCI+LSES+AASNE RW VA TRAK R+SF  + LGG+D+F I    +L   IL G+ +
Sbjct: 1405 HVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQI 1464

Query: 4335 DHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFT 4156
                   M++  LI K     G +DE+DREERLEGDPFLKP+IFLG R++    E     
Sbjct: 1465 TFERSNMMVKCNLI-KQEKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIE 1523

Query: 4155 LEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTV 3976
            + EP CQTHLYI+EPNF   YNFD IR KE+REYREDMLVT+QFCDSY+K        T 
Sbjct: 1524 VREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETP 1583

Query: 3975 GPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDL 3796
            GP+RFK+IYPKHS  DDMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK    L
Sbjct: 1584 GPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGL 1643

Query: 3795 KFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 3616
            +F +DQGL E  VN FE KKL+KS  TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQF
Sbjct: 1644 EFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQF 1703

Query: 3615 VDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMR 3436
            VDAKAGQTLACFQHLILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDL  WVK FF +
Sbjct: 1704 VDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQK 1763

Query: 3435 DICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFT 3256
            DICVESDYEAFD CQDEYILSFEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFT
Sbjct: 1764 DICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFT 1823

Query: 3255 GEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAK 3076
            GEFCTFLFNTLAN+AFT+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F  ISLKAK
Sbjct: 1824 GEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAK 1883

Query: 3075 VERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERL 2896
            VERTE PMFCGWRLTPYGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERL
Sbjct: 1884 VERTESPMFCGWRLTPYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 1943

Query: 2895 YEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2764
            YEVLKSERQIQYHQAVVRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1944 YEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987



 Score =  524 bits (1350), Expect = e-148
 Identities = 256/535 (47%), Positives = 349/535 (65%), Gaps = 22/535 (4%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MAL+SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN HFA+A+  + KK  S +G
Sbjct: 1    MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------- 8323
            +EL+PNGY+PHSHP SK  ENH+L+ VLP V++  + + CSIKE K+             
Sbjct: 61   IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120

Query: 8322 -----------ARQNLSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLG 8176
                       A  + S +N +V  +D+ RY E      FS     D   FS+   + + 
Sbjct: 121  GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCIS 179

Query: 8175 KRKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR 7996
             +++ FFHDEVHHW+           + RR +F++VYPPELL  + NSQNPK+Y FK+ +
Sbjct: 180  NKEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDK 239

Query: 7995 DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLIS 7816
             +LFFFPDGV +E Y+Q  N+ WLF   +   GD+TWT+ RH S ++HHLFE+  G+LIS
Sbjct: 240  GRLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELIS 299

Query: 7815 EDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQI 7636
            +   F++D+  +DM  IF +RF+ Y++FP+  +H+YKVYSYLLCLKKPD+ESGLAKLRQI
Sbjct: 300  DSKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQI 359

Query: 7635 IGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCS 7456
            IGDDVE+KEFLFFEQ CKR IER TS+G+FG+S F+ L    +   P+   R    WK  
Sbjct: 360  IGDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKK 419

Query: 7455 NIFDFLYDLGTLCIEVQRGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERID 7276
            N F+FL+ LGTL +E++R  C+ HILE++ FEVV  D + +LDPL  F  NEN+NEER+D
Sbjct: 420  NTFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVD 479

Query: 7275 DGYLERVKLPFFNYKGDPRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 7117
            DGYL+RVKLPF+N K    KR   +      ++    R +  +E+ P   L+I W
Sbjct: 480  DGYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534


>gb|AUZ97243.1| replicase [Actinidia seed-borne latent virus]
          Length = 2002

 Score = 1052 bits (2720), Expect = 0.0
 Identities = 582/1318 (44%), Positives = 807/1318 (61%), Gaps = 53/1318 (4%)
 Frame = -2

Query: 6576 VPADGNCFFHAIIKTFECVENHVEMRSD-------FSCWLRERDPNSHLWELIAKDGVFM 6418
            V  DGNCF+ A+       E+   +  +        S + R  D   H  ELI  DGV+ 
Sbjct: 698  VVGDGNCFYRALRLCLGHGEHEYNVTREKLHKSALSSTFFRLEDDILH--ELIT-DGVYT 754

Query: 6417 EHELIYLFAISRGLKIVVHLNDDVFAFG-----------DGCSEGHIFCDGHHF----MA 6283
              EL+        +++ +   + +  F            +     H+  +  HF     A
Sbjct: 755  SDELVKFIVNLANIELRISTQNQLNHFSSYKPLIAKYENEPVCVVHMHLENEHFDAVLYA 814

Query: 6282 YETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFF-SKVGADYGHN 6106
            ++    + +    +I+  +G +E  LEK  F   ++     +GRKA FF + +  DYGH+
Sbjct: 815  HDEDGYDQEEEGGVIELKRGNFED-LEKLNF--QNYKPTKLKGRKAFFFVNNLDIDYGHD 871

Query: 6105 GMMYPLNQWIPSLDEIIQTCDPD--GKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTV 5932
             + Y  N     L +I   C  D    YN+ L+Q +E G  + +HRD+EI Y D  IL++
Sbjct: 872  KVRYKSN-----LYDIESICPKDLYNGYNACLVQIFEEGGNIPMHRDDEICYDDESILSI 926

Query: 5931 NLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVM-ATSERISITFRTHVRMM 5755
            NL G+  F         +  M ++S+ +M   FQKK +H V   +S RI++TFR H+R M
Sbjct: 927  NLKGSATFSYSDGNVTKDIRMMESSYIVMDGPFQKKFKHSVKNCSSGRINVTFRRHIRRM 986

Query: 5754 NGDK-IEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLD 5578
            N +  ++ +  +   KN+C+I A++     +   V  AL+  ++ +W  + ++D G ++ 
Sbjct: 987  NMEPLVDINKEIKAMKNRCMIDAIADNEGRSIPVVMNALLKKDRIFWDEWRKNDNGGTIS 1046

Query: 5577 DCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFSELK-EFINMPRSSFSHLQG 5401
            D  + A  L  S EV   + +K +     L   +   GHF + K E I    +     + 
Sbjct: 1047 DLIKAANDLAFSFEVDTMDGVKTLNNKGPLFTFELKDGHFRKSKIEKIGKVMTELERREM 1106

Query: 5400 KSNVSATKG--LVEKISNMSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKY 5227
            K     + G  +VE +SN   +N L F    EY+  +  SF  R TG+ L ++  NG   
Sbjct: 1107 KRETEGSFGDKVVELVSNSPGFNKLTFEVDVEYVMKIVHSFKNRMTGIALSDIYSNGESI 1166

