BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia30_contig00031675
         (1222 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygro...   141   2e-52
gb|KYP44478.1| Retrovirus-related Pol polyprotein from transposo...   114   4e-47
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   124   1e-46
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   120   9e-46
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   117   5e-44
gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposo...   117   5e-44
ref|XP_022156747.1| uncharacterized protein LOC111023586 [Momord...   127   7e-44
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   117   2e-42
dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subt...   114   3e-42
gb|PNY02430.1| retrovirus-related Pol polyprotein from transposo...   103   1e-41
gb|KYP59913.1| Retrovirus-related Pol polyprotein from transposo...   113   2e-41
dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subt...   113   2e-41
gb|PNX81124.1| histone deacetylase, partial [Trifolium pratense]      108   3e-41
gb|PNX91972.1| retrovirus-related Pol polyprotein from transposo...   109   4e-41
gb|KYP66618.1| Retrovirus-related Pol polyprotein from transposo...   113   4e-41
gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]   104   2e-40
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc...   118   2e-40
gb|PNY05793.1| histone deacetylase [Trifolium pratense]               103   4e-40
dbj|GAU49672.1| hypothetical protein TSUD_91100 [Trifolium subte...   107   4e-40
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   108   1e-39

>gb|KZV26181.1| hypothetical protein F511_06348 [Dorcoceras hygrometricum]
          Length = 706

 Score =  141 bits (355), Expect(2) = 2e-52
 Identities = 95/236 (40%), Positives = 121/236 (51%)
 Frame = -2

Query: 1008 PRCQICHYSGHTVDRCFYRINLNFVPXXXXXXXXXXNPD*QGQNFGXXXXXXXXXXXXXX 829
            P CQIC   GH  + C+YR +  FVP              Q Q                 
Sbjct: 209  PVCQICGIPGHVAEICYYRFDKEFVPKSSGVSRTS-----QQQFNRSSPSYPPSAFASTK 263

Query: 828  XXXXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSC 649
                S+  WY DSGA +HV  ++GNL+++S   G  +VQ  NG GL I + G S +    
Sbjct: 264  SESASEEWWYPDSGASHHVTNDLGNLSVSSEYTGGSKVQVGNGAGLSISNIGESNLNMFP 323

Query: 648  TKFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKLR 469
            +     FLL+NLLHVP ITKN ISVS+FA DN VYFEF+PSFC+VK  AT  VLL+  L 
Sbjct: 324  SS--RPFLLKNLLHVPLITKNLISVSKFAYDNHVYFEFHPSFCLVKDPATHVVLLRGTLH 381

Query: 468  NGLYCFHLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLGH 301
            NGLY F+L +   +    +P    S  SP   P  +   + +N LD    H RLGH
Sbjct: 382  NGLYRFNL-KSRISGPLHSPACLQSSVSPIKVPDQSPLCLPQNTLD--KWHLRLGH 434



 Score = 95.1 bits (235), Expect(2) = 2e-52
 Identities = 48/95 (50%), Positives = 58/95 (61%)
 Frame = -3

Query: 290 NKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*A 111
           N +   C SC   K H LPF  S T   AP +++++DLWGP+ I    G  YYISFVD  
Sbjct: 454 NDNISFCSSCQLGKNHLLPFPQSTTNFSAPFEVVYSDLWGPAHIPSRNGSRYYISFVDAY 513

Query: 110 TRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
           TR+T IY LKLKS+ TQ FI F+   E  FN KIK
Sbjct: 514 TRYTWIYFLKLKSEVTQTFINFQKYTELHFNAKIK 548


>gb|KYP44478.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 605

 Score =  114 bits (284), Expect(2) = 4e-47
 Identities = 95/325 (29%), Positives = 136/325 (41%), Gaps = 7/325 (2%)
 Frame = -2

Query: 1221 ENRLTYNLSSNSESFYLNMTTQGPSPGYRRGGPNQYIGRGFFHHQ---YQXXXXXXXXXX 1051
            ENRL        ES  +         G++  G   + GRG  +H+    +          
Sbjct: 152  ENRLERQKQEEQESLNMQANYVQFPGGFQGRGQGYFRGRGQQNHRGRNRENFRGGKSFGR 211

Query: 1050 XXXXXXXXXXXXXGPRCQICHYSGHTVDRCFYRINLNFVPXXXXXXXXXXNPD*QGQ-NF 874
                          P CQ+C+  GHT   C++R N  +                +     
Sbjct: 212  APSRGYDKQNNYNRPICQVCNKPGHTALNCYHRFNPQYQDSSAQQVSNSSKTQQKAMVTK 271

Query: 873  GXXXXXXXXXXXXXXXXXXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTG 694
            G                   D  WY D+ A NH+  N  N+   S   G  +++  NG  
Sbjct: 272  GNLDYQSNVSALMAVPDTFYDPAWYPDTRATNHITANASNMAGKSTYTGETKLKMANGDS 331

Query: 693  LEIVHFGNSLVKSSCTKFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVV 514
              I H G+S + SS +  + +FL +NLLHVP I+KN ISVSQF +DN+V FEF  + C V
Sbjct: 332  TSIQHIGHSYLYSSNSN-KPLFL-KNLLHVPSISKNLISVSQFCRDNNVKFEFTANNCCV 389

Query: 513  KSIATGTVLLKEKLRNGLYCFHLIQ--PSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRN 340
            KS  +   LL+     GLY FH I   PS   S       T+ +S +I       E+  N
Sbjct: 390  KSQDSKHTLLEGHFTKGLYVFHNISVGPSVCNS------VTTENSNSI------RELPNN 437

