BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00031846
         (889 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP44095.1| Retrovirus-related Pol polyprotein from transposo...   256   5e-82
gb|PNX66338.1| retrovirus-related Pol polyprotein from transposo...   256   2e-81
gb|PNX99662.1| retrovirus-related Pol polyprotein from transposo...   274   5e-81
gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposo...   262   8e-81
gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposo...   254   1e-80
gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposo...   262   2e-80
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo...   261   6e-80
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   273   7e-80
gb|PNX59503.1| retrovirus-related Pol polyprotein from transposo...   253   2e-79
emb|CAN66999.1| hypothetical protein VITISV_019171, partial [Vit...   266   9e-79
gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposo...   248   4e-78
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...   255   6e-78
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...   255   7e-78
gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]      267   1e-77
emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera]   265   1e-77
gb|KYP51569.1| Retrovirus-related Pol polyprotein from transposo...   246   1e-77
dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subt...   266   2e-77
gb|PNY05793.1| histone deacetylase [Trifolium pratense]               266   2e-77
gb|KYP64927.1| Retrovirus-related Pol polyprotein from transposo...   252   2e-77
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   254   2e-77

>gb|KYP44095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 242

 Score =  256 bits (655), Expect = 5e-82
 Identities = 134/237 (56%), Positives = 166/237 (70%), Gaps = 5/237 (2%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTN-----LEPHSYKEALRIPEWNATMKKEYAALLKNQTWS 345
           M TRSK G  KPKTYAA L  +     +EP++ KEAL  PEW   MK EY AL+ NQTWS
Sbjct: 1   MTTRSKAGIFKPKTYAAALVKSSYDHTIEPNTVKEALAKPEWLKAMKDEYQALVSNQTWS 60

Query: 346 LFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKP 525
           L     LP   K IGCKWIFK K N DGS  +HKARLVAKG+ Q  GLD++ETFSPV+KP
Sbjct: 61  LV---DLPIGYKPIGCKWIFKSKYNPDGSFQRHKARLVAKGYNQKPGLDFSETFSPVVKP 117

Query: 526 ATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKS 705
            T++I+LSL++TN W I Q+DI+NAFL+GD+   +YM Q PGF  T H  +  VCKL+K+
Sbjct: 118 TTVRIVLSLAITNQWPIHQIDINNAFLHGDLQESVYMSQPPGF-NTQH--KDKVCKLNKA 174

Query: 706 LYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
           +YGLKQA R+W  KL+  L   GF  +K+D SLF R S+ + + IL YVDDII+TGS
Sbjct: 175 IYGLKQAPRSWYCKLSNTLIHMGFHSTKSDTSLFVRFSKTTTLMILIYVDDIIITGS 231


>gb|PNX66338.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 258

 Score =  256 bits (653), Expect = 2e-81
 Identities = 129/232 (55%), Positives = 163/232 (70%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
           M+TR+KTGNLKPKT+ A    ++EP + K AL  P W   M+ EY AL  N TWSL P  
Sbjct: 1   MVTRAKTGNLKPKTFLA----SIEPTNIKNALADPHWLKAMQAEYKALQDNNTWSLVP-- 54

Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
            LPP KK IGCKWIF++K N DGS+ K+KARLVAKGF Q  G D+TETFSPVIKP TI+I
Sbjct: 55  -LPPHKKAIGCKWIFRVKENPDGSINKYKARLVAKGFHQTPGFDFTETFSPVIKPVTIRI 113

Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
           IL+L++T  W ++Q+DI+NAFLNG +  E+YM Q  GF  +    + +VCKLHK+LYGLK
Sbjct: 114 ILTLAVTYKWSVQQIDINNAFLNGLLQEEVYMTQPTGFENS---DKTLVCKLHKALYGLK 170

Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
           QA RAW  +LT+ L   GF  SK D SL   +   +  ++L YVDDI++TGS
Sbjct: 171 QAPRAWYERLTQTLLQMGFIKSKCDPSLLVHHQNGACTYVLIYVDDILITGS 222


>gb|PNX99662.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1046

 Score =  274 bits (700), Expect = 5e-81
 Identities = 135/234 (57%), Positives = 174/234 (74%)
 Frame = +1

Query: 175  HHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFP 354
            H M+TR KTGNLKPK + A    + EP + K+AL  P+W A MK EY+AL+KN+TWSL P
Sbjct: 513  HPMVTRGKTGNLKPKVFLA----HSEPGTVKQALADPQWLAAMKCEYSALMKNETWSLVP 568