Query: 5226 FNQSFE---LSNLEECIST----------------QLHCLTGFAGSGKSKVMQDWLSKVK 5104
            F +  E     N   C                   +L+C+ G  GSGKS  +Q +L K  
Sbjct: 1167 FGEVIEEISRINKSSCSDKKKKDGSYESEHMTRKIELNCVIGLGGSGKSNSLQSFLKKNV 1226

Query: 5103 KTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGY 4924
            K  F V+SPR  LASDW+ K+G N     KV TFE+ ++   K++E+I++DE+TLFPNGY
Sbjct: 1227 KGKFLVISPRLNLASDWISKVGCNPN---KVRTFETALRTNLKSIEVIIVDELTLFPNGY 1283

Query: 4923 IDWLVYDLQASNSKAEVVLLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFR 4744
            +D L+  L     + ++V +FD  Q+RYHSESD  IL   HDVDR+V ++E++YL+ S+R
Sbjct: 1284 LDLLMCMLGKEVKRKKIVCIFDIYQSRYHSESDTNILGQVHDVDRIVKNKEISYLHQSYR 1343

Query: 4743 LNGSFFRRFNSDLPMLNRGETDSKIWIVTC---PEDIRGGFGERLQPDVILVDSQVEKKM 4573
               +FF  F  D+ +  + E   ++ +  C    + I    G ++  D ILV S+ EK  
Sbjct: 1344 FISNFFDSFFKDVTINKKVEEKFEVRVYDCHLKAQIIEEEKGRKI--DAILVASRDEKNA 1401

Query: 4572 YESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDD 4393
               +   +TFGESQGL+F  V IVLSE++   +E RW VA TRA+  + F+V + GGL  
Sbjct: 1402 LSGKVEVMTFGESQGLSFNRVAIVLSENSEKQDEYRWMVALTRARISICFIVIYRGGLSV 1461

Query: 4392 FLINCKANLPKKILNGETLDHSFYRKM-IRSKLIFKDLTIGGSTDEMDREERLEGDPFLK 4216
            FL NC   L    + G+       R M +  ++ FK   IGG +DE+DREERLEGDPFLK
Sbjct: 1462 FLQNCGNKLIGAFIKGQECSLRRLRMMSVAKEITFKKEMIGGKSDEVDREERLEGDPFLK 1521

Query: 4215 PYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLV 4036
            P+IFLG R+   E E     + EP+ ++H+ I++ NFA + NFDLIR KE REYR     
Sbjct: 1522 PFIFLGMRINSEEPEMCEVEIVEPKGKSHICIAQENFALSRNFDLIRSKELREYRFREST 1581

Query: 4035 TDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRL 3856
            T+QFCD+Y + G   +  T GP+RF+SIYP+H   DD+TFWMAV KRL F +E + R +L
Sbjct: 1582 TNQFCDNYERVGTGASKHTAGPLRFESIYPRHQSNDDLTFWMAVHKRLKFSNEAKERAKL 1641

Query: 3855 NDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWA 3676
             ++ ++G L+Y + K   +L F +D GLL +C+NDFEVKKL KS+ATI +HSIRSD+DW 
Sbjct: 1642 KESSMVGQLLYYNLKEKLNLSFSHDPGLLSQCINDFEVKKLSKSKATIANHSIRSDMDWP 1701

Query: 3675 LNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIY 3496
            +N +FLFMKSQLCTK+EKQ+ DAKAGQTLACFQH++LV+FAP+CRY+E  IRS+LP+EIY
Sbjct: 1702 MNQIFLFMKSQLCTKYEKQYCDAKAGQTLACFQHMVLVKFAPYCRYMEAMIRSRLPDEIY 1761

Query: 3495 IHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAY 3316
            IHSNKNF++LN+WV K F  + CVESDYEAFDA QDEYI+SFEI +M+D G+P+  I+ Y
Sbjct: 1762 IHSNKNFNELNDWVVKHFKGETCVESDYEAFDASQDEYIVSFEIAMMEDMGMPNWFINDY 1821

Query: 3315 IDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALN 3136
            IDLKC L CKLGHFA+MRFTGEFCTFLFNTLANMAFT CRY+WR+GQPIAFAGDDMC+L+
Sbjct: 1822 IDLKCTLGCKLGHFAIMRFTGEFCTFLFNTLANMAFTFCRYDWRKGQPIAFAGDDMCSLS 1881

Query: 3135 DLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVM 2956
            +L +   F+ +F K+SL+AKV RTE PMFCGWRL+ YGIVKEPELV+NRF +A E G V 
Sbjct: 1882 NLEVSNKFDSIFEKLSLQAKVIRTETPMFCGWRLSKYGIVKEPELVFNRFMIAKERGNVD 1941

Query: 2955 ECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQ 2782
            ECLENYAIEVSYAY+L ERL+EVLKSE QI+YHQ VVRFI+  ++K+KTKVKDLF +Q
Sbjct: 1942 ECLENYAIEVSYAYSLGERLFEVLKSEEQIEYHQCVVRFIIQRLEKIKTKVKDLFSDQ 1999



 Score =  323 bits (827), Expect = 1e-84
 Identities = 166/424 (39%), Positives = 248/424 (58%), Gaps = 8/424 (1%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MA ++ +T  E       K+D + + N  +E +    +    HFA+ +    K+ L+S+G
Sbjct: 1    MASIAVRTPYESFFAANSKDDQRLLLNSGLEFVKRELDAVGVHFAYQLSSQKKEALTSMG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIVARQ-----N 8311
            V L P  +L HSHPF KT+ENHML  VLP ++ N +++F SIK++K++ I  ++     N
Sbjct: 61   VSLHPVPFLSHSHPFCKTVENHMLLNVLPDLMGNGKWIFSSIKKRKIDTITKKRGVQASN 120

Query: 8310 LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWS 8131
            +  +N+++  +D +RY     VH+   N +   + F +   +     K  F HDE+HHWS
Sbjct: 121  VDFVNKVICAKDFTRYDFDPKVHDVRTNMSSREFIFPNSYIRACHNNK-IFIHDEIHHWS 179

Query: 8130 XXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKI--VRDQLFFFPDGVTSE 7957
                        P+ L+ SVVYPPELL G    QNP +Y+F++   + +LFFFPD   SE
Sbjct: 180  ADDMIYFLNNSNPKMLICSVVYPPELLRGIKQPQNPSLYSFEVDEKKQKLFFFPDNCKSE 239

Query: 7956 GYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVD 7777
             Y+QP  L WLF+  Y+  G + +T+    S ++HH+F+I PG+ ++E   F+NDFD +D
Sbjct: 240  AYEQPLRLDWLFEAAYIDTGVKRYTVKLIKSAYSHHMFQITPGEYVTESRRFFNDFDTID 299

