BLASTX nr result
ID: Rehmannia32_contig00000007
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia32_contig00000007
(7291 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1] 4078 0.0
gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2] 4018 0.0
gb|AKN59247.1| polyprotein [Lychnis mottle virus] 3994 0.0
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot... 3652 0.0
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus] 1226 0.0
ref|YP_227370.1| helicase [Strawberry latent ringspot virus] 976 0.0
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v... 941 0.0
ref|YP_227372.1| protease [Strawberry latent ringspot virus] 500 e-158
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]... 353 3e-94
gb|AAZ76594.1| polyprotein, partial [Stocky prune virus] 321 2e-89
ref|YP_009220374.1| polyprotein [Currant latent virus] >gi|96655... 335 2e-88
gb|AHN52254.1| polyprotein, partial [Currant latent virus] 306 8e-85
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe... 303 7e-84
gb|ANC51274.1| polyprotein [Cherry rasp leaf virus] 317 5e-83
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ... 296 1e-81
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus] 312 1e-81
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] >gi|820027... 307 5e-80
ref|YP_007697622.1| polyprotein [Arracacha virus B] >gi|38572452... 303 8e-79
gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus] 233 1e-70
ref|YP_009389536.1| polyprotein [Lettuce necrotic leaf curl viru... 273 1e-69
>gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]
Length = 2205
Score = 4078 bits (10575), Expect = 0.0
Identities = 1997/2209 (90%), Positives = 2073/2209 (93%)
Frame = -3
Query: 7046 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 6867
MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 6866 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 6687
+NLQVERDRC MRE+EE ELL+AD+E+EFMSEL+ F++P PF G+SFGTV+ T P +G S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTVPKIGSS 120
Query: 6686 YVHQTIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 6507
Y + I KA GLDVEEY K+QAP+AG+RNFL+ + DAE LT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPKAGVRNFLQPNCRTDAEVLTTIVRTAIENPGFGNPSF 180
Query: 6506 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMTQA 6327
DYTGLGGDEFKYRFDKDGLFADD LGLARFVSAGFTE P VAPLTSGD VM QA
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSRPNVFDVAPLTSGDFKVMIQA 240
Query: 6326 LSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPG 6147
LSDEW EWIYFEEDYEE L E ++FFPF LE+ K+ PLSPT VLDSADSYLPG
Sbjct: 241 LSDEWSEWIYFEEDYEEALSEEFEIFFPF---LESAKVCEPA-PLSPTSVLDSADSYLPG 296
Query: 6146 TKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEP 5967
TKWVYDSDEED+IPVAPIDRFHNKKFD+DF DYCDTEY +QP + YTETWF+DGCLP P
Sbjct: 297 TKWVYDSDEEDHIPVAPIDRFHNKKFDLDFEDYCDTEYLEQPAETVYTETWFIDGCLPGP 356
Query: 5966 WFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKK 5787
WF RG LDEAIICEKLPL+GKSPLEL+IQYQV+PTGDLL D+QRALFAYYEKEA PNKK
Sbjct: 357 WFKRGVSLDEAIICEKLPLIGKSPLELIIQYQVKPTGDLLLDVQRALFAYYEKEAWPNKK 416
Query: 5786 YFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGV 5607
+FDLNGVPT+LVFEDWR DLRYCLYAP V+GNQLKHLMAIV+APLPGWLLDFPKR+KSG
Sbjct: 417 HFDLNGVPTMLVFEDWRCDLRYCLYAPFVQGNQLKHLMAIVDAPLPGWLLDFPKRQKSGT 476
Query: 5606 LQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 5427
LQASGWNPLRYF KQ TLGFLDGV++KLRELLGPVINAAGYVWDLIIKAKDYAF+MLDEM
Sbjct: 477 LQASGWNPLRYFSKQATLGFLDGVIAKLRELLGPVINAAGYVWDLIIKAKDYAFAMLDEM 536
Query: 5426 VSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 5247
+SKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 537 ISKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 596
Query: 5246 LGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXXXXXEKEEWLRELMASPHSI 5067
LGQAHMGALKRSTKIWELVQKWDQPSEV+R EKEEW RELMASPHSI
Sbjct: 597 LGQAHMGALKRSTKIWELVQKWDQPSEVRRIDEEIVEILVEESPEKEEWFRELMASPHSI 656
Query: 5066 PECVIDLTHMKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 4887
PECVIDLTHMKDLLG +CS+FKEAFEVG VASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 657 PECVIDLTHMKDLLGGKCSSFKEAFEVGTSVASSPGMLFGSGFIWKILLLLCPLSMFGVS 716
Query: 4886 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 4707
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYAT+GVDFQAWR
Sbjct: 717 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATIGVDFQAWR 776
Query: 4706 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 4527
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 777 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 836
Query: 4526 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 4347
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG
Sbjct: 837 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 896
Query: 4346 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSD 4167
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR LEAKGNTCCTSD
Sbjct: 897 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 956
Query: 4166 FVFITANQAGLTPNAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3987
FVFITANQAGLTP AVVHC+KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 957 FVFITANQAGLTPGAVVHCRKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1016
Query: 3986 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPF 3807
RFQVMNYEQFLQYTVNQS+QHFSEQVDLRDAPHTQ+F AADQIAAEAEEGF+ AGIKVPF
Sbjct: 1017 RFQVMNYEQFLQYTVNQSRQHFSEQVDLRDAPHTQIFAAADQIAAEAEEGFQTAGIKVPF 1076
Query: 3806 TMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLK 3627
TMLKSLSGDQLTYYSEE+MME+TETLTPEDADIIRSRLDPG+ITQQLQMLLPKAAYVNLK
Sbjct: 1077 TMLKSLSGDQLTYYSEEKMMEITETLTPEDADIIRSRLDPGVITQQLQMLLPKAAYVNLK 1136
Query: 3626 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKA 3447
NHFGLGTDPFEQPNPYFNCSQRAKVIGRF++PKVTEEQLEQHKRGF +AKELAQGACKA
Sbjct: 1137 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEQHKRGFVVIAKELAQGACKA 1196
Query: 3446 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 3267
INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYT PCLLTFATLGTMKASGSLSSSQDQ
Sbjct: 1197 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTTPCLLTFATLGTMKASGSLSSSQDQET 1256
Query: 3266 XXXXXXXXXXRYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 3087
RYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1257 RRTASGRERRRYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 1316
Query: 3086 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 2907
TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV
Sbjct: 1317 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 1376
Query: 2906 LKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 2727
LK+EKWLLSSHDPFMAGSGWFMEMLFR +GVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1377 LKIEKWLLSSHDPFMAGSGWFMEMLFRDHGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1436
Query: 2726 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 2547
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKD II
Sbjct: 1437 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDAII 1496
Query: 2546 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAP 2367
AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPS AP
Sbjct: 1497 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSEAP 1556
Query: 2366 RQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 2187
RQATTSEI+KSSISADLEALTGEK+KTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD
Sbjct: 1557 RQATTSEIRKSSISADLEALTGEKKKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 1616
Query: 2186 MSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 2007
MSPVTEEE+KIWDLTWDSIFDLPGGIE+KCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP
Sbjct: 1617 MSPVTEEEQKIWDLTWDSIFDLPGGIEKKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 1676
Query: 2006 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 1827
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL
Sbjct: 1677 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 1736
Query: 1826 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1647
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1737 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1796
Query: 1646 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVA 1467
KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG+RRLHLMLAATTRLGVA
Sbjct: 1797 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGNRRLHLMLAATTRLGVA 1856
Query: 1466 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 1287
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS+SLFFSDCVELAVVGDDNLV
Sbjct: 1857 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV 1916
Query: 1286 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 1107
SVKE+AAS+FNLKKLS+FLADFGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1917 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1976
Query: 1106 LAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 927
LAP LHWVRETNMSNA ATQNNVEGFLRELFHYGDK LYCKWRRDLIDLCSK
Sbjct: 1977 LAPLSWLSLSESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKNLYCKWRRDLIDLCSK 2036
Query: 926 NRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKW 747
NRVPHPTTYSFEELERSWLSGKSVASIFEKEE E++VIRD ASDVAPGVHIVPV+QCLKW
Sbjct: 2037 NRVPHPTTYSFEELERSWLSGKSVASIFEKEEPEIIVIRDSASDVAPGVHIVPVRQCLKW 2096
Query: 746 KTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTG 567
GEVPNVVWCGPNCPNQLRNA++CFQIQAPQGS+YPLRNT RNLLKKVHQRGDEVYFTG
Sbjct: 2097 NAGEVPNVVWCGPNCPNQLRNASSCFQIQAPQGSKYPLRNTTRNLLKKVHQRGDEVYFTG 2156
Query: 566 ALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTVAAKGW 420
+LNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2157 SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2205
>gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]