Query: 339  KLDI-ETRHSRLGHAYYQ*KSDIMS 268
            K D+    H++LGHA Y+   D+M+
Sbjct: 438  KCDLYRIWHAKLGHANYKIVHDVMN 462



 Score =  104 bits (260), Expect(2) = 4e-47
 Identities = 50/96 (52%), Positives = 61/96 (63%)
 Frame = -3

Query: 290 NKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*A 111
           N +  LC SC   K HK PF  SNT   +PL LI+TD+WGP+PI    G  YYI F+D  
Sbjct: 471 NSTFSLCKSCCLGKLHKQPFYYSNTVYTSPLQLIYTDIWGPAPIPSSSGSKYYIEFIDAF 530

Query: 110 TRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIKC 3
           ++FT IYL+  KS A Q F  FKN++E Q N KIKC
Sbjct: 531 SKFTWIYLISNKSQALQCFSHFKNMIENQLNSKIKC 566


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  124 bits (311), Expect(2) = 1e-46
 Identities = 88/241 (36%), Positives = 114/241 (47%), Gaps = 5/241 (2%)
 Frame = -2

Query: 1008 PRCQICHYSGHTVDRCFYRINLNF-VPXXXXXXXXXXNPD*QGQNFGXXXXXXXXXXXXX 832
            P CQ+C   GH V +C+YR +  F VP                                 
Sbjct: 308  PACQLCGKIGHVVAQCYYRFDHTFQVPQNLSSRNSSPR--------AYYSFSPQVNGVIP 359

Query: 831  XXXXXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSS 652
                 SD  WY DSGA NHV  N  NL  ++   G  +V   NGTGL I H G S   S 
Sbjct: 360  TSEVFSDDNWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIGQSEFLSP 419

Query: 651  CTKFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKL 472
             +      LL +LLHVP ITKN +SVS+FAKDN V+FEF+   C VK   T  VL+  K+
Sbjct: 420  FSS--KPLLLNHLLHVPSITKNLLSVSKFAKDNKVFFEFHSDSCFVKDQVTQAVLMVGKV 477

Query: 471  RNGLYCF---HL-IQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLG 304
            R+GLY F   HL ++P+ + S+      +SFSS     +++S          +  H RLG
Sbjct: 478  RDGLYAFDSSHLALRPTQSLSKSPSVVASSFSSKVCTTSLSST--------FDLWHKRLG 529

Query: 303  H 301
            H
Sbjct: 530  H 530



 Score = 92.4 bits (228), Expect(2) = 1e-46
 Identities = 46/98 (46%), Positives = 60/98 (61%)
 Frame = -3

Query: 299 HIINKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFV 120
           HI       C SC   K H+ PF  S+T    PL+LIH DLWGP+ +    G+ YYI FV
Sbjct: 547 HINKMDSNFCSSCCLGKIHRFPFSLSHTTYTKPLELIHLDLWGPTLVLSNSGYRYYIHFV 606

Query: 119 D*ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
           D  +RF+ I+LL+ KS+A + F+ FK  VE QF+ KIK
Sbjct: 607 DAFSRFSWIFLLRNKSEAIKTFVNFKTQVELQFDLKIK 644


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  120 bits (302), Expect(2) = 9e-46
 Identities = 84/237 (35%), Positives = 115/237 (48%), Gaps = 1/237 (0%)
 Frame = -2

Query: 1008 PRCQICHYSGHTVDRCFYRINLNFV-PXXXXXXXXXXNPD*QGQNFGXXXXXXXXXXXXX 832
            P+CQ+C   GH V +C+YR + +F  P          N     Q                
Sbjct: 284  PQCQLCGRIGHVVMQCYYRFDQSFTGPSQLQGNRPQGNMAHLHQQLSEXFFPGTPSVKPT 343

Query: 831  XXXXXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSS 652
                  D  WY DSGA +H+  N+ NL   S    ++ V   NG GL I H G++   SS
Sbjct: 344  TAEIIQDNNWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSS 403

Query: 651  CTKFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKL 472
                + + L Q LLHVP+ITKN +SVS+FA DN V+FEF+P+ C VK  +T TVL+  +L
Sbjct: 404  FIPSKTLALKQ-LLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDPSTRTVLMHGQL 462

Query: 471  RNGLYCFHLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLGH 301
            + GLY F   Q        N     S + P+  PT+ ++      L     H+RLGH
Sbjct: 463  KGGLYVFDNTQ--LKLPLHNSSCFASTALPSKEPTVPASPTSPFTL----WHNRLGH 513



 Score = 93.2 bits (230), Expect(2) = 9e-46
 Identities = 46/98 (46%), Positives = 58/98 (59%)
 Frame = -3

Query: 299 HIINKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFV 120
           H+     ++C  C   K HK  FL S +    PL+LIHTDLWGP+      G  YYI F+
Sbjct: 530 HLNKIPSLICSXCCMGKIHKSSFLHSTSSYTKPLELIHTDLWGPASTPSSHGHQYYIHFI 589

Query: 119 D*ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
           D  +RFT IY+LK KS+A Q F+ FK+ VE Q   KIK
Sbjct: 590 DAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIK 627


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  117 bits (293), Expect(2) = 5e-44
 Identities = 73/235 (31%), Positives = 109/235 (46%)
 Frame = -2