Query: 7776 MHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFF 7597
            +  + +NRF+ YD  P+   H+ KVYSYLLCLKKPDVESGLAKLRQ+  DD + +   FF
Sbjct: 300  LSIMHENRFRYYDYIPIKKTHLQKVYSYLLCLKKPDVESGLAKLRQMFDDDQDCRVVEFF 359

Query: 7596 EQLCKRFIER-GTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTL 7420
             + CK  IE+    + ++G S  ET    F+K  P    R  K W+  NIFDFL++L TL
Sbjct: 360  SKFCKDIIEKHKNKWELYGFSWLETAKDSFIKSLPIQIARCFKRWEFKNIFDFLFNLQTL 419

Query: 7419 CIEV 7408
             + V
Sbjct: 420  SVSV 423


>gb|AKN08994.1| replicase [Caucasus prunus virus]
          Length = 1986

 Score = 1003 bits (2592), Expect = 0.0
 Identities = 554/1145 (48%), Positives = 732/1145 (63%), Gaps = 18/1145 (1%)
 Frame = -2

Query: 6159 RGRKAAFFSKVGA-DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLG 5983
            + R A FFS+  + DYGHN + Y  N W   +D+++ +      YN+ LIQ Y+ G ++G
Sbjct: 858  KNRDAFFFSESKSIDYGHNRIKYAHNHW-NGVDQLLPS-SLRNDYNAMLIQVYKEGGSIG 915

Query: 5982 LHRDNEIVYSDSEILTVNLSGNCIFRVEVEK-KQIEFEMSDASFFIMPKGFQKKARHGVM 5806
            +HRDNE VY +  IL++NL+G+ +F++E +  K+  F M D  +F+M + FQ K RHGV 
Sbjct: 916  MHRDNEKVYDNDSILSINLNGDALFQIEAKSSKRYSFRMKDGDYFLMKRDFQAKFRHGVQ 975

Query: 5805 -ATSERISITFRTHVRMMNGDKIEKSISLPKKKNKCLISAVSQALKSTEEKVCQALISAN 5629
             AT  RI++TFR HVR    + I   IS  K KN CL+ ++S   K     +  ALI  N
Sbjct: 976  GATEGRINVTFRKHVRNSRNEPIYLGIS--KFKNICLMRSLSILEKRPLYDILLALIKKN 1033

Query: 5628 KPYWLNFIRDDTGASLDDCNELAECLKISLEVHMENDIKIMKFGDTLVRIKYSSGHFS-- 5455
            K YW +F+    G +L D N+ AE L    E++M            + R+  S  HFS  
Sbjct: 1034 KNYWTSFLEFGVGGTLADLNQAAEDLSFRFELYMNEKWIAGGNRGPIYRLNLSDDHFSVH 1093

Query: 5454 -ELKEFINMPRSSFSHLQGK-SNVSATKGLVE-KISNMSHYNLLPFNASGEYLRILRKSF 5284
             EL   +   + +FS  + K SN S++       + ++ H N   F    +   +LR+SF
Sbjct: 1094 RELSGNVEDTQLNFSKAKSKQSNFSSSDDDNSFDLDSIEHVNKSLFEPLNDAAELLRQSF 1153

Query: 5283 LQRTTGVILGEVL-DNGAKYFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKV 5107
            L RTTG IL +   +NGA    +   +   ++    +++   GFAGSGKS  +Q  L   
Sbjct: 1154 LNRTTGKILSDAFGENGAHL--RRIRIVKSDDPFPEEVYFSCGFAGSGKSLSLQSKLKSN 1211

Query: 5106 KKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNG 4927
             K  F V+ PR  L  DW  K+  +   S KVCTFE  + +    +ELIV+DE+ LFP G
Sbjct: 1212 FKLKFLVICPRVELKEDWERKVKCS---SHKVCTFEVALLQNLSRVELIVIDELGLFPRG 1268

Query: 4926 YIDWLVYDLQAS-NSKAEVVLLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGS 4750
            Y+D +++ L+   N K +V+LLFDPLQARYHS+SD   L   H+ DR+    ++NYL+ S
Sbjct: 1269 YLDLMIFKLRTEKNFKGKVMLLFDPLQARYHSDSDERFLHEIHECDRITSGAKINYLFES 1328

Query: 4749 FRLNGSFFRRFNSDLPMLNRGETDSKI-----WIVTCPEDIRGGFGERLQPDVILVDSQV 4585
            +RL+  FF  F  D+ + N G  + ++      IV   E  + GF      D+ILV S+ 
Sbjct: 1329 WRLSKKFFGNFFVDIELRNSGSVNYELDFFDNHIVAANEAKKRGF----PIDLILVASRD 1384

Query: 4584 EKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLG 4405
            EK  +  +   LTFGE+QGLT  H CIVLSE     ++ RW VA TRAKE++SF+ SH  
Sbjct: 1385 EKNSFAGKVNVLTFGEAQGLTVKHSCIVLSEYAEKQDDYRWVVALTRAKEKISFITSHRS 1444

Query: 4404 GLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDP 4225
            GL  F+ +         L G     +    M+  +L+      GG  DE+DRE+RLEGDP
Sbjct: 1445 GLTGFMSSMIGRPIHAFLTGLPFTSNRMNWMVNCELVECHRATGGR-DEVDREDRLEGDP 1503

Query: 4224 FLKPYIFLGQRLEMRE---IEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREY 4054
            FLKP++FLGQR+   E   IEPE     EP+ + HL IS+ N+A A NFDLIR KE RE 
Sbjct: 1504 FLKPFVFLGQRINSEEYEIIEPEVI---EPKGRVHLCISQENYALARNFDLIRAKEYREA 1560

Query: 4053 REDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSED 3874
            +   L T+QFC  YN+ G + +     P+RF+SI+P+H   DD+TFWMAVKKRL F  E 
Sbjct: 1561 KLMGLETNQFCHDYNRVGAQGSRHVASPLRFESIFPRHRSDDDLTFWMAVKKRLRFSEEF 1620

Query: 3873 ENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIR 3694
              R +L D++ +G L+Y++ K    L F +DQGLL+ C+NDFE KKL KS+AT+ +HSIR
Sbjct: 1621 LERAKLKDSYSVGNLLYQNLKEKLSLSFSWDQGLLDECLNDFETKKLLKSKATLANHSIR 1680

Query: 3693 SDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQ 3514
            SD+DW+++ +FLFMKSQLCTK+EKQ+VDAKAGQTLACF HL+L +FAP+CRY+E  +R  
Sbjct: 1681 SDIDWSMDKIFLFMKSQLCTKYEKQYVDAKAGQTLACFSHLVLAKFAPYCRYMEKMLRRN 1740