Length = 2209
Score = 4018 bits (10420), Expect = 0.0
Identities = 1956/2209 (88%), Positives = 2057/2209 (93%)
Frame = -3
Query: 7046 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 6867
MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 6866 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 6687
+NLQVERDRC MRE+EE ELL+AD+E+EFMSEL+ F++P PF G+SFGTV+ T P +G S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTDPKIGSS 120
Query: 6686 YVHQTIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 6507
Y + I KA GLDVEEY K+QAPRAG RNFL+ + D E LT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPRAGARNFLQPNCRTDVEVLTTIVRTAIENPGFGNPSF 180
Query: 6506 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMTQA 6327
DYTGLGGDEFKYRFDKDGLFADD LGLARFVSAGFTE P VAPLTSGD +VM +A
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSKPNVFDVAPLTSGDFNVMMRA 240
Query: 6326 LSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPG 6147
LSDEW EW YFEEDYEE L EG ++FFP +ET K + + P SPTCVLDSADSYL G
Sbjct: 241 LSDEWVEWCYFEEDYEEALTEGFELFFPPHNGVETLKSSLGSGPSSPTCVLDSADSYLSG 300
Query: 6146 TKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEP 5967
TKWVYDSDEE+Y+PVAP+D+FHNKKF++DF+DYCD EY +QPVGS TETWF+DGCLP P
Sbjct: 301 TKWVYDSDEEEYVPVAPVDQFHNKKFNLDFIDYCDLEYIEQPVGSLRTETWFIDGCLPGP 360
Query: 5966 WFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKK 5787
WF RG +DEA+ICEKLPL+GKSPLEL+IQYQV PTGDLL DIQRALFAYYE+EALPNKK
Sbjct: 361 WFKRGALIDEAVICEKLPLIGKSPLELIIQYQVAPTGDLLLDIQRALFAYYEREALPNKK 420
Query: 5786 YFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGV 5607
+FDLNGVPTLLVFEDWRADLRYCL+AP + GNQLKHLM +++ PLPGWLLDFPKR++SG+
Sbjct: 421 FFDLNGVPTLLVFEDWRADLRYCLFAPFISGNQLKHLMVVIDTPLPGWLLDFPKRQRSGL 480
Query: 5606 LQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 5427
LQASGWNPLRYF KQ TLGFLDGVV+KLRELLGPVINAAGYVWDL+IKAKDYAFSMLDEM
Sbjct: 481 LQASGWNPLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLVIKAKDYAFSMLDEM 540
Query: 5426 VSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 5247
+SKRGEIL+ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 541 ISKRGEILRALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 600
Query: 5246 LGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXXXXXEKEEWLRELMASPHSI 5067
LG AHMGALKRSTKIWELVQKWD+PSEVK EKEEWLRELMASPHS+
Sbjct: 601 LGHAHMGALKRSTKIWELVQKWDKPSEVKCIDGEIIDILIEESPEKEEWLRELMASPHSV 660
Query: 5066 PECVIDLTHMKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 4887
PECVIDLTHMKDLLG +CSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 661 PECVIDLTHMKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 720
Query: 4886 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 4707
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTG KSEFLDYIYATVGVDFQAWR
Sbjct: 721 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGGKSEFLDYIYATVGVDFQAWR 780
Query: 4706 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 4527
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 781 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 840
Query: 4526 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 4347
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDD+LDSLDYAQTGRVFSRNG
Sbjct: 841 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDLLDSLDYAQTGRVFSRNG 900
Query: 4346 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSD 4167
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR LEAKGNTCCTSD
Sbjct: 901 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 960
Query: 4166 FVFITANQAGLTPNAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3987
FVFITANQAGLTP AVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 961 FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1020
Query: 3986 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPF 3807
RFQVMNYEQFLQY VNQSKQHFSEQVDLRDAPHTQ+F+AADQIAAEAEEGF+ AGIK+PF
Sbjct: 1021 RFQVMNYEQFLQYAVNQSKQHFSEQVDLRDAPHTQIFSAADQIAAEAEEGFQTAGIKIPF 1080
Query: 3806 TMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLK 3627
MLKSLSGDQLTYYSEE+MMEVTETL PEDADIIRSRLDPG+ITQQLQ LLPKAAYVNLK
Sbjct: 1081 CMLKSLSGDQLTYYSEEKMMEVTETLAPEDADIIRSRLDPGMITQQLQALLPKAAYVNLK 1140
Query: 3626 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKA 3447
NHF LGTDPFEQPNPYFNCSQRAKVIGRF++PKVTEEQLE HKRGF +AKELAQGA KA
Sbjct: 1141 NHFSLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEHHKRGFMMIAKELAQGAYKA 1200
Query: 3446 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 3267
++DAPFLVKLLLGFGALYFVG PLLSWLKSLYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1201 VSDAPFLVKLLLGFGALYFVGAPLLSWLKSLYTAPCLLTFTTLGAMKASGSLSSSQDQET 1260
Query: 3266 XXXXXXXXXXRYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 3087
RYLLEASGPGAVEAKAQDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1261 RRTASGRERRRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGG 1320
Query: 3086 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 2907
TRVLMVYHVWLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTFVSFPV
Sbjct: 1321 TRVLMVYHVWLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFVSFPV 1380
Query: 2906 LKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 2727
LKLEKWLLSSHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1381 LKLEKWLLSSHDPFMAGSGWFMEMLFQKNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1440
Query: 2726 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 2547
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTII
Sbjct: 1441 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTII 1500
Query: 2546 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAP 2367
AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL+PS AP
Sbjct: 1501 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLQPSDAP 1560
Query: 2366 RQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 2187
RQAT+SEIKKSSISADLE LTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAAD
Sbjct: 1561 RQATSSEIKKSSISADLEMLTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAAD 1620
Query: 2186 MSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 2007
MSPVTE+EEKIW+LTWDSIFDLPGGI KCHLLSEDENLNGVNGDNEYRGMVV+TSEGWP
Sbjct: 1621 MSPVTEDEEKIWNLTWDSIFDLPGGIASKCHLLSEDENLNGVNGDNEYRGMVVTTSEGWP 1680
Query: 2006 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 1827
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRI+DMDELC TTIPCIVGLDTAKDERL
Sbjct: 1681 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRIVDMDELCKTTIPCIVGLDTAKDERL 1740
Query: 1826 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1647
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1741 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1800
Query: 1646 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVA 1467
KRMHAKGTNWFNGD SRFDGVTPRCLL+EI+RRITLLY DDQGDRRLHLMLAATTRLGVA
Sbjct: 1801 KRMHAKGTNWFNGDSSRFDGVTPRCLLVEISRRITLLYGDDQGDRRLHLMLAATTRLGVA 1860
Query: 1466 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 1287
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV
Sbjct: 1861 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 1920
Query: 1286 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 1107
SVK+IAA++FNLKKLSSFLA FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1921 SVKQIAAADFNLKKLSSFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1980
Query: 1106 LAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 927
LAP LHWVRETNMSN+ ATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK
Sbjct: 1981 LAPLSWLSLSESLHWVRETNMSNSAATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 2040
Query: 926 NRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKW 747
NRVPHPTTYSFEELERSWLSGK+VASIFEKEE EV+VIRDGASD+AP VHI+PVQQCLKW
Sbjct: 2041 NRVPHPTTYSFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPDVHIIPVQQCLKW 2100
Query: 746 KTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTG 567
++ EVPNVVWCGPNCPNQL+NA+TCFQIQAPQGS+YPLR+T+RN LKKVHQRGD+VYFTG
Sbjct: 2101 RSDEVPNVVWCGPNCPNQLKNASTCFQIQAPQGSKYPLRSTIRNFLKKVHQRGDKVYFTG 2160
Query: 566 ALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTVAAKGW 420
A+NQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2161 AINQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTIAAKGW 2209
>gb|AKN59247.1| polyprotein [Lychnis mottle virus]
Length = 2260
Score = 3994 bits (10358), Expect = 0.0
Identities = 1954/2260 (86%), Positives = 2057/2260 (91%), Gaps = 51/2260 (2%)
Frame = -3
Query: 7046 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 6867
MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 6866 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 6687
+NLQVERDRC MRE+EE ELL+AD+E+EF+SEL+ FV+P F G+SFGT++ T P +G S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFVSELMDFVAPFSFPGISFGTISMTTPKIGAS 120
Query: 6686 YVHQTIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 6507
Y + IFKA G DVEEYTK+QAP+AG RNFL+ DR DAE LT VVRTAI NPGFGNPSF
Sbjct: 121 YAGRKIFKAKGFDVEEYTKFQAPKAGARNFLQPDRKSDAEILTTVVRTAIENPGFGNPSF 180
Query: 6506 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGF------------------------- 6402
DYTGLGGDEF+YRF KDGLFADD LGLARFVSAGF
Sbjct: 181 DYTGLGGDEFRYRFGKDGLFADDDLGLARFVSAGFTEGSRSNALDVAPLTPGDLDVISFG 240
Query: 6401 --------------------------TESLGPENRSVAPLTSGDMDVMTQALSDEWCEWI 6300
TE VAPLT GD+DVMTQALSDEW W
Sbjct: 241 TISMTNPKIGASYAGRKLARFVSAGFTEGSRSNALDVAPLTPGDLDVMTQALSDEWVGWY 300
Query: 6299 YFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPGTKWVYDSDE 6120
+ EEDYEE L+E ++FP +++ + +E LSPTCVLDSADSY PGTKWVYDSDE
Sbjct: 301 HLEEDYEEALIEEFALYFPPHDRVKDTESLLGSESLSPTCVLDSADSYPPGTKWVYDSDE 360
Query: 6119 EDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEPWFMRGTPLD 5940
EDY+P AP+DRFHNKKF++DF+DYCD E +QP + YTETWF+DGCLP WF RGTP+D