Query: 1002 CQICHYSGHTVDRCFYRINLNFVPXXXXXXXXXXNPD*QGQNFGXXXXXXXXXXXXXXXX 823
            CQ+C   GH    C++R +  +            NP  Q Q                   
Sbjct: 273  CQVCGKIGHIAFHCWHRYDQQYTEPNLNHNTNVYNPGNQQQ---------MQAMIAGSQN 323

Query: 822  XXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCTK 643
               D +WY DSGA NH+  ++ NL   ++  G +++   NG  + I H G S   +  + 
Sbjct: 324  MVYDDQWYPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGTSFFHTPMSS 383

Query: 642  FRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKLRNG 463
               IF L+ LLHVP ITKN +SVS+F KDN+VY EF+ ++C+VKS  +   LL+  L+NG
Sbjct: 384  --KIFTLKELLHVPHITKNLLSVSKFCKDNNVYVEFHTNYCLVKSQDSKETLLRGNLKNG 441

Query: 462  LYCFHLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLGHA 298
            LY F  +Q       ++       +   +Y       V R +   +  H+RL HA
Sbjct: 442  LYVFDEVQILKPDVYEHTVDSVPTNRTTLY-------VQRTRKSYDVWHNRLAHA 489



 Score = 90.9 bits (224), Expect(2) = 5e-44
 Identities = 44/99 (44%), Positives = 61/99 (61%)
 Frame = -3

Query: 302 MHIINKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISF 123
           M I ++  I+C SC   K H LPF DS T   +PL+L+++D+WGPS      GF YY+ F
Sbjct: 505 MPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLELVYSDVWGPSHYASREGFRYYVHF 564

Query: 122 VD*ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
            D  +++T IY +  KS+    FI FK++VE QF  KIK
Sbjct: 565 TDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFGHKIK 603


>gb|KYP53212.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 533

 Score =  117 bits (293), Expect(2) = 5e-44
 Identities = 73/235 (31%), Positives = 109/235 (46%)
 Frame = -2

Query: 1002 CQICHYSGHTVDRCFYRINLNFVPXXXXXXXXXXNPD*QGQNFGXXXXXXXXXXXXXXXX 823
            CQ+C   GH    C++R +  +            NP  Q Q                   
Sbjct: 139  CQVCGKIGHIAFHCWHRYDQQYTEPNLNHNTNVYNPGNQQQ---------MQAMIAGSQN 189

Query: 822  XXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCTK 643
               D +WY DSGA NH+  ++ NL   ++  G +++   NG  + I H G S   +  + 
Sbjct: 190  MVYDDQWYPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGTSFFHTPMSS 249

Query: 642  FRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKLRNG 463
               IF L+ LLHVP ITKN +SVS+F KDN+VY EF+ ++C+VKS  +   LL+  L+NG
Sbjct: 250  --KIFTLKELLHVPHITKNLLSVSKFCKDNNVYVEFHTNYCLVKSQDSKETLLRGNLKNG 307

Query: 462  LYCFHLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLGHA 298
            LY F  +Q       ++       +   +Y       V R +   +  H+RL HA
Sbjct: 308  LYVFDEVQILKPDVYEHTVDSVPTNRTTLY-------VQRTRKSYDVWHNRLAHA 355



 Score = 90.9 bits (224), Expect(2) = 5e-44
 Identities = 44/99 (44%), Positives = 61/99 (61%)
 Frame = -3

Query: 302 MHIINKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISF 123
           M I ++  I+C SC   K H LPF DS T   +PL+L+++D+WGPS      GF YY+ F
Sbjct: 371 MPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLELVYSDVWGPSHYASREGFRYYVHF 430

Query: 122 VD*ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
            D  +++T IY +  KS+    FI FK++VE QF  KIK
Sbjct: 431 TDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFGHKIK 469


>ref|XP_022156747.1| uncharacterized protein LOC111023586 [Momordica charantia]
          Length = 1256

 Score =  127 bits (319), Expect(2) = 7e-44
 Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 10/184 (5%)
 Frame = -2

Query: 813 DFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKS--SCTKF 640
           D  WY DSGA NHV  + GN ++ S   GN ++Q  NGT L I H G++L++S  +    
Sbjct: 241 DVTWYPDSGATNHVTNDFGNFSLGSKYHGNGKIQVGNGTNLSISHIGSALLQSISASNSS 300

Query: 639 RHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKLRNGL 460
           + +F LQNLLHVP I KN IS+S FAKDN V+FEF+PS   VK + TG +L +  + + L
Sbjct: 301 QPVFHLQNLLHVPQIAKNLISLSLFAKDNHVFFEFHPSNYFVKDLTTGQLLFQGTVHDEL 360

Query: 459 YCFHLIQPSYTKSQDNPPPQTSFSSPNIYPTI----NS----AEVMRNKLDIETRHSRLG 304
           Y F L + S  K        TS +SP I+ +I    NS    A +  N   ++  H R G
Sbjct: 361 YQFELRKASSQKPFS--VSSTSNNSPTIFNSILQYSNSPMLHAPITCNTSVLDIWHRRFG 418

Query: 303 HAYY 292
           H+++
Sbjct: 419 HSFF 422



 Score = 80.5 bits (197), Expect(2) = 7e-44
 Identities = 44/98 (44%), Positives = 54/98 (55%)
 Frame = -3

Query: 302 MHIINKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISF 123
           M   NK+  LCH     K H LPF  S T    PL L+  DLWG + +    GF Y++SF
Sbjct: 430 MRSCNKTSTLCHVYAIGKAHNLPFPTSQTVYTTPLQLVVADLWGSAYVSSQNGFRYFLSF 489