Query: 3513 LPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKDAGLPD 3334
            L EEIYIHSNKNF+DLN+WV KFF     VESDYEAFDA QD Y+L+FE+ +M+D GLP+
Sbjct: 1741 LKEEIYIHSNKNFNDLNDWVVKFFEEGEKVESDYEAFDASQDHYVLAFEVCVMEDMGLPN 1800

Query: 3333 SLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGD 3154
              I+ YIDLKC L CKLGHFA+MRFTGEF TFLFNTLANMAFT  RYE     PIAFAGD
Sbjct: 1801 WFINDYIDLKCTLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTFARYECDHKTPIAFAGD 1860

Query: 3153 DMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAI 2974
            DMC L    +   FE+V +K+SLKAKV RTE PMFCGW L+ YGIVKEPELV+NRF VA 
Sbjct: 1861 DMCMLKACKVSDKFEDVLSKLSLKAKVIRTEMPMFCGWNLSRYGIVKEPELVFNRFMVAK 1920

Query: 2973 EEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDL 2794
            + G + ECLENYAIEVSYAY+L E+LYEVLK E Q++YHQAVVRFIV  +DKLKTKVKDL
Sbjct: 1921 KRGNIDECLENYAIEVSYAYSLGEKLYEVLKREEQVEYHQAVVRFIVQRLDKLKTKVKDL 1980

Query: 2793 FQEQS 2779
            F +Q+
Sbjct: 1981 FSDQN 1985



 Score =  294 bits (753), Expect = 6e-76
 Identities = 157/423 (37%), Positives = 240/423 (56%), Gaps = 6/423 (1%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIG 8476
            MA ++ +T +E      +KND + I    V  +    + +  HFA+ ++   K+ L+++G
Sbjct: 1    MASVTVRTPMEKFFAANDKNDQRSILTSGVNFVKKFCDDKGIHFAYYVNDRKKEALTNLG 60

Query: 8475 VELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV-----ARQN 8311
            V L P  +L HSHPF KTLENH+L  VLP+++ N  ++F S+K+ K+N ++        N
Sbjct: 61   VTLHPIPFLTHSHPFCKTLENHLLINVLPNLLGNGHWVFTSVKKAKVNSVIKLAGGVSNN 120

Query: 8310 LSLLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWS 8131
            + ++N  +  +D  RY       +   N    ++ F     +++ K+K  F HDEVHHWS
Sbjct: 121  VDIVNRCICAKDFGRYDFEPGSVDQKINILSKDHLFPKNFIRSVRKKK-IFIHDEVHHWS 179

Query: 8130 XXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGY 7951
                           L+ SVV+PPELLGG    QN  +Y F++  D+LFFFPDG  SE Y
Sbjct: 180  HLNMIQFLEETATPLLLCSVVFPPELLGGIKTPQNSALYGFQVDGDKLFFFPDGSRSEMY 239

Query: 7950 QQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMH 7771
            +QP+NL WLF+  Y+     T+T+    S +AHHLF+I  G+ I++ V F+ DF+ +DM 
Sbjct: 240  EQPSNLNWLFEASYIHTSAGTYTVKMVGSFYAHHLFQISKGEKITDSVRFFADFNTIDMS 299

Query: 7770 HIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQ 7591
             I K RFK YDL P+   H+ K+Y+YLLCLKKPDVES +AKLRQ++ D+ + +   FF  
Sbjct: 300  VIHKERFKYYDLIPIKKSHIEKIYTYLLCLKKPDVESAIAKLRQLMEDEQDCRVVEFFCT 359

Query: 7590 LCKRFI-ERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCI 7414
              K+ I +   +  +FG S  +     F+   P++       W   NIF FL+ L T+ +
Sbjct: 360  FAKKLITDTKGAINLFGDSFLQKAKDSFIMALPNSIASCFDRWHGLNIFHFLFTLDTIRV 419

Query: 7413 EVQ 7405
            +V+
Sbjct: 420  KVE 422


>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  947 bits (2447), Expect = 0.0
 Identities = 464/615 (75%), Positives = 520/615 (84%)
 Frame = -2

Query: 4608 VILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERV 4429
            V+LV+S +EKK +      +TFGESQGLTF HVCI+LSES+AASNE RW VA TRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4428 SFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDR 4249
            SF  + LGG+DDF I    +L   IL GE +       M++  LI K     G +DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119

Query: 4248 EERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLK 4069
            EERLEGDPFLKP+IFLGQR+   + + E   +EEPRCQTHLYI+EPNF   YNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4068 EEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLV 3889
            E+REYREDMLVT+QFCDSY+K        T GPMRFK+IYPKHS  DDMTFWMAVKKRL+
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239

Query: 3888 FRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIR 3709
            FR E+EN +RL+ AHL+GGL+YR+FK    L+F +DQGLLE  +N FE KKL+KS+ TI+
Sbjct: 240  FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIK 299

Query: 3708 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLED 3529
            SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 300  SHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359

Query: 3528 QIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 3349
            QIR+QLPEEIY+HSNKNFDDLN WVKKFF RDI VESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360  QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHLMKD 419

Query: 3348 AGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 3169
            A  P ++IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPI
Sbjct: 420  ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479

Query: 3168 AFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 2989
            AFAGDDMCALN+LP+ + F+++F  +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480  AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539

Query: 2988 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 2809
            FQVAIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540  FQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599

Query: 2808 KVKDLFQEQSSDEDI 2764
            KV+DLF EQSSDEDI
Sbjct: 600  KVRDLFLEQSSDEDI 614


>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  945 bits (2443), Expect = 0.0
 Identities = 464/615 (75%), Positives = 519/615 (84%)
 Frame = -2

Query: 4608 VILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERV 4429
            V+LV+S +EKK +      +TFGESQGLTF HVCI+LSES+AASNE RW VA TRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4428 SFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDR 4249
            SF  + LGG+DDF I    +L   IL GE +       M++  LI K     G +DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119

Query: 4248 EERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLK 4069
            EERLEGDPFLKP+IFLGQR+   + + E   +EEPRCQTHLYI+EPNF   YNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4068 EEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLV 3889
            E+REYREDMLVT+QFCDSY+K        T GPMRFK+IYPKHS  DDMTFWMAVKKRL+
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239

Query: 3888 FRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIR 3709
            FR E+EN +RL+ AHL+GGL+YR+FK    L+F +DQGLLE  +N FE KKL+KS+ TIR
Sbjct: 240  FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIR 299

Query: 3708 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLED 3529
            SHSIRSD+DWALNDVFLFMKSQL TK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 300  SHSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359

Query: 3528 QIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 3349
            QIR+QLPEEIY+HSNKNFDDLN WVKKFF RDICVESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360  QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKD 419

Query: 3348 AGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 3169
            A  P ++IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPI
Sbjct: 420  ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479

Query: 3168 AFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 2989
            AFAGDDMCALN+LP+ + F+++F  +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480  AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539