Sbjct: 361 EDYVPTAPVDRFHNKKFNLDFIDYCDMECVEQPAENIYTETWFIDGCLPGFWFKRGTPID 420
Query: 5939 EAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKKYFDLNGVPT 5760
EA++CEKLPL+GKSPLELMIQYQV+PTGDLL D+QRALFAYYEKEALPNKK+FDLNGVPT
Sbjct: 421 EAVVCEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEKEALPNKKFFDLNGVPT 480
Query: 5759 LLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGVLQASGWNPL 5580
LLVFEDWRADLRYCL+AP ++GNQLKHLM +++APLPGWLLDFPKR+KSG+LQASGWNPL
Sbjct: 481 LLVFEDWRADLRYCLFAPFIQGNQLKHLMVVIDAPLPGWLLDFPKRQKSGLLQASGWNPL 540
Query: 5579 RYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEMVSKRGEILK 5400
RYF +QTTLGFLDGVV+KLRELLGPV+NAAGYVWDL+IKAKDYAFSMLDEM+SKRGEIL+
Sbjct: 541 RYFARQTTLGFLDGVVAKLRELLGPVVNAAGYVWDLVIKAKDYAFSMLDEMISKRGEILR 600
Query: 5399 ALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 5220
ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL
Sbjct: 601 ALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 660
Query: 5219 KRSTKIWELVQKWDQPSEVKRXXXXXXXXXXXXXXEKEEWLRELMASPHSIPECVIDLTH 5040
KRSTKIWELVQKWD+PSEVK EKEEWLRELMASPHS+PECVIDLTH
Sbjct: 661 KRSTKIWELVQKWDKPSEVKHIDEEIIDLLVEESPEKEEWLRELMASPHSVPECVIDLTH 720
Query: 5039 MKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 4860
MKDLLG +CSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL
Sbjct: 721 MKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 780
Query: 4859 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 4680
ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA
Sbjct: 781 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 840
Query: 4679 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQA 4500
TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRK PGAYITHFNNLLQSLDRALVECQQA
Sbjct: 841 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKAPGAYITHFNNLLQSLDRALVECQQA 900
Query: 4499 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 4320
LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK
Sbjct: 901 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 960
Query: 4319 NQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQA 4140
NQSAVLYDDFGAVSEGGHFDEAEIIR LEAKGNTCCTSDFVFITANQA
Sbjct: 961 NQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSDFVFITANQA 1020
Query: 4139 GLTPNAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 3960
GLTP+AVVHCK+AFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ
Sbjct: 1021 GLTPSAVVHCKRAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 1080
Query: 3959 FLQYTVNQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGD 3780
FLQY VNQS+QHFSEQVDLRDAPHTQ+FTAADQIAAEAEEG R AGI++PF MLKSLSGD
Sbjct: 1081 FLQYAVNQSQQHFSEQVDLRDAPHTQIFTAADQIAAEAEEGLRTAGIEIPFCMLKSLSGD 1140
Query: 3779 QLTYYSEERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDP 3600
QLTYYSEE MMEVTETL PE+ADI+RSRLDPG+ITQQLQ LLPKAAYVNLKNHFGLGTDP
Sbjct: 1141 QLTYYSEEEMMEVTETLAPEEADIVRSRLDPGVITQQLQALLPKAAYVNLKNHFGLGTDP 1200
Query: 3599 FEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVK 3420
FEQPNPYFNCSQRAKVIGRFL+PKVTEEQLEQ KRGF +AKELAQGACKAINDAPFLVK
Sbjct: 1201 FEQPNPYFNCSQRAKVIGRFLKPKVTEEQLEQRKRGFMVVAKELAQGACKAINDAPFLVK 1260
Query: 3419 LLLGFGALYFVGLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXXXXXXXXXXX 3240
LLLGFGALYFVG PLLSWL++LYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1261 LLLGFGALYFVGAPLLSWLRNLYTAPCLLTFTTLGAMKASGSLSSSQDQETRRTASGRER 1320
Query: 3239 XRYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 3060
RYLLEASGPGAVEAKAQDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV
Sbjct: 1321 RRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 1380
Query: 3059 WLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLS 2880
WLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTF SFPVLKLEKWLLS
Sbjct: 1381 WLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFASFPVLKLEKWLLS 1440
Query: 2879 SHDPFMAGSGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 2700
SHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC
Sbjct: 1441 SHDPFMAGSGWFMEMLFQRNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 1500
Query: 2699 DDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITK 2520
DDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSLITK
Sbjct: 1501 DDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLITK 1560
Query: 2519 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIK 2340
EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL PS APRQAT+SEIK
Sbjct: 1561 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLTPSDAPRQATSSEIK 1620
Query: 2339 KSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEE 2160
KSSISADLE LTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAADMSPVTEEEE
Sbjct: 1621 KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAADMSPVTEEEE 1680
Query: 2159 KIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 1980
K+W+LTWDSIFDLPGGI KCHLL+EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE
Sbjct: 1681 KVWNLTWDSIFDLPGGIAGKCHLLTEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 1740
Query: 1979 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDV 1800
AGKERFLLGLPGCYTLNRDLPMYQRILDMDELC TTIPCIVGLDTAKDERLPLSKIYQDV
Sbjct: 1741 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCKTTIPCIVGLDTAKDERLPLSKIYQDV 1800
Query: 1799 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1620
KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN
Sbjct: 1801 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1860
Query: 1619 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSG 1440
WFNGDYSRFDGVTPRCLL+EI+RRIT LYND+QGDRRLHLMLAATTRLGVAGIGLYRVSG
Sbjct: 1861 WFNGDYSRFDGVTPRCLLVEISRRITALYNDNQGDRRLHLMLAATTRLGVAGIGLYRVSG 1920
Query: 1439 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASE 1260
GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVK+IAA++
Sbjct: 1921 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKQIAAAD 1980
Query: 1259 FNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXX 1080
FNLKKLS FLA FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRYLAP
Sbjct: 1981 FNLKKLSLFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSL 2040
Query: 1079 XXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTY 900
LHWVRETNMSNA ATQNNVEGFLRELFHYGDK+LYCKWRRDLIDLCS+NRVPHPTTY
Sbjct: 2041 SESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSRNRVPHPTTY 2100
Query: 899 SFEELERSWLSGKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVV 720
SFEELERSWLSGK+VASIFEKEE EV+VIRDGASD+APGVHIVPVQQCLKWK E+PNVV
Sbjct: 2101 SFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPGVHIVPVQQCLKWKPDEIPNVV 2160
Query: 719 WCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHW 540
WCGPNCPNQLRNA+TCFQIQAPQGS+YPLRNTVR+ LKKVHQRGD+VYFTGALNQSLVHW
Sbjct: 2161 WCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRSFLKKVHQRGDKVYFTGALNQSLVHW 2220
Query: 539 VAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTVAAKGW 420
VAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2221 VAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2260
>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
gb|AAW63128.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
Length = 2227
Score = 3652 bits (9471), Expect = 0.0
Identities = 1789/2229 (80%), Positives = 1948/2229 (87%), Gaps = 20/2229 (0%)
Frame = -3
Query: 7046 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 6867
MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 6866 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 6687
RNL+VE DR + + L + D+E+ FMS+L F ++ + G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 6686 YVHQTIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 6513
Y+ + I++A GLDV +Y +Q + R FL DR DAE LT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 6512 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 6333
+FDYTGLGGD KYRFD D L++D S GL RFVSAGFTES + LT D+D MT
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238
Query: 6332 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 6204
QALSDEW EW+YFEED EE L E L+ ++ + ++ +
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 6203 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 6024
P+SP VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 6023 PVGSAYTETWFVDGCLPEPWFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 5844
P G+ YTETWF+DGCLP WF RG +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 5843 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 5664
DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 5663 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 5484
NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 5483 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 5304
VWDLIIKAKD+AF L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 5303 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXX 5124
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 5123 XXXEKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 4947
+KEEW+REL+ASPH +PECVIDLTHMKDLL ++C+ FK+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 4946 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGS 4767
SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG
Sbjct: 719 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778
Query: 4766 KSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 4587
KSEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779 KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838
Query: 4586 SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 4407
SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI
Sbjct: 839 SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898
Query: 4406 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXX 4227
DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 899 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPA 958
Query: 4226 XXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPNAVVHCKKAFENRRLILAEVTAVEGGR 4047
LEAKGNTCCTSDFVFITANQAGLTP+AV+HCKKAFENRRLILAEVTAVEGGR
Sbjct: 959 PLPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGR 1018
Query: 4046 YRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAA 3867
YRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQ+F AA
Sbjct: 1019 YRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAA 1078
Query: 3866 DQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDP 3687
DQIAAEAEEGF+ AGI +PF MLK + G +TYY EE+ E+T L+ DADII SRLDP
Sbjct: 1079 DQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDP 1138
Query: 3686 GIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLE 3507
+ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFL+PKVTE QLE
Sbjct: 1139 QMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLE 1198
Query: 3506 QHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTF 3327
KRGF + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+AP L+TF
Sbjct: 1199 TSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTF 1258
Query: 3326 ATLGTMKASGSLSSSQDQXXXXXXXXXXXXRYLLEASGPGAVEAKAQDVESELASLSKHL 3147
A LGTM+ASGSLSSSQDQ RYLLEASGPGA+EAK QDVE+ELASLSKHL
Sbjct: 1259 AALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHL 1318
Query: 3146 IGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQR 2967
+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGCYKVGSL+KTFPFTVNRKNC+FQR
Sbjct: 1319 VGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQR 1378
Query: 2966 LGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEAD 2787
+GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAGSGWFMEM+F+ NGVLEVAREEAD
Sbjct: 1379 IGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEAD 1438
Query: 2786 YTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGL 2607
YTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYRNDFFYVSQCGTPLVANYG+GKGL
Sbjct: 1439 YTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGL 1498
Query: 2606 KIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGE 2427
KIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASLLLG+IKHPLETDRIQASGCLSG+
Sbjct: 1499 KIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGD 1558
Query: 2426 EFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLH 2247
EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII NRDTRL
Sbjct: 1559 EFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLK 1618
Query: 2246 DRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLN 2067
DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIFDLPGGI+ KCHLLSEDENLN
Sbjct: 1619 DRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLN 1678
Query: 2066 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE 1887
GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQRILD+D
Sbjct: 1679 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDA 1738
Query: 1886 LCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1707
L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH
Sbjct: 1739 LSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1798
Query: 1706 NVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND 1527
N IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RIT LY D
Sbjct: 1799 NCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGD 1858
Query: 1526 DQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 1347
+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSWEHMMAS
Sbjct: 1859 EHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS 1918
Query: 1346 SSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEF 1167
SSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+KEILPEF
Sbjct: 1919 SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEF 1978
Query: 1166 NPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFH 987
NPPEKCDFLKRCFKARGDRYLAP LHWVRETNM+NA ATQNNVEGFLRELFH
Sbjct: 1979 NPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFH 2038
Query: 986 YGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVVVIRD 807
YGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEE E+VV++D
Sbjct: 2039 YGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKD 2098
Query: 806 GASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRN 627
ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLRNAN CF IQAPQGSRYPLR+
Sbjct: 2099 AASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRS 2158
Query: 626 TVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLL 447
TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRESF HS YM AYFGDND GLL
Sbjct: 2159 TVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLL 2218
Query: 446 ESTVAAKGW 420
E+ AAKGW
Sbjct: 2219 EAVTAAKGW 2227
>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
Length = 675
Score = 1226 bits (3171), Expect = 0.0
Identities = 592/675 (87%), Positives = 624/675 (92%)
Frame = -3
Query: 2444 GCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHN 2265
GCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII N
Sbjct: 1 GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60
Query: 2264 RDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLS 2085
RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIFDLPGGI+ KCHLLS
Sbjct: 61 RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120
Query: 2084 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 1905
EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180
Query: 1904 ILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 1725
ILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181 ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240
Query: 1724 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 1545
ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241 ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300
Query: 1544 TLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 1365
T LY D+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301 TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360
Query: 1364 EHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSK 1185
EHMMASSSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+K
Sbjct: 361 EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420
Query: 1184 EILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGF 1005
EILPEFNPPEKCDFLKRCFKARGDRYLAP LHWVRETNM+NA ATQNNVEGF
Sbjct: 421 EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480
Query: 1004 LRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEESE 825
LRELFHYGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEE E
Sbjct: 481 LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540
Query: 824 VVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGS 645
+VV++D ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLRNAN CF IQAPQGS
Sbjct: 541 IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600
Query: 644 RYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGD 465
RYPLR+TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRESF HS YM AYFGD
Sbjct: 601 RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660
Query: 464 NDAGLLESTVAAKGW 420
ND GLLE+ AAKGW
Sbjct: 661 NDKGLLEAVTAAKGW 675
>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
Length = 548
Score = 976 bits (2524), Expect = 0.0
Identities = 477/548 (87%), Positives = 506/548 (92%)
Frame = -3
Query: 4943 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSK 4764
GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60
Query: 4763 SEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 4584
SEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61 SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120
Query: 4583 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 4404
RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID
Sbjct: 121 RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180
Query: 4403 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXX 4224
DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 181 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAP 240
Query: 4223 XXXXXXXLEAKGNTCCTSDFVFITANQAGLTPNAVVHCKKAFENRRLILAEVTAVEGGRY 4044
LEAKGNTCCTSDFVFITANQAGLTP+AV+HCKKAFENRRLILAEVTAVEGGRY
Sbjct: 241 LPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRY 300
Query: 4043 RDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAAD 3864
RDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQ+F AAD
Sbjct: 301 RDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAAD 360
Query: 3863 QIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPG 3684
QIAAEAEEGF+ AGI +PF MLK + G +TYY EE+ E+T L+ DADII SRLDP
Sbjct: 361 QIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQ 420
Query: 3683 IITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQ 3504
+ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFL+PKVTE QLE
Sbjct: 421 MITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLET 480
Query: 3503 HKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFA 3324
KRGF + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+AP L+TFA
Sbjct: 481 SKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFA 540
Query: 3323 TLGTMKAS 3300
LGTM+AS
Sbjct: 541 ALGTMRAS 548
>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
Length = 719
Score = 941 bits (2432), Expect = 0.0
Identities = 466/721 (64%), Positives = 549/721 (76%), Gaps = 20/721 (2%)
Frame = -3
Query: 7046 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 6867
MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 6866 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 6687