Query: 122 VD*ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKI 9
           VD  +  T IY L  KS+A QAF+ FK+LVE   N  I
Sbjct: 490 VDSYSHHTWIYFLHNKSEAFQAFLLFKSLVEKSLNCSI 527


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  117 bits (293), Expect(2) = 2e-42
 Identities = 82/237 (34%), Positives = 110/237 (46%), Gaps = 2/237 (0%)
 Frame = -2

Query: 1005 RCQICHYSGHTVDRCFYRINLNFVPXXXXXXXXXXNPD*QGQNFGXXXXXXXXXXXXXXX 826
            +CQ+CH  GH    C+YR +  +VP          + + Q  N G               
Sbjct: 299  QCQVCHRYGHVASACYYRFDETYVPSSPLEAPAYPSNN-QHTNPGACNN----------- 346

Query: 825  XXXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCT 646
                   WY DSGA NHV     N++  +  +G +++   NG GL I   G +   S   
Sbjct: 347  ------NWYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPIN 400

Query: 645  -KFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKL- 472
             KF+  F L NLL VP ITKN ISVSQF+KDN VYFEF+P  C+VKS  T  VLL+  + 
Sbjct: 401  PKFQ--FALNNLLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTNEVLLQGSVG 458

Query: 471  RNGLYCFHLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLGH 301
             +GLY F  + P+        P   S     +    +      + +   T HSRLGH
Sbjct: 459  SDGLYKFPALLPN--------PSTQSVQQQQLARIFSVNTAATSPVSFATWHSRLGH 507



 Score = 85.5 bits (210), Expect(2) = 2e-42
 Identities = 41/97 (42%), Positives = 56/97 (57%)
 Frame = -3

Query: 296 IINKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD 117
           + N     C  C   K H+LP   S T    P DL+++DLWGP+P+    G+ YY++FVD
Sbjct: 525 VSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPVTSTCGYQYYVTFVD 584

Query: 116 *ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
             TRFT IYLLK K+     F QF  +V+ Q++  IK
Sbjct: 585 AHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIK 621


>dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subterraneum]
          Length = 888

 Score =  114 bits (285), Expect(2) = 3e-42
 Identities = 71/172 (41%), Positives = 97/172 (56%), Gaps = 4/172 (2%)
 Frame = -2

Query: 804 WYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCTKFRHIFL 625
           WY DSGA  HV  +  N+   +   G+E +   NG  L I+  G+S+  +      H+ +
Sbjct: 208 WYPDSGASFHVTGDSRNIQEPTPFAGSEHIYMGNGQSLPIISSGSSIFNAPNHTQTHL-I 266

Query: 624 LQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKL-RNGLYCFH 448
           L NLLHVP ITKN ISVSQFAKDN VYFEF+P++C+VKS AT  VLL+  +  +GLY F 
Sbjct: 267 LNNLLHVPSITKNLISVSQFAKDNAVYFEFHPNYCLVKSQATNKVLLQGNVGTDGLYSFS 326

Query: 447 LIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETR---HSRLGH 301
            I  +  KS        S   P+++   +S+ V  + L   +    H RLGH
Sbjct: 327 HISIAPAKSSS----LLSSFKPSVFNVHSSSTVSNSSLSFNSLYLWHLRLGH 374



 Score = 87.8 bits (216), Expect(2) = 3e-42
 Identities = 47/99 (47%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
 Frame = -3

Query: 296 IINKSQI--LCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISF 123
           I NK  +   C +C   K H+L    S T    PL+L+ +DLWGPSP    LGF+YYISF
Sbjct: 392 INNKHDVSNFCTACCMGKAHRLYAPASQTTYTQPLELVFSDLWGPSPTVSSLGFHYYISF 451

Query: 122 VD*ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
           +D  +R+T IYLLK KSDA   F QFK + E Q    +K
Sbjct: 452 IDAYSRYTWIYLLKSKSDAFTIFKQFKTMAELQLGHSLK 490


>gb|PNY02430.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 1064

 Score =  103 bits (256), Expect(2) = 1e-41
 Identities = 70/178 (39%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
 Frame = -2

Query: 804 WYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCTKFRHIFL 625
           W+ DSGA  HV  +  NL   +  +G++++   NG GL I+  G+S   S      ++  
Sbjct: 390 WFPDSGASFHVTGDSRNLQQLTPFEGHDQIYIGNGQGLPILSSGSSTFPSPTHPHLNL-T 448

Query: 624 LQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKL-RNGLYCFH 448
           L NLLHVP ITKN ISVSQF KDN VYF F  + C+VKS A    LL+ ++  +GLY F 
Sbjct: 449 LNNLLHVPHITKNLISVSQFCKDNSVYFVFTSNECLVKSQANNATLLQGQVGSDGLYEFP 508

Query: 447 LIQPSYTKSQDNPPPQTSFSSPNI--YPTINSAEVMRNKLDIETR-----HSRLGHAY 295
            I+    K    P   +S SS ++  +P++NS  V  N + I        H RLGH +
Sbjct: 509 AIRLHTGKPPLVPKSLSSNSSMSVAKFPSVNSLTVANNPVCITQNSQYMWHLRLGHPH 566



 Score = 97.4 bits (241), Expect(2) = 1e-41
 Identities = 50/89 (56%), Positives = 60/89 (67%)
 Frame = -3

Query: 272 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 93
           C +C   K HKL  L S+TQ   PL+L+ +DLWGPSP    LG+NYYI+FVD  +RFT I
Sbjct: 591 CTACCMGKAHKLHSLPSHTQYTHPLELVFSDLWGPSPQPSTLGYNYYITFVDAYSRFTWI 650