Query: 2988 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 2809
            FQVAIEEGKVMECLENYAIEVSYAY+LSE LYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540  FQVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599

Query: 2808 KVKDLFQEQSSDEDI 2764
            KV+DLF EQSSDEDI
Sbjct: 600  KVRDLFLEQSSDEDI 614


>gb|AQQ73540.1| replicase [Apricot vein clearing associated virus]
          Length = 2022

 Score =  962 bits (2488), Expect = 0.0
 Identities = 561/1341 (41%), Positives = 775/1341 (57%), Gaps = 68/1341 (5%)
 Frame = -2

Query: 6585 LIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDPNSHLWELIAKDGVFMEHEL 6406
            +I   ADG CFFH ++ T     +   + + F  +++  D +    ++  ++G + E  +
Sbjct: 714  IIQASADGRCFFHTLLSTSLFRGSVNNLVNTFCNFIKNLDEHEAARQV--QEGAYPEGWM 771

Query: 6405 IYLFAISRGLKIVVHLNDDVFAFGDGCSEGHIFCDGHHFMAYETFALNCKVSFD----LI 6238
            I LF  + G+++  H +       +  S    FC           +L  +  FD    L 
Sbjct: 772  INLFLANYGIRMCCHQHSADGVTIETGSGPISFC-----------SLKMENHFDYLRCLS 820

Query: 6237 DGIKGYYEPKLEKYKFIQSDFVC-------HSFRGRKAAFFSKVGA-DYGHNGMMYPLNQ 6082
             G+   +   L K  +     +         SFRGR + FF++    DYGHNG  Y    
Sbjct: 821  SGVSKEHTGLLGKTTYPSGPIINALQGLKPKSFRGRSSFFFARSNEIDYGHNGFKYRTEN 880

Query: 6081 WIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTVNLSGNCIFRV 5902
            W   LD+ I +   D  +N+ L+Q Y+ G+ +G H+DNE  Y+   ILTVN  G  +F  
Sbjct: 881  WFAELDDFIPS---DLIFNACLVQVYDKGSKIGFHKDNEQCYAGYPILTVNF-GLALFEF 936

Query: 5901 EVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSE-RISITFRTHVRMMNGDKIEKSIS 5725
            +  +    F ++D    ++   + KK RH V + S+ RIS+TFR HV  MN   +E   +
Sbjct: 937  DSGEA---FNLTDGDTILLSGDYLKKKRHRVTSLSDNRISLTFRRHVCRMNKSPLEFFSN 993

Query: 5724 LPKK-KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLK 5548
              K  KNKC+I AV+ AL  T   V   ++ A +P  L  + DD          +   + 
Sbjct: 994  DGKLGKNKCIIHAVAMALGQTSNTVANKIV-AQRPDLLQCLVDDEMLDKQTTETICVIMN 1052

Query: 5547 ISLEVHMENDIKIMKFG-DTLVRIKYS--SGHFSELKEFINMPRSSFSHLQGKSNVSATK 5377
            +   +  E++ + M+   + L++  +S    H   L +  N        +    +++ + 
Sbjct: 1053 LHATIVNEDEGETMELNPEGLIKSSFSVLDEHMMVLSDVPNCRSKKGIDICMSPDLANSN 1112

Query: 5376 GLVEKISNMSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNL 5197
                      +  ++ + A  E    L  SFL  TTG +L E++  G+++F     ++  
Sbjct: 1113 CAANYEVTCQNLQVIQYQADHERAIKLMNSFLAGTTGAVLNELVFKGSRFFTFMDSVNER 1172

Query: 5196 EECISTQLHCLTGFAGSGKSKVMQDWLSKVKKT--------------------------- 5098
            +     +L  + GFAGSGKS  + + + ++ +                            
Sbjct: 1173 KSDFVEELSFVPGFAGSGKSLGLLNEVKRISREVHLAKEKKRMGKGNGKGHEKKERNRGN 1232

Query: 5097 --PFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGY 4924
                C++SPR  LA DW  KLG +A +   V TFE F K     ++LIV+DE+TLFPNGY
Sbjct: 1233 LKSMCIISPRRNLADDWETKLGPSALEHCSVTTFEIFFKASISKIKLIVVDELTLFPNGY 1292

Query: 4923 IDWLVYDLQASNSKAEVVLLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFR 4744
            ID L++ ++  +   +++L+FDPLQARY S  D  IL  +HDVD ++ D EV+Y+Y S R
Sbjct: 1293 IDLLIFRIRTESPNCKLILIFDPLQARYDSAQDRAILGSEHDVDLILGDSEVDYMYQSKR 1352

Query: 4743 LNGSFFRRFNSDLPMLNRGETDSKIWIVTCPEDIRGGFGERLQP---------------- 4612
                       DL   N  + +S+            G G + +P                
Sbjct: 1353 FESEELFNLFEDLKKKNEVDAESR----------EMGKGAKFRPRMYTNLLTMKVEEENQ 1402

Query: 4611 ----DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTR 4444
                DV+LV S  E  ++ S  +T+TFGESQGLT  H  I+LSE++A S++ RW VA TR
Sbjct: 1403 GNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAILLSENSALSDDHRWLVALTR 1462

Query: 4443 AKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGST 4264
            A+++V+FL  HL GL+ FL   +  L   ++N   +       M+R+KL +         
Sbjct: 1463 ARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLVTKKRLSSMVRAKLNYVKFKGLAGK 1522

Query: 4263 DEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFD 4084
            DE+DRE+RLEGD FLK  IFLGQR E+ E E     + +   +TH ++ + NFAQ YNFD
Sbjct: 1523 DEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVMAKEDMKTHFFVCQENFAQCYNFD 1582

Query: 4083 LIRLKEEREYREDMLVTDQFCDSYN--KRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWM 3910
             IR KE RE+R    VT+QF D+Y   + G K +  T GP+RF++IYP+H   DD+TF M
Sbjct: 1583 NIRAKELREFRIGYRVTNQFIDNYEIVQHGQKKH--TAGPLRFEAIYPRHCADDDVTFLM 1640

Query: 3909 AVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLK 3730
            AV KRL F +E + R +L  AH  G +++ +  +   L F +D  L E CVNDFE KKL+
Sbjct: 1641 AVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTWDNQLFEECVNDFECKKLE 1700

Query: 3729 KSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAP 3550
            KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+VDAKAGQTLACFQH+ILV FAP
Sbjct: 1701 KSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAKAGQTLACFQHMILVTFAP 1760

Query: 3549 WCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSF 3370
            +CRY+E Q+R+QLP EIYIHSNKNF+DLN WVKK+   D+CVESDYEAFDA QD+YILSF
Sbjct: 1761 YCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKYAGDDLCVESDYEAFDASQDQYILSF 1820