RNL+VE DR + + L + D+E+ FMS+L F ++ + G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 6686 YVHQTIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 6513
Y+ + I++A GLDV +Y +Q + R FL DR DAE LT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 6512 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 6333
+FDYTGLGGD KYRFD D L++D S GL RFVSAGFTES + LT D+D MT
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238
Query: 6332 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 6204
QALSDEW EW+YFEED EE L E L+ ++ + ++ +
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 6203 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 6024
P+SP VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 6023 PVGSAYTETWFVDGCLPEPWFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 5844
P G+ YTETWF+DGCLP WF RG +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 5843 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 5664
DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 5663 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 5484
NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 5483 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 5304
VWDLIIKAKD+AF L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 5303 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXX 5124
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 5123 XXXEKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 4947
+KEEW+REL+ASPH +PECVIDLTHMKDLL ++C+ FK+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 4946 S 4944
S
Sbjct: 719 S 719
>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
Length = 257
Score = 500 bits (1287), Expect = e-158
Identities = 238/257 (92%), Positives = 253/257 (98%)
Frame = -3
Query: 3215 GPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 3036
GPGA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1 GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60
Query: 3035 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAG 2856
YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAG
Sbjct: 61 YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120
Query: 2855 SGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 2676
SGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121 SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180
Query: 2675 NDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASL 2496
NDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASL
Sbjct: 181 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240
Query: 2495 LLGEIKHPLETDRIQAS 2445
LLG+IKHPLETDRIQAS
Sbjct: 241 LLGDIKHPLETDRIQAS 257
>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
dbj|BAA90870.1| 235K polyprotein [Apple latent spherical virus]
Length = 2079
Score = 353 bits (906), Expect = 3e-94
Identities = 386/1385 (27%), Positives = 594/1385 (42%), Gaps = 90/1385 (6%)
Frame = -3
Query: 4724 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKA----DRLILQMDSRKVPGAYIT 4557
DF W V T S+ L P +RL+ +R D+ + K P +T
Sbjct: 605 DFLEWAKRVERYAGDTYDSMILNPADRLRIIRELVDQQVGFQKAFFNPRIASKAPRLMLT 664
Query: 4556 HFNNLLQSLDRALVECQQALS----VGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLD 4392
F Q L L +C ALS R P I LY ++ GKS+ L + +LD
Sbjct: 665 EF----QRLSTMLRDCHSALSRAALFDMQRVPPFWIHLYSENGGTGKSMAMMPLGNYLLD 720
Query: 4391 SLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXX 4212
S++ +T R +RN + F + Y +Q L D+FGA + + DE ++
Sbjct: 721 SIEEPKTHRFVTRNVASRFLNGYLHQPCFLMDEFGAAPKTDYMDEVTMLDLVSPNPLTLN 780
Query: 4211 XXXLEAKGNTCCTSDFVFITANQAGLTPNAVVHCK-KAFENRRLILAEVTAVEGGRYRDR 4035
L K N TS + TAN+ P+ + F RR ILAEV +G Y
Sbjct: 781 MAALGDK-NIMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRHILAEVVLAQGKPYFHE 839
Query: 4034 YRFTLHQKNEPYSRDD--------------RFQVMNYEQFLQYTVNQSKQHFSEQVDLRD 3897
+ + + D F + EQF+ + +NQ EQ +
Sbjct: 840 FILLKARTEQKIYLDQALREVASPIHLSPAEFYAVCAEQFVNF-LNQQGNALIEQQGVSY 898
Query: 3896 APHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEE-----RMMEVTET 3732
D + + F+ I+ T +Q + +E R E
Sbjct: 899 VRSDDFSFLKDYLQYKMGLDFQQCEIERIVTDYSLSIKNQTIFPAEHEHIFSRWRAELEA 958
Query: 3731 LTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKV 3552
L+ + + + LD + + L+ + N N P+E Y C + K
Sbjct: 959 LSLSE---LITMLDKHVTETFVYTLIKE----NHSNVVMSNLTPYECLI-YSFCKDKYKK 1010
Query: 3551 IGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLL 3372
+ EE+++Q +A+ L+ A +N P V L+L A VG L+
Sbjct: 1011 ETDATFSSLPEEEVKQ-----PWLAEFLSFTARLCLN-VPKWVTLVLALCAFCLVGYVLI 1064
Query: 3371 SWLKSLYTAPC----LLTFATLGTMKASGS-----------------LSSSQDQXXXXXX 3255
+ L+T C +L F++L S +S Q
Sbjct: 1065 KFAIGLFTGACTIFSVLAFSSLSAQGPEDSPGFENARKTAGVKVHFVKTSFQPSDWKGIN 1124
Query: 3254 XXXXXXRYLLEASGPGAVEAKAQ--DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTR 3081
+ A A+ Q D + +L KH + + ++ Y IALG
Sbjct: 1125 VKPSGFNWGDVADDDDAIPLWGQGPDQNQNVLNLLKHQVVLIA-EHSKVVYNAIALGNRN 1183
Query: 3080 VLMVYHVWLELQSGCYKV-GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVL 2904
L HVW + + Y + G +N +L +DLV+V P + F L
Sbjct: 1184 FLFTKHVWDLMPTCNYGLFGYAIAKNKIYINPNVRPAIQLKNRDLVVVQLPDSVPPFSAL 1243
Query: 2903 KLEKWLLS-SHDPFMAGSGWFM-EMLFRGNGVLEVAREEADYTLL---DTNDVYDAAFLK 2739
+ +L + + P +A + + E L+ V ++ ++ + L + D Y L
Sbjct: 1244 PKDIFLSNLAEAPKVANAALVVSEPLYEKRSVAQLQQKIYPFENLPQIHSRDTYSCGSLG 1303
Query: 2738 GVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQK 2559
+ C YT DT G C +PL++ G G+ + + +HV
Sbjct: 1304 SKPMPACYSYTF--DTFAGL---------CTSPLISMDG-GRCV-LLGLHVA-------G 1343
Query: 2558 DTIIAGSGSLITKEEYLEASLL----LGEIKHPLETDRIQASG--CLSGEEFFDAETVFP 2397
D G ++T E++ + + G + + T R ++ G CL G ++ + F
Sbjct: 1344 DKSKMGYAQIVTLEDFSDINFSEKVGQGPEQMYIPTARSESFGSVCLLG-KWTGPKPYFL 1402
Query: 2396 EGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIF 2226
E + T + I D+ TEPAI+ +D RL +++ D F
Sbjct: 1403 E---------NSSLTPSLIHDCIDIDM--------TTEPAILSKKDPRLQYTNNKDFDPF 1445
Query: 2225 KKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDN 2049
GM KY A +E+E++++ D +F ++P C LS D+ NG+ D+
Sbjct: 1446 LSGMGKYAVEAHSF----DEDEELFEDALDRVFSEIP---MFTCEDLSNDQVCNGIEDDD 1498
Query: 2048 EYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTL--NRDLPMYQRILDMDELCAT 1875
G+V+ T+EG+P R G GK G PG + + N L + +++ L
Sbjct: 1499 YAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGDWHIVPNSLLANELNVKELN-LSKN 1557
Query: 1874 TIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIP 1695
++G+D KDE++ SK+Y KTRLFTILP++YN LVRKYF SFV++LM LHN +P
Sbjct: 1558 IFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVP 1617
Query: 1694 TKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDD--- 1524
TKVGI+P+ +W+IL +H+KGTNWFNGDYSRFDG+TPR +L I +RI+ Y +
Sbjct: 1618 TKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSF 1677
Query: 1523 ---------QGD-RRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVR 1374
GD R LM +TR G+ L+ V+ GIPSGF LTVIVNSLVN F V
Sbjct: 1678 AITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVH 1737
Query: 1373 WSWEHMMAS---SSLF----FSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGF 1215
+++ + +S +L+ F V AV GDDNL+SV + FNL +S+ L + G
Sbjct: 1738 FAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGV 1797
Query: 1214 TLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNA 1035
TLK+G+DK++EIL F P EK DFLKR F +AP LHWVR+ + +A
Sbjct: 1798 TLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHIVAPLNTVNITERLHWVRK-GLGDA 1856
Query: 1034 VATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSV 855
AT N + L E +G ELY R I+ K + +++ +L+G S
Sbjct: 1857 DATLENCKSALFEALFHG--ELYYNDLRGKIEKACKVKGLPLIVPDYQDALSLFLTGGSY 1914
Query: 854 ASIFE 840
A +
Sbjct: 1915 AKAIQ 1919
>gb|AAZ76594.1| polyprotein, partial [Stocky prune virus]
Length = 795
Score = 321 bits (823), Expect = 2e-89
Identities = 220/609 (36%), Positives = 318/609 (52%), Gaps = 31/609 (5%)
Frame = -3
Query: 2675 NDFFYVSQCGTPLVANYG---RGKGLKIASIHVVHHFSATQKDTIIA-GSGSLITKEEYL 2508
+ + CG A G G G+ + ++H + ++ + G G+ +T+E+ +
Sbjct: 22 HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81
Query: 2507 EASLLLGEIKHPLETDRIQASGCLSGEE----FFDAETVFPEGLLEP-SGAPRQATTSEI 2343
+LL D + CL E + V G L+ S AP + +++
Sbjct: 82 GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132
Query: 2342 KKSSISADLEALTGEKRKTEPAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSPVT 2172
++S IS D+ L E T PAII N D R+ + D+F GM KYK +A V
Sbjct: 133 ERSLIS-DIVDLPCE---TVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188
Query: 2171 -EEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1995
+E++ + D IFD +SE+ L G+ + +V STSEG+P +L
Sbjct: 189 GSDEQQDFHDALDDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWILE 248
Query: 1994 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLS 1818
R +G GK L G+PGC++++ + +++ L +P ++G++ KDER+
Sbjct: 249 RPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRELELNLQQGVVPPLIGVECPKDERVARK 308
Query: 1817 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 1638
K+ KTRLFT+LP EYN LVR+YF FV++ M+ HN P KVGINP +WT L + +
Sbjct: 309 KVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVGINPQSIEWTNLYENL 368
Query: 1637 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR------RLHLMLAATTRL 1476
+KGTNWFNGD+ RFDG+TPR +++++ RI LY DR R LML A+ R
Sbjct: 369 RSKGTNWFNGDFERFDGITPRDVMVQLVIRINKLYKRGDADRPLANKVRSLLMLMASDRY 428
Query: 1475 GVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASS-------SLFFSDCVE 1317
+AG LY+VS GIPSGF+LTVIVNSLVN F +R++W+ ++ +S V
Sbjct: 429 AIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVH 488
Query: 1316 LAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNP-PEKCDFL 1140
AV GDDNLVSV + +S +NL +SSFL + G LK+G K +E P F+P P CDFL
Sbjct: 489 FAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDFL 548
Query: 1139 KRCF-KARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE--LFHYGDKEL 969