Query: 92  YLLKLKSDATQAFIQFKNLVETQFNKKIK 6
           YLLK KSDA   F QFK +VE QF   +K
Sbjct: 651 YLLKSKSDAFIIFKQFKAMVELQFGHSLK 679


>gb|KYP59913.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 326

 Score =  113 bits (283), Expect(2) = 2e-41
 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 3/175 (1%)
 Frame = -2

Query: 813 DFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCTKFRH 634
           D +WY DSGA NH+  ++ NL    +  G +++   NG  + I H G S   +S +    
Sbjct: 17  DDQWYPDSGATNHLTPDLNNLGSKIDYTGQDKIHMGNGQAIGINHTGTSFFHTSMSS--K 74

Query: 633 IFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKLRNGLYC 454
           +F L+NLLHVP ITKN +SVS+F KDN+VY E + ++C+VKS  +   LL+  L+NGLY 
Sbjct: 75  VFTLKNLLHVPHITKNLLSVSKFCKDNEVYVEVHTNYCLVKSQDSKETLLRGNLKNGLYV 134

Query: 453 F---HLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLGHA 298
           F    +++P   +   +P P            + +  V R +   +  H+RL HA
Sbjct: 135 FDEVQILKPDVYEDTVDPVP----------TNLTTLNVQRYRESYDVWHNRLAHA 179



 Score = 86.3 bits (212), Expect(2) = 2e-41
 Identities = 43/97 (44%), Positives = 57/97 (58%)
 Frame = -3

Query: 296 IINKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD 117
           I NK  I+C SC   K H LPF  S T   +PL+L+++D+WGPS      GF YY+ F D
Sbjct: 197 INNKDSIVCKSCCIGKSHTLPFSYSFTVYNSPLELVYSDVWGPSHYVSREGFRYYVHFTD 256

Query: 116 *ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
             +++T IY +  KS+     I FK +VE QF  KIK
Sbjct: 257 AYSKYTWIYFMHNKSETAHHVIHFKTMVENQFGNKIK 293


>dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subterraneum]
          Length = 1295

 Score =  113 bits (283), Expect(2) = 2e-41
 Identities = 72/172 (41%), Positives = 100/172 (58%), Gaps = 4/172 (2%)
 Frame = -2

Query: 804 WYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCTKFRHIFL 625
           WY DSGA  HV  +  N+  T++  G+E +   NG  L I+  G S+  SS    +   +
Sbjct: 399 WYPDSGASFHVTGDPRNIQETASFAGSEHIYMGNGQSLPIISAG-SITFSSPNHTQTQLI 457

Query: 624 LQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKL-RNGLYCFH 448
           L NLLHVP ITKN ISVSQFAKDNDV+FEF+P++C+VKS AT  VLL+  +  +GLY F 
Sbjct: 458 LNNLLHVPSITKNLISVSQFAKDNDVFFEFHPTYCLVKSQATNEVLLQGNVGSDGLYSFS 517

Query: 447 LIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETR---HSRLGH 301
            I  +  KS +      S   P+++ T  S+ +  ++    +    H RLGH
Sbjct: 518 NISIAPAKSLN----LNSNFKPSVFNTQASSILYNSRQSCNSLYLWHLRLGH 565



 Score = 85.9 bits (211), Expect(2) = 2e-41
 Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
 Frame = -3

Query: 296 IINKSQI--LCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISF 123
           I NK+ +   C +C   K H+L    S T    PL L+ +DLWGPSP    LGF YYI+F
Sbjct: 583 INNKNDVSSFCTACCMGKAHRLHSSASQTTYTHPLKLVFSDLWGPSPCVSSLGFQYYITF 642

Query: 122 VD*ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
           +D  +R+T IYLLK KSDA   F QFK + E Q    +K
Sbjct: 643 IDAYSRYTWIYLLKSKSDAFTIFKQFKTMAELQLGHPLK 681


>gb|PNX81124.1| histone deacetylase, partial [Trifolium pratense]
          Length = 660

 Score =  108 bits (270), Expect(2) = 3e-41
 Identities = 70/182 (38%), Positives = 99/182 (54%), Gaps = 12/182 (6%)
 Frame = -2

Query: 804 WYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCTKFRHIFL 625
           WY DSGA +H+ FN  NL      QG+++V   NG G+ I   G S  +S      H+  
Sbjct: 365 WYPDSGASHHLTFNPNNLAYRVPYQGHDQVTMGNGQGVSIKSLGQSSFQSPYDHTVHL-K 423

Query: 624 LQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKL-RNGLYCFH 448
           L +LLHVP+I+KN +SVS+FAKDN+V+FEF+P  C VKS  +  +LL + +  +GLY F 
Sbjct: 424 LNDLLHVPNISKNLLSVSKFAKDNNVFFEFHPHNCYVKSQGSNHILLDDTVGPDGLYKFK 483

Query: 447 LIQPSYTKSQDNPPPQTSFSSPNIYPT----INSAEVMRNKLDIE-------TRHSRLGH 301
             +  +  +  + P   S  SP ++ +     N      N L IE       T H RLGH
Sbjct: 484 PFE--FKSTTQSSPTLLSNKSPTLFSSHLAAFNKNVQCNNALTIEHVDSTLHTWHLRLGH 541

Query: 300 AY 295
           A+
Sbjct: 542 AH 543



 Score = 90.5 bits (223), Expect(2) = 3e-41
 Identities = 43/89 (48%), Positives = 57/89 (64%)
 Frame = -3

