BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00034989
         (606 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP09717.1| unnamed protein product [Coffea canephora]            130   1e-31
gb|EEC81662.1| hypothetical protein OsI_25211 [Oryza sativa Indi...   127   2e-30
gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japo...   127   2e-30
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   127   3e-30
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   126   5e-30
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   126   5e-30
ref|XP_015619246.1| PREDICTED: uncharacterized protein LOC107279...   126   5e-30
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   126   5e-30
emb|CDP00431.1| unnamed protein product [Coffea canephora]            122   6e-30
gb|EEE57938.1| hypothetical protein OsJ_08648 [Oryza sativa Japo...   125   6e-30
gb|EEC74135.1| hypothetical protein OsI_09205 [Oryza sativa Indi...   125   6e-30
dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subte...   125   9e-30
gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japo...   124   1e-29
gb|PNY15111.1| ribonuclease H [Trifolium pratense]                    125   1e-29
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...   125   1e-29
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...   125   1e-29
dbj|BAF22173.1| Os07g0613900 [Oryza sativa Japonica Group]            124   2e-29
gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]           124   3e-29
gb|PNY01158.1| ribonuclease H, partial [Trifolium pratense]           123   6e-29
gb|PNX80752.1| ribonuclease H, partial [Trifolium pratense]           122   9e-29

>emb|CDP09717.1| unnamed protein product [Coffea canephora]
          Length = 613

 Score =  130 bits (327), Expect = 1e-31
 Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
 Frame = -2

Query: 605 QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
           ++GNGKA  IWE  W+P +   K+ +  P+ C +   ++ +     G  W   L+S+   
Sbjct: 179 KIGNGKATNIWEDNWIPGNKDGKVTTVMPQSCNIRRVEELIS----GFRWRIPLVSRIFN 234

Query: 425 VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAYQQLLQH---QKWEKDWPESSDRA 255
            +D  +IL + I      D   W     G ++V + Y+ L Q     K  +D    +  A
Sbjct: 235 RKDAKEILDIPISIAGREDSNYWLHSGSGTYTVNSGYKALCQETSQHKGRRDNEAGTSSA 294

Query: 254 ANSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEH 75
            ++   W+  W+L +K+K+KHF+W+ +N  +P   L+ KR    DP C  CG+  ES+EH
Sbjct: 295 NSNEKQWKWLWKLKVKSKIKHFIWRSLNGLLPVNDLVFKRIHQGDPICDGCGEQEESIEH 354

Query: 74  LFFHCECAKLVWKLAPIKW 18
           LFF C  A+ VWK+API+W
Sbjct: 355 LFFQCSRAQEVWKMAPIQW 373


>gb|EEC81662.1| hypothetical protein OsI_25211 [Oryza sativa Indica Group]
          Length = 561

 Score =  127 bits (318), Expect = 2e-30
 Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605 QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
           ++G+G  I IW  PW+P   G+      P    LV   + + D   G  W+++LLSQ   
Sbjct: 121 RMGDGSKINIWADPWIPR--GWSRKPMTPRGANLVTKVEELIDPYTG-TWDEDLLSQTFW 177

Query: 425 VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
            EDV  I  + +  E   D   WH++ +G F+VK+AY  Q+ ++ +      P  S+  +
Sbjct: 178 EEDVAAIKSIPVHVE-MEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWES 236

Query: 251 NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                W+K W+LG+  K+KHF+W++ +N +     L  RGMD+D RC  CG  NE   HL
Sbjct: 237 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHL 296

Query: 71  FFHCECAKLVWK 36
           FF C+  K VW+
Sbjct: 297 FFKCKPVKKVWQ 308


>gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japonica Group]
          Length = 639

 Score =  127 bits (319), Expect = 2e-30
 Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605 QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
           ++G+G  I IW  PW+P   G+      P    LV   + + D   G  W+++LLSQ   
Sbjct: 121 RMGDGSKINIWADPWIPR--GWSRKPMTPRGANLVTKVEELIDPYTG-TWDEDLLSQTFW 177