Query: 3369 EIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYE 3190
            E+ +M+   +P+ +I AYIDLK  L CKLGHFA+MRFTGEF TFLFNTLANMAFTMCRYE
Sbjct: 1821 ELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTMCRYE 1880

Query: 3189 WRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKE 3010
            W  G PIAFAGDDMCAL +L +   F  VF KISLKAK + TE PMFCGWRL+ +GIVKE
Sbjct: 1881 WNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQITEVPMFCGWRLSKFGIVKE 1940

Query: 3009 PELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVT 2830
            PELVYNRF VA+E G V +CLENYAIEVSYAY+L ERL+++LK E Q++YHQAVVRFIV 
Sbjct: 1941 PELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDILKREEQLEYHQAVVRFIVK 2000

Query: 2829 HIDKLKTKVKDLFQEQSSDED 2767
            H+  L+TKVKDLF EQ SDED
Sbjct: 2001 HLGDLRTKVKDLFAEQ-SDED 2020



 Score =  307 bits (787), Expect = 6e-80
 Identities = 167/418 (39%), Positives = 236/418 (56%), Gaps = 4/418 (0%)
 Frame = -2

Query: 8649 LLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIGVE 8470
            +L+ K+  E    N E      I + A ++L    +    HFA+ +   LK+KLSS+GV 
Sbjct: 4    ILNYKSPSEKFFSNLEMAKKTEIISSAYKSLKQQLDLNGGHFAYEVSASLKEKLSSLGVP 63

Query: 8469 LFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIVARQNLSLL--- 8299
            L P  YL HSHPFSK LENH+L  VLP  I    ++F SIK  K+  +  +   S+L   
Sbjct: 64   LHPTPYLAHSHPFSKMLENHILLNVLPGHITGS-WVFSSIKPSKVESLATKGKKSVLKTI 122

Query: 8298 NEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXXXX 8119
            N ++  +D  RY +VD   +   + + +      + F    K ++   HDEVHHW+    
Sbjct: 123  NRLLCAKDFGRY-DVDTDSSVIRSISREAPDILPEPFIRAVKGRNVMIHDEVHHWTLDDM 181

Query: 8118 XXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR-DQLFFFPDGVTSEGYQQP 7942
                    P R VFSVVYP ELL G   SQNPKMY F+  + D++ FFPDG  SEGY+Q 
Sbjct: 182  LGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIVFFPDGKASEGYEQR 241

Query: 7941 ANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHIF 7762
            ANL WLF   +       WT+ R  S ++HHLFE+VPG   ++++ F+NDF+ +D+  IF
Sbjct: 242  ANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETIDLQCIF 301

Query: 7761 KNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCK 7582
            K+RF   D  P++   V +VYSYL+CLKKPD++S +AKL+Q++GDD++V+  +FF  L  
Sbjct: 302  KSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFFRSLVH 361

Query: 7581 RFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEV 7408
            R +     F +F  S+      KF+   PD  +    TWK  N FDFL  L  L +EV
Sbjct: 362  RILNESECFSLFDVSIVNKWKKKFLDFAPDWLLHGFMTWKSGNFFDFLMSLKILQVEV 419


>gb|AKN09002.1| replicase [Apricot vein clearing associated virus]
          Length = 2021

 Score =  959 bits (2478), Expect = 0.0
 Identities = 567/1344 (42%), Positives = 773/1344 (57%), Gaps = 71/1344 (5%)
 Frame = -2

Query: 6585 LIDVPADGNCFFHAIIKTF---ECVENHVEMRSDFSCWLRERDPNSHLWELIAKDGVFME 6415
            +I   ADG CFFH ++ T      V N V    +F      ++ N H      ++G + E
Sbjct: 714  IIRASADGRCFFHTLLSTSLFGGSVNNLVNTFCNFI-----KNLNEHEAARQVQEGAYPE 768

Query: 6414 HELIYLFAISRGLKIVVHLNDDVFAFGDGCSEGHIFCDGHHFMAYETFALNCKVSFD--- 6244
              +I LF  + G+++  H +       +  S    FC           +L  +  FD   
Sbjct: 769  GWMINLFLANYGIRMCCHQHSADGVTIETGSGPISFC-----------SLKMENHFDYLR 817

Query: 6243 -LIDGIKGYYEPKLEKYKFIQSDFVC-------HSFRGRKAAFFSKVGA-DYGHNGMMYP 6091
             L  G+   +   L K  +     +         SFRGR + FF++    DYGHNG  Y 
Sbjct: 818  CLSSGVSKEHTGLLGKTTYPSGPIINALQGLKPKSFRGRSSFFFARSNEIDYGHNGFKYR 877

Query: 6090 LNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTVNLSGNCI 5911
               W   LD+ I +   D  +N+ L+Q Y+ G+ +G H+DNE  Y+   ILTVN  G  +
Sbjct: 878  TENWFAELDDFIPS---DLIFNACLVQVYDKGSKIGFHKDNEQCYAGYPILTVNF-GLAL 933

Query: 5910 FRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVMATSE-RISITFRTHVRMMNGDKIEK 5734
            F  +  +    F ++D    ++   + KK RH V + S+ RIS+TFR HV  MN   +E 
Sbjct: 934  FEFDSGEA---FNLTDGDTILLSGDYLKKKRHRVTSLSDNRISLTFRRHVCRMNKSPLEF 990

Query: 5733 SISLPKK-KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAE 5557
              +  K  KNKC+I AV+ AL  T   V   ++ A +P  L  + DD          +  
Sbjct: 991  FSNDGKLGKNKCIIHAVAMALGQTSNTVANKIV-AQRPDLLQCLVDDEMLDKQTTEAICV 1049

Query: 5556 CLKISLEVHMENDIKIMKFG-DTLVRIKYS--SGHFSELKEFINMPRSSFSHLQGKSNVS 5386
             + +   +  E++ + M+   + L++  +S    H   L +  N        +    +++
Sbjct: 1050 IMNLHATIVNEDEGETMELNPEGLIKSSFSVLDEHMMVLSDVPNCMSKKGIDICMSPDLA 1109

Query: 5385 ATKGLVEKISNMSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFEL 5206
             +   V       +  ++ + A  E    L  SFL  TTG +L E++  G+++F     +
Sbjct: 1110 NSNCAVNYEVTCQNLQVIQYQADHERAIKLMNSFLAGTTGAVLNELVFKGSRFFTFMDSV 1169

Query: 5205 SNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKT------------------------ 5098
            +  +     +L  + GFAGSGKS  + + + ++ +                         
Sbjct: 1170 NERKSDFVEELSFVPGFAGSGKSLGLLNEVKRISREIHLAKEKKRMGKGDGKGHEKKERN 1229