Query: 272 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 93
           C +C   K H+L    SN     P ++IH DLWGP+P + + G+NYYI+FVD  T++T I
Sbjct: 567 CVACCVGKSHRLYAPLSNIVYTKPFEVIHCDLWGPAPFQSYYGYNYYITFVDTYTKYTWI 626

Query: 92  YLLKLKSDATQAFIQFKNLVETQFNKKIK 6
           YLL  KSDA +AF QF  L++ QF   IK
Sbjct: 627 YLLNQKSDALKAFTQFATLIQNQFQASIK 655


>gb|PNX91972.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 1516

 Score =  109 bits (273), Expect(2) = 4e-41
 Identities = 74/174 (42%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
 Frame = -2

Query: 804 WYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCTKFRHIFL 625
           WY DSGA  HV  +  N+   S   G E +   NG  L+I   G+S+  S      H+  
Sbjct: 432 WYPDSGASFHVTGDSRNIQQPSPFAGAEHIYMGNGQSLKIFSSGSSVFTSPNHTQTHL-T 490

Query: 624 LQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKL-RNGLYCFH 448
           L  LLHVP ITKN ISVSQFAKDN VYFEF+P+FCVVKS AT  VLL+  +  +GLY F 
Sbjct: 491 LNKLLHVPSITKNLISVSQFAKDNAVYFEFHPNFCVVKSQATNAVLLQGSVGSDGLYSFS 550

Query: 447 LIQPSYTKSQDNPPPQTSFSS--PNIYPTINSAEVMRNKLDIETR---HSRLGH 301
            I      S +   P T  SS  P++    +++ +  + L   +    H RLGH
Sbjct: 551 NI------SIEPAKPSTLHSSFQPSVCSVSSNSNLCSSNLSFNSLYLWHLRLGH 598



 Score = 89.0 bits (219), Expect(2) = 4e-41
 Identities = 47/97 (48%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
 Frame = -3

Query: 290 NKSQI--LCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD 117
           NKS +  LC +C   K H+L    S T    PL+L+ +DLWGPSP    LGF+YYI+F+D
Sbjct: 618 NKSDVSALCTACCMGKAHRLHSSASQTTYNHPLELVFSDLWGPSPTVSSLGFHYYITFID 677

Query: 116 *ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
             +R+T IYLLK KSDA   F QFK + E Q    +K
Sbjct: 678 AFSRYTWIYLLKSKSDAFTVFKQFKAMAELQLGYPLK 714


>gb|KYP66618.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 660

 Score =  113 bits (282), Expect(2) = 4e-41
 Identities = 70/171 (40%), Positives = 92/171 (53%)
 Frame = -2

Query: 813 DFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSCTKFRH 634
           D  WY D+GA NH   N+ NL I +   G E+V   NG  L I + G S +K+       
Sbjct: 122 DETWYPDTGASNHFTSNLSNLMIKTPFVGTEKVVVGNGNCLPIHNIGTSKLKNPSNNIA- 180

Query: 633 IFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKLRNGLYC 454
            F L  LLHVPDITKN +SV+QFAK+N  +FEF+ + C VKS  +  +LL+ KL+NGLY 
Sbjct: 181 -FTLNKLLHVPDITKNLLSVAQFAKENSCFFEFHSTDCFVKSQGSRKILLQGKLKNGLYA 239

Query: 453 FHLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLGH 301
           F  +Q       ++ P    +SS     T NS  +          HSRLGH
Sbjct: 240 FENLQ--IVHPNNDFPVSALYSS----TTCNSLPIW---------HSRLGH 275



 Score = 85.5 bits (210), Expect(2) = 4e-41
 Identities = 39/96 (40%), Positives = 59/96 (61%)
 Frame = -3

Query: 293 INKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD* 114
           ++ +  +C SC   K HK  F  S +    PL L+++D+WGPSPI    G+ YYI F+D 
Sbjct: 294 LHDNATVCGSCCLGKMHKSSFSISESVYTEPLQLVYSDIWGPSPIPSKEGYRYYIVFLDA 353

Query: 113 ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
            ++F+  Y LK +S A  +F++FK + E QF KK+K
Sbjct: 354 YSKFSWAYFLKYRSQALNSFLEFKKMAELQFQKKLK 389


>gb|PNY01489.1| copia-like polyprotein, partial [Trifolium pratense]
          Length = 1000

 Score =  104 bits (260), Expect(2) = 2e-40
 Identities = 50/89 (56%), Positives = 60/89 (67%)
 Frame = -3

Query: 272 CHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT*I 93
           C +C   K H LPF  S++    PL LIH+D+WGP+PI    GF YY+ F+D  +RFT I
Sbjct: 474 CEACQFGKLHLLPFKSSSSHVQEPLGLIHSDVWGPAPILSPSGFKYYVHFIDDFSRFTWI 533

Query: 92  YLLKLKSDATQAFIQFKNLVETQFNKKIK 6
           + LK KSD   AFIQFKNL E QFNKKIK
Sbjct: 534 FPLKQKSDTIHAFIQFKNLAENQFNKKIK 562



 Score = 91.7 bits (226), Expect(2) = 2e-40
 Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 1/236 (0%)
 Frame = -2

Query: 1005 RCQICHYSGHTVDRCFYRINLNFVPXXXXXXXXXXNPD*QGQNFGXXXXXXXXXXXXXXX 826
            +CQ+C  +GHT   C YR + ++                 G+N+                
Sbjct: 260  KCQVCSGTGHTAVDCSYRFDRSYT----------------GRNYSTEADKQGSHSAFVAS 303