KR F R LAP HWVR++ Q NV+G LRE F E
Sbjct: 549 KRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYEF 607
Query: 968 YCKWRRDLI 942
+ RR L+
Sbjct: 608 FHDMRRKLL 616
>ref|YP_009220374.1| polyprotein [Currant latent virus]
gb|ALT45950.1| polyprotein [Currant latent virus]
Length = 2124
Score = 335 bits (858), Expect = 2e-88
Identities = 281/828 (33%), Positives = 402/828 (48%), Gaps = 46/828 (5%)
Frame = -3
Query: 3185 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVG--SLTK 3012
+++ + +L KH + F + D Y IALGG L+ HV+ + Y + ++TK
Sbjct: 1203 ELDQSVINLLKHQVVFIN-DMTKVVYNAIALGGRNFLITKHVFDLMPVANYSLYGYAITK 1261
Query: 3011 TFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGWFM--E 2838
+ NR + Q L +DLVIV+ P T F L + +L + + + + E
Sbjct: 1262 PKIWIDNRVRPKIQ-LKDRDLVIVEMPLTVPCFSSLPKDIFLKNMQEAPKQVNAVLVIAE 1320
Query: 2837 MLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2667
+ G V ++ ++ +T L D Y L + + C YT DT
Sbjct: 1321 PNYEGKSVAKLVQKFQPFTNLPQVHAKDTYSCGSLGSLRMPPCYSYTF--DT-------- 1370
Query: 2666 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLG 2487
Y C +PL+ G G+ + + +HVV + S T G ++T +++ E L
Sbjct: 1371 -YPGLCTSPLICMSG-GRCI-LLGLHVVGNMSKT-------GFSQIVTLDDFSEVPL--- 1417
Query: 2486 EIKHPLETDRIQASGCLSGE--EFFDAETVFPE--GLLEPSG-----APRQATTSEIKKS 2334
SG L GE E + T E G + G AP + + S
Sbjct: 1418 ------------QSGTLVGEGPECYCIPTASSECYGSVTKLGKWTGPAPYFLEKTSLVPS 1465
Query: 2333 SISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEE 2163
IS D++ + TEPAI+ +D RL +D + FK GMLKY A + E+
Sbjct: 1466 MISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYAVEAHGFN----ED 1517
Query: 2162 EKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 1986
E+ ++ D +F ++P + C L++DE NG+ D +V+ TSEG+P R
Sbjct: 1518 EEFFEDALDRVFSEIP---DFNCQELADDEVCNGIEDDPYAEPLVMQTSEGYPFCTQRPA 1574
Query: 1985 GEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERLPLSKIY 1809
G GK G PG + + ++ + M+ L ++G+D KDE++ SK+Y
Sbjct: 1575 GATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGIDFPKDEKVDKSKVY 1634
Query: 1808 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 1629
KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL +W IL + AK
Sbjct: 1635 IKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLSNEWGILQFALSAK 1694
Query: 1628 GTNWFNGDYSRFDGVTPRCLLIEIARRI---------------TLLYNDDQGDRRLHLML 1494
G NWFNGDYSRFDG+TPR +L+ I +RI TL N D R LM
Sbjct: 1695 GENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSINGDLA--RSLLMD 1752
Query: 1493 AATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSS-------LF 1335
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ + S+
Sbjct: 1753 MASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYMSICKKSNDMDLYPLYS 1812
Query: 1334 FSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPE 1155
F V AV GDDN+VSV ++ +FNL L+ FL D+G TLK+G+DK +EIL F P
Sbjct: 1813 FKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGADKDEEILSPFYPIS 1872
Query: 1154 KCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDK 975
K DFLKR F ++P LHWVR+ M+ A N + E +G
Sbjct: 1873 KVDFLKRKFTVLQGHVVSPLNRINITERLHWVRK-GMTEVDAIVENCQSAAFEAVFHG-- 1929
Query: 974 ELYCKWRRDLI-DLCSKN--RVPHPTTYSFEELERSWLSGKSVASIFE 840
E Y K +I C+KN V PT F++ LSG S A+ +
Sbjct: 1930 EHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAIQ 1974
>gb|AHN52254.1| polyprotein, partial [Currant latent virus]
Length = 721
Score = 306 bits (783), Expect = 8e-85
Identities = 212/541 (39%), Positives = 288/541 (53%), Gaps = 30/541 (5%)
Frame = -3
Query: 2372 APRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 2202
AP + + S IS D++ + TEPAI+ +D RL +D + FK GMLKY
Sbjct: 50 APYFLEKTSLVPSMISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYA 105
Query: 2201 AVAADMSPVTEEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVS 2025
A + E+E+ ++ D +F ++P + C L++DE NG+ D +V+
Sbjct: 106 VEAHGFN----EDEEFFEDALDRVFSEIP---DFNCQELADDEVCNGIEDDPYAEPLVMQ 158
Query: 2024 TSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLD 1848
TSEG+P R G GK G PG + + ++ + M+ L ++G+D
Sbjct: 159 TSEGYPFCTQRPAGATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGID 218
Query: 1847 TAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLG 1668
KDE++ SK+Y KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL
Sbjct: 219 FPKDEKVDKSKVYIKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLS 278
Query: 1667 YDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI---------------TLLY 1533
+W IL + AKG NWFNGDYSRFDG+TPR +L+ I +RI TL
Sbjct: 279 NEWGILQFALSAKGENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSI 338
Query: 1532 NDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMM 1353
N D R LM A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ +
Sbjct: 339 NGDLA--RSLLMDMASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYRSIC 396
Query: 1352 ASSS-------LFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSD 1194
S+ F V AV GDDN+VSV ++ +FNL L+ FL D+G TLK+G+D
Sbjct: 397 KKSNDMDLYPLYSFKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGAD 456
Query: 1193 KSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNV 1014
K +EIL F P K DFLKR F ++P LHWVR+ M+ A N
Sbjct: 457 KDEEILSPFYPISKVDFLKRKFTVLQGHVVSPLNRINITERLHWVRK-GMTEVDAIVENC 515
Query: 1013 EGFLRELFHYGDKELYCKWRRDLI-DLCSKN--RVPHPTTYSFEELERSWLSGKSVASIF 843
+ E +G E Y K +I C+KN V PT F++ LSG S A+
Sbjct: 516 QSAAFEAVFHG--EHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAI 570
Query: 842 E 840
+
Sbjct: 571 Q 571
>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
Length = 709
Score = 303 bits (775), Expect = 7e-84
Identities = 200/509 (39%), Positives = 283/509 (55%), Gaps = 26/509 (5%)
Frame = -3
Query: 2288 TEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF-DL 2121
TEPAI+ +D RL +++ D F GM KY A +E+E++++ D +F ++
Sbjct: 52 TEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEI 107
Query: 2120 PGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGC 1941
P C LS D+ NG+ D+ G+V+ T+EG+P R G GK G PG
Sbjct: 108 P---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGD 164
Query: 1940 YTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1767
+ + N L + +++ L ++G+D KDE++ SK+Y KTRLFTILP++
Sbjct: 165 WHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVD 223
Query: 1766 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1587
YN LVRKYF SFV++LM LHN +PTKVGI+P+ +W+IL +H+KGTNWFNGDYSRFDG
Sbjct: 224 YNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDG 283
Query: 1586 VTPRCLLIEIARRITLLYNDD------------QGD-RRLHLMLAATTRLGVAGIGLYRV 1446
+TPR +L I +RI+ Y + GD R LM +TR G+ L+ V
Sbjct: 284 ITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYV 343
Query: 1445 SGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---SSLF----FSDCVELAVVGDDNLV 1287
+ GIPSGF LTVIVNSLVN F V +++ + +S +L+ F V AV GDDNL+
Sbjct: 344 TSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLI 403
Query: 1286 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 1107
SV + FNL +S+ L + G TLK+G+DK++EIL F P EK DFLKR F
Sbjct: 404 SVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHI 463
Query: 1106 LAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 927
+AP LHWVR+ + +A AT N + L E +G ELY R I+ K
Sbjct: 464 VAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGKIEKACK 520
Query: 926 NRVPHPTTYSFEELERSWLSGKSVASIFE 840
+ +++ +L+G S A +
Sbjct: 521 VKGLPLIVPDYQDALSLFLTGGSYAKAIQ 549
>gb|ANC51274.1| polyprotein [Cherry rasp leaf virus]
Length = 2230
Score = 317 bits (812), Expect = 5e-83
Identities = 251/772 (32%), Positives = 375/772 (48%), Gaps = 34/772 (4%)
Frame = -3
Query: 3200 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--V 3027
E ++ L +L KH + + + Y IALGG L+ HVW +L C
Sbjct: 1298 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1355
Query: 3026 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 2847
G ++ + +L +DLVIV P + F L + +L + +
Sbjct: 1356 GYAVAKDKIFISPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1415
Query: 2846 FM--EMLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTG 2682
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1416 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1470
Query: 2681 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEA 2502
Y C +PL+A G G+ + I +HVV D G ++T +++ +
Sbjct: 1471 ------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFSDI 1515
Query: 2501 SLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISA 2322
+L +D++ G E + + G + GA ++K+S+
Sbjct: 1516 AL----------SDKV---GQGPEEMYIPTKNSECFGAVTKLGAWTGPKPYFLEKTSLIP 1562
Query: 2321 DLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEEKI 2154
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+ ++
Sbjct: 1563 SLISTSIDVERTTEPAILSQRDKRLKDSTNPEFDVFLEGMKKYAVEAHSL----DEDLEV 1618
Query: 2153 WDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 1977
++ D +F ++P + C LS D+ NG+ D G+V+ T+EG+P R G +
Sbjct: 1619 FEDALDRVFSEIP---DHACEDLSNDQVCNGIEDDPYAEGIVMQTAEGYPFCTQRPAGAS 1675
Query: 1976 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 1800
GK G PG + + D + + + L ++G+D KDE++ SK+Y
Sbjct: 1676 GKSWLFAGAPGDWHIVPDSLLANEMHKKEVALSKGLFEPLIGIDFPKDEKVDSSKVYIKP 1735
Query: 1799 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1620
KTRLFTILP++YN LVRKYF SFV+ +M HN IP KVGI+ L +W+IL ++ +KGTN
Sbjct: 1736 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1795
Query: 1619 WFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------DQGDRRLHLMLAATTR 1479
WFNGDYSRFDG+TPR +L I +RI LY++ + R LM A+TR
Sbjct: 1796 WFNGDYSRFDGITPRNVLQGIVKRINKLYSNKNSFAITDPNLCINSDLARSLLMDMASTR 1855
Query: 1478 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSDCV 1320
G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F V