Query: 425 VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
            EDV  I  + +  E   D   WH++ +G F+VK+AY  Q+ ++ +      P  S+  +
Sbjct: 178 EEDVAAIKSIPVHVE-MEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWES 236

Query: 251 NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                W+K W+LG+  K+KHF+W++ +N +     L+ RGMD+D RC  CG  NE   HL
Sbjct: 237 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHL 296

Query: 71  FFHCECAKLVWK 36
           FF C+  K VW+
Sbjct: 297 FFKCKPVKKVWQ 308


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  127 bits (319), Expect = 3e-30
 Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
            ++G+G  I IW  PW+P   G+      P    LV   + + D   G  W+++LLSQ   
Sbjct: 1154 RMGDGSKINIWADPWIPR--GWSRKPMTPRGANLVTKVEELIDPYTG-TWDEDLLSQTFW 1210

Query: 425  VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
             EDV  I  + +  E   D   WH++ +G F+VK+AY  Q+ ++ +      P  S+  +
Sbjct: 1211 EEDVAAIKSIPVHVE-MEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWES 1269

Query: 251  NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                 W+K W+LG+  K+KHF+W++ +N +     L+ RGMD+D RC  CG  NE   HL
Sbjct: 1270 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHL 1329

Query: 71   FFHCECAKLVWK 36
            FF C+  K VW+
Sbjct: 1330 FFKCKPVKKVWQ 1341


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  126 bits (317), Expect = 5e-30
 Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
            ++G+G  I IW  PW+P   G+      P    LV   + + D   G  W+++LLSQ   
Sbjct: 1122 RVGDGSKINIWADPWIPR--GWSRKPMTPRGANLVTKVEELIDPYTG-TWDEDLLSQTFW 1178

Query: 425  VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
             EDV  I  + +  E   D   WH++ +G F+VK+AY  Q+ ++ +      P  S+  +
Sbjct: 1179 EEDVAAIKSIPVHVE-MEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWES 1237

Query: 251  NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                 W+K W+LG+  K+KHF+W++ +N +     L  RGMD+D RC  CG  NE   HL
Sbjct: 1238 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHL 1297

Query: 71   FFHCECAKLVWK 36
            FF C+  K VW+
Sbjct: 1298 FFKCKPVKKVWQ 1309


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  126 bits (317), Expect = 5e-30
 Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
            ++G+G  I IW  PW+P   G+      P    LV   + + D   G  W+++LLSQ   
Sbjct: 1126 RVGDGSKINIWADPWIPR--GWSRKPMTPRGANLVTKVEELIDPYTG-TWDEDLLSQTFW 1182

Query: 425  VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
             EDV  I  + +  E   D   WH++ +G F+VK+AY  Q+ ++ +      P  S+  +
Sbjct: 1183 EEDVAAIKSIPVHVE-MEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWES 1241

Query: 251  NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                 W+K W+LG+  K+KHF+W++ +N +     L  RGMD+D RC  CG  NE   HL
Sbjct: 1242 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHL 1301

Query: 71   FFHCECAKLVWK 36
            FF C+  K VW+
Sbjct: 1302 FFKCKPVKKVWQ 1313


>ref|XP_015619246.1| PREDICTED: uncharacterized protein LOC107279669 [Oryza sativa
            Japonica Group]
          Length = 1587

 Score =  126 bits (317), Expect = 5e-30
 Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
            ++G+G  I IW  PW+P   G+      P    LV   + + D   G  W+++LLSQ   
Sbjct: 1181 RVGDGSKINIWADPWIPR--GWSRKPMTPRGANLVTKVEELIDPYTG-TWDEDLLSQTFW 1237

Query: 425  VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
             EDV  I  + +  E   D   WH++ +G F+VK+AY  Q+ ++ +      P  S+  +
Sbjct: 1238 EEDVAAIKSIPVHVE-MEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWES 1296

Query: 251  NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                 W+K W+LG+  K+KHF+W++ +N +     L  RGMD+D RC  CG  NE   HL
Sbjct: 1297 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHL 1356