Query: 825  XXXS-DFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSC 649
                 D+ WY DSGA NHV          +   G   +   NG  L+IV  G++ + +  
Sbjct: 304  PYHGQDYEWYFDSGASNHVTHQTDKFQGFNEHNGKNSLMVGNGEKLKIVASGSTKLNT-- 361

Query: 648  TKFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKLR 469
                    L ++L+VP ITKN +SVS+   DN+++ EF  + C VK   TG  LLK +L+
Sbjct: 362  ------LNLHDVLYVPQITKNLLSVSKLTADNNIFVEFDANCCSVKDKLTGQTLLKGRLK 415

Query: 468  NGLYCFHLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLGH 301
            +GLY    + P   K             P +Y ++            E+ H +LGH
Sbjct: 416  DGLYQLSDVSPQSNK------------DPCVYMSVK-----------ESWHRKLGH 448


>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 807

 Score =  118 bits (296), Expect(2) = 2e-40
 Identities = 74/234 (31%), Positives = 108/234 (46%), Gaps = 2/234 (0%)
 Frame = -2

Query: 1008 PRCQICHYSGHTVDRCFYRINLNFVPXXXXXXXXXXNPD*QGQNFGXXXXXXXXXXXXXX 829
            P CQ+C+  GH   +C++R + N+VP                                  
Sbjct: 246  PICQVCYKRGHVAAKCWHRFDENYVPDERHVAAAAQAA---------------------- 283

Query: 828  XXXXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSC 649
                 D  WY+DSGA +H+   +  L +    +G E++ T NG G++I H G++LV    
Sbjct: 284  --YAVDTNWYIDSGATDHITSELDKLTVREKYKGTEKIHTANGVGMQIKHIGHALVH--- 338

Query: 648  TKFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKLR 469
            T   H   L+N+LHVP  TKN IS S+ A+DN V+ E +  + +VK  A   ++LK + R
Sbjct: 339  TPDNHTLHLKNVLHVPHATKNLISASRLAEDNYVFLEIHSKYFLVKDRAMRNIILKGRCR 398

Query: 468  NGLYCFHLIQPSYTKSQDNPPPQTSFSSPNIYPT--INSAEVMRNKLDIETRHS 313
             GLY F      Y  S    P    + S   +PT  I S  V +NKL  +  HS
Sbjct: 399  KGLYPFPSEDAKYVCSV--APSFARWHSRLSHPTTPIVSRVVNQNKLPCQKSHS 450



 Score = 77.4 bits (189), Expect(2) = 2e-40
 Identities = 38/92 (41%), Positives = 59/92 (64%)
 Frame = -3

Query: 284 SQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATR 105
           S+ +C +C KAK H+LP+  S + +  PL+L+++D+WG +P     G  +Y+SF+D  ++
Sbjct: 450 SESVCDACQKAKSHQLPYSRSTSVSTRPLELVYSDVWGTAP-SSVGGNKFYVSFIDDFSK 508

Query: 104 FT*IYLLKLKSDATQAFIQFKNLVETQFNKKI 9
           FT +Y LK KSD  Q F +F+ LVE     KI
Sbjct: 509 FTWVYSLKHKSDVFQKFHEFQALVERLLGHKI 540


>gb|PNY05793.1| histone deacetylase [Trifolium pratense]
          Length = 1485

 Score =  103 bits (258), Expect(2) = 4e-40
 Identities = 81/252 (32%), Positives = 116/252 (46%), Gaps = 16/252 (6%)
 Frame = -2

Query: 1002 CQICHYSGHTVDRCFYRINLNFVPXXXXXXXXXXNPD*QGQ----------NFGXXXXXX 853
            CQIC  +GH    C+YR + N  P          + +   +          N        
Sbjct: 308  CQICGKNGHEASGCWYRYDPNPTPKQFKFPGFASSSNPSMRPPSYNPYMRPNANLAFNPY 367

Query: 852  XXXXXXXXXXXXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFG 673
                        S+  WY DSGA +H+ FN  NL   S   G E+V   NG G+ I   G
Sbjct: 368  YAMSEYGAPSVYSEAPWYPDSGATHHLTFNQQNLAQRSPYTGQEQVLMGNGQGVCINSLG 427

Query: 672  NSLVKSSCTKFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGT 493
            +S ++S   K      L NLLHVP+I+KN ISVS+FA+DN V FEF+P  C VK  A+  
Sbjct: 428  HSKIQSQF-KPNIQLSLNNLLHVPNISKNLISVSKFAQDNKVIFEFHPYKCFVKCQASKQ 486

Query: 492  VLLKEKL-RNGLYCF---HLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKL--D 331
            VLL+  +  +GLY F    L+  S    +      +SF++ N      ++ +  N    +
Sbjct: 487  VLLEGFVGTDGLYQFQPLQLLHKSDVNHKSKSANVSSFNNSNTSSVACNSAITANSFVNN 546

Query: 330  IETRHSRLGHAY 295
             +  H RLGH++
Sbjct: 547  FQNWHLRLGHSH 558



 Score = 91.3 bits (225), Expect(2) = 4e-40
 Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
 Frame = -3

Query: 290 NKSQI-LCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD* 114
           NK+ +  C++C   K HKL    S T +  P ++IH DLWGP+P   + G+NYYI+FVD 
Sbjct: 575 NKNALDFCNACSVGKSHKLHAPLSLTIHSNPFEVIHCDLWGPAPSTSYYGYNYYITFVDA 634

Query: 113 ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKIK 6
            T+FT IY LK K+DA  AF QF  L++ QF   IK
Sbjct: 635 CTKFTWIYFLKSKADALAAFKQFNTLIQNQFQTTIK 670