Query: 355  ISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATI 534
               LP  ++ IGCKW+F++K N DGSV K+KARLVAKGF+Q  G DYTETFSPV+KP TI
Sbjct: 569  ---LPAHRRAIGCKWVFRIKENPDGSVNKYKARLVAKGFSQEHGFDYTETFSPVVKPVTI 625

Query: 535  KIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYG 714
            +IIL+L+++  W I+Q+D++NAFLNG +  E+YM Q PGFV T    + +VCKLHK+LYG
Sbjct: 626  RIILTLAISFKWDIQQIDVNNAFLNGILHEEVYMVQPPGFVST---DKTLVCKLHKALYG 682

Query: 715  LKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
            LKQA RAW  +LT+ L  FGF  SK D SLF  N +D  +++L YVDDI++TGS
Sbjct: 683  LKQAPRAWYERLTQALLHFGFHASKCDPSLFVYNHKDVTLYVLVYVDDILLTGS 736


>gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 513

 Score =  262 bits (670), Expect = 8e-81
 Identities = 135/243 (55%), Positives = 168/243 (69%), Gaps = 7/243 (2%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNL-------EPHSYKEALRIPEWNATMKKEYAALLKNQT 339
           MITR+K G  KPK Y  V  T         EP S KEA+ IP W  TM +EY AL+KN T
Sbjct: 1   MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60

Query: 340 WSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVI 519
           W L   + LP  + LIGC+W+FK+K NSDGS+ +HKARLVAKGF Q +G D++ETFSPV+
Sbjct: 61  WIL---TTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVV 117

Query: 520 KPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLH 699
           KPATI+IILS+ ++ SW +RQ+DI NAFLNGD+  ++YM Q PGF+QT    + +VCKL 
Sbjct: 118 KPATIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMAQPPGFIQT---DKSLVCKLQ 174

Query: 700 KSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSC 879
           KSLYGLKQA RAW  +L   L   GF  +K D+SLF R  +D   FIL YVDDII+ GS 
Sbjct: 175 KSLYGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKDHITFILVYVDDIIICGSS 234

Query: 880 ATA 888
            +A
Sbjct: 235 TSA 237


>gb|KYP68418.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 269

 Score =  254 bits (648), Expect = 1e-80
 Identities = 126/235 (53%), Positives = 167/235 (71%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
           M TR+K G +KP+    +L T++EP + K+AL  P W+A M+ EY ALL N TWSL P  
Sbjct: 1   MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWSAAMQTEYNALLHNDTWSLVP-- 58

Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
            LPP +  IGCKW+F++K N +G+V K+KARLVAKGF Q  G DY ETFSPVIKP T+++
Sbjct: 59  -LPPHRTAIGCKWVFRVKENPNGTVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRL 117

Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
           IL+L+LT+ W I+QLD++NAFLNG ++ E+YM Q PGF  +    + +VCKLHK++YGLK
Sbjct: 118 ILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMTQPPGFEAS---DKNLVCKLHKAIYGLK 174

Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCAT 885
           QA RAW  KL   L    F  SK D SLF  +  ++ I+IL YVDDII+TG+ +T
Sbjct: 175 QAPRAWFDKLKSTLLQLNFYASKCDPSLFVYSHANNVIYILVYVDDIIITGNNST 229


>gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 552

 Score =  262 bits (670), Expect = 2e-80
 Identities = 135/243 (55%), Positives = 168/243 (69%), Gaps = 7/243 (2%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNL-------EPHSYKEALRIPEWNATMKKEYAALLKNQT 339
           MITR+K G  KPK Y  V  T         EP S KEA+ IP W  TM +EY AL+KN T
Sbjct: 1   MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60

Query: 340 WSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVI 519
           W L   + LP  + LIGC+W+FK+K NSDGS+ +HKARLVAKGF Q +G D++ETFSPV+
Sbjct: 61  WIL---TTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVV 117

Query: 520 KPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLH 699
           KPATI+IILS+ ++ SW +RQ+DI NAFLNGD+  ++YM Q PGF+QT    + +VCKL 
Sbjct: 118 KPATIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMAQPPGFIQT---DKSLVCKLQ 174

Query: 700 KSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSC 879
           KSLYGLKQA RAW  +L   L   GF  +K D+SLF R  +D   FIL YVDDII+ GS 
Sbjct: 175 KSLYGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKDHITFILVYVDDIIICGSS 234

Query: 880 ATA 888
            +A
Sbjct: 235 TSA 237


>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 535

 Score =  261 bits (666), Expect = 6e-80
 Identities = 129/232 (55%), Positives = 166/232 (71%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
           MITR+KTGNLKPKT+ A    ++ P + K AL  P W   M+ EY AL+ N+TWSL P  
Sbjct: 1   MITRTKTGNLKPKTFTA----SIAPTNVKSALAEPHWLQAMQAEYKALMDNKTWSLVP-- 54

Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
            LPP +K IGCKWIF++K N DGS+ K+KARLVAKGF Q  G D+TETFSPVIKP TI+I
Sbjct: 55  -LPPHRKAIGCKWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRI 113

Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
           IL+L++T  W ++Q+DI+NAFLNG +  E+YM Q PGF  +    + +VCKLHK+LYGLK
Sbjct: 114 ILTLAVTYKWSVQQIDINNAFLNGILQEEVYMTQPPGFESS---DKNLVCKLHKALYGLK 170

Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
           QA RAW  +LT+ L   GFT S+ D SL   +   +  ++L YVDDI++TGS
Sbjct: 171 QAPRAWYDRLTQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILITGS 222


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  273 bits (697), Expect = 7e-80
 Identities = 127/236 (53%), Positives = 177/236 (75%)
 Frame = +1

Query: 169  QGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSL 348
            Q HHM+TRSK G  KP  Y   L    EP++++EA+  P+W   M +E+ AL+KN+TWSL
Sbjct: 720  QPHHMVTRSKNGIFKPXVYTVDLNVE-EPNTFQEAISHPKWKEAMDEEFRALMKNKTWSL 778

Query: 349  FPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPA 528
                 LP ++  +GC+W+FKLKRN DGSV+++KARLVAKG++Q+ G D+ ETFSPV+KP 
Sbjct: 779  V---SLPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPT 835

Query: 529  TIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSL 708
            TI+++L+++++ SW IRQLD++NAFLNG++  E+YM+Q PGF    +  +++VCKLHK+L
Sbjct: 836  TIRVVLAIAVSQSWCIRQLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKAL 895

Query: 709  YGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
            YGLKQA RAW  KL   LQ FGF+ +K+D SLF R +  S +F+L YVDDI+VTGS
Sbjct: 896  YGLKQAPRAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGS 951


>gb|PNX59503.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 340

 Score =  253 bits (647), Expect = 2e-79
 Identities = 125/238 (52%), Positives = 164/238 (68%)
 Frame = +1

Query: 157 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
           ++    H M TR K G ++P+    +L T++EP  YK+A++ P+W   MK EY ALL N 
Sbjct: 109 IHPQNSHSMTTRGKLGIVQPRLNPTLLLTHVEPTGYKQAMQHPQWLQAMKCEYDALLTNN 168

Query: 337 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
           TWSL     LP D+  IGCKW+F+LK+N DG++ K+KARLVAKGF Q  G DYTETFSPV
Sbjct: 169 TWSLVT---LPEDRHPIGCKWVFRLKQNPDGTINKYKARLVAKGFHQKHGFDYTETFSPV 225

Query: 517 IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
           +KP T++ +L+L++TN W I+QLD++NAFLNG +D E+YM Q PGF  T    + +VCKL
Sbjct: 226 VKPVTVRTVLTLAVTNKWCIQQLDVNNAFLNGLLDEEVYMVQPPGFEAT---DKTLVCKL 282

Query: 697 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVT 870
            K+LYGLKQA RAW  +L   L   GF  SK D SLF  ++    IF+L YVDDII+T
Sbjct: 283 QKALYGLKQAPRAWFERLRSALTKLGFVPSKCDPSLFTLHANHHTIFLLVYVDDIIIT 340


>emb|CAN66999.1| hypothetical protein VITISV_019171, partial [Vitis vinifera]
          Length = 955

 Score =  266 bits (681), Expect = 9e-79
 Identities = 126/236 (53%), Positives = 173/236 (73%)
 Frame = +1

Query: 169  QGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSL 348
            Q HHM+TRSK G  KPK Y   L    EP++++EA+  P+W   M +E+ AL+KN+TWSL
Sbjct: 511  QPHHMVTRSKNGIFKPKVYTVDLNVE-EPNTFQEAISHPKWKEAMDEEFRALMKNKTWSL 569

Query: 349  FPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPA 528
                 LP ++  +GC+W+FKLKRN DGSV+++KARLVAKG++Q+ G D+ ETFS V+KP 
Sbjct: 570  V---SLPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSXVVKPT 626