Query: 5097 -----PFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFP 4933
                   C++SPR  LA DW  KLG +A +   V TFE F K     ++LIV+DE+TLFP
Sbjct: 1230 RGNLKSMCIISPRRNLADDWETKLGPSALEHCSVTTFEVFFKASISKIKLIVVDELTLFP 1289

Query: 4932 NGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYG 4753
            NGYID L++ ++  +   +++L+FDPLQARY S  D  IL  +HDVD ++ D EV+Y+Y 
Sbjct: 1290 NGYIDLLIFRIRTESPNCKLILIFDPLQARYDSAQDRAILGSEHDVDLILGDSEVDYMYQ 1349

Query: 4752 SFRLNGSFFRRFNSDLPMLNRGETDSKIWIVTCPEDIRGGFGERLQP------------- 4612
            S R           DL    R E D+        E    G G + +P             
Sbjct: 1350 SKRFESEELFNLFEDL---KRNEVDA--------ESQETGKGAKFRPRMYTNLLTMKVEE 1398

Query: 4611 -------DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVA 4453
                   DV+LV S  E  ++ S  +T+TFGESQGLT  H  I+LSE++A S++ RW VA
Sbjct: 1399 ENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAILLSENSALSDDHRWLVA 1458

Query: 4452 WTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIG 4273
             TRA+++V+FL  HL GL+ FL   +  L   ++N   +       M+R+KL +      
Sbjct: 1459 LTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLITKKRLSSMVRAKLNYVKFKGL 1518

Query: 4272 GSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAY 4093
               DE+DRE+RLEGD FLK  IFLGQR E+ E E     + +   +TH ++ + NFAQ Y
Sbjct: 1519 AGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVIAKEDMKTHFFVCQENFAQCY 1578

Query: 4092 NFDLIRLKEEREYREDMLVTDQFCDSYN--KRGPKCNDTTVGPMRFKSIYPKHSHGDDMT 3919
            NFD IR KE RE+R    VT+QF D+Y   + G K +  T GP+RF++IYP+H   DD+T
Sbjct: 1579 NFDNIRAKELREFRIGHRVTNQFIDNYEIVQHGQKKH--TAGPLRFEAIYPRHCADDDVT 1636

Query: 3918 FWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVK 3739
            F MAV KRL F +E + R +L  AH  G +++ +  +   L F +D  L E CVNDFE K
Sbjct: 1637 FLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTWDNQLFEECVNDFECK 1696

Query: 3738 KLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQ 3559
            KL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+VDAKAGQTLACFQH+ILV 
Sbjct: 1697 KLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAKAGQTLACFQHMILVT 1756

Query: 3558 FAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYI 3379
            FAP+CRY+E Q+R+QLP EIYIHSNKNF+DLN WVKK+   D+CVESDYEAFDA QD+YI
Sbjct: 1757 FAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKYAGDDLCVESDYEAFDASQDQYI 1816

Query: 3378 LSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMC 3199
            LSFE+ +M+   +P+ +I AYIDLK  L CKLGHFA+MRFTGEF TFLFNTLANMAFTM 
Sbjct: 1817 LSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTMR 1876

Query: 3198 RYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGI 3019
            RYEW  G PIAFAGDDMCAL +L +   F  VF KISLKAK + TE PMFCGWRL+ +GI
Sbjct: 1877 RYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQITEVPMFCGWRLSKFGI 1936

Query: 3018 VKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRF 2839
            VKEPELVYNRF VA+E G V +CLENYAIEVSYAY+L ERL+++LK E Q++YHQAVVRF
Sbjct: 1937 VKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDILKREEQLEYHQAVVRF 1996

Query: 2838 IVTHIDKLKTKVKDLFQEQSSDED 2767
            IV H+  L+TKVKDLF EQ SDED
Sbjct: 1997 IVKHLGDLRTKVKDLFAEQ-SDED 2019



 Score =  308 bits (788), Expect = 4e-80
 Identities = 167/418 (39%), Positives = 236/418 (56%), Gaps = 4/418 (0%)
 Frame = -2

Query: 8649 LLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSSIGVE 8470
            +L+ K+  E    N E      I + A ++L    +    HFA+ +   LK+KLSS+GV 
Sbjct: 4    ILNYKSPSEKFFSNLEMAKKTEIISSAYKSLKQQLDLNGGHFAYEVSASLKEKLSSLGVP 63

Query: 8469 LFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIVARQNLSLL--- 8299
            L P  YL HSHPFSK LENH+L  VLP  I    ++F SIK  K+  +  +   S+L   
Sbjct: 64   LHPTPYLAHSHPFSKMLENHILLNVLPGHITGS-WVFSSIKPSKVESLATKGKKSVLRTV 122

Query: 8298 NEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXXXX 8119
            N ++  +D  RY +VD   +   + + +      + F    K ++   HDEVHHW+    
Sbjct: 123  NRLLCAKDFGRY-DVDTDSSVIRSISREAPDILPEPFIRAVKGRNVMIHDEVHHWTLDDM 181

Query: 8118 XXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR-DQLFFFPDGVTSEGYQQP 7942
                    P R VFSVVYP ELL G   SQNPKMY F+  + D++ FFPDG  SEGY+Q 
Sbjct: 182  LGFLDRARPNRFVFSVVYPVELLAGIPESQNPKMYKFQDSKSDKIVFFPDGKASEGYEQR 241

Query: 7941 ANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHIF 7762
            ANL WLF   +       WT+ R  S ++HHLFE+VPG   ++++ F+NDF+ +D+  IF
Sbjct: 242  ANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETIDLQCIF 301

Query: 7761 KNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCK 7582
            K+RF   D  P++   V +VYSYL+CLKKPD++S +AKL+Q++GDD++V+  +FF  L  
Sbjct: 302  KSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFFRSLVH 361

Query: 7581 RFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEV 7408
            R +     F +F  S+      KF+   PD  +    TWK  N FDFL  L  L +EV
Sbjct: 362  RILNESECFSLFDVSIVNKWKKKFLDFAPDWLLHGFMTWKSGNFFDFLMSLKILQVEV 419


>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
            virus]
 emb|CDF66416.2| replication-associated polyprotein [Apricot vein clearing associated
            virus]
          Length = 1679

 Score =  944 bits (2440), Expect = 0.0
 Identities = 527/1187 (44%), Positives = 713/1187 (60%), Gaps = 55/1187 (4%)
 Frame = -2

Query: 6165 SFRGRKAAFFSKVGA-DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGAT 5989
            SFRGR + FF++    DYGHNG  Y    W   LD+ I +   D  +N+ L+Q Y+ G+ 
Sbjct: 510  SFRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIPS---DLIFNACLVQVYDKGSK 566