Sbjct: 1856 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1915
Query: 1319 ELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFL 1140
A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P EK DFL
Sbjct: 1916 SYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1975
Query: 1139 KRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 987
KR F +AP LHW+R+ + A AT N E LFH
Sbjct: 1976 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2026
Score = 75.5 bits (184), Expect = 2e-09
Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 6/230 (2%)
Frame = -3
Query: 4724 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 4557
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 761 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 820
Query: 4556 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 4380
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 821 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 880
Query: 4379 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXL 4200
+T R +RN + F + Y++Q L D+FGA + + DE ++ +
Sbjct: 881 PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 940
Query: 4199 EAKGNTCCTSDFVFITANQAGLTPNAVVHCK-KAFENRRLILAEVTAVEG 4053
K NT TS + TAN+ P+ + F RR ILAEV V G
Sbjct: 941 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 989
>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
Length = 707
Score = 296 bits (758), Expect = 1e-81
Identities = 189/478 (39%), Positives = 263/478 (55%), Gaps = 26/478 (5%)
Frame = -3
Query: 2342 KKSSISADLEALTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVT 2172
K S I + + +R TEPAI+ RD RL D D+F +GM KY A +
Sbjct: 34 KTSLIPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL---- 89
Query: 2171 EEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1995
+E+ ++++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P
Sbjct: 90 DEDLEVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQ 146
Query: 1994 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLS 1818
R G +GK G PG + + + + + + + ++G+D KDE++ S
Sbjct: 147 RPAGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSS 206
Query: 1817 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 1638
K+Y KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++
Sbjct: 207 KVYIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQL 266
Query: 1637 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LM 1497
+KGTNWFNGDYSRFDG+TPR +L I +RI YN+ D L L
Sbjct: 267 RSKGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLT 326
Query: 1496 LAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL------- 1338
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L
Sbjct: 327 DMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLH 386
Query: 1337 FFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPP 1158
F V A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P
Sbjct: 387 SFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPL 446
Query: 1157 EKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 987
EK DFLKR F +AP LHW+R+ + A AT N E LFH
Sbjct: 447 EKVDFLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 503
>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
Length = 2235
Score = 312 bits (800), Expect = 1e-81
Identities = 250/772 (32%), Positives = 371/772 (48%), Gaps = 34/772 (4%)
Frame = -3
Query: 3200 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCY--KV 3027
E ++ L +L KH + + + Y IALGG L+ HVW +L C
Sbjct: 1303 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1360
Query: 3026 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 2847
G + + +L +DLVIV P + F L + +L + +
Sbjct: 1361 GYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1420
Query: 2846 FM--EMLFRGNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTG 2682
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1421 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1475
Query: 2681 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEA 2502
Y C +PL+A G G+ + I +HVV D G ++T +++ +
Sbjct: 1476 ------YAGLCTSPLIAQEG-GRCI-ILGLHVV-------GDRSKMGYAQIVTLDDFSDV 1520
Query: 2501 SLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISA 2322
+L +D++ G E + + G + GA ++K+++
Sbjct: 1521 AL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTTLIP 1567
Query: 2321 DLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEEKI 2154
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+ ++
Sbjct: 1568 SLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEV 1623
Query: 2153 WDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 1977
++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P R G +
Sbjct: 1624 FEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGAS 1680
Query: 1976 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 1800
GK G PG + + + + + L ++G+D KDE++ SK+Y
Sbjct: 1681 GKSWLFAGAPGDWHIVPGSLLANEMHKKEVALSRGLFEPLIGIDFPKDEKVDSSKVYIKP 1740
Query: 1799 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1620
KTRLFTILP++YN LVRKYF SFV+ +M HN IP KVGI+ L +W+IL ++ +KGTN
Sbjct: 1741 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1800
Query: 1619 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAATTR 1479
WFNGDYSRFDG+TPR +L I +RI YN+ D L LM A+TR
Sbjct: 1801 WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDMASTR 1860
Query: 1478 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSDCV 1320
G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F V
Sbjct: 1861 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1920
Query: 1319 ELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFL 1140
A GDDNLVSV ++ FNL K++ LA+ G TLK+G+DK++EIL F P EK DFL
Sbjct: 1921 AYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1980
Query: 1139 KRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 987
KR F +AP LHW+R+ + A AT N E LFH
Sbjct: 1981 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2031
Score = 73.2 bits (178), Expect = 1e-08
Identities = 65/230 (28%), Positives = 99/230 (43%), Gaps = 6/230 (2%)
Frame = -3
Query: 4724 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 4557
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 766 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 825
Query: 4556 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 4380
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 826 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNYMLDAIGE 885
Query: 4379 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXL 4200
+T R +RN + F + Y+++ L D+FGA + + DE ++ +
Sbjct: 886 PKTCRFVTRNVASKFLNGYQHRPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 945
Query: 4199 EAKGNTCCTSDFVFITANQAGLTPNAVVHCK-KAFENRRLILAEVTAVEG 4053
K NT TS + TAN+ P+ + F RR ILAEV V G
Sbjct: 946 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 994
>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B;
AltName: Full=P1; Contains: RecName: Full=Protease
cofactor; Contains: RecName: Full=Putative helicase;
AltName: Full=Membrane-binding protein; AltName:
Full=NTP-binding protein; Short=NTB; Contains: RecName:
Full=Viral genome-linked protein; AltName: Full=VPg;
Contains: RecName: Full=Picornain 3C-like protease;
Short=3C-like protease; Contains: RecName:
Full=RNA-directed RNA polymerase
emb|CAF21713.1| polyprotein [Cherry rasp leaf virus]
Length = 2250
Score = 307 bits (787), Expect = 5e-80
Identities = 249/774 (32%), Positives = 372/774 (48%), Gaps = 36/774 (4%)
Frame = -3
Query: 3200 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC----Y 3033
E ++ L +L KH + + + Y IALGG L+ HVW +L C Y
Sbjct: 1318 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1375
Query: 3032 KVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGS 2853
+ + C +L +DLVIV P + F L + +L + +
Sbjct: 1376 GYAVAKDRIFISPRIRPCA--QLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTAN 1433
Query: 2852 GWFM--EMLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTG 2688
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1434 ACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET- 1490
Query: 2687 TGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYL 2508
Y C +PL+A G G+ + I +HVV D G ++T +++
Sbjct: 1491 --------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFS 1533
Query: 2507 EASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSI 2328
+ +L +D++ G E + + G + GA ++K+S+
Sbjct: 1534 DVAL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTSL 1580
Query: 2327 SADLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEE 2160
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+
Sbjct: 1581 IPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDL 1636
Query: 2159 KIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNG 1983
++++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P R G
Sbjct: 1637 EVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAG 1693
Query: 1982 EAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKIYQ 1806
+GK G PG + + + + + + + ++G+D KDE++ SK+Y
Sbjct: 1694 ASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVYI 1753
Query: 1805 DVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKG 1626
KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++ +KG
Sbjct: 1754 KPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKG 1813
Query: 1625 TNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAAT 1485
TNWFNGDYSRFDG+TPR +L I +RI YN+ D L L A+
Sbjct: 1814 TNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMAS 1873
Query: 1484 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSD 1326
TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F
Sbjct: 1874 TRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQ 1933
Query: 1325 CVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCD 1146