Query: 529  TIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSL 708
            TI+++L + ++ SW IRQLD++NAFLNG++  E+YM+Q PGF    +  +++VCKLHK+L
Sbjct: 627  TIRVVLXIVVSQSWFIRQLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKAL 686

Query: 709  YGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
            YGLKQA RAW  KL   LQ FGF+ +K D SLF R +  S +F+L YVDDI+VT S
Sbjct: 687  YGLKQAPRAWFDKLKISLQQFGFSSTKXDQSLFVRFTNCSSLFVLVYVDDIVVTXS 742


>gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 293

 Score =  248 bits (634), Expect = 4e-78
 Identities = 122/232 (52%), Positives = 164/232 (70%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
           M TRSK+G ++PK +  +L T  EP S K+AL  P W   M  EY AL+KNQTW+L P  
Sbjct: 1   MQTRSKSGIVRPKLHPTLLLTTTEPTSLKQALSSPSWKTAMSLEYDALIKNQTWTLVP-- 58

Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
            LP ++ ++GCKW++++K N DG++ K+KARLVAKGF Q  G DY+ETFSPVIKP TI++
Sbjct: 59  -LPSNRTVVGCKWVYRIKENQDGTINKYKARLVAKGFHQKFGCDYSETFSPVIKPITIRV 117

Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
           IL+L +T  W I+Q+DI+NAFLNG ++ ++YM Q PGF  +    + +VCKL+K++YGLK
Sbjct: 118 ILTLDVTYHWPIKQVDINNAFLNGFLEEDVYMMQPPGFEVS---DKTLVCKLNKAIYGLK 174

Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
           QA RAW  +LTK L  FGF  S+ D SL         I++L YVDDIIVTG+
Sbjct: 175 QAPRAWYDRLTKTLLGFGFVQSRCDPSLLIYKQSQVCIYMLIYVDDIIVTGN 226


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 515

 Score =  255 bits (651), Expect = 6e-78
 Identities = 127/240 (52%), Positives = 166/240 (69%)
 Frame = +1

Query: 157 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
           ++ +  H MITR+KTG+LKPK +  +     EP + K AL  P+W   M+ E+ AL  N 
Sbjct: 66  ISHHNDHSMITRAKTGHLKPKAFTTIF----EPTTVKSALADPQWLQAMQTEFKALTDNN 121

Query: 337 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
           TWSL P   LPP KK IGCKWIF++K N DG++ K+KARLVAKGF Q  G D+TETFSPV
Sbjct: 122 TWSLVP---LPPHKKAIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPV 178

Query: 517 IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
           IKP TI+IIL+L++T  W ++Q+DI+NAFLNG +  E+YM Q  GF  +    + +VCKL
Sbjct: 179 IKPVTIRIILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESS---DKSLVCKL 235

Query: 697 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
           HKSLYGLKQA RAW  +LT+ L   GF  SK D SL   + + +  ++L YVDDI++TGS
Sbjct: 236 HKSLYGLKQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGS 295


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 535

 Score =  255 bits (652), Expect = 7e-78
 Identities = 128/232 (55%), Positives = 163/232 (70%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
           M+TR KTGNLKPK +      +LEP + K AL  P+W   M+ EY AL+ N TWSL P  
Sbjct: 1   MVTRGKTGNLKPKVFTV----SLEPTTIKAALTDPKWLHAMQNEYKALMDNNTWSLVP-- 54

Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
            LPP KK IGCKWIF++K NSDG+V K KARLVAKGF Q  G D+TETFSPVIKP TI++
Sbjct: 55  -LPPHKKAIGCKWIFRVKENSDGTVNKFKARLVAKGFLQTPGFDFTETFSPVIKPITIRV 113

Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
           IL+L++T  W ++Q+D++NAFLNG +  E+YM+Q  GF  +    + +VCKLHKSLYGLK
Sbjct: 114 ILTLAVTYKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFESS---DKSLVCKLHKSLYGLK 170

Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
           QA RAW  +LT+ L   GF  SK D SL     + +  ++L YVDDI++TGS
Sbjct: 171 QAPRAWYERLTQALLQMGFVTSKCDPSLLIHYQQGACTYVLIYVDDILITGS 222


>gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1418

 Score =  267 bits (682), Expect = 1e-77
 Identities = 133/240 (55%), Positives = 168/240 (70%)
 Frame = +1