Query: 5988 LGLHRDNEIVYSDSEILTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGV 5809
            +G H+DNE  Y+   ILTVN  G  +F  +  +    F ++D    ++   + +K RH V
Sbjct: 567  IGFHKDNEQCYAGYPILTVNF-GLALFEFDSGEA---FNLTDGDTILLSGDYLRKKRHRV 622

Query: 5808 MATSE-RISITFRTHVRMMNGDKIEKSISLPKK-KNKCLISAVSQALKSTEEKVCQALIS 5635
             + S+ RIS+TFR HV  MN   +E   +  K  KNKC+I AV+ AL  T   V   ++ 
Sbjct: 623  TSLSDSRISLTFRRHVCRMNKSPLEFFSNNGKLGKNKCIIHAVAMALGQTSNTVANKIV- 681

Query: 5634 ANKPYWLNFIRDDTGASLDDCNELAECLKISLEVHMENDIKIMKFG-DTLVRIKYS--SG 5464
            A +P  L  + DD          +   + +   +  E++ + M+   + L++  +S    
Sbjct: 682  AQRPDLLQCLVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVLDE 741

Query: 5463 HFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKISNMSHYNLLPFNASGEYLRILRKSF 5284
            H   L +  N        +    +++ +           +  ++ + A  E    L  SF
Sbjct: 742  HMMVLSDIPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMNSF 801

Query: 5283 LQRTTGVILGEVLDNGAKYFNQSFELSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVK 5104
            L  TTG +L E++  G+++F     ++  +     +L  + GFAGSGKS  + + + ++ 
Sbjct: 802  LAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKRIS 861

Query: 5103 KT-----------------------------PFCVVSPRNVLASDWVFKLGLNAKDSGKV 5011
            +                                C++SPR  LA DW  KLG +A +   V
Sbjct: 862  REIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHCSV 921

Query: 5010 CTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSE 4831
             TFE   K     ++LIV+DE+TLFPNGYID L++ ++  +   +++L+FDPLQARY S 
Sbjct: 922  TTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYDSA 981

Query: 4830 SDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGETDSKIWIVTCP 4651
             D  IL  +HDVD ++ D EV+Y+Y S R           DL    + E D+        
Sbjct: 982  QDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDL---KKNEVDA-------- 1030

Query: 4650 EDIRGGFGERLQP--------------------DVILVDSQVEKKMYESQFRTLTFGESQ 4531
            E    G G + +P                    DV+LV S  E  ++ S  +T+TFGESQ
Sbjct: 1031 ESRETGKGAKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQ 1090

Query: 4530 GLTFGHVCIVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKIL 4351
            GLT  H  I+LSE++A S++ RW VA TRA+++V+FL  HL GL+ FL   +  L   ++
Sbjct: 1091 GLTVDHAAILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVI 1150

Query: 4350 NGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIE 4171
            N   +       M+R+KL +         DE+DRE+RLEGD FLK  IFLGQR E+ E E
Sbjct: 1151 NKGLVTKKRLSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPE 1210

Query: 4170 PETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKC 3991
                 + +   +TH ++ + NFAQ YNFD IR KE RE+R    VT+QF D+Y       
Sbjct: 1211 IVEPVMAKEDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHVQ 1270

Query: 3990 NDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFK 3811
               T GP+RF++IYP+H   DD+TF MAV KRL F +E + R +L  AH  G +++ +  
Sbjct: 1271 KKHTAGPLRFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLI 1330

Query: 3810 RTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTK 3631
            +   L F +D  L E CVNDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK
Sbjct: 1331 QKLGLNFTWDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTK 1390

Query: 3630 FEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVK 3451
            +EKQ+VDAKAGQTLACFQH+ILV FAP+CRY+E Q+R+QLP EIYIHSNKNF+DLN WVK
Sbjct: 1391 YEKQYVDAKAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVK 1450

Query: 3450 KFFMRDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFA 3271
            K    D+CVESDYEAFDA QD+YILSFE+ +M+   +P+ +I AYIDLK  L CKLGHFA
Sbjct: 1451 KHAGDDLCVESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFA 1510

Query: 3270 VMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKI 3091
            +MRFTGEF TFLFNTLANMAFTMCRYEW  G PIAFAGDDMCAL +L +   F  VF KI
Sbjct: 1511 IMRFTGEFSTFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKI 1570

Query: 3090 SLKAKVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYN 2911
            SLKAK + TE PMFCGWRL+ +GIVKEPELVYNRF VA+E G V +CLENYAIEVSYAY+
Sbjct: 1571 SLKAKTQITEVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYS 1630

Query: 2910 LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDE 2770
            L ERL+++LK E Q++YHQAVVRFIV H+  L+TKVKDLF EQS+++
Sbjct: 1631 LGERLFDILKREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677



 Score =  274 bits (701), Expect = 5e-70
 Identities = 161/417 (38%), Positives = 227/417 (54%), Gaps = 7/417 (1%)
 Frame = -2

Query: 8655 MALLSNKTAIECMLGNFEKNDIKRIYNPAVETLVSHSEFRNSHFAFAMDPFLKKKLSS-- 8482
            MALL     +  +LG+F +  ++ IYN   E        R   F    +   KK  S   
Sbjct: 1    MALLYRTPQVN-LLGSFPQKHVEIIYNLQFERFKKICICRFCIFLTHSEKNQKKVASIRG 59

Query: 8481 -IGVELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIVARQNLS 8305
             +GV L P  YL HSHPFSK LENH+L  VLP  I    ++F SIK  K+  +  +   S
Sbjct: 60   WLGVPLHPTPYLAHSHPFSKMLENHILLNVLPGHITGS-WVFSSIKPSKVESLATKGKKS 118

Query: 8304 LL---NEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHW 8134
            +L   N ++  +D  RY +VD   +   + + +      + F    K ++   HDEVHHW
Sbjct: 119  VLKTINRLLCAKDFGRY-DVDTDSSVIRSISREAPDILPEPFVRAVKGRNVMIHDEVHHW 177

Query: 8133 SXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR-DQLFFFPDGVTSE 7957
            +            P R VFSVVYP ELL G   SQNPKMY F+  + D++ FFPDG  SE
Sbjct: 178  TLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIVFFPDGRASE 237

Query: 7956 GYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVD 7777
            GY+Q ANL WLF   +       WT+ R  S ++HHLFE+VPG   ++++ F+NDF+ +D
Sbjct: 238  GYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETID 297

Query: 7776 MHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFF 7597
            +  IFK+RF   D  P++   V +VYSYL+CLKKPD++S +AKL+Q++GDD++V+  +FF
Sbjct: 298  LQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFF 357

Query: 7596 EQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLG 7426
              L  R +     F +F  S+      KF+   PD  +    TWK  N   F+  LG
Sbjct: 358  RSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWKSGN---FIKKLG 411