Query: 71   FFHCECAKLVWK 36
            FF C+  K VW+
Sbjct: 1357 FFKCKPVKKVWQ 1368


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  126 bits (317), Expect = 5e-30
 Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
            ++G+G  I IW  PW+P   G+      P    LV   + + D   G  W+++LLSQ   
Sbjct: 1181 RVGDGSKINIWADPWIPR--GWSRKPMTPRGANLVTKVEELIDPYTG-TWDEDLLSQTFW 1237

Query: 425  VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
             EDV  I  + +  E   D   WH++ +G F+VK+AY  Q+ ++ +      P  S+  +
Sbjct: 1238 EEDVAAIKSIPVHVE-MEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWES 1296

Query: 251  NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                 W+K W+LG+  K+KHF+W++ +N +     L  RGMD+D RC  CG  NE   HL
Sbjct: 1297 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHL 1356

Query: 71   FFHCECAKLVWK 36
            FF C+  K VW+
Sbjct: 1357 FFKCKPVKKVWQ 1368


>emb|CDP00431.1| unnamed protein product [Coffea canephora]
          Length = 344

 Score =  122 bits (306), Expect = 6e-30
 Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 3/199 (1%)
 Frame = -2

Query: 605 QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
           ++G+GK+IRIW+  W+PN+   +  ++ P   +    ++ + +      W +  + +   
Sbjct: 61  KVGSGKSIRIWKDQWIPNNLNGRPTTRMPASGEEQKVEELISNFR----WKRNEIYRRFN 116

Query: 425 VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAYQQLLQHQKWEKDWPESSDRAANS 246
            ED   IL++ I      D   W   K G FSVK+ YQ LL+  +  +   +  D ++  
Sbjct: 117 REDAENILKIPISLSRSGDMHFWTHCKNGEFSVKSCYQVLLKEDRSMERGAKGEDGSSYD 176

Query: 245 GGN---WRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEH 75
             N   W+  W L IK+K+K F+W+ I N +     + +R     P C  CGD  E++EH
Sbjct: 177 DSNKQIWKTLWSLNIKHKIKLFIWRCITNTLTARETIFRRTKQGSPICSRCGDGMETIEH 236

Query: 74  LFFHCECAKLVWKLAPIKW 18
           + FHC  A+ VWKLAPI+W
Sbjct: 237 ILFHCHQAQKVWKLAPIQW 255


>gb|EEE57938.1| hypothetical protein OsJ_08648 [Oryza sativa Japonica Group]
          Length = 521

 Score =  125 bits (313), Expect = 6e-30
 Identities = 68/192 (35%), Positives = 99/192 (51%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605 QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
           ++GNG  I IW  PW+P     K I+  P    LV   + + D   G  W+  +LSQ   
Sbjct: 33  RVGNGSKINIWADPWIPRGWSRKPIT--PRGANLVTKVEELIDPYTG-TWDDNMLSQTFW 89

Query: 425 VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
            EDV  I  + +  E   D   WH++ +G FSVK+AY  Q+ ++ +      P  S+  +
Sbjct: 90  EEDVAAIKSIPVHVE-MEDVLAWHFDARGCFSVKSAYKVQREMERRASRNGCPGVSNGES 148

Query: 251 NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                W+K W+LG+  K+KHF+W++ +N +     L  RGMD+D RC  CG  NE   HL
Sbjct: 149 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGQYNEDAGHL 208

Query: 71  FFHCECAKLVWK 36
            F C+  K  WK
Sbjct: 209 LFKCKPVKKWWK 220


>gb|EEC74135.1| hypothetical protein OsI_09205 [Oryza sativa Indica Group]
          Length = 521

 Score =  125 bits (313), Expect = 6e-30
 Identities = 68/192 (35%), Positives = 99/192 (51%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605 QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
           ++GNG  I IW  PW+P     K I+  P    LV   + + D   G  W+  +LSQ   
Sbjct: 33  RVGNGSKINIWADPWIPRGWSRKPIT--PRGANLVTKVEELIDPYTG-TWDDNMLSQTFW 89