Query: 157  VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
            ++ N  H MITR KTG+LKPKT+ A    ++EP + K AL  P+W   MK EY AL+ N 
Sbjct: 891  ISNNNNHPMITRGKTGHLKPKTFTA----SIEPTTIKSALASPQWLQAMKSEYKALMDNN 946

Query: 337  TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
            TWSL P   LPP KK IGCKWIF++K N DGSV K+KARLVAKGF Q  G D+TETFSPV
Sbjct: 947  TWSLVP---LPPHKKAIGCKWIFRVKENPDGSVNKYKARLVAKGFLQTPGFDFTETFSPV 1003

Query: 517  IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
            IKP T++IIL+L++T  W ++Q+DI+NAFLNG +  E+YM Q  GF  +    + +VCKL
Sbjct: 1004 IKPVTVRIILTLAVTYRWSVQQIDINNAFLNGLLQEEVYMSQPAGFEAS---DKTLVCKL 1060

Query: 697  HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
            HKSLYGLKQA RAW  +LT+ L   GF  SK D SL   +   +  ++L YVDDI++TGS
Sbjct: 1061 HKSLYGLKQAPRAWYERLTQTLLQMGFVKSKCDPSLLVHHQHGACTYVLVYVDDILITGS 1120


>emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera]
          Length = 1124

 Score =  265 bits (678), Expect = 1e-77
 Identities = 124/236 (52%), Positives = 174/236 (73%)
 Frame = +1

Query: 169  QGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSL 348
            Q HHM+TRSK G  KPK Y   L    EP++++E +  P+W   M +E+ AL+KN+TWSL
Sbjct: 473  QPHHMVTRSKNGIFKPKVYTIDLNVE-EPNTFQETISHPKWKEAMDEEFRALMKNKTWSL 531

Query: 349  FPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPA 528
                 LP ++  +GCKW+FKLKRN DGSV+++KARLVAKG+ Q+   D+++TFS V+KP 
Sbjct: 532  V---SLPSNRTSVGCKWVFKLKRNPDGSVSRYKARLVAKGYFQVPSFDFSKTFSLVVKPT 588

Query: 529  TIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSL 708
            TI+++L+++++ SW IR LD++NAFLNG++  E+YM+Q PGF    +  +++VCKLHK+L
Sbjct: 589  TIRVVLAVAVSQSWSIRXLDVNNAFLNGELQEEVYMDQXPGFDGRTNQEQKLVCKLHKTL 648

Query: 709  YGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
            YGLKQA RAW  KL   LQ FGF+ +K+D SLF R +  S +F+L YVDDI+VTGS
Sbjct: 649  YGLKQAPRAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGS 704


>gb|KYP51569.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 282

 Score =  246 bits (629), Expect = 1e-77
 Identities = 125/235 (53%), Positives = 162/235 (68%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
           M TR+K G +KP+    +L T++EP + K+AL    W+A M+ EY ALL N TWSL    
Sbjct: 1   MTTRAKDGIVKPRLQPTLLLTHVEPKTIKQALSNSTWSAVMQTEYNALLSNDTWSLV--- 57

Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
            LPP +  IGCKW+F +K N DG+V K+KARLV KGF Q  G DY ETF+PVIK  TI++
Sbjct: 58  HLPPHRTAIGCKWVFCIKENPDGTVQKYKARLVTKGFNQQFGFDYNETFAPVIKLVTIRL 117

Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
           IL+L+LT+ W ++QLDI+NAFLNG +D E+YM Q PGF  +    + +VCKLHK++YGLK
Sbjct: 118 ILTLALTHHWPLQQLDINNAFLNGTLDEEVYMTQPPGFEAS---DKNLVCKLHKAIYGLK 174

Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCAT 885
           QA RAW  KL   L  F F  SK D SLF  +  +S I+IL YVDDII+T + +T
Sbjct: 175 QAPRAWFEKLKSTLLQFNFQASKCDPSLFVYSHANSVIYILVYVDDIIITSNDST 229


>dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subterraneum]
          Length = 1442

 Score =  266 bits (681), Expect = 2e-77
 Identities = 131/240 (54%), Positives = 169/240 (70%)
 Frame = +1

Query: 157  VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
            ++ +  H MITR+KTGNLKPK Y ++     EP + K AL  P+W A M+ EY AL+ N 
Sbjct: 902  ISNHNDHSMITRAKTGNLKPKAYLSLA----EPKTVKSALSDPQWLAAMQLEYKALMDNN 957