>dbj|GAU49672.1| hypothetical protein TSUD_91100 [Trifolium subterraneum]
          Length = 1380

 Score =  107 bits (266), Expect(2) = 4e-40
 Identities = 87/268 (32%), Positives = 115/268 (42%), Gaps = 31/268 (11%)
 Frame = -2

Query: 1002 CQICHYSGHTVDRCFYRINLNF--------VPXXXXXXXXXXNPD*QGQNFGXXXXXXXX 847
            CQICH   H    C YR   N          P           P   G  +         
Sbjct: 289  CQICHKPNHDASICRYRHTGNTGFGYRPSQYPPAQYPPSQYHFPYGYGYGYQPRPPPRPS 348

Query: 846  XXXXXXXXXXSDFR---WYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHF 676
                        F    WY DSGA +HV  +  NL+  ++  G+++V   NG GL I   
Sbjct: 349  TPQALLTSGNIGFNNQWWYPDSGASHHVTPDASNLSDAASLSGSDQVLMGNGQGLTINSI 408

Query: 675  GNSLVKSSCTKFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATG 496
            G S+  +S T  +    L NLL VP ITKN +SVS+FA+DN V+FEF+PSFC+VKS A+ 
Sbjct: 409  G-SMSFNSHTNPKTPLTLHNLLLVPSITKNLMSVSKFAQDNKVFFEFHPSFCLVKSQASS 467

Query: 495  TVLLKEKL-RNGLYCFHLIQPSYTKSQDNPPPQTSFSSP---------NIYPTI------ 364
             VLL+  +  +GLY F     S +     P    S S P         N  PT+      
Sbjct: 468  KVLLRGTVGADGLYKFTSSLDSISALNKCPKQCNSVSFPISSLSNNVVNSNPTVNVSQFE 527

Query: 363  ----NSAEVMRNKLDIETRHSRLGHAYY 292
                NS  V  +       H+RLGH ++
Sbjct: 528  INDNNSEYVSNSSFTYNLWHARLGHPHH 555



 Score = 88.2 bits (217), Expect(2) = 4e-40
 Identities = 42/91 (46%), Positives = 57/91 (62%)
 Frame = -3

Query: 275 LCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFNYYISFVD*ATRFT* 96
           LC +C   K H+L    S+T    P +L+  DLWGP+P+K   GF Y+++ VD  +RF  
Sbjct: 577 LCFACCLGKSHRLHAPASSTVYKTPFELVICDLWGPAPVKSSTGFTYFLTCVDAYSRFVW 636

Query: 95  IYLLKLKSDATQAFIQFKNLVETQFNKKIKC 3
           +Y LKLKS+    F  FK++VE QFN KIKC
Sbjct: 637 VYPLKLKSETLSKFTSFKSMVELQFNCKIKC 667


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|ABF96679.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1437

 Score =  108 bits (271), Expect(2) = 1e-39
 Identities = 72/239 (30%), Positives = 101/239 (42%)
 Frame = -2

Query: 1008 PRCQICHYSGHTVDRCFYRINLNFVPXXXXXXXXXXNPD*QGQNFGXXXXXXXXXXXXXX 829
            P+CQ+C+  GHTV  C+YR + NFVP                 ++G              
Sbjct: 277  PKCQLCYKRGHTVCDCWYRYDENFVPDERFAGTAV--------SYGV------------- 315

Query: 828  XXXXSDFRWYLDSGAMNHVAFNMGNLNITSNCQGNERVQTTNGTGLEIVHFGNSLVKSSC 649
                 D  WYLD+GA +HV   +  L +     GN++V T +G G+EI H GNS+VK+  
Sbjct: 316  -----DTNWYLDTGATDHVTGELDKLTVRDKYHGNDQVHTASGAGMEISHIGNSVVKTPS 370

Query: 648  TKFRHIFLLQNLLHVPDITKNFISVSQFAKDNDVYFEFYPSFCVVKSIATGTVLLKEKLR 469
                    L+++L+VP   KN +S  +   DN  + E Y  F  +K +A    LL+ +  
Sbjct: 371  RNLH----LKDVLYVPKANKNLVSAYKLTSDNLAFIELYRKFFFIKDLAMRRTLLRGRCH 426

Query: 468  NGLYCFHLIQPSYTKSQDNPPPQTSFSSPNIYPTINSAEVMRNKLDIETRHSRLGHAYY 292
             GLY      PS        P         +Y           K   E  HSRLGH  Y
Sbjct: 427  KGLYAL----PS--------PSSHHHQVKQVYGV--------TKPSFERWHSRLGHPSY 465



 Score = 84.7 bits (208), Expect(2) = 1e-39
 Identities = 42/96 (43%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
 Frame = -3

Query: 293 INKSQILCHSCMKAKFHKLPFLDSNTQNYAPLDLIHTDLWGPSPIKPFLGFN-YYISFVD 117
           +++   +C +C KAK H+L F  S +++  PL+L+ +D+WGP+P    +G N YY+SF+D
Sbjct: 482 VSEQVSVCDACQKAKSHQLSFPKSTSESKYPLELVFSDVWGPAPQS--VGNNKYYVSFID 539

Query: 116 *ATRFT*IYLLKLKSDATQAFIQFKNLVETQFNKKI 9
             ++FT IYLLK KS+    F +F++LVE  FN+KI
Sbjct: 540 DYSKFTWIYLLKYKSEVFDKFHEFQSLVERLFNRKI 575