Query: 425 VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
            EDV  I  + +  E   D   WH++ +G FSVK+AY  Q+ ++ +      P  S+  +
Sbjct: 90  EEDVAAIKSIPVHVE-MEDVLAWHFDARGCFSVKSAYKVQREMERRASRNGCPGVSNGES 148

Query: 251 NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                W+K W+LG+  K+KHF+W++ +N +     L  RGMD+D RC  CG  NE   HL
Sbjct: 149 GDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGQYNEDAGHL 208

Query: 71  FFHCECAKLVWK 36
            F C+  K  WK
Sbjct: 209 LFKCKPVKKWWK 220


>dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subterraneum]
          Length = 1626

 Score =  125 bits (315), Expect = 9e-30
 Identities = 66/193 (34%), Positives = 99/193 (51%)
 Frame = -2

Query: 602  LGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLCV 423
            +GNG+ + IW   WLP    FK+ S            D +  +   K W+K L+      
Sbjct: 1195 IGNGQDVHIWNDKWLPEQDKFKVWSPVSNLVPNAMVSDLI--NPVTKAWDKNLILNCFSP 1252

Query: 422  EDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAYQQLLQHQKWEKDWPESSDRAANSG 243
             +  QIL + I      D  IWHWEK G FSV++AY  L + +   K+ PE+S  ++   
Sbjct: 1253 FEAEQILNIPISWRLPADKLIWHWEKNGEFSVRSAYHMLSEDRN--KNSPEAS--SSRDQ 1308

Query: 242  GNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHLFFH 63
              W+  W++ + N +K+F+W+V    +PT   L K+G+ LD  CP C +D E  EHLF  
Sbjct: 1309 LLWKTIWKVNVPNCIKNFLWRVAKAILPTRGRLEKKGITLDTTCPLCFNDIECNEHLFMQ 1368

Query: 62   CECAKLVWKLAPI 24
            C  +K VW  +P+
Sbjct: 1369 CPLSKQVWFSSPL 1381


>gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japonica Group]
          Length = 560

 Score =  124 bits (312), Expect = 1e-29
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605 QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
           ++GNG AI IW  PW+P+    + I+  P    LV   + + D   G  W+ ELL+Q   
Sbjct: 163 RVGNGAAINIWSDPWIPSDHTRRPIT--PRGRNLVTRVEELIDPSTGS-WDVELLTQTFW 219

Query: 425 VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
            EDVN I  + +  E  +D   WH+++KG FSVK+AY  Q+  + Q+ ++     S+ + 
Sbjct: 220 PEDVNMIRTIPVHIE-MDDMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGST 278

Query: 251 NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                W+K W++ +  K+KHF+W+  +N +     L++RGMDLD RC  C   NE   HL
Sbjct: 279 EREMYWKKVWKMQLPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRCIICNRMNEDAGHL 338

Query: 71  FFHCECAKLVWK 36
           FF C+  K VW+
Sbjct: 339 FFKCKKVKKVWQ 350


>gb|PNY15111.1| ribonuclease H [Trifolium pratense]
          Length = 1334

 Score =  125 bits (314), Expect = 1e-29
 Identities = 66/193 (34%), Positives = 109/193 (56%), Gaps = 4/193 (2%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
            ++GNG++++I E  WLPN  GFK+ S + EE +       + D D  K WN++L+ Q   
Sbjct: 900  RIGNGESVKIREDRWLPNQVGFKVWS-RGEELENGALVSALIDPDT-KQWNRQLVVQTFY 957

Query: 425  VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAYQQLLQHQKWEKDWPESSDRAANS 246
             ++  QIL + I      D  IWH+E+ G +SV++A+  L QH         S D AA+S
Sbjct: 958  PDEAKQILSIPISQRLPADKIIWHYERDGEYSVRSAHHLLKQHN--------SRDVAASS 1009