Query: 337  TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
            TWSL P   LPP ++ IGCKW+F++K N DG+V K+KARLVAKGF Q  G D+TETFSPV
Sbjct: 958  TWSLVP---LPPHRRAIGCKWVFRIKENPDGTVNKYKARLVAKGFAQTPGFDFTETFSPV 1014

Query: 517  IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
            IKP TI+IIL+L++TN W ++Q+D++NAFLNG +  E+YM Q  GF         +VCKL
Sbjct: 1015 IKPITIRIILTLAVTNKWPVQQIDVNNAFLNGVLQEEVYMHQPAGFENA---DRSLVCKL 1071

Query: 697  HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
            HKSLYGLKQA RAW  KLT+ L +FGF  SK D SL   +   +  ++L YVDDI++TGS
Sbjct: 1072 HKSLYGLKQAPRAWYEKLTQTLLTFGFVKSKCDPSLLVHSHNGAVTYVLIYVDDILITGS 1131


>gb|PNY05793.1| histone deacetylase [Trifolium pratense]
          Length = 1485

 Score =  266 bits (681), Expect = 2e-77
 Identities = 135/240 (56%), Positives = 171/240 (71%)
 Frame = +1

Query: 157  VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQ 336
            V+ +  H M+TR KTGNLKPK +     T LEP + + AL   +W A MK EY AL+ N+
Sbjct: 945  VSNHNNHPMVTRGKTGNLKPKAFL----TQLEPKTVRHALADSKWLAAMKDEYHALMHNK 1000

Query: 337  TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 516
            TW L P   LPP KK IGC+WIF++K N DGSV K KARLVAKGF Q+ G D+TETFSPV
Sbjct: 1001 TWDLVP---LPPHKKAIGCRWIFRVKENPDGSVNKFKARLVAKGFHQIAGYDFTETFSPV 1057

Query: 517  IKPATIKIILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 696
            IKP TI+IIL+L++TN W ++Q+DI+NAFLNG +  E+YM Q PGF    H  + +VCKL
Sbjct: 1058 IKPITIRIILTLAVTNKWTVQQIDINNAFLNGFLQEEVYMVQPPGF---EHSDKTLVCKL 1114

Query: 697  HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
            ++SLYGLKQA RAW  +LT  L +FGFT S+ D SL   +   S I++L YVDDI++TGS
Sbjct: 1115 NRSLYGLKQAPRAWYERLTAALITFGFTKSRCDPSLLVYDLNGSTIYVLIYVDDILITGS 1174


>gb|KYP64927.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 470

 Score =  252 bits (644), Expect = 2e-77
 Identities = 126/232 (54%), Positives = 166/232 (71%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
           M TRSK+G  KPK Y +VL    EP + K+AL+ P+W   MKKEY+ALLKN TW+L    
Sbjct: 1   MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKKEYSALLKNNTWTLV--- 56

Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
           QLPPD+  IGCKW+F++K NSDGSV ++KARLVAKGF Q  G D+ ETFSPVIKP TI++
Sbjct: 57  QLPPDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPVIKPVTIRL 116

Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
           IL+L+++N W I QLD++NAFLNG ++  +YM+Q PGF         +VCK +K+LYGLK
Sbjct: 117 ILTLAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVP---DSTLVCKSNKALYGLK 173

Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
           QA R W  +L   L  FGF  +K D SLF  + + + +++L YVDDII+TG+
Sbjct: 174 QAPRQWFERLQYTLLQFGFKANKCDPSLFTYHVQSNIVYLLVYVDDIIITGN 225


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 539

 Score =  254 bits (649), Expect = 2e-77
 Identities = 126/232 (54%), Positives = 167/232 (71%)
 Frame = +1

Query: 181 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNATMKKEYAALLKNQTWSLFPIS 360
           M TRSK+G  KPK Y +VL    EP + K+AL+ P+W   MK+EY+ALLKN TW+L    
Sbjct: 1   MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLV--- 56

Query: 361 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 540
           QLPPD+  IGCKW+F++K NSDGSV ++KARLVAKGF Q  G D+ ETFSP+IKP TI++
Sbjct: 57  QLPPDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRL 116

Query: 541 ILSLSLTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 720
           IL+L+++N W I QLD++NAFLNG ++  +YM+Q PGF         +VCKL+K+LYGLK
Sbjct: 117 ILTLAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVP---DSTLVCKLNKALYGLK 173

Query: 721 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 876
           QA R W  +L   L  FGF  SK D SLF  + + + +++L YVDDII+TG+
Sbjct: 174 QAPRQWFERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGN 225