V A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P EK D
Sbjct: 1934 MVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVD 1993
Query: 1145 FLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 987
FLKR F +AP LHW+R+ + A AT N E LFH
Sbjct: 1994 FLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2046
Score = 75.5 bits (184), Expect = 2e-09
Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 6/230 (2%)
Frame = -3
Query: 4724 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 4557
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 781 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 840
Query: 4556 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 4380
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 841 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 900
Query: 4379 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXL 4200
+T R +RN + F + Y++Q L D+FGA + + DE ++ +
Sbjct: 901 PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 960
Query: 4199 EAKGNTCCTSDFVFITANQAGLTPNAVVHCK-KAFENRRLILAEVTAVEG 4053
K NT TS + TAN+ P+ + F RR ILAEV V G
Sbjct: 961 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 1009
>ref|YP_007697622.1| polyprotein [Arracacha virus B]
gb|AFI74271.1| polyprotein [Arracacha virus B]
Length = 2314
Score = 303 bits (777), Expect = 8e-79
Identities = 257/793 (32%), Positives = 378/793 (47%), Gaps = 39/793 (4%)
Frame = -3
Query: 3176 SELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--VGSLTKTFP 3003
SEL S KH+ +I + Y + + G + L V HV+ + G Y+ VG
Sbjct: 1231 SELVSFLKHVAVMRNI-VTEQDYHLLFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288
Query: 3002 FTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDP--------FMAGSGW 2847
F NR + + L KDL IV T P L K LL + F S
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVP--PFAPLAKRLLFDEEEKLPRQALGFFCHSEP 1346
Query: 2846 FMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2667
++E L R +G+ ++ + T+ + D+ + L K +Y + G
Sbjct: 1347 YVE-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF------ 1398
Query: 2666 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKE-EYLEASLLL 2490
CG L+ G+KI +H + K +I + ++ ++ E S +
Sbjct: 1399 -----CGDVLLQVCS--SGVKILGMH-----TTAGKQSIWRYANTVTLQDIEGAYPSEWV 1446
Query: 2489 GEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEA 2310
GE + L C +GE A EGL P T + + S IS+DL+
Sbjct: 1447 GE-EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKE 1496
Query: 2309 LTGEKRKT--EPAIIHNRDTRLHD---RHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDL 2145
+ PAI+H+RD R+ + D FK GMLKY A E+ + D
Sbjct: 1497 DDDNHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAGPFDEADEDFQDALDD 1556
Query: 2144 TWDSIFDLPGGIERK-------CHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 1986
+ I DL E + C +L+E++ LNG + +V T+EG+P R
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616
Query: 1985 GEAGKERFLLGLPGCYTLNRDLPMYQRILDM-DELCATTIPCIVGLDTAKDERLPLSKIY 1809
G++GK L G+PG ++L ++ P+ I + D L ++G+D KDE++ +K+
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEVFEPLIGIDFPKDEKVMRAKVE 1676
Query: 1808 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 1629
K RLFTILP YN +VR+++ FVA LM+ HN P KVG+N +W L ++ A
Sbjct: 1677 VKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNTSSLEWQHLYDQLSAV 1736
Query: 1628 GTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGD-----RRLHLMLA-------AT 1485
G NWFNGDYSRFDG+TPRC+L +A RI+ Y D+ +++ +A A
Sbjct: 1737 GFNWFNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVSKKKIRTSVAHSLLLDMAN 1796
Query: 1484 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA---SSSLFFSDCVEL 1314
+R G+AG+G+Y+VS GIPSGF LTVIVNSLVN F + +++ +M+ S +F+ V
Sbjct: 1797 SRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHFWFTKNVAF 1856
Query: 1313 AVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKR 1134
AV GDDNLVSV E + +NLK ++ FL FG TLK+G++K +EIL F P E DFLKR
Sbjct: 1857 AVYGDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKR 1916
Query: 1133 CFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWR 954
F L LHWVR+ A +N L E +G E Y R
Sbjct: 1917 TFVPFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIR 1974
Query: 953 RDLIDLCSKNRVP 915
L+ + K ++P
Sbjct: 1975 SKLVRVLGKRKLP 1987
Score = 63.9 bits (154), Expect = 7e-06
Identities = 63/240 (26%), Positives = 94/240 (39%), Gaps = 4/240 (1%)
Frame = -3
Query: 4733 VGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKD--KADRLILQMDSRKVPGAYI 4560
V DFQ W V + T + + P +RL+ LR D K IL M P
Sbjct: 669 VDKDFQTWSEGVRDYAFETWKAAEIPPIQRLEILRGLDDTRKDFEKILMMPGVNPPEYLR 728
Query: 4559 THFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGD-SHVGKSVCSQYLIDDVLDSLD 4383
F+ +L + E +A R P I+LY GKS C+ L + +LDS +
Sbjct: 729 RCFDACSTALRERIAELSRAAMFDISRIPPFWIYLYSARGGTGKSTCAIPLANKILDSAN 788
Query: 4382 YAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXX 4203
+ R+ +RN + S+ + Y +Q ++ D+FGA E + II
Sbjct: 789 EPKGARICTRNAASSYLNGYAHQPCLIMDEFGAQGEHHATPDERIILDYVSATPMIPNMA 848
Query: 4202 LEAKGNTCCTSDFVFITANQAGLTPNA-VVHCKKAFENRRLILAEVTAVEGGRYRDRYRF 4026
S + T+N P + + K F RR I AEV A G ++ F
Sbjct: 849 AVNDKTIMFNSKLIISTSNFPNGNPKVDLGNNKTGFLRRRKIFAEVAAPLPGEQFPQFSF 908
>gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus]
Length = 173
Score = 233 bits (594), Expect(2) = 1e-70
Identities = 107/125 (85%), Positives = 111/125 (88%)
Frame = -3
Query: 794 VAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRN 615
VAP VHIVPVQ CLKWK EVP VVWCGPNCPNQL+N N CF IQAPQGSRYPLRNTV+N
Sbjct: 3 VAPNVHIVPVQTCLKWKPSEVPTVVWCGPNCPNQLKNTNGCFFIQAPQGSRYPLRNTVKN 62
Query: 614 LLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTV 435
LLK+VHQR DEVYFTGALNQSLVHWVAAFYASMYRESF HS YM AYFGDNDAGLLE+
Sbjct: 63 LLKRVHQRSDEVYFTGALNQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDAGLLEAVT 122
Query: 434 AAKGW 420
AAKGW
Sbjct: 123 AAKGW 127
Score = 67.4 bits (163), Expect(2) = 1e-70
Identities = 30/39 (76%), Positives = 31/39 (79%)
Frame = -1
Query: 412 FFS*AFLLENIPGPDGH*LGKPVNFVYHYHGFTWFIYFS 296
FFS FL ENIPGPDGH LGKPVNFV HYHG TWF F+
Sbjct: 132 FFSYVFLKENIPGPDGHLLGKPVNFVCHYHGTTWFRVFN 170
>ref|YP_009389536.1| polyprotein [Lettuce necrotic leaf curl virus]
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
Length = 2223
Score = 273 bits (698), Expect = 1e-69
Identities = 199/572 (34%), Positives = 298/572 (52%), Gaps = 27/572 (4%)
Frame = -3
Query: 2345 IKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEE 2166
++KS I + + G TEP+I+ + D R D + KG+ K+ A T E
Sbjct: 1165 LRKSEIFDAMTKVLGP-HSTEPSILTHHDDRPEVEGFDPYVKGVEKFNETACCFDHETVE 1223
Query: 2165 ---EEKIWDLTWDSI-FDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVL 1998
+ DL + + D+PGG K + SE E LNG+ G+ Y M +ST+ G+P L
Sbjct: 1224 VALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDMSTACGYPYTL 1280
Query: 1997 NRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERL 1827
+ E GK + +L G PG Y L+R+ P++ +++DE + I IV + AKDERL
Sbjct: 1281 S----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDESIRQGRITEIVSCECAKDERL 1336
Query: 1826 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1647
PL KIYQ KTRLFTILP YN LVRKYF F A LM+ HN +P KVGINP G +WT+L
Sbjct: 1337 PLEKIYQRPKTRLFTILPFHYNMLVRKYFLDFSASLMRAHNTLPCKVGINPSGLEWTVLA 1396
Query: 1646 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR----RLHLMLAATTR 1479
K F+ DYS FDG P + + Y D G R L++ A+
Sbjct: 1397 KNFSETADVGFSADYSSFDGRAPVFIFQRFCDIVDKYYGDLPGSENSLARHALLMMASNH 1456
Query: 1478 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHM----------MASSSLFFS 1329
L + G L+RV GG+PSGF+LTV+ NSL+N F +R+++E + M + FS
Sbjct: 1457 LTLCGDKLFRVVGGMPSGFSLTVLFNSLLNEFYMRYAFERLLHHPRNITRTMGMTQRTFS 1516
Query: 1328 DCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILP-EFNPPEK 1152
+ + +A+ GDDNLV+V + ++L ++ L +K+G DK++++ +F P +
Sbjct: 1517 E-LFIAIYGDDNLVAV-PLHLRWYSLPAIAEELQKVNVVIKNGLDKNQDVAQVQFQPLGE 1574
Query: 1151 CDFLKRCFKARG-DRYLAPXXXXXXXXXLHWVRETNMSNAV-ATQNNVEGFLRELFHYGD 978
FL R F+ Y AP L W+R T + + A N+EG LRE + +G
Sbjct: 1575 LTFLSRGFRKHVLGYYQAPLKWVSIVEPLRWIRPTPENPPIDALMQNIEGSLREAYMHG- 1633
Query: 977 KELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSV---ASIFEKEESEVVVIRD 807
K ++ +R ++ + ++ R+P T FEELER W+S + ++ E E E++ +
Sbjct: 1634 KLVFQDFRDKVVQVLNERRIPFKTLPFFEELEREWVSEVTAGTRGALVEPSEHELLSL-- 1691
Query: 806 GASDVAPGVHIVPVQQCLKWKTGEVPNVVWCG 711
P V + V+Q + VP V +CG
Sbjct: 1692 ------PTVEQLTVEQYSREINEFVPGVHFCG 1717
Score = 92.8 bits (229), Expect = 1e-14
Identities = 92/359 (25%), Positives = 145/359 (40%), Gaps = 16/359 (4%)
Frame = -3
Query: 4622 KDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDS 4443
KDKA + V FN + LD+ L + Q VG++R P C+ LYG
Sbjct: 344 KDKAKYFEAEFVKFPVSPFVTGRFNVAVSKLDKLLTDAQSHKGVGQFRDEPFCLQLYGKP 403
Query: 4442 HVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHF 4263
GK++ ++I+D+L+ L T R++S + D +WS Y +Q AVL DDFG + + +
Sbjct: 404 GCGKTMSIGFIIEDLLNRLGEPTTNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDAANQ 463
Query: 4262 DEA--EIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPNAVVHCKKAFENR 4089
++ + I +E KG T TS ++F+T+NQA V A + R
Sbjct: 464 NDGVKDFIFMKSSAPMSLSMAAVEEKG-TQFTSRYIFLTSNQATPPRTVGVMDLGAIQRR 522
Query: 4088 RLILAEV-----------TAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTV 3942
R +L EV T V+ FT+ +P+ R D Y + L
Sbjct: 523 RNLLIEVERHGPIDETCETPVQ------NITFTVRDPLDPHRRIDGLSDKTYLEILDIIE 576
Query: 3941 NQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYS 3762
+ H+++ L+ GI+ S D+LT
Sbjct: 577 EACRNHWAKDAWLKTFG---------------------KGIERKLQAQVDTSDDELTDSD 615
Query: 3761 EERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAY---VNLKNHFGLGTDPFE 3594
+ M D I R II++ ++ + AY +NL+N F +GT P E
Sbjct: 616 DPLMPPTRGGQEYNDNQIKRIE----IISRSFRLSSFQCAYSGLLNLENPFEVGTLPHE 670