Query: 245  GGN----WRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVE 78
            G      WR+ W+  + N++++F+W++  N +PT   L ++G+ ++  CP C    E+++
Sbjct: 1010 GQQMNNLWREIWKAPVPNRVRNFLWRLGKNILPTRANLVRKGVQIENLCPQCHSAPETID 1069

Query: 77   HLFFHCECAKLVW 39
            HLF HC   +L W
Sbjct: 1070 HLFLHCHLTQLTW 1082


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1557

 Score =  125 bits (314), Expect = 1e-29
 Identities = 60/189 (31%), Positives = 99/189 (52%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
            ++GNG+++R+W+ PWLP     + I+ K   C++ W  D M D+    +W+   ++Q   
Sbjct: 1294 RIGNGRSVRVWQDPWLPRDLSRRPITPK-NNCRIKWVADLMLDNG---MWDANKINQIFL 1349

Query: 425  VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAYQQLLQHQKWEKDWPESSDRAANS 246
              DV  IL++   + D  D+  WH +K G+FSV+TAY+     + W K+   SS    N 
Sbjct: 1350 PVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYRLA---ENWAKEEASSSSSDVNI 1406

Query: 245  GGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHLFF 66
               W   W+  + +K+K F W+  +NC+PT    +KR +++   C  CG + E   H   
Sbjct: 1407 RKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHALC 1466

Query: 65   HCECAKLVW 39
             C  AK +W
Sbjct: 1467 RCPQAKHLW 1475


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1585

 Score =  125 bits (314), Expect = 1e-29
 Identities = 60/189 (31%), Positives = 99/189 (52%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
            ++GNG+++R+W+ PWLP     + I+ K   C++ W  D M D+    +W+   ++Q   
Sbjct: 1322 RIGNGRSVRVWQDPWLPRDLSRRPITPK-NNCRIKWVADLMLDNG---MWDANKINQIFL 1377

Query: 425  VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAYQQLLQHQKWEKDWPESSDRAANS 246
              DV  IL++   + D  D+  WH +K G+FSV+TAY+     + W K+   SS    N 
Sbjct: 1378 PVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYRLA---ENWAKEEASSSSSDVNI 1434

Query: 245  GGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHLFF 66
               W   W+  + +K+K F W+  +NC+PT    +KR +++   C  CG + E   H   
Sbjct: 1435 RKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHALC 1494

Query: 65   HCECAKLVW 39
             C  AK +W
Sbjct: 1495 RCPQAKHLW 1503


>dbj|BAF22173.1| Os07g0613900 [Oryza sativa Japonica Group]
          Length = 1453

 Score =  124 bits (312), Expect = 2e-29
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 2/192 (1%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLC 426
            ++GNG AI IW  PW+P+    + I+  P    LV   + + D   G  W+ ELL+Q   
Sbjct: 1056 RVGNGAAINIWSDPWIPSDHTRRPIT--PRGRNLVTRVEELIDPSTGS-WDVELLTQTFW 1112

Query: 425  VEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAY--QQLLQHQKWEKDWPESSDRAA 252
             EDVN I  + +  E  +D   WH+++KG FSVK+AY  Q+  + Q+ ++     S+ + 
Sbjct: 1113 PEDVNMIRTIPVHIE-MDDMLAWHYDEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGST 1171

Query: 251  NSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHL 72
                 W+K W++ +  K+KHF+W+  +N +     L++RGMDLD RC  C   NE   HL
Sbjct: 1172 EREMYWKKVWKMQLPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRCIICNRMNEDAGHL 1231

Query: 71   FFHCECAKLVWK 36
            FF C+  K VW+
Sbjct: 1232 FFKCKKVKKVWQ 1243


>gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]
          Length = 894

 Score =  124 bits (311), Expect = 3e-29
 Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 2/195 (1%)
 Frame = -2

Query: 602  LGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCGKVWNKELLSQYLCV 423
            +GNGK + IW   WLP    FK+ S            D +      K+W+K L+      
Sbjct: 522  IGNGKDVHIWNDKWLPAQDKFKVWSPVSNLAPNAMVSDLINLET--KMWDKNLVQNCFNS 579

Query: 422  EDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAYQQLLQHQKWEKDWPESSDRAANSG 243
             +  QIL + +      D  IWHWEK G FSV++AY  L + +       ++S  A++S 
Sbjct: 580  FEAEQILNIPLSWRLPADKLIWHWEKNGEFSVRSAYHMLSEIRN------QNSPEASSSR 633

Query: 242  GN--WRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNESVEHLF 69
             +  W+  W++ + N +K+F+W++    +PT   L K+G+ LD  CP C +D E  EHLF
Sbjct: 634  DHLLWKAIWKVKVPNCIKNFLWRLAKAILPTRSRLEKKGITLDTTCPLCFNDIECNEHLF 693

Query: 68   FHCECAKLVWKLAPI 24
             HC  +K VW  +P+
Sbjct: 694  MHCPLSKQVWFSSPL 708


>gb|PNY01158.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1068

 Score =  123 bits (309), Expect = 6e-29
 Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 9/191 (4%)
 Frame = -2

Query: 602  LGNGKAIRIWEVPWLPNSPGFKLISQKPEECQLVWAKDFMRDSDCG---------KVWNK 450
            +GNG+ ++IW+ PWLP    FK           VW+     D D           K W +
Sbjct: 893  IGNGQQVKIWKDPWLPELSSFK-----------VWSPVCNLDEDAVVAELIDVDLKKWKR 941

Query: 449  ELLSQYLCVEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAYQQLLQHQKWEKDWPE 270
            EL+       + NQIL + +     +D  +W WE+ G++SV++AY  L +     +D PE
Sbjct: 942  ELVMNSFNEFEANQILNIPLSWRLPDDKKVWSWERNGNYSVRSAYHLLKEETL--RDIPE 999

Query: 269  SSDRAANSGGNWRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDN 90
             S   A + G W+  W++    ++K+F+W+V+   +PT   L ++G+ LDP CP C D  
Sbjct: 1000 PS--TAGNTGIWKSIWKVQAPQRVKNFLWRVVKRILPTRCRLEQKGVALDPICPLCHDGE 1057

Query: 89   ESVEHLFFHCE 57
            E+ EHLF HC+
Sbjct: 1058 ETQEHLFMHCQ 1068


>gb|PNX80752.1| ribonuclease H, partial [Trifolium pratense]
          Length = 696

 Score =  122 bits (307), Expect = 9e-29
 Identities = 66/196 (33%), Positives = 110/196 (56%), Gaps = 7/196 (3%)
 Frame = -2

Query: 605  QLGNGKAIRIWEVPWLPNSPGFKLISQ--KPEECQLVWAKDFMRDSDCGKVWNKELLSQY 432
            ++GNG+ ++I +  WLPN  GFK+ S+  + EE  LV     + D D  K W ++L+S  
Sbjct: 486  RIGNGEKVKICKDKWLPNQVGFKVWSRCDELEEDALV---STLIDPDT-KQWKRDLVSHI 541

Query: 431  LCVEDVNQILQVDIKAEDCNDYWIWHWEKKGHFSVKTAYQQLLQHQKWEKDWPESSDRAA 252
                +  QIL + I     +D  IWH+E+ G +SV++A+  L QH         SS  AA
Sbjct: 542  FFPHEAKQILSLPISPRLPSDKIIWHFERNGEYSVRSAHHLLKQH---------SSRNAA 592

Query: 251  NSGGN-----WRKCWRLGIKNKLKHFMWKVINNCIPTAWLLRKRGMDLDPRCPFCGDDNE 87
             + G      WR+ W   + N++++F+W++  N +PT   L ++G+ ++  CP C +  E
Sbjct: 593  GTSGQQTDILWREIWXAPVPNRVRNFLWRLGKNILPTRANLSRKGVQVENLCPQCNNAPE 652

Query: 86   SVEHLFFHCECAKLVW 39
            +++HLF HC+ A+L W
Sbjct: 653  TIDHLFLHCQLAQLTW 668